RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17361
         (219 letters)



>d1c44a_ d.106.1.1 (A:) Sterol carrier protein 2 (SCP2) {Rabbit
           (Oryctolagus cuniculus) [TaxId: 9986]}
          Length = 123

 Score = 26.0 bits (57), Expect = 2.1
 Identities = 13/95 (13%), Positives = 29/95 (30%), Gaps = 15/95 (15%)

Query: 76  NAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAK 135
           N     +  +L ++G   VK           I+  ++ +    K  +  +         K
Sbjct: 10  NLVFKEIEKKLEEEGEQFVK-------KIGGIFAFKVKDGPGGKEATWVV-------DVK 55

Query: 136 TASTPLAPGVVLPSSTNL-GTPDDWQSIWSGSGNP 169
                + P     +   +     D  ++ +G  NP
Sbjct: 56  NGKGSVLPNSDKKADCTITMADSDLLALMTGKMNP 90


>d1pfoa_ f.9.1.1 (A:) Perfringolysin {Clostridium perfringens
           [TaxId: 1502]}
          Length = 471

 Score = 25.9 bits (57), Expect = 4.6
 Identities = 10/59 (16%), Positives = 22/59 (37%), Gaps = 11/59 (18%)

Query: 120 VLSSYLQFYFSSNV--AKTASTPLAPGVVLPSSTNLGTPDDWQSIWSGSGNPLLYIRSV 176
           ++ +Y Q +++ +    K  S      V         T +D +     +  P L + +V
Sbjct: 193 MILAYKQIFYTVSADLPKNPSDLFDDSV---------TFNDLKQKGVSNEAPPLMVSNV 242


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.132    0.410 

Gapped
Lambda     K      H
   0.267   0.0705    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 820,451
Number of extensions: 35426
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 90
Number of HSP's successfully gapped: 3
Length of query: 219
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 137
Effective length of database: 1,281,736
Effective search space: 175597832
Effective search space used: 175597832
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.5 bits)