BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17363
(790 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JKK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
pdb|2JKO|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 302 PHWQLSEKITLEFCERTRSELGKIMSKRKFEIDV-KLLLYAIQKTSNFEQLLEKRFADDE 360
P W I +E C T EL + RKF +D+ L+LYA Q ++ L KRF +
Sbjct: 84 PVW-----IIMELC--TLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRD 136
Query: 361 TEGEN 365
N
Sbjct: 137 IAARN 141
>pdb|2J0L|A Chain A, Crystal Structure Of A The Active Conformation Of The
Kinase Domain Of Focal Adhesion Kinase With A
Phosphorylated Activation Loop
Length = 276
Score = 32.3 bits (72), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 302 PHWQLSEKITLEFCERTRSELGKIMSKRKFEIDV-KLLLYAIQKTSNFEQLLEKRFADDE 360
P W I +E C T EL + RKF +D+ L+LYA Q ++ L KRF +
Sbjct: 84 PVW-----IIMELC--TLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRD 136
Query: 361 TEGEN 365
N
Sbjct: 137 IAARN 141
>pdb|1ECF|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECF|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase
pdb|1ECG|A Chain A, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECG|B Chain B, Don Inactivated Escherichia Coli Glutamine
Phosphoribosylpyrophosphate (Prpp) Amidotransferase
pdb|1ECB|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECB|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Gmp, 1 Mg Per
Subunit
pdb|1ECC|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECC|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With Mn-Cprpp And
5-Oxo- Norleucine
pdb|1ECJ|A Chain A, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|B Chain B, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|C Chain C, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
pdb|1ECJ|D Chain D, Escherichia Coli Glutamine Phosphoribosylpyrophosphate
(Prpp) Amidotransferase Complexed With 2 Amp Per
Tetramer
Length = 504
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 41/83 (49%), Gaps = 16/83 (19%)
Query: 688 VVKGMTKAEMI--------LKLVMASAEPDICFVEQFCKLLPES--------DMTEFQRI 731
+V+G T ++I K+ +ASA P+I F + +P + ++ E ++I
Sbjct: 369 IVRGTTSEQIIEMAREAGAKKVYLASAAPEIRFPNVYGIDMPSATELIAHGREVDEIRQI 428
Query: 732 LDMKGLKTNEKNNLINLFRPKNP 754
+ GL + N+LI+ R +NP
Sbjct: 429 IGADGLIFQDLNDLIDAVRAENP 451
>pdb|2J0J|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 302 PHWQLSEKITLEFCERTRSELGKIMSKRKFEIDV-KLLLYAIQKTSNFEQLLEKRFADDE 360
P W I +E C T EL + RKF +D+ L+LYA Q ++ L KRF +
Sbjct: 464 PVW-----IIMELC--TLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRD 516
Query: 361 TEGEN 365
N
Sbjct: 517 IAARN 521
>pdb|2J0K|A Chain A, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains.
pdb|2J0K|B Chain B, Crystal Structure Of A Fragment Of Focal Adhesion Kinase
Containing The Ferm And Kinase Domains
Length = 656
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 302 PHWQLSEKITLEFCERTRSELGKIMSKRKFEIDV-KLLLYAIQKTSNFEQLLEKRFADDE 360
P W I +E C T EL + RKF +D+ L+LYA Q ++ L KRF +
Sbjct: 464 PVW-----IIMELC--TLGELRSFLQVRKFSLDLASLILYAYQLSTALAYLESKRFVHRD 516
Query: 361 TEGEN 365
N
Sbjct: 517 IAARN 521
>pdb|4EBW|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
pdb|4EBV|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With Novel Allosteric Inhibitor
Length = 304
Score = 31.2 bits (69), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 302 PHWQLSEKITLEFCERTRSELGKIMSKRKFEIDV-KLLLYAIQKTSNFEQLLEKRFADDE 360
P W I +E C T EL + RK+ +D+ L+LYA Q ++ L KRF +
Sbjct: 112 PVW-----IIMELC--TLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRD 164
Query: 361 TEGEN 365
N
Sbjct: 165 IAARN 169
>pdb|1MP8|A Chain A, Crystal Structure Of Focal Adhesion Kinase (Fak)
pdb|4I4F|A Chain A, Structure Of Focal Adhesion Kinase Catalytic Domain In
Complex With An Allosteric Binding Pyrazolobenzothiazine
Compound
Length = 281
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 302 PHWQLSEKITLEFCERTRSELGKIMSKRKFEIDV-KLLLYAIQKTSNFEQLLEKRFADDE 360
P W I +E C T EL + RK+ +D+ L+LYA Q ++ L KRF +
Sbjct: 89 PVW-----IIMELC--TLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRD 141
Query: 361 TEGEN 365
N
Sbjct: 142 IAARN 146
>pdb|2J0M|B Chain B, Crystal Structure A Two-Chain Complex Between The Ferm And
Kinase Domains Of Focal Adhesion Kinase.
pdb|2JKQ|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 310 ITLEFCERTRSELGKIMSKRKFEIDV-KLLLYAIQKTSNFEQLLEKRFADDETEGEN 365
I +E C T EL + RK+ +D+ L+LYA Q ++ L KRF + N
Sbjct: 87 IIMELC--TLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARN 141
>pdb|2JKM|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Bis- Anilino Pyrimidine Inhibitor
Length = 276
Score = 31.2 bits (69), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 310 ITLEFCERTRSELGKIMSKRKFEIDV-KLLLYAIQKTSNFEQLLEKRFADDETEGEN 365
I +E C T EL + RK+ +D+ L+LYA Q ++ L KRF + N
Sbjct: 87 IIMELC--TLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARN 141
>pdb|3BZ3|A Chain A, Crystal Structure Analysis Of Focal Adhesion Kinase With A
Methanesulfonamide Diaminopyrimidine Inhibitor
Length = 276
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 310 ITLEFCERTRSELGKIMSKRKFEIDV-KLLLYAIQKTSNFEQLLEKRFADDETEGEN 365
I +E C T EL + RK+ +D+ L+LYA Q ++ L KRF + N
Sbjct: 84 IIMELC--TLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRDIAARN 138
>pdb|2ETM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2ETM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain
Complexed With 7h-Pyrrolo [2,3-D] Pyrimidine Derivative
pdb|2IJM|A Chain A, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
pdb|2IJM|B Chain B, Crystal Structure Of Focal Adhesion Kinase Domain With 2
Molecules In The Asymmetric Unit Complexed With Adp And
Atp
Length = 281
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 302 PHWQLSEKITLEFCERTRSELGKIMSKRKFEIDV-KLLLYAIQKTSNFEQLLEKRFADDE 360
P W I +E C T EL + RK+ +D+ L+LYA Q ++ L KRF +
Sbjct: 86 PVW-----IIMELC--TLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRD 138
Query: 361 TEGEN 365
N
Sbjct: 139 IAARN 143
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 30.8 bits (68), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 575 ALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYF 622
AL +K W V+ VGDQ +V+ + LK+ ++R +LS S F
Sbjct: 311 ALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKK---IVRVDLSGSTPRF 355
>pdb|3PXK|A Chain A, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
pdb|3PXK|B Chain B, Focal Adhesion Kinase Catalytic Domain In Complex With
Pyrrolo[2,3- D]thiazole
Length = 282
Score = 30.8 bits (68), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 8/65 (12%)
Query: 302 PHWQLSEKITLEFCERTRSELGKIMSKRKFEIDV-KLLLYAIQKTSNFEQLLEKRFADDE 360
P W I +E C T EL + RK+ +D+ L+LYA Q ++ L KRF +
Sbjct: 87 PVW-----IIMELC--TLGELRSFLQVRKYSLDLASLILYAYQLSTALAYLESKRFVHRD 139
Query: 361 TEGEN 365
N
Sbjct: 140 IAARN 144
>pdb|3EGW|B Chain B, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 509
Score = 30.4 bits (67), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 272 SAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKR 329
+ W + YAWF +VE K G FP W+ EK + + +L M R
Sbjct: 28 NVWTSREGVEYAWFN----NVETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNR 81
>pdb|1Q16|B Chain B, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
pdb|1R27|B Chain B, Crystal Structure Of Nargh Complex
pdb|1R27|D Chain D, Crystal Structure Of Nargh Complex
pdb|1SIW|B Chain B, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y5I|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|B Chain B, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
pdb|3IR5|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49c
pdb|3IR6|B Chain B, Crystal Structure Of Narghi Mutant Narg-H49s
pdb|3IR7|B Chain B, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 512
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 272 SAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKR 329
+ W + YAWF +VE K G FP W+ EK + + +L M R
Sbjct: 28 NVWTSREGVEYAWFN----NVETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNR 81
>pdb|1Y4Z|B Chain B, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
Length = 512
Score = 30.4 bits (67), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 4/58 (6%)
Query: 272 SAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKR 329
+ W + YAWF +VE K G FP W+ EK + + +L M R
Sbjct: 28 NVWTSREGVEYAWFN----NVETKPGQGFPTDWENQEKYKGGWIRKINGKLQPRMGNR 81
>pdb|4HTO|A Chain A, Crystal Structure Of The Dbd Domain Of Human Dna Ligase Iv
Apo Form
pdb|4HTP|A Chain A, Crystal Structure Of The Dbd Domain Of Human Dna Ligase Iv
Bound To Artemis Peptide
pdb|4HTP|B Chain B, Crystal Structure Of The Dbd Domain Of Human Dna Ligase Iv
Bound To Artemis Peptide
Length = 240
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 32/125 (25%), Positives = 59/125 (47%), Gaps = 24/125 (19%)
Query: 8 YNEILNYPKSVQDALKEI---MPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKME 64
Y E+LN P+ +DALK + P+ D DF + Y L P + K
Sbjct: 93 YIELLNLPRDGKDALKLLNYRTPTGTHGDAGDFAMIAYF-VLKPR---------CLQKGS 142
Query: 65 SNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREIT 124
I+++++ ++++ + S +D K K ++QL +Q S A + + ++R I
Sbjct: 143 LTIQQVNDLLDSIASNNSAKRKDLIK------KSLLQLITQ-----SSALEQKWLIRMII 191
Query: 125 RDIKL 129
+D+KL
Sbjct: 192 KDLKL 196
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,302,629
Number of Sequences: 62578
Number of extensions: 781248
Number of successful extensions: 2423
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 2405
Number of HSP's gapped (non-prelim): 45
length of query: 790
length of database: 14,973,337
effective HSP length: 107
effective length of query: 683
effective length of database: 8,277,491
effective search space: 5653526353
effective search space used: 5653526353
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)