BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17363
(790 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZLD7|VPS53_CHICK Vacuolar protein sorting-associated protein 53 homolog OS=Gallus
gallus GN=VPS53 PE=2 SV=1
Length = 831
Score = 857 bits (2214), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 441/833 (52%), Positives = 578/833 (69%), Gaps = 72/833 (8%)
Query: 12 LNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMD 71
L +VQ A++++ PS D LD DF++V+YIN+LFPTEQSL+NID+V+ K+ I+++D
Sbjct: 16 LELAPAVQAAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLANIDEVVNKIRLKIRKLD 75
Query: 72 EEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLD 131
+ I TVVR Q+ VGQDG++ALE++QK I QLF +++DIK KAEKSE+MV+EITRDIK LD
Sbjct: 76 DNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEITRDIKQLD 135
Query: 132 TAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQ 191
AKR+LTT+IT LNHLHML GV SL + +RQYGE+ LQGV+ V++HF IPQ
Sbjct: 136 HAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVVNVLEHFNKYMGIPQ 195
Query: 192 ILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGS---FVPSKQIAEALRVVSILDPKVKK 248
I +L +V QN L +QI D + AF PS G+ PS + +A V ++LDP++K+
Sbjct: 196 IRQLSERVKAAQNELGQQILADFEEAF--PSQGTKRPGGPSNVLRDACLVANVLDPRIKQ 253
Query: 249 NILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSE 308
I++ FI LSEYLVLF E++D AWLDKID+RYAW K+QL+ E+K+G +FP W ++E
Sbjct: 254 EIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPQEWCMTE 313
Query: 309 KITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFA----------- 357
+I +EFC TR+EL KIM R EI+VKLLL+AIQ+T+NFE LL KRF+
Sbjct: 314 RIAVEFCHVTRTELAKIMRTRAKEIEVKLLLFAIQRTTNFEGLLAKRFSGCTLADGTVKK 373
Query: 358 ------------DDETEGE-----------NKTK--------FDGIIGSCFQNYLYIYIE 386
+DET E +K K F GI+ CF+ +LY+YIE
Sbjct: 374 PEAPPPSTNPFLEDETGTETDEIVIEKSDADKPKKPKVPDNPFHGIVSKCFEPHLYVYIE 433
Query: 387 SLDRNLSDLIDRFAEDSKQ---VLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLS 443
S D+NLS+LIDRF D K N++E VLPSCADLF++YKK +VQC+QLS
Sbjct: 434 SQDKNLSELIDRFVADFKAQGPPKPNVDE-----GGAVLPSCADLFVYYKKCMVQCSQLS 488
Query: 444 TGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQR--- 500
TGEPM+AL T FQ+YLR YA K+L N+ K + T+ S L+K++
Sbjct: 489 TGEPMIALTTIFQKYLREYAWKILSGNLPKTTSSSGGLTITS---------LLKEKEGSE 539
Query: 501 -TKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISS 559
K+T +E IC +L+TAEYCL TTQQLE+KLKEKVD +L +I+L+ E D F VIS+
Sbjct: 540 VAKFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDASLVERINLTGETDTFSIVISN 599
Query: 560 CIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSR 619
IQLLVQDL+ AC+PALTAM K W +VE VGDQS YVT++ H+KQ+VP+IR NL+S+R
Sbjct: 600 SIQLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTR 659
Query: 620 KYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRK 679
KYFTQFC+KFANSFIPK + H+FKCKP+S VGAEQLLLD H LK VLLDLPSIGSQVVRK
Sbjct: 660 KYFTQFCIKFANSFIPKFINHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRK 719
Query: 680 APASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKT 739
APAS+T++VVKGMT+AEMILK+VMA EP + FV+ + KLL + FQ+ILDMKGLK
Sbjct: 720 APASYTRIVVKGMTRAEMILKVVMAPHEPPVVFVDNYIKLLADCSTDTFQKILDMKGLKR 779
Query: 740 NEKNNLINLFR---PKNPSNTSSSLVAATNSTSSSRQDTSSIQKLNNLIKKNL 789
+E+++++ LFR P PS +S + + S + Q++S I+KL LIKK L
Sbjct: 780 SEQSSMLELFRQRLPAPPSGVENS-GSLSLSAPTPEQESSRIRKLEKLIKKRL 831
>sp|Q8CCB4|VPS53_MOUSE Vacuolar protein sorting-associated protein 53 homolog OS=Mus
musculus GN=Vps53 PE=2 SV=1
Length = 832
Score = 854 bits (2206), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/835 (53%), Positives = 574/835 (68%), Gaps = 74/835 (8%)
Query: 11 ILNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEM 70
+L VQ A++++ PS D LD DF++V+YIN+LFPTEQSL+NIDDV+ K+ I+ +
Sbjct: 16 VLQLTPEVQLAIEQVFPSQDPLDQADFNAVEYINTLFPTEQSLANIDDVVNKIRLKIRRL 75
Query: 71 DEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLL 130
D+ I TVVR Q+ VGQDG++ALE++QK I QLF +++DIK KAEKSE+MV+EITRDIK L
Sbjct: 76 DDNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEITRDIKQL 135
Query: 131 DTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIP 190
D AKR+LTT+IT LNHLHML GV SL + +RQYGE+ LQGV+ V++HF IP
Sbjct: 136 DHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVMNVLEHFHKYMGIP 195
Query: 191 QILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGS---FVPSKQIAEALRVVSILDPKVK 247
QI +L +V Q L +QI D + AF PS G+ PS + +A V +ILDP++K
Sbjct: 196 QIRQLSERVKAAQTELGQQILADFEEAF--PSQGTKRPGGPSNVLRDACLVANILDPRIK 253
Query: 248 KNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLS 307
+ I++ FI LSEYLVLF E++D AWLDKID+RYAW K+QL+ E+K+G +FP W ++
Sbjct: 254 QEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWVKRQLVDYEEKYGRMFPREWCMT 313
Query: 308 EKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFA---------- 357
E+I++EFC TR+EL KIM R EI+VKLLL+AIQ+T+NFE L KRF+
Sbjct: 314 ERISVEFCHVTRAELSKIMRARAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLK 373
Query: 358 -------------DDETEGE--------------NKTK-----FDGIIGSCFQNYLYIYI 385
+DET E K K F GI+ CF+ +LY+YI
Sbjct: 374 KLESPPPSTNPFLEDETTPEMEELALEKGELEQPKKPKAPDNPFHGIVSKCFEPHLYVYI 433
Query: 386 ESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTG 445
ES D+NLS+LIDRF D K T E A VLPSCADLF++YKK +VQC+QLSTG
Sbjct: 434 ESQDKNLSELIDRFVADFKAQGPPKPNTDEGGA--VLPSCADLFVYYKKCMVQCSQLSTG 491
Query: 446 EPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQR----T 501
EPM+AL T FQ+YLR YA K+L N+ K + + T++S L+K++
Sbjct: 492 EPMIALTTIFQKYLREYAWKILSGNLPKTSSSSGGLTISS---------LLKEKEGSEVA 542
Query: 502 KYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCI 561
++T +E IC +L+TAEYCL TTQQLE+KLKEKVD +L +I+L+ E D F VISS I
Sbjct: 543 RFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDVSLTERINLTGEMDTFSTVISSSI 602
Query: 562 QLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKY 621
QLLVQDL+ AC+PAL AM K W +VE VGDQS YVT++ H+KQ+VP+IR NL+S+RKY
Sbjct: 603 QLLVQDLDAACDPALIAMSKMPWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKY 662
Query: 622 FTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAP 681
FTQFC+KFANSFIPK + H+FKCKP+S VGAEQLLLD H LK VLLDLPSIGSQVVRKAP
Sbjct: 663 FTQFCIKFANSFIPKFITHLFKCKPISMVGAEQLLLDTHSLKMVLLDLPSIGSQVVRKAP 722
Query: 682 ASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKTNE 741
AS+TK+VVKGMT+AEMILK+VMA EP + FV+ + KLL + + FQ+ILDMKGLK +E
Sbjct: 723 ASYTKIVVKGMTRAEMILKVVMAPHEPLVVFVDNYIKLLTDCNSETFQKILDMKGLKRSE 782
Query: 742 KNNLINLFR---PKNPSNTSS----SLVAATNSTSSSRQDTSSIQKLNNLIKKNL 789
+++++ L R P PS T SL+A T SSR I+KL LIKK L
Sbjct: 783 QSSMLELLRQRLPAPPSGTEGSSTLSLIAPTPEQESSR-----IRKLEKLIKKRL 832
>sp|Q5R5J4|VPS53_PONAB Vacuolar protein sorting-associated protein 53 homolog OS=Pongo
abelii GN=VPS53 PE=2 SV=1
Length = 699
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/694 (52%), Positives = 472/694 (68%), Gaps = 62/694 (8%)
Query: 11 ILNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEM 70
+L VQ A++++ PS D LD DF++V+YIN+LFPTEQSL+NID+V+ K+ I+ +
Sbjct: 16 VLQLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLANIDEVVNKIRLKIRRL 75
Query: 71 DEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLL 130
D+ I TVVR Q+ VGQDG++ALE++QK I QLF +++DIK KAEKSE+MV+EITRDIK L
Sbjct: 76 DDNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEITRDIKQL 135
Query: 131 DTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIP 190
D AKR+LTT+IT LNHLHML GV SL + +RQYGE+ LQGV+ V++HF IP
Sbjct: 136 DHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVMNVLEHFHKYMGIP 195
Query: 191 QILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGS---FVPSKQIAEALRVVSILDPKVK 247
QI +L +V Q L +QI D + AF PS G+ PS + +A V +ILDP++K
Sbjct: 196 QIRQLSERVKAAQTELGQQILADFEEAF--PSQGTKRPGGPSNVLRDACLVANILDPRIK 253
Query: 248 KNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLS 307
+ I++ FI LSEYLVLF E++D AWLDKID+RYAW K+QL+ E+K+G +FP W ++
Sbjct: 254 QEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPREWCMA 313
Query: 308 EKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFA---------- 357
E+I +EFC TR+EL KIM R EI+VKLLL+AIQ+T+NFE L KRF+
Sbjct: 314 ERIAVEFCHVTRTELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLK 373
Query: 358 -------------DDETEGE--------------NKTK-----FDGIIGSCFQNYLYIYI 385
+DE E K K F GI+ CF+ +LY+YI
Sbjct: 374 KLESPPPSTNPFLEDEPTPEMEELATEKGDLDQPKKPKAPDNPFHGIVSKCFEPHLYVYI 433
Query: 386 ESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTG 445
ES D+NL +LIDRF D K T E A VLPSCADLF++YKK +VQC+QLSTG
Sbjct: 434 ESQDKNLGELIDRFVADFKAQGPPKPNTDEGGA--VLPSCADLFVYYKKCMVQCSQLSTG 491
Query: 446 EPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQR----T 501
EPM+AL T FQ+YLR YA K+L N+ K + T++S L+K++
Sbjct: 492 EPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISS---------LLKEKEGSEVA 542
Query: 502 KYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCI 561
K+T +E IC +L+TAEYCL TTQQLE+KLKEKVD +L +I+L+ E D F VISS I
Sbjct: 543 KFTLEELCLICSILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSI 602
Query: 562 QLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKY 621
QLLVQDL+ AC+PALTAM K W +VE VGDQS YVT++ H+KQ+VP+IR NL+S+RKY
Sbjct: 603 QLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKY 662
Query: 622 FTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQL 655
FTQFC+KFANSFIPK + H+FKCKP+S VGAEQ+
Sbjct: 663 FTQFCIKFANSFIPKFITHLFKCKPISMVGAEQV 696
>sp|Q5VIR6|VPS53_HUMAN Vacuolar protein sorting-associated protein 53 homolog OS=Homo
sapiens GN=VPS53 PE=1 SV=1
Length = 699
Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/694 (52%), Positives = 472/694 (68%), Gaps = 62/694 (8%)
Query: 11 ILNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEM 70
+L VQ A++++ PS D LD DF++V+YIN+LFPTEQSL+NID+V+ K+ I+ +
Sbjct: 16 VLQLTPEVQLAIEQVFPSQDPLDRADFNAVEYINTLFPTEQSLANIDEVVNKIRLKIRRL 75
Query: 71 DEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLL 130
D+ I TVVR Q+ VGQDG++ALE++QK I QLF +++DIK KAEKSE+MV+EITRDIK L
Sbjct: 76 DDNIRTVVRGQTNVGQDGRQALEEAQKAIQQLFGKIKDIKDKAEKSEQMVKEITRDIKQL 135
Query: 131 DTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIP 190
D AKR+LTT+IT LNHLHML GV SL + +RQYGE+ LQGV+ V++HF IP
Sbjct: 136 DHAKRHLTTSITTLNHLHMLAGGVDSLEAMTRRRQYGEVANLLQGVMNVLEHFHKYMGIP 195
Query: 191 QILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGS---FVPSKQIAEALRVVSILDPKVK 247
QI +L +V Q L +QI D + AF PS G+ PS + +A V +ILDP++K
Sbjct: 196 QIRQLSERVKAAQTELGQQILADFEEAF--PSQGTKRPGGPSNVLRDACLVANILDPRIK 253
Query: 248 KNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLS 307
+ I++ FI LSEYLVLF E++D AWLDKID+RYAW K+QL+ E+K+G +FP W ++
Sbjct: 254 QEIIKKFIKQHLSEYLVLFQENQDVAWLDKIDRRYAWIKRQLVDYEEKYGRMFPREWCMA 313
Query: 308 EKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFA---------- 357
E+I +EFC TR+EL KIM R EI+VKLLL+AIQ+T+NFE L KRF+
Sbjct: 314 ERIAVEFCHVTRAELAKIMRTRAKEIEVKLLLFAIQRTTNFEGFLAKRFSGCTLTDGTLK 373
Query: 358 -------------DDETEGE--------------NKTK-----FDGIIGSCFQNYLYIYI 385
+DE E K K F GI+ CF+ +LY+YI
Sbjct: 374 KLESPPPSTNPFLEDEPTPEMEELATEKGDLDQPKKPKAPDNPFHGIVSKCFEPHLYVYI 433
Query: 386 ESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTG 445
ES D+NL +LIDRF D K T E A VLPSCADLF++YKK +VQC+QLSTG
Sbjct: 434 ESQDKNLGELIDRFVADFKAQGPPKPNTDEGGA--VLPSCADLFVYYKKCMVQCSQLSTG 491
Query: 446 EPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQR----T 501
EPM+AL T FQ+YLR YA K+L N+ K + T++S L+K++
Sbjct: 492 EPMIALTTIFQKYLREYAWKILSGNLPKTTTSSGGLTISS---------LLKEKEGSEVA 542
Query: 502 KYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCI 561
K+T +E IC +L+TAEYCL TTQQLE+KLKEKVD +L +I+L+ E D F VISS I
Sbjct: 543 KFTLEELCLICNILSTAEYCLATTQQLEEKLKEKVDVSLIERINLTGEMDTFSTVISSSI 602
Query: 562 QLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKY 621
QLLVQDL+ AC+PALTAM K W +VE VGDQS YVT++ H+KQ+VP+IR NL+S+RKY
Sbjct: 603 QLLVQDLDAACDPALTAMSKMQWQNVEHVGDQSPYVTSVILHIKQNVPIIRDNLASTRKY 662
Query: 622 FTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQL 655
FTQFCVKFANSFIPK + H+FKCKP+S VGAEQ+
Sbjct: 663 FTQFCVKFANSFIPKFITHLFKCKPISMVGAEQV 696
>sp|P34561|VPS53_CAEEL Vacuolar protein sorting-associated protein 53 homolog
OS=Caenorhabditis elegans GN=vps-53 PE=3 SV=3
Length = 798
Score = 518 bits (1334), Expect = e-146, Method: Compositional matrix adjust.
Identities = 283/755 (37%), Positives = 454/755 (60%), Gaps = 37/755 (4%)
Query: 43 INSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQL 102
IN LFPTEQSL+ +D +I +E I E+D E+ +V + + V + G++AL+ +Q +++L
Sbjct: 38 INELFPTEQSLTQLDSIIASVEGEIGELDNELAYLVETNANVSERGEEALKHAQDAMIEL 97
Query: 103 FSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIE 162
+ I+ + + S+E+VRE+TRDIK LD AKRNLT +IT L+HLH+L+TGV SL ++
Sbjct: 98 EKSIGSIRERTKSSDEIVREMTRDIKQLDIAKRNLTASITTLHHLHILLTGVESLGAWVD 157
Query: 163 QRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPS 222
++ Y I L ++ V++ F + QI L Q+ +++ +L+ Q+ +DLKNAFQ
Sbjct: 158 KKDYSSIARQLPAILNVLQLFDAYKESDQIANLSGQLDKLKASLTIQLAKDLKNAFQ--- 214
Query: 223 SGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRY 282
+G S +I + RV + L+ VK+N ++WFI QLSEY++++ ++E+ AWLDK+D RY
Sbjct: 215 TGQL--SDRITDMCRVAAALEGNVKENFVKWFIEQQLSEYVIIYADNEEGAWLDKVDDRY 272
Query: 283 AWFKKQLLHVEDK-FGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYA 341
WF ++L E +FP W + ++T EFC TR L +IM++R+ ++D KLL +A
Sbjct: 273 KWFVRKLTDFERAGLSNIFPADWHMGRRLTSEFCTVTRDILYRIMTRRRQDLDWKLLGHA 332
Query: 342 IQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAE 401
IQ T FE LL KRF + ++ F+ I S F +L ++I + ++ L++ +D A
Sbjct: 333 IQHTKMFEALLTKRFPE-----KDGISFEKAIWSVFDTFLDVFINAQEKTLNEFLDTCAS 387
Query: 402 DSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEP---MVALATTFQQY 458
+ + T A P PS AD+F+ KK + + ++LS+ EP + + +
Sbjct: 388 KIRSGEEKPSRESSTHAVP-FPSSADMFLLLKKVITESSKLSS-EPDALIRDVIGVVRVC 445
Query: 459 LRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQ--RTKYTPQEQAKICCVLT 516
LR YA L + Q + +N+ LI+++ + TP +Q +CC+L
Sbjct: 446 LRGYATSCLVAFLPSLGSQQSG-----AANL---FSLIREEIAYPRLTPDQQFLVCCILA 497
Query: 517 TAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPAL 576
TA++C ET+ QL++KL +++ P +D+S E + F+++ + +Q+LVQD+E C+ AL
Sbjct: 498 TADWCAETSIQLQEKLSQRI-PG----VDISQETEAFYSITNQSLQVLVQDVESTCDAAL 552
Query: 577 TAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPK 636
++ K NW++V+ VGD+S ++ ++ +HL+Q+VPLIR LS RKYF FC+K A K
Sbjct: 553 QSISKVNWTAVDCVGDESPFIGSMRAHLRQAVPLIRDMLSDRRKYFAHFCLKLATQLAHK 612
Query: 637 LVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAE 696
V +F+C+ +ST GAEQLLL+ H LKT LL +PSI S + K P ++ V +TKAE
Sbjct: 613 FVGSLFRCRTISTHGAEQLLLETHSLKTFLLSVPSIDSIINSKPPTAYVTSVNAALTKAE 672
Query: 697 MILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNNLINLFRPK---- 752
MILK+VM S E FVEQ+ KLLP SD E Q++L+MKG+K E + ++N +R K
Sbjct: 673 MILKVVMCSLETVDEFVEQYIKLLPASDAAEMQKVLEMKGVKRQEHSAVLNAYRLKIGAS 732
Query: 753 --NPSNTSSSLVAATNSTSSSRQDTSSIQKLNNLI 785
+P S+SL + + +S+ + N +
Sbjct: 733 GSDPIQQSNSLTSRIGGALPTVGSAASVSEAFNAV 767
>sp|P87129|VPS53_SCHPO Vacuolar protein sorting-associated protein 53
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=vps53 PE=1 SV=1
Length = 756
Score = 261 bits (668), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 178/736 (24%), Positives = 357/736 (48%), Gaps = 72/736 (9%)
Query: 32 LDDHDFDSVQYINSLFPTEQSLSNIDDVIM----KMESNIKEMDEEIETVVRSQSGVGQD 87
+ +++F V+ ++ L P + + ++ + + +++ ++K++D +T ++ +G+
Sbjct: 14 IGNNEFKFVETLHELLPEDITYDDLGSLRLSLSERLQESVKKLDANKKTYEDAKLSMGE- 72
Query: 88 GKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHL 147
++D I+ L ++ ++S AE ++ + ++T +IK LD AK+NL T++T L L
Sbjct: 73 ---KMDDLNSSIVSLLQELSTLQSVAENTQSSIVQMTSEIKNLDFAKQNLATSMTMLKRL 129
Query: 148 HMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLS 207
MLVT LRTL + +++GE + +Q ++++ F+ + +I L +++ Q +
Sbjct: 130 QMLVTAYEKLRTLRQNQKFGEAISLMQATLQLLNFFKKYRSVERIASLSRSISEFQKSFY 189
Query: 208 EQITQDLKNAFQNPSS--GSFVPS--KQIAEALRVVSILDPKVKKNILEWFISLQLSEYL 263
EQ+ ++ F+ S G F PS + + E R + I ++++ W+ QL +++
Sbjct: 190 EQVFDTFQSQFKKESGMRGGFSPSSVQYLNELCRFIDIFAGDPPESVIRWYCRHQLEDFM 249
Query: 264 VLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELG 323
+F E+E++ L+ + +RY WFKK L + +FPPHW++ ++ FCE T+++L
Sbjct: 250 KVFRENEEAGSLENLPRRYTWFKKLLQTYDQLHKPIFPPHWKVDFRLYEVFCEETKNDLS 309
Query: 324 KIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDET------EGENKTKFDGIIGSCF 377
K++ + + V + ++++T FE ++ RF + ++ E + + ++ + S F
Sbjct: 310 KLLKDDRLSLQV--FVASLEQTLEFESFIDHRFYNTKSRFNSNFEPKERQAYNA-LSSVF 366
Query: 378 QNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLV 437
+ + +Y + S L + FA + +T ++ VL S LF Y+K+L
Sbjct: 367 EPHYTLYFNQQSQEFSILFENFALE--------KQTSTDESSQVLSSSIKLFQAYRKTLT 418
Query: 438 QCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIK 497
Q +L+ P+V L F ++LR Y L + Q T K
Sbjct: 419 QFVRLTRSSPLVGLKNLFIKWLRRYTQVEL---LDYQESST-----------------FK 458
Query: 498 DQRTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVI 557
D I L TAEY TT +LE++ +E + +K+ S +V +
Sbjct: 459 D------------IAIRLNTAEYIYRTTIELEKRFQEISNKEFKDKMSFSEVLEVISSSR 506
Query: 558 SSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTA----ITSHLKQSVPLIRT 613
+ ++ E L + K + ++E+VGDQS YV +T+ + + ++
Sbjct: 507 GTLLKFATGKFENVLNSDLEPLSKMDLKNIETVGDQSSYVGGAVQNMTAKASEFLSVVDL 566
Query: 614 NLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIG 673
N+ + FC + SF + + ++ KP+S VGAEQLLLD++ K LL LP +
Sbjct: 567 NM-----FARNFCDRSCESFTRQFLNAIYLAKPISEVGAEQLLLDLYSFKNALLKLPDLK 621
Query: 674 SQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILD 733
S+ + M E +LK ++ A P F++ + L+ + +T F +L+
Sbjct: 622 QDY--SITDSYINHLTIFMGYIETVLKTLLTPASPKAGFIQSYIFLVKDRSVTNFTVLLE 679
Query: 734 MKGLKTNEKNNLINLF 749
+KG+ ++ ++ + F
Sbjct: 680 LKGVGKSDISSFLQQF 695
>sp|P47061|VPS53_YEAST Vacuolar protein sorting-associated protein 53 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS53 PE=1
SV=1
Length = 822
Score = 132 bits (332), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 137/587 (23%), Positives = 272/587 (46%), Gaps = 67/587 (11%)
Query: 36 DFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKA--LE 93
D+D ++ I ++ +++SL+NID++I S K++ E+I ++ ++ + + K + +E
Sbjct: 7 DYDPLEDITNILFSKESLNNIDELISITRSYKKQLQEDI---LKEENELKEHPKNSAEIE 63
Query: 94 DSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTG 153
S + + Q F + +D+ + E + + +T I LD AK+NLT ++T +L +L
Sbjct: 64 ASLRKVFQDFKETQDVSASTELT---ISNLTEGISYLDIAKKNLTHSLTLFQNLKILTDS 120
Query: 154 VHSLRTLIEQRQYGEIVMPLQGVIEVMKH-FQDSTDIPQILELRSQVAQIQNTLSEQITQ 212
L+ Q + ++V P + + + ++ F + +I L S +++++ +I Q
Sbjct: 121 YIQCNELLSQGSFKKMVSPYKIMCSLAENTFISYKSLDEINYLLSSISRLKGDTLSKIKQ 180
Query: 213 DLKNAFQ--NPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESE 270
+ F N S + ++ E + D + +++W + L E +F +
Sbjct: 181 NYNALFSGGNISEHDTALTMELREGACELLDCDTSTRAQMIDWCLDKLLFEMKEIFRVDD 240
Query: 271 DSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRK 330
++ L+ + +RY +FKK L + KF F W+++ ++T F T +L ++ KR+
Sbjct: 241 EAGSLENLSRRYIYFKKILNNFNSKFADYFLKDWEMAVRLTTTFYHITHKDLQTLL-KRE 299
Query: 331 FE---IDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIES 387
F+ + L + A+Q T +FE+ ++ RF+ E + + SCF+ YL +++
Sbjct: 300 FKDKNPSIDLFMTALQSTLDFEKYIDVRFSKKIKEPK--------LSSCFEPYLTLWVSH 351
Query: 388 LDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQL----S 443
++ + + + K N ET + VLPS ADLF Y+ L Q +L +
Sbjct: 352 QNQMMEKKFLSYMSEPKYPSN------ETESL-VLPSSADLFRTYRSVLTQTLELIDNNA 404
Query: 444 TGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKY 503
+ +LA F ++L+ Y+ K+L L NI L + KY
Sbjct: 405 NDSILTSLANFFSRWLQTYSQKIL-------------LPLLLPDNIEVQDKL---EAAKY 448
Query: 504 TPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNE----QDVFHNVISS 559
T ++ TA+YC T QLE KL E N+ L+N ++++ ++++
Sbjct: 449 T-------VLLINTADYCATTIDQLEDKLSEFS----GNREKLANSFTKTKNIYDDLLAK 497
Query: 560 CIQLLVQD-LELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLK 605
L+ + L + +WS+ ++ D S Y+ + S LK
Sbjct: 498 GTSFLLNRVIPLDLNFVWREFINNDWSNA-AIEDYSRYMVTLKSVLK 543
>sp|Q54HE0|COG5_DICDI Conserved oligomeric Golgi complex subunit 5 OS=Dictyostelium
discoideum GN=cog5 PE=3 SV=1
Length = 898
Score = 38.1 bits (87), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 64/119 (53%), Gaps = 14/119 (11%)
Query: 49 TEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRD 108
TE +N DD + K+ +NIKE+D+ +T+ S + + ++ D + ++ S +
Sbjct: 104 TENITTNYDD-LFKLANNIKELDQLTDTLKLGVSNLEESIQRMKNDISEPYNKVKSHIGQ 162
Query: 109 IKSKAEKSEEMVREITRDIKL-------LDTAKRNLTTAITCLNHLHML-----VTGVH 155
+K + + S E++R++ R I+L L R+L+ + C+N +++L +TG++
Sbjct: 163 LK-RVQDSCELLRKLIRYIQLVKKLKNHLQAGSRDLSKSAQCINEINLLKKDSDLTGIN 220
>sp|O01839|VPS51_CAEEL Vacuolar protein sorting-associated protein 51 homolog
OS=Caenorhabditis elegans GN=B0414.8 PE=1 SV=2
Length = 700
Score = 33.5 bits (75), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 39/202 (19%), Positives = 90/202 (44%), Gaps = 18/202 (8%)
Query: 36 DFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDS 95
DFD ++ L E+SL + +M S ++ +D ++ +V +
Sbjct: 11 DFDVEAFVVKLL-REKSLDGLVKEEEEMVSAVRRLDSDVHQIVYENYNKFLTATNTVRKI 69
Query: 96 QKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRN----LTTAITCLNHLHMLV 151
Q QL S+++ + +S + + ++ + KR+ L ++ +N L +
Sbjct: 70 QDEFTQLDSEMKSLS----RSMSTISTLIGNLDGVLGEKRDDILQLGSSYKVVNSLKHIF 125
Query: 152 TGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQI-QNTLSEQI 210
H LR+ ++R YGE++ + E + ++D + +L+ ++ + +N L +Q+
Sbjct: 126 DLPHVLRSEFDERNYGEVLRMFKLAEESLSQYKDVPTVQLVLQKSKKIYDMTENQLMDQL 185
Query: 211 TQDLKNAFQNPSSGSFVPSKQI 232
+NP+SG+ + S+ +
Sbjct: 186 --------RNPASGAELVSEAV 199
>sp|Q7TPM3|TRI17_MOUSE E3 ubiquitin-protein ligase TRIM17 OS=Mus musculus GN=Trim17 PE=2
SV=1
Length = 477
Score = 33.1 bits (74), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 27/152 (17%)
Query: 61 MKMESNIKEMDEEI-----------ETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDI 109
+K+E +IK + EE+ +T+ Q V + ++ LE+ QKV++ L + R I
Sbjct: 144 LKLEEDIKYLREEMMKTETLQAKEEQTLTEWQERVKERRERILEEFQKVVLFLVEEERRI 203
Query: 110 KSKAEKSEEMVREITRDIKL-LDTAKRNLTTAITCLNH------LHMLVTGVHSL-RTLI 161
+K EE +D K LD R+L + L L ML +L R
Sbjct: 204 LQVLKKEEEDTLGKLQDSKASLDHQSRSLDLILLQLEERSQQEPLQMLQDVKDTLNRKES 263
Query: 162 EQRQYGEIVMP--------LQGVIEVMKHFQD 185
QY E+V+P + G IEV+K FQ+
Sbjct: 264 FSVQYPEVVLPAAIKTLCRVPGQIEVLKSFQE 295
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 260,587,875
Number of Sequences: 539616
Number of extensions: 10397042
Number of successful extensions: 41494
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 208
Number of HSP's that attempted gapping in prelim test: 40958
Number of HSP's gapped (non-prelim): 721
length of query: 790
length of database: 191,569,459
effective HSP length: 126
effective length of query: 664
effective length of database: 123,577,843
effective search space: 82055687752
effective search space used: 82055687752
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)