Query psy17363
Match_columns 790
No_of_seqs 153 out of 270
Neff 7.0
Searched_HMMs 46136
Date Fri Aug 16 20:28:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17363.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17363hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2180|consensus 100.0 1E-163 3E-168 1351.8 35.0 727 14-759 2-743 (793)
2 PF04100 Vps53_N: Vps53-like, 100.0 9.6E-94 2.1E-98 792.2 24.6 371 35-405 2-383 (383)
3 PF06046 Sec6: Exocyst complex 100.0 9.5E-32 2.1E-36 315.8 7.4 435 270-753 102-548 (566)
4 COG5173 SEC6 Exocyst complex s 100.0 1.5E-26 3.3E-31 251.7 26.8 645 38-747 3-712 (742)
5 KOG2286|consensus 99.9 3.7E-20 8.1E-25 213.3 24.5 408 276-753 239-651 (667)
6 PF04437 RINT1_TIP1: RINT-1 / 99.8 1.8E-19 3.8E-24 208.4 2.7 414 251-712 3-455 (494)
7 PF10191 COG7: Golgi complex c 99.7 1.7E-14 3.6E-19 173.9 30.2 652 31-734 4-764 (766)
8 KOG2346|consensus 99.5 5.8E-14 1.2E-18 152.7 9.6 193 34-245 30-229 (636)
9 KOG0412|consensus 98.9 1.6E-06 3.5E-11 99.5 29.4 623 52-735 32-768 (773)
10 PF07393 Sec10: Exocyst comple 98.9 3.3E-07 7.2E-12 111.1 25.2 571 108-734 10-698 (710)
11 KOG2218|consensus 98.8 1.9E-06 4.1E-11 99.9 28.2 448 195-705 182-696 (737)
12 PF04091 Sec15: Exocyst comple 98.7 3.6E-08 7.8E-13 107.5 8.4 255 419-713 25-286 (311)
13 PF10475 DUF2450: Protein of u 98.6 5.1E-07 1.1E-11 97.8 15.2 217 34-257 10-227 (291)
14 PF06248 Zw10: Centromere/kine 98.4 7.5E-05 1.6E-09 88.9 27.6 471 53-566 9-566 (593)
15 KOG2176|consensus 98.3 0.00011 2.3E-09 86.3 24.6 130 39-172 33-162 (800)
16 KOG2307|consensus 98.0 0.009 2E-07 67.7 30.4 122 32-164 28-156 (705)
17 PF10392 COG5: Golgi transport 97.6 0.00034 7.4E-09 66.9 9.1 127 31-157 2-132 (132)
18 KOG4182|consensus 97.6 0.0095 2.1E-07 66.2 21.1 190 30-222 4-203 (828)
19 PF04124 Dor1: Dor1-like famil 97.5 0.0023 5.1E-08 70.9 15.5 225 51-327 7-238 (338)
20 PF15469 Sec5: Exocyst complex 97.5 0.00068 1.5E-08 68.4 10.1 108 99-216 42-150 (182)
21 PF05664 DUF810: Protein of un 97.4 0.011 2.4E-07 70.7 21.0 221 291-529 429-676 (677)
22 PF08700 Vps51: Vps51/Vps67; 97.4 0.00044 9.6E-09 60.9 6.5 82 32-121 1-82 (87)
23 KOG2347|consensus 97.3 0.078 1.7E-06 63.4 25.8 171 29-212 164-346 (934)
24 KOG2180|consensus 96.7 0.59 1.3E-05 55.1 24.8 144 608-757 438-594 (793)
25 PF06148 COG2: COG (conserved 96.6 0.00086 1.9E-08 64.2 1.6 122 28-160 4-132 (133)
26 PF04048 Sec8_exocyst: Sec8 ex 96.6 0.0069 1.5E-07 58.7 7.8 127 32-160 16-142 (142)
27 PF10474 DUF2451: Protein of u 96.5 0.0098 2.1E-07 62.5 8.7 212 517-747 13-230 (234)
28 KOG3745|consensus 95.9 1.1 2.4E-05 53.5 21.9 330 34-392 46-387 (763)
29 KOG2211|consensus 95.5 3.3 7.1E-05 48.8 23.4 55 417-472 453-508 (797)
30 KOG1011|consensus 94.1 1.2 2.5E-05 51.8 14.8 209 248-474 609-840 (1283)
31 KOG3691|consensus 93.8 0.7 1.5E-05 55.6 12.9 162 54-217 46-207 (982)
32 KOG2115|consensus 93.3 0.97 2.1E-05 54.7 13.1 168 52-220 237-404 (951)
33 KOG2069|consensus 90.8 3.4 7.4E-05 48.0 13.3 166 39-216 21-193 (581)
34 PF15290 Syntaphilin: Golgi-lo 88.6 0.55 1.2E-05 49.5 4.4 94 37-131 54-158 (305)
35 PF08318 COG4: COG4 transport 82.3 15 0.00033 40.7 12.3 261 200-470 2-329 (331)
36 KOG2033|consensus 81.0 40 0.00087 40.3 15.1 130 44-188 11-151 (863)
37 smart00762 Cog4 COG4 transport 80.5 20 0.00043 39.7 12.4 120 338-463 185-316 (324)
38 PF07426 Dynactin_p22: Dynacti 80.0 15 0.00033 36.9 10.2 68 124-191 75-144 (174)
39 PF14923 CCDC142: Coiled-coil 79.4 9.6 0.00021 43.7 9.5 116 582-705 260-380 (450)
40 PF08317 Spc7: Spc7 kinetochor 68.5 21 0.00045 39.5 8.7 93 51-143 170-262 (325)
41 COG4477 EzrA Negative regulato 68.1 25 0.00053 40.9 9.1 122 37-186 88-212 (570)
42 PF06160 EzrA: Septation ring 67.3 46 0.00099 39.7 11.8 122 37-186 85-209 (560)
43 PRK11637 AmiB activator; Provi 65.1 33 0.00073 39.3 9.8 13 368-380 310-322 (428)
44 KOG0994|consensus 63.7 1.6E+02 0.0034 37.6 14.9 88 41-131 1518-1625(1758)
45 KOG3691|consensus 62.7 16 0.00034 44.7 6.5 140 546-703 775-918 (982)
46 TIGR00606 rad50 rad50. This fa 61.3 94 0.002 41.2 14.0 118 88-208 968-1093(1311)
47 smart00787 Spc7 Spc7 kinetocho 60.0 42 0.00091 37.0 8.9 78 54-131 168-245 (312)
48 PF04156 IncA: IncA protein; 58.2 26 0.00057 35.3 6.6 57 91-147 131-187 (191)
49 KOG3543|consensus 57.1 50 0.0011 38.9 9.0 97 280-406 826-923 (1218)
50 PF11101 DUF2884: Protein of u 56.4 17 0.00036 38.2 4.9 63 88-150 165-228 (229)
51 PRK11637 AmiB activator; Provi 53.3 1.5E+02 0.0033 33.9 12.6 21 56-76 45-65 (428)
52 cd07638 BAR_ACAP2 The Bin/Amph 52.3 74 0.0016 32.7 8.6 159 99-267 4-170 (200)
53 PF07889 DUF1664: Protein of u 49.8 52 0.0011 31.3 6.5 72 55-130 51-122 (126)
54 PF11932 DUF3450: Protein of u 49.1 55 0.0012 34.7 7.5 68 89-165 55-122 (251)
55 COG4942 Membrane-bound metallo 49.1 1.5E+02 0.0031 34.0 10.9 39 93-131 62-100 (420)
56 PRK04778 septation ring format 48.5 53 0.0011 39.3 8.0 43 145-187 172-214 (569)
57 PF03357 Snf7: Snf7; InterPro 48.5 1.1E+02 0.0023 29.9 9.0 40 166-205 80-119 (171)
58 PF10779 XhlA: Haemolysin XhlA 46.5 49 0.0011 28.0 5.3 53 89-148 5-57 (71)
59 PF12128 DUF3584: Protein of u 43.4 4.5E+02 0.0098 34.6 15.8 51 232-289 965-1015(1201)
60 KOG3229|consensus 42.0 4.1E+02 0.0089 27.4 12.2 140 42-214 2-143 (227)
61 PF12761 End3: Actin cytoskele 40.4 63 0.0014 33.0 5.9 75 57-131 95-173 (195)
62 KOG3758|consensus 39.8 7.5E+02 0.016 29.8 18.2 116 232-352 227-379 (655)
63 PF04912 Dynamitin: Dynamitin 39.8 1.9E+02 0.0042 32.7 10.5 78 58-137 209-287 (388)
64 PF04108 APG17: Autophagy prot 39.0 3.1E+02 0.0068 31.4 12.0 90 95-188 253-346 (412)
65 cd07637 BAR_ACAP3 The Bin/Amph 38.5 1.4E+02 0.003 30.8 8.2 37 230-266 133-169 (200)
66 PF12998 ING: Inhibitor of gro 37.8 1.9E+02 0.0042 25.7 8.3 84 51-134 8-102 (105)
67 KOG0994|consensus 37.5 1.4E+02 0.003 38.1 8.9 62 63-125 1199-1260(1758)
68 PF06008 Laminin_I: Laminin Do 36.6 3.3E+02 0.007 29.0 11.1 16 98-113 60-75 (264)
69 PF14282 FlxA: FlxA-like prote 35.1 1.1E+02 0.0023 28.2 6.0 59 54-112 15-73 (106)
70 PF04518 Effector_1: Effector 34.6 1.4E+02 0.0031 33.7 8.0 122 7-148 146-276 (379)
71 PF14712 Snapin_Pallidin: Snap 34.3 2.3E+02 0.005 24.8 8.0 78 59-149 8-85 (92)
72 COG3883 Uncharacterized protei 33.7 2.1E+02 0.0046 30.7 8.7 29 153-181 116-144 (265)
73 PF14966 DNA_repr_REX1B: DNA r 32.7 1.7E+02 0.0037 26.4 6.9 87 59-145 7-97 (97)
74 PF07106 TBPIP: Tat binding pr 32.3 61 0.0013 32.1 4.4 63 49-111 70-137 (169)
75 PF04740 LXG: LXG domain of WX 32.2 1.9E+02 0.0041 29.3 8.1 33 16-48 27-61 (204)
76 PF05667 DUF812: Protein of un 31.4 2.9E+02 0.0062 33.4 10.4 74 91-164 329-406 (594)
77 COG1579 Zn-ribbon protein, pos 31.1 3E+02 0.0065 29.2 9.3 30 192-221 158-187 (239)
78 KOG0933|consensus 30.9 3.5E+02 0.0076 34.3 10.9 27 3-29 599-625 (1174)
79 PF13949 ALIX_LYPXL_bnd: ALIX 30.4 7E+02 0.015 26.6 14.1 19 10-28 3-21 (296)
80 PF00015 MCPsignal: Methyl-acc 29.7 1E+02 0.0022 31.0 5.7 109 49-163 91-202 (213)
81 PF10168 Nup88: Nuclear pore c 28.1 3.1E+02 0.0067 33.9 10.2 107 53-163 553-664 (717)
82 PRK03918 chromosome segregatio 27.9 4.8E+02 0.01 32.7 12.3 91 43-138 151-241 (880)
83 cd07602 BAR_RhoGAP_OPHN1-like 27.5 6.7E+02 0.015 26.0 11.0 37 230-266 140-176 (207)
84 PF07138 DUF1386: Protein of u 27.3 4.5E+02 0.0097 28.7 9.8 156 163-349 20-207 (324)
85 TIGR03185 DNA_S_dndD DNA sulfu 27.2 3.1E+02 0.0068 33.3 10.1 9 269-277 581-589 (650)
86 PRK04778 septation ring format 26.9 1.1E+03 0.025 28.0 16.3 26 232-257 539-564 (569)
87 PF09763 Sec3_C: Exocyst compl 26.8 1.1E+03 0.025 28.8 14.9 71 54-131 1-71 (701)
88 cd07639 BAR_ACAP1 The Bin/Amph 26.6 5.3E+02 0.011 26.6 10.0 48 92-146 4-51 (200)
89 PF13747 DUF4164: Domain of un 26.6 2.9E+02 0.0064 24.5 7.2 73 55-128 5-77 (89)
90 PF07889 DUF1664: Protein of u 26.6 2.4E+02 0.0051 26.9 6.9 21 57-77 42-62 (126)
91 PF09748 Med10: Transcription 25.6 4E+02 0.0087 25.3 8.4 69 120-188 5-77 (128)
92 PF04136 Sec34: Sec34-like fam 25.6 5.8E+02 0.013 25.1 9.9 24 97-120 49-72 (157)
93 PHA02562 46 endonuclease subun 25.6 3.1E+02 0.0067 32.4 9.5 26 52-77 300-325 (562)
94 PF12022 DUF3510: Domain of un 25.2 73 0.0016 30.1 3.3 55 584-640 24-78 (125)
95 PRK04863 mukB cell division pr 24.3 4.4E+02 0.0095 35.5 11.1 34 46-79 302-335 (1486)
96 PF01540 Lipoprotein_7: Adhesi 24.2 6.3E+02 0.014 27.1 10.0 35 186-221 237-271 (353)
97 PF06705 SF-assemblin: SF-asse 24.1 4.3E+02 0.0093 27.9 9.3 18 60-77 7-24 (247)
98 PRK12808 flagellin; Provisiona 23.7 2.9E+02 0.0062 32.1 8.1 75 121-210 50-125 (476)
99 PF10368 YkyA: Putative cell-w 23.6 4.4E+02 0.0094 27.2 8.9 79 129-207 90-177 (204)
100 PRK03918 chromosome segregatio 22.9 2.7E+02 0.0058 35.0 8.7 39 92-130 661-699 (880)
101 PF14745 WASH-7_N: WASH comple 22.8 1.4E+03 0.03 27.5 16.6 161 43-204 45-221 (567)
102 COG4477 EzrA Negative regulato 21.8 1.4E+03 0.03 27.2 15.1 24 232-255 539-562 (570)
103 TIGR03185 DNA_S_dndD DNA sulfu 21.7 3E+02 0.0065 33.5 8.5 18 60-77 393-410 (650)
104 TIGR00606 rad50 rad50. This fa 21.6 7.8E+02 0.017 32.8 12.8 81 60-142 794-881 (1311)
105 PF06103 DUF948: Bacterial pro 21.1 3.8E+02 0.0083 23.4 6.9 62 89-163 25-86 (90)
106 PRK08026 flagellin; Validated 20.1 3.9E+02 0.0085 31.7 8.6 75 119-208 50-125 (529)
No 1
>KOG2180|consensus
Probab=100.00 E-value=1.4e-163 Score=1351.84 Aligned_cols=727 Identities=44% Similarity=0.747 Sum_probs=692.6
Q ss_pred CchhHHHHHhhhCCCCCCCCCCCCchhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhh
Q psy17363 14 YPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALE 93 (790)
Q Consensus 14 ~~~~v~~~~~~~~~~~d~lds~dfd~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~ 93 (790)
++++|...|.+++|. |+|+.++|||++||+++||++||+++++++.+++++|++|+.+|+.|.|++++|+.++.
T Consensus 2 ~~~~v~~~I~q~~~t------~~f~~v~~in~lfp~eqSL~~id~li~ki~~eir~~d~~l~~~Vr~q~N~g~~~~e~l~ 75 (793)
T KOG2180|consen 2 LKGNVLYDINQMIPT------PEFNFVEYINELFPAEQSLTNIDSLIQKIQGEIRRVDKNLLAVVRTQENSGTRGKENLA 75 (793)
T ss_pred CCchHHHHHHHhcCC------cchhHHHHHHHhccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHH
Confidence 678999999999998 89999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccch
Q psy17363 94 DSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPL 173 (790)
Q Consensus 94 ~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll 173 (790)
+++.+|.+|+++|.+|+++|++||.||++||+|||+||.||||||+|||+|+|||||++||++|++|+++|+|++++++|
T Consensus 76 da~~ai~eL~~~i~eiks~ae~Te~~V~eiTrdIKqLD~AKkNLTtSiT~L~~L~MLv~~vesL~~l~~kr~y~e~a~~l 155 (793)
T KOG2180|consen 76 DAQAAIEELFQKIQEIKSVAESTEAMVQEITRDIKQLDFAKKNLTTSITTLHRLHMLVTGVESLNALLSKRSYGEAASPL 155 (793)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHhhccCCCChhHHHHHHHHHHHHHhHhHHHHHHHHHhhhcCCCCC-CCcChhHHHHHHhhhhccChhhhhhHHH
Q psy17363 174 QGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSG-SFVPSKQIAEALRVVSILDPKVKKNILE 252 (790)
Q Consensus 174 ~~~~~L~~~F~~y~~i~~i~~L~~~v~~l~~~l~~qI~~df~~~~~~~~~~-~~~~~~~l~daC~vvd~l~~~~k~~li~ 252 (790)
+++.+|++||++||++|+|+.|+..+++++..+..||+.||+++|.+++.. .+...+.|.|||+|+|+|+|++|+++|+
T Consensus 156 qai~~ll~~F~~Yk~v~~I~~Ls~si~~~k~~l~~qi~~df~~~F~~~~~~~~~~~l~~l~daC~v~d~lepsvreelIk 235 (793)
T KOG2180|consen 156 QAILQLLNHFIAYKSVDEIANLSESIDKLKKSLLSQIFQDFKAAFSGGETHEEALLLQKLSDACLVVDALEPSVREELIK 235 (793)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHHHHHHHHhCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999988773 2334578999999999999999999999
Q ss_pred HHHHhhccceeeeeccCcchhhHhhhhhHHHHHHhhhccccccccccCCCcccccchhhHHHHHhhhhhhhhhhhccccc
Q psy17363 253 WFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFE 332 (790)
Q Consensus 253 ~~~~~~L~ey~~~F~~~~ea~~Ld~i~rRy~Wf~r~L~~~e~~~~~iFP~~W~v~~~l~~~Fc~~Tr~~L~~iL~~~~~~ 332 (790)
|||.++|.+|..+|++++|+||||||+|||+||+|.|++|+++|+++||++|+|+.|||.+||+.||++|..||.++..+
T Consensus 236 wf~~qqL~ey~~IF~en~E~a~LDkidrRY~wfKr~L~~fe~k~~~iFP~dW~v~~RLt~eFc~~Tr~~L~~Il~~~~~~ 315 (793)
T KOG2180|consen 236 WFCSQQLEEYEQIFRENEEAASLDKLDRRYAWFKRLLRDFEEKWKPIFPADWHVAYRLTIEFCHQTRKQLESILKRRKKE 315 (793)
T ss_pred HHHHHHHHHHHHHHhccHhhhhhhhHHHHHHHHHHHHHHHHHhccccCCcccchhHHHHHHHHHHHHHHHHHHHHHhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred hhHHHHHHHHhccccHHHHHHhhccCccccc----------cccccccchhhhhccchhhhhhhhhccchHHHHHHHhhh
Q psy17363 333 IDVKLLLYAIQKTSNFEQLLEKRFADDETEG----------ENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAED 402 (790)
Q Consensus 333 idv~lLl~alq~T~~FE~~l~krf~~~~~~~----------~~~~~f~g~iS~~FepyL~~yv~~qdk~l~~~l~~~~~~ 402 (790)
+|+++||.|||+|++||++|++||+|.+..+ ....+|+|+||+||||||.+||++|++.|+++|++|+++
T Consensus 316 ~~v~lll~Alq~TleFE~~L~kRF~g~~~~~~~~~ns~~~~k~~~~f~~~isScFEPhLtlyI~~qek~l~ellek~v~e 395 (793)
T KOG2180|consen 316 PDVKLLLFALQSTLEFEKFLDKRFSGGTLTGKPEKNSQFEPKERFNFEGAISSCFEPHLTLYIESQEKELSELLEKFVSE 395 (793)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccccccccchhhHHHHhcccchhhhhhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999998643321 122479999999999999999999999999999999999
Q ss_pred HHHHHhchhhhhccCCCCCCcchhhHHHHhhhccccccccccC-CchHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccc
Q psy17363 403 SKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTG-EPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANT 481 (790)
Q Consensus 403 ~~~~~~~~~~~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g-~~L~~L~~~f~k~L~~Ya~~iL~~~lp~~~~~~~~~ 481 (790)
++++++|..+.| .++.|+|||+|||++||+|++||.+|+++ +||+++..+|+|||++|+++||.+.||...+
T Consensus 396 ~~~~~~p~~~~~--~~s~vlpSsadlF~~Ykkcltq~~~Ls~n~dpl~~~~~~f~k~LreYa~kil~~~lP~~t~----- 468 (793)
T KOG2180|consen 396 EKWDGEPKSNTD--EESLVLPSSADLFVAYKKCLTQCSELSENNDPLIALLAVFSKWLREYAQKILLGNLPDTTS----- 468 (793)
T ss_pred hccCCCCCCCcc--cccccCccHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHHhhccCCcccc-----
Confidence 998876666666 78999999999999999999999999999 9999999999999999999999999998765
Q ss_pred chhccccccccccccc-cc--cccCCcccccceeEeecchhHHHHhHHHHHHHHhhhcCCcccccccCCccchhHHHHHH
Q psy17363 482 TLASVSNITRDLGLIK-DQ--RTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVIS 558 (790)
Q Consensus 482 ~~s~~~~~~~~~~~~k-e~--~~~~~~~~~~~ic~ilnTAdYc~~t~~qLe~kl~e~i~~~~~~~i~~~~~~d~f~~vis 558 (790)
+.+|+++ ..+.+ |+ ..+++.+++..+|++++||+||.+|+.|||++++|+++..|.++|+|+.+++.|+.+++
T Consensus 469 ---~s~g~~v-~~l~~~e~~~~~~~t~d~l~di~~~lst~e~~~~tt~qle~kl~e~~~~~~~~~vs~s~~r~~~~~~~~ 544 (793)
T KOG2180|consen 469 ---SSDGAAV-YLLLRIEGAEYCRFTIDQLLDICCILSTAEYCLATTIQLEKKLKEIVDASYIKGVSFSEEREVFSSKIS 544 (793)
T ss_pred ---cccCchh-hhHHHhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHh
Confidence 3445544 34444 22 45788899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcchhhhhHHhhccccccccccCccccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHH
Q psy17363 559 SCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLV 638 (790)
Q Consensus 559 ~~i~~Lv~~le~~~~~al~~m~k~~W~~~e~vgd~S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~ 638 (790)
.|++.+|++++++|+|+++.|.++.|.+++.|||||+||+++..|+++.+|.+++++...++||++||.+++.+|+++|+
T Consensus 545 ~s~q~lv~D~e~a~~~~lt~msk~~~~~l~~vgDQss~v~s~~~h~~q~~~~i~~~~~~~r~~f~~fc~r~a~~f~~kf~ 624 (793)
T KOG2180|consen 545 VSLQFLVQDLENALDPDLTPMSKMQWQNLEGVGDQSSYVSSLNFHLSQFVPLIRDALALDRKYFAQFCVRLAASFIPKFL 624 (793)
T ss_pred hhHHHHHHHHHHhhCcccChHHHHHHHHhcCccccchhhHHHHHHHHhhhHHHHHHhccccchHHHhhHHHHhhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccccccccchhHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhh
Q psy17363 639 QHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCK 718 (790)
Q Consensus 639 ~~l~k~k~is~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~ 718 (790)
+.++||+|++.+|||||++|+|++|++|+.+|++++..+.++| |+++|++.|+++|||||+||+|.+|+++|+++|..
T Consensus 625 ~~l~R~k~~s~~g~EQLlldt~slK~~ll~lp~~~s~~n~~~~--y~~~~~~~m~~~e~iiK~lm~p~~~~~~f~e~yik 702 (793)
T KOG2180|consen 625 NVLFRAKPISVVGAEQLLLDTESLKDALLTLPPLRSLFNDKRP--YKRHVDNNMTQAEMIIKVLMTPLDPADDFYEQYIK 702 (793)
T ss_pred HHHHHhhhHhhhHHHHHHHHHHHHHHHhhcCCchhhhccccch--HHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999988888 99999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHhhccCCccccccccccccCCCCCCCCcc
Q psy17363 719 LLPESDMTEFQRILDMKGLKTNEKNNLINLFRPKNPSNTSS 759 (790)
Q Consensus 719 l~~d~s~~~f~kIL~lKg~~r~eq~~lle~f~~~~~~~~~~ 759 (790)
|+||.+.++|||||+|||++|.++...+..|+-.+++.++.
T Consensus 703 L~~~~~~a~~~~vLelKgv~r~d~~~~l~~~~~~~~~~~~e 743 (793)
T KOG2180|consen 703 LLPDPDSAEWQKVLELKGVKRDDALWKLLWFAYNLEADDSE 743 (793)
T ss_pred hcCCCcHHHHHHHHHhcCCcHHHHHHHHHHHHHhcccCCCc
Confidence 99999999999999999999999999999999998877733
No 2
>PF04100 Vps53_N: Vps53-like, N-terminal ; InterPro: IPR007234 Vps53 complexes with Vps52 and Vps54 to form a multi-subunit complex involved in regulating membrane trafficking events [].
Probab=100.00 E-value=9.6e-94 Score=792.24 Aligned_cols=371 Identities=51% Similarity=0.830 Sum_probs=352.2
Q ss_pred CCCchhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhh
Q psy17363 35 HDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAE 114 (790)
Q Consensus 35 ~dfd~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~ 114 (790)
|||||++|||++||+|+||++||++++.++.+++++|++|.++|++|..+++++..++++++..|.+|+.+|.+|+.+|+
T Consensus 2 ~dfdpv~~in~lfp~e~SL~~ld~~i~~l~~~i~~ld~eI~~~v~~q~~~~~~~~~~l~~a~~~i~~L~~~i~~ik~kA~ 81 (383)
T PF04100_consen 2 PDFDPVDYINELFPDEQSLSNLDELIAKLRKEIRELDEEIKELVREQSSSGQDAEEDLEEAQEAIQELFEKISEIKSKAE 81 (383)
T ss_pred CCCCHHHHHHHhCCChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCCCChhHHHH
Q psy17363 115 KSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILE 194 (790)
Q Consensus 115 ~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y~~i~~i~~ 194 (790)
+||.+|++||+||++||+||||||.|||+|||||||++++++|+.++++|+|++++++|++|.+|++||++|++||+|++
T Consensus 82 ~sE~~V~~it~dIk~LD~AKrNLT~SIT~LkrL~MLv~a~~qL~~~~~~r~Y~e~a~~L~av~~L~~~F~~yksi~~I~~ 161 (383)
T PF04100_consen 82 ESEQMVQEITRDIKQLDNAKRNLTQSITTLKRLQMLVTAVEQLKELAKKRQYKEIASLLQAVKELLEHFKPYKSIPQIAE 161 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHcccCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhhcCCCCCCCc-ChhHHHHHHhhhhccChhhhhhHHHHHHHhhccceeeeeccCcchh
Q psy17363 195 LRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFV-PSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSA 273 (790)
Q Consensus 195 L~~~v~~l~~~l~~qI~~df~~~~~~~~~~~~~-~~~~l~daC~vvd~l~~~~k~~li~~~~~~~L~ey~~~F~~~~ea~ 273 (790)
|+.++..++++|++||..||+.+|++++...++ ....|.+||.|||+||+++|+++|+|||+++|.+|+++|++++|+|
T Consensus 162 L~~~i~~l~~~L~~qI~~df~~~f~~~~~~~~~~~~~~l~~aC~vvd~L~~~~r~~li~wf~~~qL~eY~~iF~~~~e~~ 241 (383)
T PF04100_consen 162 LSKRIDQLQNELKEQIFEDFEELFGSQGDESPGQSSQQLSDACLVVDALGPDVREELIDWFCNKQLKEYRRIFRENDEAA 241 (383)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCcccccchHhHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHccccccc
Confidence 999999999999999999999999554433333 3577999999999999999999999999999999999999999999
Q ss_pred hHhhhhhHHHHHHhhhccccccccccCCCcccccchhhHHHHHhhhhhhhhhhhccccchhHHHHHHHHhccccHHHHHH
Q psy17363 274 WLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLE 353 (790)
Q Consensus 274 ~Ld~i~rRy~Wf~r~L~~~e~~~~~iFP~~W~v~~~l~~~Fc~~Tr~~L~~iL~~~~~~idv~lLl~alq~T~~FE~~l~ 353 (790)
|||||+|||+||+|.|++|+++|+.+||++|+||++||..||.+||+||..+|++.++++||++||.|||+|++||++|+
T Consensus 242 ~Ld~i~RRy~Wfkr~L~~~e~~~~~iFP~~W~v~~~L~~~Fc~~Tr~dL~~iL~~~~~~~dv~~Ll~aLq~T~~FE~~L~ 321 (383)
T PF04100_consen 242 SLDNIDRRYAWFKRLLKNFEEKFANIFPPSWRVPERLCVEFCEITRKDLSEILSKRKSELDVKLLLKALQKTLEFEKELA 321 (383)
T ss_pred chhhHHHHHHHHHHHHHHHHhhccccCCCcCcHHHHHHHHHHHHHHHHHHHHHhhcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999988889999999999999999999999
Q ss_pred hhccCcccc-----c-----cccccccchhhhhccchhhhhhhhhccchHHHHHHHhhhHHH
Q psy17363 354 KRFADDETE-----G-----ENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQ 405 (790)
Q Consensus 354 krf~~~~~~-----~-----~~~~~f~g~iS~~FepyL~~yv~~qdk~l~~~l~~~~~~~~~ 405 (790)
+||+|.... . ....+|.|+||+||||||++||++||+.|.++|.+|+++++|
T Consensus 322 ~rF~~~~~~~~~~~~~~e~~~~~~~f~g~IS~~FepyL~iyv~~qdk~L~~~l~~~~~~~~w 383 (383)
T PF04100_consen 322 KRFAGSTDESQEIEKKKEMKEIAENFKGIISSCFEPYLSIYVDSQDKNLSEKLDKFISEEKW 383 (383)
T ss_pred HHhcccccccccccccccccccccccccchHHhhHhhHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 999654321 0 011479999999999999999999999999999999988653
No 3
>PF06046 Sec6: Exocyst complex component Sec6; InterPro: IPR010326 Sec6 is a component of the multiprotein exocyst complex. Sec6 interacts with Sec8, Sec10 and Exo70.These exocyst proteins localise to regions of active exocytosis-at the growing ends of interphase cells and in the medial region of cells undergoing cytokinesis-in an F-actin-dependent and exocytosis- independent manner [].; PDB: 2FJI_2.
Probab=99.97 E-value=9.5e-32 Score=315.83 Aligned_cols=435 Identities=17% Similarity=0.274 Sum_probs=266.9
Q ss_pred cchhhHhhhhhHHHHHHhhhccccccccccCCCcccccchhhHHHHHhhhhhhhhhhhccccchhHHHHHHHHhccccHH
Q psy17363 270 EDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFE 349 (790)
Q Consensus 270 ~ea~~Ld~i~rRy~Wf~r~L~~~e~~~~~iFP~~W~v~~~l~~~Fc~~Tr~~L~~iL~~~~~~idv~lLl~alq~T~~FE 349 (790)
.+.+|+...-....|+...|..+...+.++|||+|+|...++..||....++|..+.. .+++..-++..|+|...|.
T Consensus 102 ~~~~~l~~~l~~l~~~~~DL~~v~~~~~~cfPp~~~I~~~y~~~YH~~l~~~l~~l~~---~~l~~~~ll~ll~W~~~Y~ 178 (566)
T PF06046_consen 102 ENKSWLARHLEALRWVLEDLQVVKDDVVPCFPPEYDIFNTYVSMYHNALSDHLQELIS---PDLEANDLLSLLSWVNTYP 178 (566)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHhCcccCCCCChHHHHHHHHHHHHHHHHHHHHcc---CCCCHHHHhhheechhhCh
Confidence 3344554444444499999999999999999999999999999999999999998843 4678889999999988888
Q ss_pred HHHHhhccCccccccccccccchhhhhccchhhhhhhhhccchHHHHHHHhhhHHHHHhchhhhhccCCCCCCcchhhHH
Q psy17363 350 QLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLF 429 (790)
Q Consensus 350 ~~l~krf~~~~~~~~~~~~f~g~iS~~FepyL~~yv~~qdk~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~vl~Ss~dLF 429 (790)
..|.+-+.. ...+..|....+.+..+.+.|++.-......||.+++.....+.... .+|+.+ .+|.++.|.+.|+|
T Consensus 179 ~~m~~~~l~-~~~~l~plL~~~~~~~L~~~Yl~~~~~~~~eW~~n~l~~E~~~w~~~--~~Pe~~-~dg~y~t~~~~dif 254 (566)
T PF06046_consen 179 SIMGHPDLA-IKEQLGPLLPDEKLEELEDDYLSRIQKKMKEWMDNILEQEVKDWSEE--KEPEED-EDGYYHTPLPVDIF 254 (566)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---S--EE--TTS-EE-HHHHHHH
T ss_pred HhhcCCccc-chhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--CCCCcC-CCCCeecCcHHHHH
Confidence 877664432 12245566677888999999999999999999999998888765442 234433 17899999999999
Q ss_pred HHhhhccccccccccCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhccccccccccccccccccCCccccc
Q psy17363 430 MFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQA 509 (790)
Q Consensus 430 ~~yk~~l~~~~~ls~g~~L~~L~~~f~k~L~~Ya~~iL~~~lp~~~~~~~~~~~s~~~~~~~~~~~~ke~~~~~~~~~~~ 509 (790)
+++++++..++...+++++..+...+..+|+.|+..+.. .+.+.-.. -.+.. .++ .......
T Consensus 255 qmi~qql~va~~~l~~~v~~~v~~~~~~~l~~~~~~~~~-~~~~~~~~-------~~~~~------~~~----~~~~~~e 316 (566)
T PF06046_consen 255 QMINQQLDVASESLQGKVLQRVLEELANFLKSYQDAWQE-FKEEHFKD-------RSSVK------PKE----NPPGYLE 316 (566)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH-------HHHHH------HCC------S-HHH
T ss_pred HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh-------hhccc------ccc----cccchHH
Confidence 999999999998999999999999999999999998743 22211000 00000 000 0123567
Q ss_pred ceeEeecchhHHHHhHHHHHHHHhhhcCCcccccc--cCCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhhcccccc
Q psy17363 510 KICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKI--DLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSV 587 (790)
Q Consensus 510 ~ic~ilnTAdYc~~t~~qLe~kl~e~i~~~~~~~i--~~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k~~W~~~ 587 (790)
++|+++|.+..|.+.+++++.++.+.+++.|.+++ +++...++|.++++.|.+.|+..++.+++|+++.++...|++.
T Consensus 317 yliA~~N~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~~if~Dl~p~~~~Lft~~W~~~ 396 (566)
T PF06046_consen 317 YLIAVANNCLRCRDYVESLEQKFEEKVSQKYMERISSDLEELMDGFDDLAKECCQYLLEEIFNDLKPHFKKLFTKKWYSG 396 (566)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHCTHHHHCTTTSGGGCTS
T ss_pred HHHHHhccHHHHHHHHHHHHHhcccccchHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcCcCcCc
Confidence 89999999999999999999999999998888775 9999999999999999999999999999999999999999863
Q ss_pred ccccCccccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHHhhhhccc------cccccchhHHHHHHHH
Q psy17363 588 ESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCK------PLSTVGAEQLLLDIHM 661 (790)
Q Consensus 588 e~vgd~S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l~k~k------~is~~gaeQLllD~~~ 661 (790)
..|..|+.++.++++.++.+|. +.||..|++.+.+.++..|+.++++-| .....+|+||..|.+.
T Consensus 397 -------~~~~~I~~Ti~dY~~d~~~~l~--~~~~~~l~~~~~~~~v~~Yl~~l~~kk~~~~~~~~~~~~a~~i~~D~~~ 467 (566)
T PF06046_consen 397 -------EAVDTICATIEDYLQDFQHYLR--PPYFQELIEELHDRVVKEYLRALMKKKIKFKNKEERKEAAERIRRDAEQ 467 (566)
T ss_dssp --------HHHHHHHHHHHHHHHHCCCS---HHHHHHHHHHHHHHHHHHHHHGGGG---------CCCCCHHHHHHHHHH
T ss_pred -------chHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHHHHHHHHHHhhhhcccHHHHHHHHHHHHHHHHH
Confidence 7999999999999999999887 789999999999999999999998632 2367899999999999
Q ss_pred HHHHhccCCCchhhhhhcCCccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhhh---CCCCchhHHHHHhhccC-C
Q psy17363 662 LKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKL---LPESDMTEFQRILDMKG-L 737 (790)
Q Consensus 662 Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~l---~~d~s~~~f~kIL~lKg-~ 737 (790)
++++|.++++ ...+...+..++.++.++.+. +++.+...|..| .||++...+..||.++| +
T Consensus 468 l~~~F~~~~~-------------~~~~~~~~~~l~~l~~ll~~~--d~~~i~l~~~~l~~~ypD~~~~~v~alL~~R~D~ 532 (566)
T PF06046_consen 468 LKSFFSKLGS-------------KSEVKSSFDVLEDLLELLRLE--DPEMIKLEVSSLLQKYPDISEEHVEALLALRGDL 532 (566)
T ss_dssp HHHHHHHHTH-------------HHHHHHHHHHHHHHHHHH-HS---CCCHHHHHHHHHCC-TT--SHHHHHHHCT-TT-
T ss_pred HHHHHHHhcc-------------cccccchHHHHHHHHHHHhcC--CHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCC
Confidence 9999998861 345678889999999999322 344465555555 48999999999999976 9
Q ss_pred ccccccccccccCCCC
Q psy17363 738 KTNEKNNLINLFRPKN 753 (790)
Q Consensus 738 ~r~eq~~lle~f~~~~ 753 (790)
+|++.+.+++..+...
T Consensus 533 ~r~~~~~il~~~~~~~ 548 (566)
T PF06046_consen 533 SRSEVKEILEILREII 548 (566)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887544
No 4
>COG5173 SEC6 Exocyst complex subunit SEC6 [Intracellular trafficking and secretion]
Probab=99.95 E-value=1.5e-26 Score=251.66 Aligned_cols=645 Identities=14% Similarity=0.164 Sum_probs=421.2
Q ss_pred chhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q psy17363 38 DSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSE 117 (790)
Q Consensus 38 d~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE 117 (790)
+|...+.+.++++.+|...-+++....+. .+|.......-+++.. -+-............+.++++.++.--
T Consensus 3 ~~l~q~~~~~~~d~~l~~v~Di~eq~~kf-~~l~~h~~~~~~e~~~-------~ln~~~n~~~~i~~~~~e~~~l~e~~r 74 (742)
T COG5173 3 KALTQLSETLRHDSDLQTVLDIIEQSTKF-EALEHHDGNLSAEISK-------CLNNILNISKRIYGLEEELKSLVEGKR 74 (742)
T ss_pred hHHHHHHHHhcCchHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence 57778888889998888877777665541 1222222111111110 111122222334444555666676666
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhh--hccccccchhhHHHHHhhccCCCC-------
Q psy17363 118 EMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQR--QYGEIVMPLQGVIEVMKHFQDSTD------- 188 (790)
Q Consensus 118 ~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r--~Y~e~~~ll~~~~~L~~~F~~y~~------- 188 (790)
.+|... +.+-++..--||.-.+-.+.-||--+|.--+.++.++... .-..|+++|.+|..|. ..++|+.
T Consensus 75 ~~V~~~-~~~fr~~k~Y~sv~~t~~~~s~l~n~V~~~d~ied~l~~~l~eD~dmPnLl~~H~kl~-~ardF~eq~~~~a~ 152 (742)
T COG5173 75 RNVRVL-KGFFRLVKDYRSVKMTCLAHSNLCNVVEFSDRIEDILGTVLTEDIDMPNLLAYHTKLY-DARDFGEQLDMYAT 152 (742)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHc-cHHHHhHHHHHHHh
Confidence 777665 6777777777777777777778888888888888777665 3458999999999886 2233322
Q ss_pred ------hhHHHHHHHHHHH---HHhHhHHHHHHHHHhhhcCCCCCCCcC--------------hhHHHHHH-hhhhc-cC
Q psy17363 189 ------IPQILELRSQVAQ---IQNTLSEQITQDLKNAFQNPSSGSFVP--------------SKQIAEAL-RVVSI-LD 243 (790)
Q Consensus 189 ------i~~i~~L~~~v~~---l~~~l~~qI~~df~~~~~~~~~~~~~~--------------~~~l~daC-~vvd~-l~ 243 (790)
--++..+...++. -++.+...+.+++-+...+|+.+..+. ...+++|- .+=+. -|
T Consensus 153 e~~~D~~~tv~k~fs~l~~~s~~Fd~lvl~~~~~iie~vksghi~~~~~ifkIve~EE~~De~~~~Irdaks~lp~SQD~ 232 (742)
T COG5173 153 EISHDDYVTVNKAFSTLEKNSLDFDALVLEISEEIIENVKSGHIEAMDKIFKIVEKEEARDELTRKIRDAKSELPKSQDN 232 (742)
T ss_pred hcccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCCCcCCC
Confidence 1122222222222 122334444444444333222110000 00111111 00011 11
Q ss_pred h------------------hhhhhH---HHHHHHhhccceeeeeccCcchhhHhhhhhHHHHHHhhhccccccccccCCC
Q psy17363 244 P------------------KVKKNI---LEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPP 302 (790)
Q Consensus 244 ~------------------~~k~~l---i~~~~~~~L~ey~~~F~~~~ea~~Ld~i~rRy~Wf~r~L~~~e~~~~~iFP~ 302 (790)
| ++|+.+ |+..+.--+.+.+.-+-+++ ..++|+| |+.+.|.-..+..+.+|||
T Consensus 233 P~~~~~~gmyr~~~~~~~r~lk~f~i~~i~~sv~e~F~r~r~~yi~d~--sgelnmD----fIf~dL~~i~e~i~~~~pp 306 (742)
T COG5173 233 PVLKEFYGMYRMYATRKTRKLKDFVIKSIEVSVKEKFDRLRNEYIFDN--SGELNMD----FIFKDLSFIRENISLSFPP 306 (742)
T ss_pred cchHHHHHHHHHHHhhhhhhHHHHHhhhhHHHHHHHHHHHHHHHHhcC--cchhhhH----HHHHHHHHHHHHccccCCc
Confidence 1 111222 23333333333333332222 4567777 9999999999999999999
Q ss_pred cccccchhhHHHHHhhhhhhhhhhhccccchhHHHHHHHHhccccHHHHHHhhccCccccccccccccchhhhhccchhh
Q psy17363 303 HWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLY 382 (790)
Q Consensus 303 ~W~v~~~l~~~Fc~~Tr~~L~~iL~~~~~~idv~lLl~alq~T~~FE~~l~krf~~~~~~~~~~~~f~g~iS~~FepyL~ 382 (790)
+|||...+...|.+....-+..... ..+++..+|..|....+|.+.+...|+.+.. +..+...+|.-+.+|+.|+.
T Consensus 307 ~~NI~~~y~~~YqecL~~L~td~v~---~~~~a~~iL~ii~f~~~y~~t~e~~f~f~~d-ev~~~l~d~e~g~L~~~Yt~ 382 (742)
T COG5173 307 FDNILTLYHNNYQECLLKLFTDEVT---ERLDAGEILAIIEFVGNYYNTIESKFNFIAD-EVGGRLLDNETGELLEKYTK 382 (742)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhh---cCCcchHHHHHHHHHHHHHHHHHHhCCccHH-HhcccccCCcchHHHHHHHH
Confidence 9999999999988887776665554 2458889999999999999999999986543 45556677888899999999
Q ss_pred hhhhhhccchHHHHHHHhhhHHHHHhchhhhhccCCCCCCcchhhHHHHhhhccccccccccCCchHHHHHHHHHHHHHH
Q psy17363 383 IYIESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHY 462 (790)
Q Consensus 383 ~yv~~qdk~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g~~L~~L~~~f~k~L~~Y 462 (790)
+.+.+..+|.+++....+..+-.+.. +|..| ++|.+++|+...+|+|+++++..++--.+.+++-.+...|...+.+|
T Consensus 383 l~~~Kl~EWv~nl~~~evd~F~~R~~-ep~~D-sdg~l~l~Gt~~~fQmitqQ~e~ia~tn~sdvvgiV~~~i~~~~tk~ 460 (742)
T COG5173 383 LAQEKLKEWVMNLTRIEVDKFYARNE-EPSRD-SDGKLVLPGTVSLFQMITQQLEPIAFTNRSDVVGIVFAHITRTITKY 460 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCC-CCCcC-CCcCccCccHHHHHHHHHHHhhhhhcCCccchhhhhHHHHHHHHHHH
Confidence 99999999999987444433333222 23333 26899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhccc-cccchhccccccccccccccccccCCcccccceeEeecchhHHHHhHHHHHHHHhhhcCCccc
Q psy17363 463 AHKVLQQNVSKQAGQT-ANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLA 541 (790)
Q Consensus 463 a~~iL~~~lp~~~~~~-~~~~~s~~~~~~~~~~~~ke~~~~~~~~~~~~ic~ilnTAdYc~~t~~qLe~kl~e~i~~~~~ 541 (790)
+..|-......-...- |+.=.++-||+. |+.+..++++ +.-|+|. ..+--+.-+.|...|.
T Consensus 461 q~~wks~l~ee~~kq~~~npEs~~p~Gl~-------eyliav~Nd~-------lK~A~y~----~~~~sntfeLitseye 522 (742)
T COG5173 461 QEIWKSNLVEEMDKQFKSNPESSSPAGLE-------EYLIAVGNDG-------LKIAQYI----TSLPSNTFELITSEYE 522 (742)
T ss_pred HHHHHHHHHHHHHHHhcCCCccCCcchHH-------HHHHHHcCCc-------chHHHHH----HhcchhhhhhhhHHHH
Confidence 9987443333211100 000001123432 3455555555 4466666 4444444444555554
Q ss_pred ccc--cCCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhhccccccccccCccccchhhhhhhhccccceecccccch
Q psy17363 542 NKI--DLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSR 619 (790)
Q Consensus 542 ~~i--~~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k~~W~~~e~vgd~S~Yv~~i~~~l~~~~~~i~~~L~~~~ 619 (790)
+.+ .|..+.|||.+|...+...|+..+..+|+||+...+..+|+. ++-+..|+.++++++.++..+++ +
T Consensus 523 ~d~~~~lgkTvDgfi~I~~~s~~~l~~~i~~d~~pa~~~iF~~~Wy~-------gS~~k~IvdTl~dyl~D~~~~M~--~ 593 (742)
T COG5173 523 NDEVKELGKTVDGFIDILKASNTFLAEFIIYDCQPAIDKIFTDEWYG-------GSVTKVIVDTLQDYLSDYQNTMS--E 593 (742)
T ss_pred HHHHHHhcccchhHHHHHhhhhHHHHHHHHHhhhhhHHHhcCccccc-------cchHHHHHHHHHHHHHHHHHhcc--c
Confidence 444 788899999999999999999999999999999999999985 24566788888888888888777 6
Q ss_pred hHHHHHHHhhhhchhHHHHhhhhccccc-c-ccchhHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeeccchhHHH
Q psy17363 620 KYFTQFCVKFANSFIPKLVQHVFKCKPL-S-TVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEM 697 (790)
Q Consensus 620 ~yf~~fc~k~~~~~i~~f~~~l~k~k~i-s-~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~E~ 697 (790)
..|-.|.+.+..+++.+|+.+|.+-+.. . +-+.+||..|..-+...|..+-. | ..|... ++.
T Consensus 594 ~lFv~Fi~e~s~~~vi~yl~~l~~k~a~~~~~na~~~lksD~~~~y~~f~~y~d---------~----e~~k~t---l~p 657 (742)
T COG5173 594 YLFVTFIHELSMSIVIAYLKQLGRKRASIAEENASRTLKSDHTKLYEMFSGYGD---------P----EDVKTT---LSP 657 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHHHhhCC---------H----HHHHHH---HHH
Confidence 8899999999999999999999866543 2 33689999999999999987642 1 122222 444
Q ss_pred HHHHHHhh-cCCCchhHHHhh---hhCCCCchhHHHHHhhc-cCCcccccccccc
Q psy17363 698 ILKLVMAS-AEPDICFVEQFC---KLLPESDMTEFQRILDM-KGLKTNEKNNLIN 747 (790)
Q Consensus 698 iLKll~~p-~~~~~~fv~~y~---~l~~d~s~~~f~kIL~l-Kg~~r~eq~~lle 747 (790)
++|+++-= ..+.+.|.+-|. ..-||...+-...||.. +++.++-.++..+
T Consensus 658 I~k~~~~m~~~~~d~~~~~~~~lkeiYwD~~~sli~~Ilk~R~Dl~~sIiqk~t~ 712 (742)
T COG5173 658 ILKIIPLMDTRNDDLFIVEVKSLKEIYWDIKKSLIKTILKKRQDLTESIIQKKTL 712 (742)
T ss_pred HHHHHcccccCCchHHHHHHHHHHHHhccchHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 66655432 223444555333 33489989999999998 8998884443333
No 5
>KOG2286|consensus
Probab=99.86 E-value=3.7e-20 Score=213.27 Aligned_cols=408 Identities=13% Similarity=0.146 Sum_probs=289.6
Q ss_pred hhhhhHHHHHHhhhccccccccccCCCcccccchhhHHHHHhhhhhhhhhhhccccchhHHHHHHHHhccc-cHHHHHHh
Q psy17363 276 DKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTS-NFEQLLEK 354 (790)
Q Consensus 276 d~i~rRy~Wf~r~L~~~e~~~~~iFP~~W~v~~~l~~~Fc~~Tr~~L~~iL~~~~~~idv~lLl~alq~T~-~FE~~l~k 354 (790)
..+.|+ |++..|........++|||+|++...+...||......+..+-+.+ . +..-.+..+.|.. ++++..-.
T Consensus 239 ~e~~r~--~i~EdL~~~~~~l~~cfpp~~~if~~~l~~Yh~~ls~ll~dl~s~~-l--~~~eil~llawV~~~~~~~~l~ 313 (667)
T KOG2286|consen 239 LEVLRF--VIREDLRVAKRVLVPCFPPHYNIFSAYLELYHQALSDLLRDLASEA-L--ELREILQLLAWVRNEYYTPLLQ 313 (667)
T ss_pred HHHHHH--HHHHHHHHHHHhhcccCCchhHHHHHHHHHHHHHHHHHHHHHhhcc-c--cHHHHHHHHHHHHHHhcChhhh
Confidence 345555 9999999999999999999999999999999988887777665533 2 4445666667766 66666555
Q ss_pred hccCccccccccccccchhhhhccchhhhhhhhhccchHHHHHHHhhhHHHHHhchhhhhccCCCCCCcchhhHHHHhhh
Q psy17363 355 RFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKK 434 (790)
Q Consensus 355 rf~~~~~~~~~~~~f~g~iS~~FepyL~~yv~~qdk~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~vl~Ss~dLF~~yk~ 434 (790)
.+.+... ...+..-.|.+...++-|+..-.....+||.++..--....-...+ |+.| .+|....|...++|+++.+
T Consensus 314 ~~~~~~~-~l~p~l~~~~v~~Ll~~Y~~~~t~n~~ewl~~~~e~e~~~~~~~~~--P~rd-~~g~~~t~~p~~~fqmi~q 389 (667)
T KOG2286|consen 314 LNVDVLR-ALGPLLRPKHVVALLDLYLERATANMKEWLMNALELEAAAWAKETE--PPRD-EEGYLYTPGPVIFFQMITQ 389 (667)
T ss_pred ccchhhh-hhcCccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--CCcc-ccccccCcccHHHHHhhHH
Confidence 5543211 1334455667888888999888888888888877655554333222 3333 1679999999999999999
Q ss_pred ccccccccccCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhccccccccccccccccccCCcccccceeEe
Q psy17363 435 SLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCV 514 (790)
Q Consensus 435 ~l~~~~~ls~g~~L~~L~~~f~k~L~~Ya~~iL~~~lp~~~~~~~~~~~s~~~~~~~~~~~~ke~~~~~~~~~~~~ic~i 514 (790)
++..++..+.. +.........+.+-+++.......+....+ + ++. -...-..++.++
T Consensus 390 ~l~~~~~~~~D-l~~~~~~~~~~~v~~f~~~~~~~~~~~~e~-----------------~--~~~---~~~~l~~y~iA~ 446 (667)
T KOG2286|consen 390 QLQVAAATSSD-LSGKILRSLLSEVPSFARNYPKAQDEDQES-----------------H--RRE---QPEGLREYLIAN 446 (667)
T ss_pred HHHHHHhhHHH-HHHHHHHHHHHHhHHHHHHHHHhHHHHHHh-----------------c--hhc---ccccHHHHHHHH
Confidence 99998877332 111111222222222222111111100000 0 000 012234567888
Q ss_pred ecchhHHHHhHHHHHHHHhhhcCCcccccccCCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhhccccccccccCcc
Q psy17363 515 LTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQS 594 (790)
Q Consensus 515 lnTAdYc~~t~~qLe~kl~e~i~~~~~~~i~~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k~~W~~~e~vgd~S 594 (790)
+|.+..|..-+.++-.+. + .+....|+|..+.+.+...|+..++.||+|++..++...|...
T Consensus 447 ~N~~~~~a~~~~~~~~~~---------d--~~~~~l~~~~~i~~~~~~~l~e~~~~d~~~~~~~lf~~~W~~g------- 508 (667)
T KOG2286|consen 447 INNNLKMAMLMVNLKSKY---------D--TLKGLLDGFIEIAKHGVSGLLEEIFLDLQPLLNKLFTKEWCAG------- 508 (667)
T ss_pred HhchhHHHHHHHHHHhcc---------c--hhHHHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhhch-------
Confidence 999999977777776665 1 4556789999999999999999999999999999999999853
Q ss_pred ccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHHhhhhccccccccchhHHHHHHHHHHHHhccCCCchh
Q psy17363 595 GYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGS 674 (790)
Q Consensus 595 ~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l~k~k~is~~gaeQLllD~~~Lk~~ll~lp~~~~ 674 (790)
.-+..|+.|+.+++|++..+.. .||.+|.+.+...++..|+.+|.+-+-...-++|+|+.|...++.+|.++-+
T Consensus 509 ~~~~~Iv~T~~dy~~D~~~~~~---~~f~~fi~e~~~~~v~~Yl~~l~~kr~~~~~~~~~i~~d~~~~~~~f~~~~~--- 582 (667)
T KOG2286|consen 509 SVTENIVATLDDYLPDFKELMG---EYFVRFIEEASLELVIEYLRALSKKRASIQELIEKIKSDAETLYHFFRKYGS--- 582 (667)
T ss_pred hhHHHHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHHhCc---
Confidence 3456688999999999988765 5699999999999999999999876654447899999999999999998754
Q ss_pred hhhhcCCccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhhhC---CCCchhHHHHHhhc-cCCccccccccccccC
Q psy17363 675 QVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLL---PESDMTEFQRILDM-KGLKTNEKNNLINLFR 750 (790)
Q Consensus 675 ~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~l~---~d~s~~~f~kIL~l-Kg~~r~eq~~lle~f~ 750 (790)
+ |+.-..-+..+-++++.- +|+.|..-|..++ ||++.+.+.+||.+ +|+++++.+.+++..+
T Consensus 583 ~------------~~~~~~~~~~l~el~~~~--d~d~~~~~~~~l~~~YpD~~~~~l~~il~~R~dls~~~~k~i~~~~~ 648 (667)
T KOG2286|consen 583 D------------VDTLISTISTLAELISLQ--DPDLIKLEVSTLLECYPDIPKDHLEAILKIRGDLSRSEKKKIVDILK 648 (667)
T ss_pred c------------hhhhhhhhHHHHHHHhcC--ChHHHHHHHHHHHHHCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 1 222233455555555553 4566666555554 99999999999999 7999999999998876
Q ss_pred CCC
Q psy17363 751 PKN 753 (790)
Q Consensus 751 ~~~ 753 (790)
.-.
T Consensus 649 ~~~ 651 (667)
T KOG2286|consen 649 ESM 651 (667)
T ss_pred HHH
Confidence 433
No 6
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=99.76 E-value=1.8e-19 Score=208.36 Aligned_cols=414 Identities=14% Similarity=0.159 Sum_probs=273.6
Q ss_pred HHHHHHhhccceeeeeccCcchhhHhhhhhHHHHHHhhhcccccc----ccccCCC----cccccchhhHHHHHhhhhhh
Q psy17363 251 LEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDK----FGTLFPP----HWQLSEKITLEFCERTRSEL 322 (790)
Q Consensus 251 i~~~~~~~L~ey~~~F~~~~ea~~Ld~i~rRy~Wf~r~L~~~e~~----~~~iFP~----~W~v~~~l~~~Fc~~Tr~~L 322 (790)
|+.+++.....++.+|.++.+++++|+.+=-|+|+.+.+.++.+. +.+++-+ +..+...++..-....|+.|
T Consensus 3 ~~~l~~p~~~rF~yHF~~~r~Tn~~~kPEw~f~~i~~~~~~~~~~l~~~iq~~~~~~~~~~~~~~~~fi~~ll~~~~~Kl 82 (494)
T PF04437_consen 3 IDVLVNPFKKRFRYHFMGNRPTNRLDKPEWYFTFILKWIRDHRDFLEECIQPLLDENGLTYIDAREEFIRGLLPPVREKL 82 (494)
T ss_dssp HHHHCHHHHHHHHHHT----S---CCCHHHHHHHHHHHHHHH---HHHHHHHH-BGGTB-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCCcCcccchHHHHHHHHHHHHHhhHHHHHHcCHHHHhcCCccccHHHHHHHHHHHHHHHHH
Confidence 456677778889999999999999999886688888888877443 4555554 34555556666667777777
Q ss_pred hhhhhccccchhHHHHHHHHhccccHHHHHHhhccCccccccccccccchhhhhc--cchhhhhhhhhccchHHHHHHHh
Q psy17363 323 GKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCF--QNYLYIYIESLDRNLSDLIDRFA 400 (790)
Q Consensus 323 ~~iL~~~~~~idv~lLl~alq~T~~FE~~l~krf~~~~~~~~~~~~f~g~iS~~F--epyL~~yv~~qdk~l~~~l~~~~ 400 (790)
...+.... -|..+|.+.+..++.|++.|...|++.. .+.|....+| +.++..|++.|.+.-.+.++..+
T Consensus 83 ~~~l~~~~--~~~~~l~HlI~e~~~FD~~L~~~~~y~~-------d~~~~~~~vL~~~~~~~~Wl~~E~~~a~~r~~~i~ 153 (494)
T PF04437_consen 83 RSDLPELL--DDPSLLSHLIDEILSFDKELRSLYGYPG-------DWQGSTLDVLCQPDWFDRWLNAEKEFALERFDEII 153 (494)
T ss_dssp HHHH--TT--S-HHHHHHHHHHHHHHHHHHHHTS---S-------------CGGGS-HHHHHHHHHHHHHHHHHHHH---
T ss_pred HHHHHhhc--cChhHHHHHHHHHHHHHHHHHHHcCCCC-------ccchhHHHHhcchHHHHHHHHHHHHHHHHHHhhhc
Confidence 76664322 2778999999999999999999987421 1778888888 78999999999998666666555
Q ss_pred hhHHHHHhchhhhhc----cCCCCCCcchhhHHHHhhhccccccccccC-CchHHHHHHHHHHHHHHHHHHHhhhhhhhh
Q psy17363 401 EDSKQVLNNINETCE----TSAAPVLPSCADLFMFYKKSLVQCTQLSTG-EPMVALATTFQQYLRHYAHKVLQQNVSKQA 475 (790)
Q Consensus 401 ~~~~~~~~~~~~~d~----~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g-~~L~~L~~~f~k~L~~Ya~~iL~~~lp~~~ 475 (790)
+. +++..++.|+ .+...+..|+..+-.......+++..|..- .-+..|..+....|..|..++ ...+....
T Consensus 154 ~s---~~aw~~~~~~~~~~~~~~k~t~~A~~~~~Ll~~it~ry~~L~~~~~rl~Fl~~iql~lld~~~~~L-~~~~~~~~ 229 (494)
T PF04437_consen 154 SS---PDAWQIDYDDVEADSDELKPTKSAERFVKLLESITDRYRPLPSLSHRLRFLIDIQLPLLDDYHDRL-SQSLEAFE 229 (494)
T ss_dssp ---------------HTTSSGGGG-GGHHHHHHHHHHHHHHHHHHHHH---GG--GHHHHHHHHHHTHHHH-HHHHHHHH
T ss_pred cc---chhhhhhhccccCCchhhcchHHHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHh
Confidence 43 2222233221 123445557777777777777777776553 346778899999999999985 66655432
Q ss_pred ccccccchhccccccccccccccccccCCcccccceeEeecchhHHHHhHHHHHHHHh-------h----------hcCC
Q psy17363 476 GQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLK-------E----------KVDP 538 (790)
Q Consensus 476 ~~~~~~~~s~~~~~~~~~~~~ke~~~~~~~~~~~~ic~ilnTAdYc~~t~~qLe~kl~-------e----------~i~~ 538 (790)
.. +|+ +. ...+..++..+|.++|+|.||..++.+.++.+- + ....
T Consensus 230 ~~-----~s~--~~-----------~~~~~~~l~~l~~~lnsa~yi~~~L~eW~e~~~Flq~~~~~~~~~~~~~~~~~~~ 291 (494)
T PF04437_consen 230 SS-----TST--LA-----------SLSGDSGLERLCKILNSANYIENVLREWSEDVFFLQMRAKESESSNNSLEDIANE 291 (494)
T ss_dssp HT-----------S-----------CEEHHHHHHHHHHHHHHHHHHHHHHHHHCTSHHHH------------HHHHHHHH
T ss_pred hc-----ccc--hh-----------hccCCchHHHHHHHHHHHHHHHHHHHHhcCCCeeehhhccchhhccccccccccc
Confidence 20 001 00 011234678899999999999999998665321 1 1110
Q ss_pred c-ccccccCCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhh-ccccccccc-----cCccccchhhhhhhhccccce
Q psy17363 539 N-LANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVK-TNWSSVESV-----GDQSGYVTAITSHLKQSVPLI 611 (790)
Q Consensus 539 ~-~~~~i~~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k-~~W~~~e~v-----gd~S~Yv~~i~~~l~~~~~~i 611 (790)
. -.+.--|+++...|..+...+...+|..+...++..++++.+ .+|.+.+.. ...|+.+......|+..+..+
T Consensus 292 ~~~~~~siFde~i~~y~~l~~~~~~~iv~~v~~~~k~~lk~Y~k~~~W~~~~~~~~~~~~~~S~el~~~L~~L~~~L~~L 371 (494)
T PF04437_consen 292 TSSEEGSIFDETISAYEKLRKRMLESIVDRVVKEFKASLKAYFKRSQWSSIESPSDSSPLSPSPELVPALSLLRSRLSFL 371 (494)
T ss_dssp HTT--S-TTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHT--GGGT-------------GGGHHHHHHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccCCCCcccccccccCCCCHHHHHHHHHHHHHHHHH
Confidence 0 023447999999999999999999999999999999999999 999987655 336788888899999999999
Q ss_pred ecccccchhHHHHHHHhhhhchhHHHHhhhhccccccccchhHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeecc
Q psy17363 612 RTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKG 691 (790)
Q Consensus 612 ~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l~k~k~is~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~ 691 (790)
+..|+ +..|+.+...+++.+..-+++.|+...+||..||.||..|+..|...|.. |+....+.
T Consensus 372 ~~~L~--~~~f~~i~r~ia~~l~~~l~~~Il~~n~Fs~~Ga~Ql~~D~~~L~~~~~~---------------~~~~p~~~ 434 (494)
T PF04437_consen 372 ERSLP--PADFRRIWRRIASKLDDYLWESILMSNKFSRAGAAQLQFDMRALFSVFSQ---------------YTPRPEAF 434 (494)
T ss_dssp HTS----HHHHHHHHHHHHHHHHHHHHHTTTTTS-B-HHHHHHHHHHHHHHHTTS-----------------TTSGG-HH
T ss_pred HHHcC--HHHHHHHHHHHHHHHHHHHHHHhhhcCeeChhHHHHHHHHHHHHHHHHHh---------------hccCHHHH
Confidence 98887 88999999999999999999999999999999999999999999988875 23334678
Q ss_pred chhHHHHHHHHHhhcCCCchh
Q psy17363 692 MTKAEMILKLVMASAEPDICF 712 (790)
Q Consensus 692 ~~k~E~iLKll~~p~~~~~~f 712 (790)
|.++...+++|..|.+++..+
T Consensus 435 f~~l~E~~~LL~L~~~~~~~~ 455 (494)
T PF04437_consen 435 FKRLREACKLLNLPYGSAKLL 455 (494)
T ss_dssp HHHHHHHHHHHGGGG-CGG--
T ss_pred HHHHHHHHHHcCCCCcchhhh
Confidence 889999999999998775433
No 7
>PF10191 COG7: Golgi complex component 7 (COG7); InterPro: IPR019335 The conserved oligomeric Golgi (COG) complex is an eight-subunit (Cog1-8) peripheral Golgi protein involved in membrane trafficking and glycoconjugate synthesis []. COG7 is required for normal Golgi morphology and trafficking. Mutation in COG7 causes a congenital disorder of glycosylation [].
Probab=99.67 E-value=1.7e-14 Score=173.89 Aligned_cols=652 Identities=16% Similarity=0.240 Sum_probs=397.5
Q ss_pred CCCCCCCchhhhhhcccCcc---cccCchhHHHHHhhhchhhhHHHHHHHHhcccc----CCcchhhhhhhhHHHHHHHH
Q psy17363 31 VLDDHDFDSVQYINSLFPTE---QSLSNIDDVIMKMESNIKEMDEEIETVVRSQSG----VGQDGKKALEDSQKVIMQLF 103 (790)
Q Consensus 31 ~lds~dfd~~~~In~lfp~e---~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~----~~~~~~~~l~~~~~~i~~L~ 103 (790)
.|.+++|||...||.-|..- ++...+|..+..+..+.+..-+++...+++... .--....++..++.+...|.
T Consensus 4 ~f~~~~FD~~~WIN~~~~~~~~~~~~~~~d~~ls~l~~kLql~~qe~~~~le~~~~q~l~~~Pr~~~ev~~l~~ea~~L~ 83 (766)
T PF10191_consen 4 AFSDDDFDVKAWINAALKSRSKDEALEKADAHLSSLVMKLQLYSQEVNASLEETSQQALQRVPRVLREVDRLRQEAASLQ 83 (766)
T ss_pred hhCcCCCCHHHHHHHHhhccCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 47789999999999988763 345566666777666666666666666665443 22335567888899999999
Q ss_pred HHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhc
Q psy17363 104 SQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHF 183 (790)
Q Consensus 104 ~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F 183 (790)
++|..|++..+..|..-.....-+.+||.+|.+++.+-.+|+-=.-+.+...++..++..++|..++.-|..+.+=+..
T Consensus 84 ~~~~~v~~~~~~~e~~t~~s~~~L~~ld~vK~rm~~a~~~L~EA~~w~~l~~~v~~~~~~~d~~~~a~~l~~m~~sL~~- 162 (766)
T PF10191_consen 84 EQMASVQEEIKAVEQDTAQSMAQLAELDSVKSRMEAARETLQEADNWSTLSAEVDDLFESGDIAKIADRLAEMQRSLAV- 162 (766)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-
Confidence 9999999887666664444557799999999999999999999999999999999999999999999999998888855
Q ss_pred cCCCChhHHHHHHHHHHHHHhHhHHHHHHHHHhhhcCCCCCCCcChhHHHHHHhhhhccChhhhhhHHHHHHHhh---cc
Q psy17363 184 QDSTDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQ---LS 260 (790)
Q Consensus 184 ~~y~~i~~i~~L~~~v~~l~~~l~~qI~~df~~~~~~~~~~~~~~~~~l~daC~vvd~l~~~~k~~li~~~~~~~---L~ 260 (790)
+.++|....-...++.++++|...+.-.+..+|...+. ...+.-..|...+|..- .+.++|++-. |.
T Consensus 163 --l~~~pd~~~r~~~le~l~nrLEa~vsp~Lv~al~~~~~------~~~~~~~~if~~i~R~~--~l~~~Y~~~r~~~l~ 232 (766)
T PF10191_consen 163 --LQDVPDYEERRQQLEALKNRLEALVSPQLVQALNSRDV------DAAKEYVKIFSSIGREP--QLEQYYCKCRKAPLQ 232 (766)
T ss_pred --HcCCCchhHHHHHHHHHHHHHHHHhhHHHHHHHHhcCH------HHHHHHHHHHHHcCCHH--HHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999888875431 22333334455555321 2333333322 22
Q ss_pred ceeeeeccCc----chhhHhhhhhHHHHHHhhhccccc---cccccCCCccc-ccchhhHHHHHhh---hhhhhhhhhcc
Q psy17363 261 EYLVLFDESE----DSAWLDKIDKRYAWFKKQLLHVED---KFGTLFPPHWQ-LSEKITLEFCERT---RSELGKIMSKR 329 (790)
Q Consensus 261 ey~~~F~~~~----ea~~Ld~i~rRy~Wf~r~L~~~e~---~~~~iFP~~W~-v~~~l~~~Fc~~T---r~~L~~iL~~~ 329 (790)
.-+..+...+ -+.||.+ |+-..|..++. ....+||..-. +...++..+..++ ...|...+...
T Consensus 233 ~~W~~~~~~~~~~~~~~~L~~------fyd~ll~~l~~E~~w~~~vF~~~~~~~~~ll~~~L~~L~PS~~~~l~~al~~~ 306 (766)
T PF10191_consen 233 RLWQEYCQSDQSQSFAEWLPS------FYDELLSLLHQELKWCSQVFPDESPVLPKLLAETLSALQPSFPSRLSSALKRA 306 (766)
T ss_pred HHHHHHhhhccchhHHHHHHH------HHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhcCccHHHHHHHHHhhc
Confidence 2222232222 2345533 44444444444 46889999886 4444555555443 44555556433
Q ss_pred ccchhHHHHHHHHhccccHHHHHHhhccCccccccccccccchhhhhccc---hhhhhhhhhccchHHHHHHHhhhHHHH
Q psy17363 330 KFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQN---YLYIYIESLDRNLSDLIDRFAEDSKQV 406 (790)
Q Consensus 330 ~~~idv~lLl~alq~T~~FE~~l~krf~~~~~~~~~~~~f~g~iS~~Fep---yL~~yv~~qdk~l~~~l~~~~~~~~~~ 406 (790)
.+..-...|+.+.+.|..|-+.+...|...... .........+..+|+| |..-|-+.|.+.|..-+......
T Consensus 307 ~~~~~L~~L~~l~~~t~~Fa~~l~~~l~~~~~~-~~l~~~~~l~~al~~PF~~~q~~Yg~lE~~~L~~~L~~l~~~---- 381 (766)
T PF10191_consen 307 GPETKLETLIELYQATEHFARNLEHLLSSLPGE-SNLSKVEELLQALFEPFKPYQQRYGELERRFLSAQLSALDLE---- 381 (766)
T ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhccccc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC----
Confidence 333224589999999999999999988642111 1112223344445555 55667777777666655433211
Q ss_pred HhchhhhhccCCCCCCcchhhHHHHhhhccccccccccCCchHHHHHHHHHHHHHHHHHHHhhhhhhhh-----ccc--c
Q psy17363 407 LNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVSKQA-----GQT--A 479 (790)
Q Consensus 407 ~~~~~~~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g~~L~~L~~~f~k~L~~Ya~~iL~~~lp~~~-----~~~--~ 479 (790)
.... .| .-...-.|...+|......++||..|+.|--+.+|..+...++..|.+.+ ...+.... .+. +
T Consensus 382 ~~~~--~d--~v~~L~~s~~k~f~lae~Av~RC~~fT~G~~~~~Ll~Ald~~~~~y~~~~-~~~l~~lr~~~~~~~~~~~ 456 (766)
T PF10191_consen 382 SAEL--SD--AVRRLEESIPKLFGLAEEAVDRCIAFTGGYGVPGLLKALDSIFSQYLSSL-TATLRSLRKSCGLDSTATS 456 (766)
T ss_pred CCcH--HH--HHHHHHHhHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHcCCCccccc
Confidence 0000 01 11233447889999999999999999999888888888888888887752 33332110 000 0
Q ss_pred c-------------cchhccccccc-----c---ccccccccccC---------Ccc------cccceeEeecchhHHH-
Q psy17363 480 N-------------TTLASVSNITR-----D---LGLIKDQRTKY---------TPQ------EQAKICCVLTTAEYCL- 522 (790)
Q Consensus 480 ~-------------~~~s~~~~~~~-----~---~~~~ke~~~~~---------~~~------~~~~ic~ilnTAdYc~- 522 (790)
. .++.+.|.... + ..-+.+...++ ... .-.-.-...+-+.||.
T Consensus 457 ~~~~eDWs~fQ~aL~LL~~~g~l~~rl~~fE~~l~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 536 (766)
T PF10191_consen 457 SASSEDWSLFQNALQLLQTCGELLSRLSQFEQSLRSRLLELASKLLSSSFSSSSDTGEAASGDTRSSSPNPWKGYNYLAA 536 (766)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCccccccccccccCcccccchHHHHhhcc
Confidence 0 00122221100 0 00000001111 000 0000000111122221
Q ss_pred HhHHHHHHHHhhhcC---CcccccccCCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhh-ccccc--cccccC----
Q psy17363 523 ETTQQLEQKLKEKVD---PNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVK-TNWSS--VESVGD---- 592 (790)
Q Consensus 523 ~t~~qLe~kl~e~i~---~~~~~~i~~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k-~~W~~--~e~vgd---- 592 (790)
....++..+...... ........|......+..+...|..+....+...+...|..+.+ ..|.. ....++
T Consensus 537 ~~~~e~~~~~~~l~~~~~~~~~~~~ll~~~~~~~~~l~~~~~~~v~d~l~~~i~~~L~~vp~~~~W~~~~~~~~~~~~LP 616 (766)
T PF10191_consen 537 SRLAELPNKAEDLQSLSEQASPSFSLLPEARAAVSRLNQQAQDLVFDVLFSPIRQQLKSVPSLPSWSSAGVGETSTLDLP 616 (766)
T ss_pred ccHHHHHHHHHHHHHhhhccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCcccccCCccccccCCCC
Confidence 111122222222111 11112335777777777877777777777778888888988877 57987 322221
Q ss_pred -----ccccchhhhhhhhccc----cceecc----------------------cccchhHHHHHHHhhhhchhHHHHhhh
Q psy17363 593 -----QSGYVTAITSHLKQSV----PLIRTN----------------------LSSSRKYFTQFCVKFANSFIPKLVQHV 641 (790)
Q Consensus 593 -----~S~Yv~~i~~~l~~~~----~~i~~~----------------------L~~~~~yf~~fc~k~~~~~i~~f~~~l 641 (790)
..+||+.|..+|-.-- |+..+- ..+....-..+..+++......|++.|
T Consensus 617 ~FS~~P~eyIT~IGeyLLtLPq~LEp~~~~~~~al~~Al~~~~~~~~~~~~~~~~~~~~~~~~wl~~va~~~~~~~~~~i 696 (766)
T PF10191_consen 617 SFSLSPQEYITQIGEYLLTLPQQLEPFAESDNSALAFALHAGKLPYPPESDEEAEEADDFADEWLGKVARATCALYLEQI 696 (766)
T ss_pred ccccChHHHHHHHHHHHHhhHHhhhhhhcCcchHHHHHHHhcCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3468888876663111 111110 001113333578888999999999999
Q ss_pred hccccccccchhHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhhhCC
Q psy17363 642 FKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLP 721 (790)
Q Consensus 642 ~k~k~is~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~l~~ 721 (790)
++.+.+++.|+.||.-|+.=|.++|..|-. .+| . .+..+..+|.+|. +.|.....
T Consensus 697 ~~i~~l~~~~~~QL~~Di~Yl~nVl~aLg~-------~~~--------~---~L~~~~~ll~~~~-------~~~~~~~~ 751 (766)
T PF10191_consen 697 LEIPELSESGAKQLATDIDYLSNVLSALGL-------SPP--------P---NLQQLVTLLKAPP-------DQYAQVAK 751 (766)
T ss_pred hccccCCHHHHHHHHHHHHHHHHHHHHhCC-------CCC--------H---HHHHHHHHHcCCH-------HHHHHHHh
Confidence 999999999999999999999999998742 111 1 3455555666763 33555554
Q ss_pred CCchhHHHHHhhc
Q psy17363 722 ESDMTEFQRILDM 734 (790)
Q Consensus 722 d~s~~~f~kIL~l 734 (790)
.++..-...|-.|
T Consensus 752 ~~~~~~~~~v~~m 764 (766)
T PF10191_consen 752 GLPRRLVAAVAKM 764 (766)
T ss_pred cCCHHHHHHHHHH
Confidence 5555555555444
No 8
>KOG2346|consensus
Probab=99.49 E-value=5.8e-14 Score=152.73 Aligned_cols=193 Identities=21% Similarity=0.226 Sum_probs=171.9
Q ss_pred CCCCchhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhcccc---CCcc----hhhhhhhhHHHHHHHHHHh
Q psy17363 34 DHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSG---VGQD----GKKALEDSQKVIMQLFSQV 106 (790)
Q Consensus 34 s~dfd~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~---~~~~----~~~~l~~~~~~i~~L~~~i 106 (790)
+++|||+.|+.++.+ |++|++|-+-...|.++|++||++|+++|||+|| ++++ ++.++..+...|..|.+.|
T Consensus 30 gahFDpEvyldkL~R-EcpLaqLidsetdMV~qIRaLDSDmqtLVYENYNKFisATdTirkmk~~f~~me~eMd~L~~~m 108 (636)
T KOG2346|consen 30 GAHFDPEVYLDKLPR-ECPLAQLIDSETDMVQQIRALDSDMQTLVYENYNKFISATDTIRKMKSNFFGMEQEMDGLEEVM 108 (636)
T ss_pred CCCCCHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhchHHHHHHHhhcchhhhcchHHHHHHhhhhhhcchhhhHHHHH
Confidence 999999999999988 9999999999999999999999999999999998 4544 7888889999999999999
Q ss_pred hhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCC
Q psy17363 107 RDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDS 186 (790)
Q Consensus 107 ~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y 186 (790)
..|++++.....++.+-..+|++|. ++-..+++++.+.+.+..|+++.+.+.|++++..+..+...+ ++|
T Consensus 109 s~i~~~s~~l~g~L~ekre~I~kLg-------~~~~llrkvqfifdLP~rLrkc~~~~aYG~avR~~~~A~~~L---~qY 178 (636)
T KOG2346|consen 109 SSIQSKSDGLAGSLFEKRELIKKLG-------QRPPLLRKVQFIFDLPRRLRKCGRAPAYGAAVRGSSEATGKL---RQY 178 (636)
T ss_pred HHHhhhhccccchhHHhHHHHHHhc-------CCccchhhhHHHhhhHHHHHHhccccccchhhccccccccch---hhc
Confidence 9999999999999999999999999 899999999999999999999999999999999998888777 789
Q ss_pred CChhHHHHHHHHHHHHHhHhHHHHHHHHHhhhcCCCCCCCcChhHHHHHHhhhhccChh
Q psy17363 187 TDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPK 245 (790)
Q Consensus 187 ~~i~~i~~L~~~v~~l~~~l~~qI~~df~~~~~~~~~~~~~~~~~l~daC~vvd~l~~~ 245 (790)
.+.|.+.......+++...+..|+...+.. ++.+ .....+|..+++.+|..
T Consensus 179 ~~~psfq~~~~~seei~~rl~~qL~~rlr~----~~sg----a~~raEAv~LLl~lg~p 229 (636)
T KOG2346|consen 179 DGRPSFQEDDVPSEEIRLRLVAQLGTKLRS----DSSG----AQARAEAVVLLLQLGVP 229 (636)
T ss_pred CCCCcHHHhccchHHHHHHHHHHHHHHhcc----CCCC----chhHHHHHHHHHhcCCC
Confidence 999999999999999999999888776653 2211 23455566667777753
No 9
>KOG0412|consensus
Probab=98.87 E-value=1.6e-06 Score=99.50 Aligned_cols=623 Identities=14% Similarity=0.228 Sum_probs=330.8
Q ss_pred ccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcc-------hhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHh
Q psy17363 52 SLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQD-------GKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREIT 124 (790)
Q Consensus 52 SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~-------~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it 124 (790)
++++|+.+...+..+-+.+|++|...+.++-..... +...|.-...+.++|...|..+-..|+ .+.
T Consensus 32 ~i~qi~~~le~~~~ee~~~~~~L~~lL~q~~~ie~~~~~~l~r~~~~L~~v~~da~el~~~i~nt~~lAe-------~Vs 104 (773)
T KOG0412|consen 32 DISQIDLLLERIAREEARVDKDLEALLSQQQTIEGENMSALTRSAENLLTVEGDAKELTDAIKNTCVLAE-------TVS 104 (773)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHhhhhhhhhhccHHHHHHHHHHHHHHHH-------HHH
Confidence 789999999999999999999999999875432211 112222233333344444443333333 455
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHH------hhccCCCChhHHHHHHHH
Q psy17363 125 RDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVM------KHFQDSTDIPQILELRSQ 198 (790)
Q Consensus 125 ~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~------~~F~~y~~i~~i~~L~~~ 198 (790)
.+|++||.||.-+..++...+.+..|-.+.+-+...++..+|..++.+......+- .++++-....+|..-.+.
T Consensus 105 ~kVr~lDla~~Rv~~clq~v~dvrdlk~C~~gv~~Al~seDyE~AA~~IhRflslD~~~i~~~~~~~~~~ts~i~~~~~~ 184 (773)
T KOG0412|consen 105 GKVRALDLAQNRVNECLQRVDDVRDLKNCIEGVDTALESEDYEKAATHIHRFLSLDQALIESRFAKQVVPTSEISDPYET 184 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHhhhhhhccCCchhhhhHHHH
Confidence 89999999999999999999999999999999999999999999998877665553 233444556677777777
Q ss_pred HHHHHhHhHHHHHHHHHhhhcCCCCCCC----------cC-hhH----HHHHHhhhhccChhhhhhHHHHHHHhhcccee
Q psy17363 199 VAQIQNTLSEQITQDLKNAFQNPSSGSF----------VP-SKQ----IAEALRVVSILDPKVKKNILEWFISLQLSEYL 263 (790)
Q Consensus 199 v~~l~~~l~~qI~~df~~~~~~~~~~~~----------~~-~~~----l~daC~vvd~l~~~~k~~li~~~~~~~L~ey~ 263 (790)
+..++.+|..-+.+.|.++...+..+.. +. ... -..-|.++.. +.|..+ ....
T Consensus 185 L~~a~e~L~~l~~~~f~eA~r~~D~~ei~RffKmFPliG~~~eGL~~ys~ylc~iIA~---kar~~l---------~n~~ 252 (773)
T KOG0412|consen 185 LKEAKERLSKLFKERFTEAVRKQDLKEITRFFKMFPLIGEEDEGLQLYSVYLCQIIAS---KARKNL---------ANVK 252 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHccccCCchhhHHHHHHHHHHHHHH---HHHHHH---------HHHH
Confidence 8888888888888889888876543210 10 011 1224443332 222111 1100
Q ss_pred eeeccCcchhhHhhhhhHHHHHHhhhccccccccccCCCc-------ccccch-----------------hhHHHH----
Q psy17363 264 VLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPH-------WQLSEK-----------------ITLEFC---- 315 (790)
Q Consensus 264 ~~F~~~~ea~~Ld~i~rRy~Wf~r~L~~~e~~~~~iFP~~-------W~v~~~-----------------l~~~Fc---- 315 (790)
..= .++ .||=-+|-+.|..+=+.++.+.-.| |.-... +..+|-
T Consensus 253 ~~~-~~~--------~r~qv~fad~Lt~lfe~va~IIe~n~piie~~YG~~~li~~i~~LQ~ecD~q~s~il~~f~~~Rr 323 (773)
T KOG0412|consen 253 AGM-EDD--------NRRQVFFADTLTMLFEGVARIIEANQPILETYYGLKKLIDVIEKLQAECDLQGSLILDEFMDRRR 323 (773)
T ss_pred hcc-ccC--------chhHhHHHHHHHHHHHHHHHHHHcccHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 011 1111122222222222222211111 111110 111111
Q ss_pred -Hhhhhhhhhhhhc--------c--------ccchhH--HHHHHHHhccccHHHHHHhhccCcc-cc---ccccccccc-
Q psy17363 316 -ERTRSELGKIMSK--------R--------KFEIDV--KLLLYAIQKTSNFEQLLEKRFADDE-TE---GENKTKFDG- 371 (790)
Q Consensus 316 -~~Tr~~L~~iL~~--------~--------~~~idv--~lLl~alq~T~~FE~~l~krf~~~~-~~---~~~~~~f~g- 371 (790)
..+..++....-. . +.++|. ..+.-..+..-.|=++|.+|.+-.. .. ..+++.-++
T Consensus 324 i~~~~~~In~~~~~~~~~~~~~~~~ie~~p~p~Eid~ii~Ei~~mn~~~emY~rF~~~ki~~~~~v~~~s~~~~~~~d~e 403 (773)
T KOG0412|consen 324 ISHLNSDINESIHRQKNNINKNAEAIEDAPDPREIDAIITEITMMNQRSEMYSRFMSRKIGSNEVVESPSQDGDTSEDPE 403 (773)
T ss_pred HHHHHHHHhHHHHHhhcccccchhhhccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCCCCcccCHH
Confidence 1111111111100 0 011221 1122233444455566666654110 00 000000000
Q ss_pred --hhhhhccchhhhhhhhhccchHHHHHHHh------hhHHHHH-hchhhhhccCCCCCCcchhhHHHHhhhcccccccc
Q psy17363 372 --IIGSCFQNYLYIYIESLDRNLSDLIDRFA------EDSKQVL-NNINETCETSAAPVLPSCADLFMFYKKSLVQCTQL 442 (790)
Q Consensus 372 --~iS~~FepyL~~yv~~qdk~l~~~l~~~~------~~~~~~~-~~~~~~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~l 442 (790)
---.|.+-+++-=. .-..|.+++..|+ -...... -+..+.+ +.++.+-+=.-|+|...|||+.++...
T Consensus 404 ~~~~~~~~~~f~n~s~--~~~~mQel~~~y~~LE~yfm~esv~kAi~ld~ye-~~~~~~SSmVDDV~yivrk~irRA~~T 480 (773)
T KOG0412|consen 404 VRQELKCMKKFLNNSR--VLTKMQELIRNYLLLEEYFMLESVQKAIKLDEYE-DAGQLTSSMVDDVFYIVRKCIRRALST 480 (773)
T ss_pred HHHHHHHHHHHHhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-cCCcchhhhhhhHHHHHHHHHHHHHhc
Confidence 00112222221110 1111222222222 1111111 1223332 123444444569999999999999866
Q ss_pred ccCCchHHHHHHHHHHHHH-HHHHHHhhhhhhhhcccccc---c-hhccccccccccccccccccCCcccccceeEeecc
Q psy17363 443 STGEPMVALATTFQQYLRH-YAHKVLQQNVSKQAGQTANT---T-LASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTT 517 (790)
Q Consensus 443 s~g~~L~~L~~~f~k~L~~-Ya~~iL~~~lp~~~~~~~~~---~-~s~~~~~~~~~~~~ke~~~~~~~~~~~~ic~ilnT 517 (790)
++-.-+......-..+|+. |.. +|++.|-..-.+-+++ + .+-.+|-.- .+| +.....-.-..+|+
T Consensus 481 ~si~~~~a~iN~~~~~l~ndf~~-~L~~kLrs~~~~~~sa~N~i~s~lq~~k~~----~~d-----~d~~~~~fl~~LNn 550 (773)
T KOG0412|consen 481 SSIDSLCAFINEATALLDNDFLV-ALQSKLRSIQGGAASALNIIQSSLQAGKAE----DED-----ADLAKENFLTALNN 550 (773)
T ss_pred ccHHHHHHHHHHHHHHhcchHHH-HHHHHHHHhhhhhhhHHHHHHHHHHHHhcc----Ccc-----hhHHHHHHHHHHhh
Confidence 6544444444444445544 332 4555554110000000 0 001111110 001 11122222344786
Q ss_pred hhHHHHh----HHHHHHHHhhhcCCcc-----cccc-cCCccchhHHHHHHHHHHHHHHhhh-hcchhhhhHHhhccccc
Q psy17363 518 AEYCLET----TQQLEQKLKEKVDPNL-----ANKI-DLSNEQDVFHNVISSCIQLLVQDLE-LACEPALTAMVKTNWSS 586 (790)
Q Consensus 518 AdYc~~t----~~qLe~kl~e~i~~~~-----~~~i-~~~~~~d~f~~vis~~i~~Lv~~le-~~~~~al~~m~k~~W~~ 586 (790)
|+-|.+- ...||+...+...++. +..+ ++.+..+.|-++.+.+++.|.+.+. ..++|.+..|.+++...
T Consensus 551 ~~ls~eyi~~L~~~le~~~~~vf~~~~d~~~l~~~l~~l~~l~~~f~~L~k~g~~~Lf~~~lkpRi~~~id~f~~is~~l 630 (773)
T KOG0412|consen 551 ADLSKEYIHTLKKTLESDCTEVFPQNFDRAKLKSCLSNLEALSLKFKDLLKWGMEQLFSTVLKPRIRPWIDTFVNISYNL 630 (773)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHhhhhhhhhhhhccc
Confidence 6655444 4455555555554443 2222 6777889999999999999998886 68888888888877653
Q ss_pred c-ccccC---ccccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHHhhhhccccccccchhHHHHHHHHH
Q psy17363 587 V-ESVGD---QSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHML 662 (790)
Q Consensus 587 ~-e~vgd---~S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l~k~k~is~~gaeQLllD~~~L 662 (790)
- +.... +-+||......+.+.+-.....|. +..|- .+.- ++-..+...+..+..-..++..||=||=.|+.+|
T Consensus 631 s~edy~~~ea~d~~Vq~fl~~v~~l~~~~k~~lt-p~nY~-sLls-l~~~~ia~~LE~~i~k~~FNrlG~lqLDre~r~l 707 (773)
T KOG0412|consen 631 SEEDYAAYEANDPWVQQFLSSVEQLLAELKNSLT-PENYD-SLLS-LIVDEIATQLEQIIWKIQFNRLGGLQLDRELRAL 707 (773)
T ss_pred cHHHHhhhccCChHHHHHHHHHHHHHHhhhcccC-hhhHH-HHHH-HHHHHHHHHHHHHHHHhHHHhhcchHhhHHHHHH
Confidence 2 11221 347898888877777655555444 23332 3332 2334445555555555578999999999999999
Q ss_pred HHHhccCCCchhhhhhcCCccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhh-----hCCCCchhHHHHHhhcc
Q psy17363 663 KTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCK-----LLPESDMTEFQRILDMK 735 (790)
Q Consensus 663 k~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~-----l~~d~s~~~f~kIL~lK 735 (790)
-++|.... +| .+..+|.|+--|+-+|....+. +.-.|+. +.|--++++..++|+||
T Consensus 708 is~lt~~t------------~~--~lRdKf~RLtQIatLLnle~~s---e~le~w~~~~g~~twrLt~~EVr~vl~lr 768 (773)
T KOG0412|consen 708 ISYLTGVT------------QW--NLRDKFARLTQIATLLNLEKDS---EILEYWGPNSGPLTWRLTPAEVRKVLALR 768 (773)
T ss_pred HHHhhccc------------ch--hHHHHHHHHHHHHHHHcccccc---hHHHhcCCCCCCceEEeCHHHHHHHHHhh
Confidence 99988432 22 3688999999999999887543 3333542 22346889999999997
No 10
>PF07393 Sec10: Exocyst complex component Sec10; InterPro: IPR009976 This family contains the Sec10 component (approximately 650 residues long) of the eukaryotic exocyst complex, which specifically affects the synthesis and delivery of secretory and basolateral plasma membrane proteins [].; GO: 0006887 exocytosis, 0048278 vesicle docking, 0005737 cytoplasm
Probab=98.86 E-value=3.3e-07 Score=111.08 Aligned_cols=571 Identities=14% Similarity=0.221 Sum_probs=334.4
Q ss_pred hhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhh--hhhHHHHH-hhhc---cccccchhhHHHHHh
Q psy17363 108 DIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGV--HSLRTLIE-QRQY---GEIVMPLQGVIEVMK 181 (790)
Q Consensus 108 ~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v--~~L~~l~~-~r~Y---~e~~~ll~~~~~L~~ 181 (790)
.+..+.......+-.+-.....++.-+.+-..++.+++.++.+...- ..|+.+.. ..+. .++|..+.....+..
T Consensus 10 ~Ld~~i~~v~~~~~~iG~~Le~~~~~r~ra~~a~~Li~~y~ef~~~~~~~~l~~l~~~~~~~~~~~~~A~il~~L~~ls~ 89 (710)
T PF07393_consen 10 QLDERISEVSQKAVHIGDQLESADRQRSRAIEAIELIPYYNEFLSKGSYSNLEKLFRTFTDPEDPEEAAKILRNLLRLSK 89 (710)
T ss_pred HHHHHHhHHHHHHhchhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCccchHHHhhcccCccchHHHHHHHHHHHHHHH
Confidence 33344434445555555666677777888888888999999777753 57777732 2333 566666665555552
Q ss_pred hccCCCChhHHHHHHHHHHHHHhHhHHHHHHHHHhhhcCCCCCCCcChhHHHHHHhhhhccChhhhhhHHHHHHHhhccc
Q psy17363 182 HFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSE 261 (790)
Q Consensus 182 ~F~~y~~i~~i~~L~~~v~~l~~~l~~qI~~df~~~~~~~~~~~~~~~~~l~daC~vvd~l~~~~k~~li~~~~~~~L~e 261 (790)
...+.|........++...+.+...+...|+..+..++ ...+++...++-.++.+. .+|+.|+++.---
T Consensus 90 ---~~~~~~~~~~~~~~I~~~~e~fE~~LL~eFe~ay~~~d------~~~M~~~A~vL~~fngg~--~~i~~fi~k~~~f 158 (710)
T PF07393_consen 90 ---ELSDIPGFEEARENIEKYCEIFENALLREFEIAYREGD------YERMKEFAKVLLEFNGGS--SCIDFFINKHEFF 158 (710)
T ss_pred ---hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCc--HHHHHHHHhChhh
Confidence 33388999999999999999999999999999997654 366888776766666655 6788888753211
Q ss_pred e--ee-----ee----------ccCc-chhhHhhhhhHHHHHHhhhccccccccccCCCcccccchhhHHHH-Hhhhhhh
Q psy17363 262 Y--LV-----LF----------DESE-DSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFC-ERTRSEL 322 (790)
Q Consensus 262 y--~~-----~F----------~~~~-ea~~Ld~i~rRy~Wf~r~L~~~e~~~~~iFP~~W~v~~~l~~~Fc-~~Tr~~L 322 (790)
+ .. .| .++. .....+.++.=|..++..++.--.-...+||+.-.|-..++..++ ......+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~~~l~~~~~~i~~~i~~e~~iI~~VFp~~~~Vm~~fiervf~~~I~~~i 238 (710)
T PF07393_consen 159 IDEDQLDESNGFEDEEIWEKLSDPDSHPPINEESLDAFFEDIRDVINEESKIIDRVFPNPEPVMQKFIERVFEQVIQEYI 238 (710)
T ss_pred hhhhhhccccccchhHHHHhccCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 1 00 11 1111 111233455557777777777666788999998888777766655 4455556
Q ss_pred hhhhhccccchhHHHHHHHHh----ccccHHHHHHhhccCcccc--ccccccccchhhhhccchh--hhhhhhhccchHH
Q psy17363 323 GKIMSKRKFEIDVKLLLYAIQ----KTSNFEQLLEKRFADDETE--GENKTKFDGIIGSCFQNYL--YIYIESLDRNLSD 394 (790)
Q Consensus 323 ~~iL~~~~~~idv~lLl~alq----~T~~FE~~l~krf~~~~~~--~~~~~~f~g~iS~~FepyL--~~yv~~qdk~l~~ 394 (790)
..+|.+. .+.+....|.+++ .|..|=+.|..-+.+.... ..-...++..+-++|+||+ ..|++.|-+++.+
T Consensus 239 ~~lL~~a-~~~s~~~YLr~l~~~y~~t~~lv~~L~~~~~~~~~~~~~~~~~~l~~~~~~lF~~~l~~~~Yl~~E~~~l~~ 317 (710)
T PF07393_consen 239 ESLLEEA-SSISTLAYLRTLHGLYSQTKKLVDDLKEFFSGENPDPDSSDSAFLDQLVESLFEPYLEDDEYLEEEKRSLKE 317 (710)
T ss_pred HHHHHhh-ccCCHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCccchHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHH
Confidence 6777644 3345556665555 6777767776543321110 0122346778999999999 9999999999988
Q ss_pred HHHHHhhhHH---HH------------------------H---------h-----------c---h--------------
Q psy17363 395 LIDRFAEDSK---QV------------------------L---------N-----------N---I-------------- 410 (790)
Q Consensus 395 ~l~~~~~~~~---~~------------------------~---------~-----------~---~-------------- 410 (790)
.+...+..+. .+ . . + .
T Consensus 318 ~~~~~l~~f~~~~e~~~~~~~~~~~~k~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (710)
T PF07393_consen 318 LLESILSRFNELHEREISTKSLSNKLKNQFLTSFKNVLMSSSSSSSSKLSQISSFMSSKLDRSQQQASLENNLDLAAKAN 397 (710)
T ss_pred HHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhccccccccchhHHHhhhhhcccCcccccccccchhhhhcccc
Confidence 7755554322 00 0 0 0 0
Q ss_pred ---hhhhccCCCCCCcchhhHHHHhhhccccccccccC-CchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhcc
Q psy17363 411 ---NETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTG-EPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASV 486 (790)
Q Consensus 411 ---~~~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g-~~L~~L~~~f~k~L~~Ya~~iL~~~lp~~~~~~~~~~~s~~ 486 (790)
...++.++..-+.-+..|....+..+.||..|+.+ ++-.....+|.-.|......=+.+.+.....+ ++..
T Consensus 398 ~~~~~~~~~~~~ls~~~a~~il~~~~es~~R~~~l~~~~~~~~~~~~if~~Ll~~l~~~~i~~~lea~~~~-----~~~~ 472 (710)
T PF07393_consen 398 IMSSNLEGIDSLLSLEVAENILQWNKESLGRCLELSPPSDLPKNCQEIFEILLQSLGEEHIEPALEAAYYK-----LSSQ 472 (710)
T ss_pred ccccccccccccCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----hhcc
Confidence 00000011122235677888899999999999854 33333445555555554333234444410000 0000
Q ss_pred ccccccccccccccccCCcccccceeEeecchhHHHHhHHH-HHHHHhhhcC--CcccccccCCccchhH--------HH
Q psy17363 487 SNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQQ-LEQKLKEKVD--PNLANKIDLSNEQDVF--------HN 555 (790)
Q Consensus 487 ~~~~~~~~~~ke~~~~~~~~~~~~ic~ilnTAdYc~~t~~q-Le~kl~e~i~--~~~~~~i~~~~~~d~f--------~~ 555 (790)
. . ...-+...+. -.-+||.|+-+..+++. .++.+...+. +.+.. .+...+..| ..
T Consensus 473 ~---~--------~~~~~~~~l~-fl~~i~~~~~i~~l~~~~~~~~l~pl~~~~~~~~~--~~~~~k~~~~~~le~~v~~ 538 (710)
T PF07393_consen 473 D---I--------AESKEVPPLV-FLELINQADTILQLLQIFYKEELLPLIQSSPDFLN--ECIQKKKSFESRLEEKVNA 538 (710)
T ss_pred c---c--------cccCCCCCcc-HHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHH--HHHHHHHHHHHHHHHHHHH
Confidence 0 0 0000001222 23457888777666663 3344444332 11111 111222222 22
Q ss_pred HHHHHHHHHHHhhhhcchhhhhHHhhcccccccc-c---cCccccchhhhhhhhccccceecccccchhHHHHHHHhhhh
Q psy17363 556 VISSCIQLLVQDLELACEPALTAMVKTNWSSVES-V---GDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFAN 631 (790)
Q Consensus 556 vis~~i~~Lv~~le~~~~~al~~m~k~~W~~~e~-v---gd~S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~ 631 (790)
.+..||..++..++. .|..-.+.+...-+. . ...++....++..|......++..|. ..-...|.-.+..
T Consensus 539 gL~~~i~~l~~~v~~----iL~~Qkk~Df~p~~~~~~~~~~~T~ac~~vv~~L~~~~~~~~~~l~--~~nl~~f~~elg~ 612 (710)
T PF07393_consen 539 GLNKGIDVLMNWVEF----ILSEQKKTDFKPKEDDLSLDQQPTPACQEVVEFLERHCSLLKGSLD--GSNLDVFLQELGE 612 (710)
T ss_pred HHHHHHHHHHHHHHH----HHhhcCCCCCCCCccccccccCCCHHHHHHHHHHHHHHHHHHHHcc--chhHHHHHHHHHH
Confidence 334444444444443 555333445443111 1 13566666677777777666666665 3445556666666
Q ss_pred chhHHHHhhhhccccccccchhHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeeccchhHHHHHHHHHhhcCCCch
Q psy17363 632 SFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDIC 711 (790)
Q Consensus 632 ~~i~~f~~~l~k~k~is~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~ 711 (790)
.|...++.++ |--+++..||=+|..|+.....++.++- .+.|...|..+-.+-.++.++ |+.
T Consensus 613 ~l~~~l~~h~-kk~~vs~~Gg~~l~~Dl~~Y~~~~~~~~--------------~~~v~~~F~~L~~l~nl~~v~---~~~ 674 (710)
T PF07393_consen 613 RLHRLLLKHL-KKFTVSSTGGLQLIKDLNEYQDFIRSWG--------------IPSVDEKFEALKELGNLFIVD---PEN 674 (710)
T ss_pred HHHHHHHHHH-HhCccCchhHHHHHHHHHHHHHHHHHcC--------------CchHHHHHHHHHHHHhheeec---HHH
Confidence 6666666666 4456799999999999999999998762 234788899999999999985 344
Q ss_pred hHHHhhhhC--CCCchhHHHHHhhc
Q psy17363 712 FVEQFCKLL--PESDMTEFQRILDM 734 (790)
Q Consensus 712 fv~~y~~l~--~d~s~~~f~kIL~l 734 (790)
..+ +..-. +.-+..++...+.+
T Consensus 675 l~~-~~~~~~~~~~~~~~i~~fi~~ 698 (710)
T PF07393_consen 675 LKE-LCREGQLGRFSPEEIYEFIQR 698 (710)
T ss_pred HHH-HHhhccccCCCHHHHHHHHHH
Confidence 555 33332 33456666665555
No 11
>KOG2218|consensus
Probab=98.83 E-value=1.9e-06 Score=99.92 Aligned_cols=448 Identities=13% Similarity=0.180 Sum_probs=263.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhhcCCCCCCC------cC----hhHHHH--HHhhhhcc------Chh------hhhh-
Q psy17363 195 LRSQVAQIQNTLSEQITQDLKNAFQNPSSGSF------VP----SKQIAE--ALRVVSIL------DPK------VKKN- 249 (790)
Q Consensus 195 L~~~v~~l~~~l~~qI~~df~~~~~~~~~~~~------~~----~~~l~d--aC~vvd~l------~~~------~k~~- 249 (790)
+-+++.++...|+.++..||+.++..-+||.. .+ ...+.. -|.-.=.+ |++ .+..
T Consensus 182 ~~~r~~k~~~~l~~~~~~~feaiLssl~Wp~a~~~s~~~~l~s~l~~~~k~~f~~sfl~l~~~~~~~~~r~~l~~~~es~ 261 (737)
T KOG2218|consen 182 FDRRTVKWHKLLRKQKSSDFEAILSSLRWPLATLMSESVGLKSPLREMLKSLFCQSFLFLSEETLQGESRRPLQYFKESV 261 (737)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcchhhhccCccchhHHHHHHHHHHHHHhhhhhcccchhhchhhhcCCCC
Confidence 34555666668899999999999988777510 01 111111 23222112 111 1111
Q ss_pred -----HHHHHHHhhccceeeeeccCcchhhHhhhhhHHHHHHhhhccccccccccCC--------CcccccchhhHHHHH
Q psy17363 250 -----ILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFP--------PHWQLSEKITLEFCE 316 (790)
Q Consensus 250 -----li~~~~~~~L~ey~~~F~~~~ea~~Ld~i~rRy~Wf~r~L~~~e~~~~~iFP--------~~W~v~~~l~~~Fc~ 316 (790)
.++.+++..-..++.+|.++..++|+++.+=-|+++.+.++++.+.+..+|- .+.+....+...-|.
T Consensus 262 ~~~lw~~q~L~~P~~~rF~YHF~~~rqTn~lsKPEwff~~vlk~~ren~~~~d~~~qp~~D~agl~~~~~r~efi~~lvq 341 (737)
T KOG2218|consen 262 EPVLWATQVLLTPYAKRFRYHFMSDRQTNRLSKPEWFFEFVLKVLRENRESFDELFQPLVDKAGLLSVNARLEFINGLVQ 341 (737)
T ss_pred CchhHHHHHHHHHHHhhhheeeccccccccccCcHHHHHHHHHHHHHHHHHHHHHhhhHHHhhcCCCCCHHHHHHHHHHH
Confidence 2555555555677899999999999999997788888888888777766666 334444455555555
Q ss_pred hhhhhhhhhhhccccchhHHHHHHHHhccccHHHHHHhhccCccccccccccccchhhhhc-cchhhhhhhhhccchHHH
Q psy17363 317 RTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCF-QNYLYIYIESLDRNLSDL 395 (790)
Q Consensus 317 ~Tr~~L~~iL~~~~~~idv~lLl~alq~T~~FE~~l~krf~~~~~~~~~~~~f~g~iS~~F-epyL~~yv~~qdk~l~~~ 395 (790)
.-++.+...+..-. -+-.++++.+..++.|++.|..-|++ |..|-+.||-.+ ..|+..|...+-+. .
T Consensus 342 l~kekl~~~I~q~d--~k~~l~~HLvdq~l~Fdkrl~s~f~Y-------~~t~~s~i~~l~~~~~~~~W~~iEle~---a 409 (737)
T KOG2218|consen 342 LAKEKLAVDISQLD--QKRNLFLHLVDQVLAFDKRLQSSFGY-------PGTFLSLISLLSQPMWLKKWLKIELEE---A 409 (737)
T ss_pred HHHHHhhhhhhhHH--hhhhhhHHHHHHHHHHHHHHHHHcCC-------CcchhhhhhHhcChHHHHHHHHHHHHH---H
Confidence 55555544443221 13347899999999999999998874 224566777777 77889997666554 3
Q ss_pred HHHHhhhHHHHHhchhhhhc--cCCCCCCcchhhHHHHhhhccccccccccCCchHHHHHHHHHHHHHHHHH------HH
Q psy17363 396 IDRFAEDSKQVLNNINETCE--TSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHK------VL 467 (790)
Q Consensus 396 l~~~~~~~~~~~~~~~~~d~--~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g~~L~~L~~~f~k~L~~Ya~~------iL 467 (790)
+.++..+.+.+....++... .+..+-.|-|+|-|+-.-.. ...-..+-|- ...+..+|+.|+.. ||
T Consensus 410 ~~k~k~~~~n~~aW~~~s~~~S~~~~~kiP~~a~~F~~ll~~---i~dr~k~lp~---~~~~~qFl~s~~~~l~~~~r~l 483 (737)
T KOG2218|consen 410 LRKFKMIIKNEVAWVDGSKDLSDENDLKIPDCAERFRDLLSA---IIDRYKNLPA---LDYQLQFLRSQLDILRQEFRIL 483 (737)
T ss_pred HHHHHHhhhhhhhcchhhhhhhhhhhhccchhHHHHHHHHHH---HHHHhccccc---hHHHHHHHHHHHHHHHHHHHHH
Confidence 34444332222221111110 02344456777777543222 2222222222 23445555665553 22
Q ss_pred hhhhhhhhccccccchhccccccccccccccccccCCcccccceeEeecchhHHHHhHH---------HHHHHHhh-hcC
Q psy17363 468 QQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQ---------QLEQKLKE-KVD 537 (790)
Q Consensus 468 ~~~lp~~~~~~~~~~~s~~~~~~~~~~~~ke~~~~~~~~~~~~ic~ilnTAdYc~~t~~---------qLe~kl~e-~i~ 537 (790)
.-+..+... . ++ ++ ...|.++|.--|....+. ++.+-+.+ .+.
T Consensus 484 l~~~~~~e~------------~---~s--------~~----~~li~~~n~VNyvervl~ews~nv~fl~l~~a~~d~~v~ 536 (737)
T KOG2218|consen 484 LTRYKEFEL------------S---KS--------LH----GFLIAILNSVNYVERVLKEWSSNVVFLDLADAVEDEDVY 536 (737)
T ss_pred HHHHHhhcc------------c---cc--------cc----hhHHHhhhhHHHHHHHHHHHhcchhHHHHHHHhhccccc
Confidence 222222111 0 00 00 122444454447766555 33333333 111
Q ss_pred --Cccccccc--CCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhhcccccccc---ccC--ccccchhhhhhhhccc
Q psy17363 538 --PNLANKID--LSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVES---VGD--QSGYVTAITSHLKQSV 608 (790)
Q Consensus 538 --~~~~~~i~--~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k~~W~~~e~---vgd--~S~Yv~~i~~~l~~~~ 608 (790)
+.. ...+ |.++.+.+..+.+.-+..++..+...+++..+.+.+.+|-+.+. .|. .|+-+......|+..+
T Consensus 537 ~l~e~-~~~ns~F~~~~~~leel~~~~~~~~iv~~l~~~~~~~r~y~k~~w~s~~~~~~~~~~svS~~iv~~ld~Lr~~l 615 (737)
T KOG2218|consen 537 MLHEA-TSGNSVFEEVSNFLEELMSTWMLKLIVHLLQNLKDLLRNYKKNKWVSLEESENIGPLSVSREIVNLLDGLRRHL 615 (737)
T ss_pred ccccc-cccchhHHHHHHHHHHHhhHHHHHHHHHHHHhhHHHHHhhhhcchhcccchhhcccchHHHHHHHHHHHHHHHH
Confidence 111 1112 66666666666666777777777778889999999999988764 222 2556666677777777
Q ss_pred cceecccccchhHHHHHHHhhhhchhHHHHhhh-hccccccccchhHHHHHHHHHHHHhccCCCchhhhhhcCCccceee
Q psy17363 609 PLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHV-FKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKV 687 (790)
Q Consensus 609 ~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l-~k~k~is~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~ 687 (790)
..++.++. +.-|+.+...++..+...++.-+ ++...++.-|++|+..|+..|...|..+-. .|
T Consensus 616 ~~l~~~l~--~~~fs~~~~~l~~~idv~~~~e~il~~~~f~~~~~~~f~~Da~~L~~~fs~yc~--------rp------ 679 (737)
T KOG2218|consen 616 DDLEENLN--PLDFSAIWRNLQENIDVYVFEEIILKNHKFESSGLFQFVHDAKRLLEVFSEYCV--------RP------ 679 (737)
T ss_pred HHHHHhhC--hhhHHHHHHHHHhhhhHHHHHHHHHhhhhcCchHHHHHHHHHHHHHHHhccccc--------ch------
Confidence 77777776 67787777677777666665555 566888999999999999999999987521 22
Q ss_pred eeccchhHHHHHHHHHhh
Q psy17363 688 VVKGMTKAEMILKLVMAS 705 (790)
Q Consensus 688 V~~~~~k~E~iLKll~~p 705 (790)
...|.++-.+++|+..-
T Consensus 680 -~~~f~~l~e~~~vL~l~ 696 (737)
T KOG2218|consen 680 -LLKFKSLRELVCVLKLE 696 (737)
T ss_pred -hHHHHHHHhhhhhhhhc
Confidence 33455666667766553
No 12
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=98.69 E-value=3.6e-08 Score=107.46 Aligned_cols=255 Identities=14% Similarity=0.225 Sum_probs=151.3
Q ss_pred CCCCc---chhhHHHHhhhccccccccccCCchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhccccccccccc
Q psy17363 419 APVLP---SCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGL 495 (790)
Q Consensus 419 ~~vl~---Ss~dLF~~yk~~l~~~~~ls~g~~L~~L~~~f~k~L~~Ya~~iL~~~lp~~~~~~~~~~~s~~~~~~~~~~~ 495 (790)
+.++| ..-....-+|+.+.+|..++.+-.. ....+.. .+++|.+++|...+-..-.. . +
T Consensus 25 P~~lPFS~~vp~~c~~ir~fi~~~~~F~~~~~~-~~~eid~-~v~ks~d~lL~~~l~~~L~~-------~-----i---- 86 (311)
T PF04091_consen 25 PKKLPFSQMVPMCCRQIRSFIEKCYKFSDDLYQ-SSTEIDD-IVRKSLDRLLTRVLNGSLKS-------K-----I---- 86 (311)
T ss_dssp ---SSSBTHHHHHHHHHHHHHHHHHHHHHHTT---HHHHHH-HHHHHHHHHHHHHHHHHHHH-------H-----H----
T ss_pred CeeCCCchHHHHHHHHHHHHHHHHHHHHHhccc-chHHHHH-HHHHHHHHHHHHHHHHHHHH-------H-----H----
Confidence 55565 4456666777778888877776433 2333333 66666666655444321000 0 0
Q ss_pred cccccccCCcccccceeEeecchhHHHHhHHHHHHHHhhhcC-Ccccc-cccCCccchhHHHHHHHHHHHHHHhhhhcch
Q psy17363 496 IKDQRTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVD-PNLAN-KIDLSNEQDVFHNVISSCIQLLVQDLELACE 573 (790)
Q Consensus 496 ~ke~~~~~~~~~~~~ic~ilnTAdYc~~t~~qLe~kl~e~i~-~~~~~-~i~~~~~~d~f~~vis~~i~~Lv~~le~~~~ 573 (790)
+. . + .+..++=|+...+|++.....||+-+..... +...+ .+.+ ...+.|.+..+.|-+.+...+..+++
T Consensus 87 -~~--~-~---~l~qi~Qi~iNl~~le~Ac~~le~~l~~~~~~~~~~~~~~~l-~a~~~f~~~r~~Ae~~I~~lv~~KID 158 (311)
T PF04091_consen 87 -RS--S-L---NLSQIVQIVINLEYLEKACKELEEFLSSLRGIPQSAGGHIRL-KATKMFKDARKAAEKRIFELVNSKID 158 (311)
T ss_dssp -T---T-S----HHHHHHHHHHHHHHHTTHHHHHHHHHHHHT-----------------S---TTHHHHHHHHHHHHHHH
T ss_pred -hc--C-C---CHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCCCccchHhHhh-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 0 2233455677889999999999998887663 22111 2333 34589999999999999999999999
Q ss_pred hhhhHHhhccccccccccCccccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHHhhh--hccccccccc
Q psy17363 574 PALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHV--FKCKPLSTVG 651 (790)
Q Consensus 574 ~al~~m~k~~W~~~e~vgd~S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l--~k~k~is~~g 651 (790)
.-+ ++...+|..-+..|+.|.||.+++..|+..+.-.-..|. +.+.+..|-.....+..+|++.| -.+|+++..|
T Consensus 159 e~l-ela~yDW~~~~~~~~ps~yi~dli~fL~~~f~s~l~~LP--~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~a 235 (311)
T PF04091_consen 159 EFL-ELAEYDWTPTEPPGEPSDYINDLIQFLETTFSSTLTNLP--PSVKQLVYFSACDHISESLLDLLLSDDVKRINMNA 235 (311)
T ss_dssp HHH-TT--TT--------S--HHHHHHHHHHHHHHHTTTTTSH---HHHHHHHHHHHHHHHHHHHHHHT---------TT
T ss_pred HHH-hhcccceecCCCCCCCCHHHHHHHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHH
Confidence 999 899999999998999999999999999998855445555 67778899999999999999999 5779999999
Q ss_pred hhHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeeccchhHHHHHHHHHhhcCCCchhH
Q psy17363 652 AEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFV 713 (790)
Q Consensus 652 aeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv 713 (790)
.+|+.+|+..+..+..++|..+.+ .......|..+.-++-++++. .++.|.
T Consensus 236 l~~~~~Dv~~lE~f~~~~~~~~~~---------~~~L~~~F~eLrQlvdLl~s~--~~~~y~ 286 (311)
T PF04091_consen 236 LQNFDLDVKYLESFADSLPVPGNN---------IPSLRETFAELRQLVDLLLSD--DWEEYL 286 (311)
T ss_dssp HHHHHHHHHHHHHHHTT-SSSS-----------SSTTGGGGHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHHHHHhCcCcccc---------cccHHHHHHHHHHHHHHHhcC--CHHHHh
Confidence 999999999999999999876543 223567788899999999987 445563
No 13
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=98.63 E-value=5.1e-07 Score=97.81 Aligned_cols=217 Identities=16% Similarity=0.275 Sum_probs=178.0
Q ss_pred CCCCchhhhhhcccCcc-cccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhh
Q psy17363 34 DHDFDSVQYINSLFPTE-QSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSK 112 (790)
Q Consensus 34 s~dfd~~~~In~lfp~e-~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~ 112 (790)
.++|||+.|.=+.+|.. .++..++....++..+...++..|...|.+++++=-.+...+.+.+..+..-...+...|..
T Consensus 10 ~~~FD~~~~~L~~l~~~~~~~~~i~~~~ekLs~~ldvVe~~L~~~I~~~s~~f~~a~~~v~el~~~l~~a~~~~~~~R~~ 89 (291)
T PF10475_consen 10 DEDFDPVRYELEKLPEDELDLEDIEELQEKLSHYLDVVEKKLSREISEKSDSFFQAMSSVQELQDELEEALVICKNLRRN 89 (291)
T ss_pred CCCCCchHHHHHhCCCccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45999999987777766 56778889999999999999999999999988876677788888899999888888889988
Q ss_pred hhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCCCChhHH
Q psy17363 113 AEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQI 192 (790)
Q Consensus 113 a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y~~i~~i 192 (790)
-..+...+..-.-.|-++..-|+|+......|+.++.+..+-..++.++.+++|..|..++....++++ .|+.+..+
T Consensus 90 L~~~~~~~~~~~L~Il~~~rkr~~l~~ll~~L~~i~~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~---~l~~~~c~ 166 (291)
T PF10475_consen 90 LKSADENLTKSGLEILRLQRKRQNLKKLLEKLEQIKTVQQTQSRLQELLEEGDYPGALDLIEECQQLLE---ELKGYSCV 166 (291)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hcccchHH
Confidence 888888877777788899999999999999999999999999999999999999999999999999994 57777888
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHhhhcCCCCCCCcChhHHHHHHhhhhccChhhhhhHHHHHHHh
Q psy17363 193 LELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISL 257 (790)
Q Consensus 193 ~~L~~~v~~l~~~l~~qI~~df~~~~~~~~~~~~~~~~~l~daC~vvd~l~~~~k~~li~~~~~~ 257 (790)
+.|..++..+...+..++-.+|..+-..=. +..-..+-+|...++- .....+++...|++.
T Consensus 167 ~~L~~~L~e~~~~i~~~ld~~l~~~~~~Fd---~~~Y~~v~~AY~lLgk-~~~~~dkl~~~f~~~ 227 (291)
T PF10475_consen 167 RHLSSQLQETLELIEEQLDSDLSKVCQDFD---PDKYSKVQEAYQLLGK-TQSAMDKLQMHFTSA 227 (291)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHhh-hHHHHHHHHHHHHHH
Confidence 889999999999999999988888643211 1112457777766552 234555555554443
No 14
>PF06248 Zw10: Centromere/kinetochore Zw10; InterPro: IPR009361 Zeste white 10 (ZW10) was initially identified as a mitotic checkpoint protein involved in chromosome segregation, and then implicated in targeting cytoplasmic dynein and dynactin to mitotic kinetochores, but it is also important in non-dividing cells. These include cytoplasmic dynein targeting to Golgi and other membranes, and SNARE-mediated ER-Golgi trafficking [, ]. Dominant-negative ZW10, anti-ZW10 antibody, and ZW10 RNA interference (RNAi) cause Golgi dispersal. ZW10 RNAi also disperse endosomes and lysosomes []. Drosophila kinetochore components Rough deal (Rod) and Zw10 are required for the proper functioning of the metaphase checkpoint in flies []. The eukaryotic spindle assembly checkpoint (SAC) monitors microtubule attachment to kinetochores and prevents anaphase onset until all kinetochores are aligned on the metaphase plate. It is an essential surveillance mechanism that ensures high fidelity chromosome segregation during mitosis. In higher eukaryotes, cytoplasmic dynein is involved in silencing the SAC by removing the checkpoint proteins Mad2 and the Rod-Zw10-Zwilch complex (RZZ) from aligned kinetochores [, , ].; GO: 0007067 mitosis, 0000775 chromosome, centromeric region, 0005634 nucleus
Probab=98.43 E-value=7.5e-05 Score=88.93 Aligned_cols=471 Identities=13% Similarity=0.184 Sum_probs=278.6
Q ss_pred cCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhh--hhhhHHHHHHHhhhhhhh
Q psy17363 53 LSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSK--AEKSEEMVREITRDIKLL 130 (790)
Q Consensus 53 L~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~--a~~sE~~V~~it~dIk~L 130 (790)
-.++...+.++.+++..+..++...+.+++..=......-.........|..+|+++.+. .......+.+...+...|
T Consensus 9 ~edl~~~I~~L~~~i~~~k~eV~~~I~~~y~df~~~~~~~~~L~~~~~~l~~eI~d~l~~~~~~~i~~~l~~a~~e~~~L 88 (593)
T PF06248_consen 9 KEDLRKSISRLSRRIEELKEEVHSMINKKYSDFSPSLQSAKDLIERSKSLAREINDLLQSEIENEIQPQLRDAAEELQEL 88 (593)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence 357788899999999999999999998887521112222334455566666666544433 234444455555555566
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhc--cCCCChhHHHHHHHHHHHHHhHhHH
Q psy17363 131 DTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHF--QDSTDIPQILELRSQVAQIQNTLSE 208 (790)
Q Consensus 131 D~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F--~~y~~i~~i~~L~~~v~~l~~~l~~ 208 (790)
-.--+..+..+.+|++|+-+-..+++.+..+..++|-.++..|..+..++... ..+.+..-+..|..++..+++.+..
T Consensus 89 ~~eL~~~~~~l~~L~~L~~i~~~l~~~~~al~~~~~~~Aa~~L~~~~~~L~~l~~~~~~~~~i~~~Lk~e~~~lr~~L~~ 168 (593)
T PF06248_consen 89 KRELEENEQLLEVLEQLQEIDELLEEVEEALKEGNYLDAADLLEELKSLLDDLKSSKFEELKILKLLKDEYSELRENLQY 168 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCcCcccccHHHHHHHHHHHHHHHHHHH
Confidence 55555666888999999999999999999999999999999999999999765 4456678888899999999999999
Q ss_pred HHHHHHHhhhcC--CCC------C----------CCcChhHHHH---HHhhhhccChh---hhhhHHHHHHHhhcc-cee
Q psy17363 209 QITQDLKNAFQN--PSS------G----------SFVPSKQIAE---ALRVVSILDPK---VKKNILEWFISLQLS-EYL 263 (790)
Q Consensus 209 qI~~df~~~~~~--~~~------~----------~~~~~~~l~d---aC~vvd~l~~~---~k~~li~~~~~~~L~-ey~ 263 (790)
++.+.|+..+.= .+. . ..+....|.+ |..+++.|+.. +.+.+++.++...+. ...
T Consensus 169 ~L~~~w~~lv~~~~~~~k~~~~~~~~~~v~l~vs~~~~~~~L~~vl~AL~~lg~L~~~l~~~~~~Ll~~ii~PlI~~p~~ 248 (593)
T PF06248_consen 169 QLSEEWERLVQWDSPSSKQLSSPESTLKVTLHVSKSESQESLQDVLQALEILGILDYKLKKFSKFLLEHIIKPLISHPSS 248 (593)
T ss_pred HHHHHHHhheeecCCCcccccccccceEEEEEeecCcccchHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 999999997641 111 0 0001112444 66666666654 446778777777664 111
Q ss_pred ---------------eeeccCcchhhHhhhhhHHHHHHhhhccccccccccCCCcccccchhhHHHHHhhhhhhhhh---
Q psy17363 264 ---------------VLFDESEDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKI--- 325 (790)
Q Consensus 264 ---------------~~F~~~~ea~~Ld~i~rRy~Wf~r~L~~~e~~~~~iFP~~W~v~~~l~~~Fc~~Tr~~L~~i--- 325 (790)
-.|....+...--+.+.-|.=+...+......+. .-|..|. .+...|-..+...|...
T Consensus 249 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~V~~~l~~vf~fL~~~L~-~~~~~~~---~l~~~~g~~i~~~ls~~lI~ 324 (593)
T PF06248_consen 249 IVSVEESEDGSVEITLSYEPDSSKDKRPSPKEVFSNLLLVFEFLHQHLL-SLPSSDS---SLSESFGDHIWPRLSELLIS 324 (593)
T ss_pred cccccccCCCcceEEEEeecccccccCCCHHHHHHHHHHHHHHHHHHhc-ccCCchh---HHHHHHHHHHHHHHHHHHHH
Confidence 1121111111111223334444444444444333 2355666 55566666555555433
Q ss_pred --hhcc-ccch-hHHHHHHHHhccccHHHHHHhhccCccccccccccccchhhhhccchhhhhhhhhccchHHHHHHHhh
Q psy17363 326 --MSKR-KFEI-DVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAE 401 (790)
Q Consensus 326 --L~~~-~~~i-dv~lLl~alq~T~~FE~~l~krf~~~~~~~~~~~~f~g~iS~~FepyL~~yv~~qdk~l~~~l~~~~~ 401 (790)
|... +.+. +-.-+...+..|.+||+.|.. .+....+ .+.+++=-+.+=..|.+......-+.-...+.
T Consensus 325 ~~L~~aiP~~~~~l~~f~~v~~~~~~Fe~~L~~-lgf~~~~-------~~~L~~~~~~i~~~f~~kr~~~iL~~AR~lm~ 396 (593)
T PF06248_consen 325 NCLSPAIPTSASELQEFEEVLESVEEFEEALKE-LGFLSSD-------NTELSEFVDNIETHFANKRCQDILDKARDLML 396 (593)
T ss_pred hhCcCcCCCCHHHHHHHHHHHHHHHHHHHHHHH-cCCcCCC-------chHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh
Confidence 2211 1111 223577889999999999976 4322110 01222222233333333332221111111110
Q ss_pred ----hHHHHHhc------------------------hhhhhc--cCCCCCCc------chhhHHHHhhhccccccccccC
Q psy17363 402 ----DSKQVLNN------------------------INETCE--TSAAPVLP------SCADLFMFYKKSLVQCTQLSTG 445 (790)
Q Consensus 402 ----~~~~~~~~------------------------~~~~d~--~~~~~vl~------Ss~dLF~~yk~~l~~~~~ls~g 445 (790)
+...-++. ..+.+. .....-+| |+.+|....++.|..+... ..
T Consensus 397 ~~~~~~v~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~c~IS~s~~~l~~L~~~~L~ea~~~-~~ 475 (593)
T PF06248_consen 397 RDLHDTVKVGPDSKAELPKLPSPGSSNKAKAKEESMSNENEDSLSPSLFQFPRCRISKSAQELVELAHQTLKEACKS-SE 475 (593)
T ss_pred cccccceEecccccccCCCCCCCcccchhhcccchhcccCccccccccccCCcceechhHHHHHHHHHHHHHHHhcC-Ch
Confidence 00000000 000000 01222333 7889999999999999444 34
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhccccccccccccccccccCCcccccceeEeecchhHHHHhH
Q psy17363 446 EPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETT 525 (790)
Q Consensus 446 ~~L~~L~~~f~k~L~~Ya~~iL~~~lp~~~~~~~~~~~s~~~~~~~~~~~~ke~~~~~~~~~~~~ic~ilnTAdYc~~t~ 525 (790)
..-..|+..-+..+.-|..- .|..-. . .+ .+ ..+ ..++.-|-|-|.+.-+
T Consensus 476 ~~a~~l~~~~r~i~~ly~~~-----vP~~h~-----------~-~l-~~-----ip~-------~aalf~NdC~ylah~l 525 (593)
T PF06248_consen 476 RCAAQLFQTARDIFELYRAV-----VPVYHK-----------K-LL-ES-----IPQ-------QAALFHNDCMYLAHHL 525 (593)
T ss_pred hhHHHHHHHHHHHHHHHHHH-----ccHHHH-----------h-hc-cc-----ccH-------HHHhHhcchHHHHHHH
Confidence 44456777777777777652 232111 0 00 00 001 1145589999999999
Q ss_pred HHHHHHHhhhcCCcccccccCCccchhHHHHHHHHHHHHHH
Q psy17363 526 QQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCIQLLVQ 566 (790)
Q Consensus 526 ~qLe~kl~e~i~~~~~~~i~~~~~~d~f~~vis~~i~~Lv~ 566 (790)
..|..+++....+.+.+-..|-.....|..+...|...-+.
T Consensus 526 ~~l~~~~~~~~~~~~~~~~~f~d~v~~lr~~g~~~~~~q~~ 566 (593)
T PF06248_consen 526 LTLGHEYRSKLPSPLKEIATFVDLVPRLRRLGEECFSAQMQ 566 (593)
T ss_pred HHhHHHHhhcCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777567777778888888877766553
No 15
>KOG2176|consensus
Probab=98.33 E-value=0.00011 Score=86.29 Aligned_cols=130 Identities=22% Similarity=0.198 Sum_probs=112.7
Q ss_pred hhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHH
Q psy17363 39 SVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEE 118 (790)
Q Consensus 39 ~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~ 118 (790)
..-.+-..|-.. +.+.++.++...++.-|.||..+-..|++.=-++-+.|...+.+.++|...+.+...+-+++..
T Consensus 33 ~gP~lRs~~d~~----~~~~~~e~Le~~ir~~d~EIE~lcn~hyQdFidsIdEL~~Vr~daq~Lks~vsd~N~rLQ~~g~ 108 (800)
T KOG2176|consen 33 WGPTLRSVYDGN----QHKPVMEKLENRIRNHDKEIEKLCNFHYQDFIDSIDELLKVRGDAQKLKSQVSDTNRRLQESGK 108 (800)
T ss_pred hhhHHHHHHccC----CcchHHHHHHHHHHhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 334455555533 6788999999999999999999999998866667888999999999999999999999999988
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccc
Q psy17363 119 MVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMP 172 (790)
Q Consensus 119 ~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~l 172 (790)
-+.-...++.+.-..+||+|.++.+++.=--.+..+.+|+.++.+++|=.+...
T Consensus 109 eLiv~~e~lv~~r~~~rnit~ai~~l~~Cl~vLEl~sK~~e~~s~kqyy~aLkt 162 (800)
T KOG2176|consen 109 ELIVKKEDLVRCRTQSRNITEAIELLTLCLPVLELYSKLQEQMSEKQYYPALKT 162 (800)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 888888999999999999999999999999999999999999999998555433
No 16
>KOG2307|consensus
Probab=98.02 E-value=0.009 Score=67.69 Aligned_cols=122 Identities=11% Similarity=0.198 Sum_probs=94.3
Q ss_pred CCCCCCchhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhcccc----CC---cchhhhhhhhHHHHHHHHH
Q psy17363 32 LDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSG----VG---QDGKKALEDSQKVIMQLFS 104 (790)
Q Consensus 32 lds~dfd~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~----~~---~~~~~~l~~~~~~i~~L~~ 104 (790)
+-++|||+..|+++.-. -..++.+...++.+...|...|-+++.+-|- .. -+..+.+-.++.-+.+|-+
T Consensus 28 FmkedFdve~f~s~~R~----~v~letLrddLrlylksl~~aMieLIN~DYADFVnLStnLVgld~aln~i~qpL~qlre 103 (705)
T KOG2307|consen 28 FMKEDFDVERFMSLARQ----KVDLETLRDDLRLYLKSLQNAMIELINDDYADFVNLSTNLVGLDDALNKIEQPLNQLRE 103 (705)
T ss_pred hccccCCHHHHHHHHhc----cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhhhccHHHHHHHHHhHHHHHHH
Confidence 34899999999998766 3567899999999999999999999986552 11 1245567778888888888
Q ss_pred HhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhh
Q psy17363 105 QVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQR 164 (790)
Q Consensus 105 ~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r 164 (790)
+|..++..-.+.+..+++-|.+-.++- .--..|.++.-.+.++++|.+++...
T Consensus 104 ei~s~rgsV~ea~~alr~q~se~~~~R-------e~k~~lldl~~v~~~ieKL~k~L~s~ 156 (705)
T KOG2307|consen 104 EIKSTRGSVGEAERALRQQCSELCSNR-------EKKIELLDLIYVLVAIEKLSKMLLSP 156 (705)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 888888888888888876666655555 33344567777888999999999764
No 17
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=97.57 E-value=0.00034 Score=66.89 Aligned_cols=127 Identities=24% Similarity=0.295 Sum_probs=102.6
Q ss_pred CCCCCCCchhhhhhcccC----cccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHh
Q psy17363 31 VLDDHDFDSVQYINSLFP----TEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQV 106 (790)
Q Consensus 31 ~lds~dfd~~~~In~lfp----~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i 106 (790)
||-+|||||..|-|+++. ..++=..+..-+.++..-+..+|.+|++.|.+++..=-.--...++++..+..+...+
T Consensus 2 ~fl~~dFd~~~fan~ll~~~~~~~~~~ld~~~~l~kL~~~i~eld~~i~~~v~~~~~~LL~q~~~~~~~~~~l~~v~~~v 81 (132)
T PF10392_consen 2 AFLSPDFDPVQFANDLLKSTNNNSDSELDISTPLKKLNFDIQELDKRIRSQVTSNHEDLLSQASSIEELESVLQAVRSSV 81 (132)
T ss_pred CCCCCCCCHHHHHHHHHHhhcCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 577999999999999988 2233347788899999999999999999999887521111223456677778888888
Q ss_pred hhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhh
Q psy17363 107 RDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSL 157 (790)
Q Consensus 107 ~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L 157 (790)
..+....++...-|.+=...|+.+-.+=+|+..+..+|++...++....+|
T Consensus 82 ~~L~~s~~RL~~eV~~Py~~~~~~~~~L~rl~~t~~LLR~~~r~l~L~~rL 132 (132)
T PF10392_consen 82 ESLQSSYERLRSEVIEPYEKIQKLTSQLERLHQTSDLLRSVSRFLQLVRRL 132 (132)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 888888889998898888999999999999999999999988888776654
No 18
>KOG4182|consensus
Probab=97.56 E-value=0.0095 Score=66.20 Aligned_cols=190 Identities=18% Similarity=0.231 Sum_probs=129.7
Q ss_pred CCCCCCCCchhhhhhcc---cCcccccCchhH---HHHHhhhchhhhHHHHHHHHhccccC----CcchhhhhhhhHHHH
Q psy17363 30 DVLDDHDFDSVQYINSL---FPTEQSLSNIDD---VIMKMESNIKEMDEEIETVVRSQSGV----GQDGKKALEDSQKVI 99 (790)
Q Consensus 30 d~lds~dfd~~~~In~l---fp~e~SL~~ld~---l~~~l~~~~~~Ld~ei~~~v~~q~~~----~~~~~~~l~~~~~~i 99 (790)
-|+....|||-+.||.- |..+++=+.-.. .+..+..+.+---.+|...+++|... -.....+....+.+.
T Consensus 4 g~fSdekFda~~WiNancka~h~ed~rddsea~e~~i~dle~KLQia~eeigaalEEqSggal~rmPRaakd~~~Lq~Da 83 (828)
T KOG4182|consen 4 GAFSDEKFDAAEWINANCKAFHEEDGRDDSEAAEAFIRDLEAKLQIAIEEIGAALEEQSGGALARMPRAAKDSAALQADA 83 (828)
T ss_pred ccccccccCHHHHHhhhhhhcccccCcccHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccchHhhCchhhhHHHHHHHHH
Confidence 36778889999999974 443444333222 23333333333334555666666531 111333455778888
Q ss_pred HHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHH
Q psy17363 100 MQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEV 179 (790)
Q Consensus 100 ~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L 179 (790)
..|.++|..|..+-...|..-.+-..-..+||+.|..+...-..|+.=..+.+....|+.-..+++.+.++.-|.++..-
T Consensus 84 ~~Lq~kma~il~el~~aegesadCiAaLaRldn~kQkleaA~esLQdaaGl~nL~a~lED~Fa~gDL~~aadkLaalqkc 163 (828)
T KOG4182|consen 84 HRLQEKMAAILLELAAAEGESADCIAALARLDNKKQKLEAAKESLQDAAGLGNLLAELEDGFARGDLKGAADKLAALQKC 163 (828)
T ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Confidence 88999998888777666665566667778999999999999999999889999999999988888988888888877766
Q ss_pred HhhccCCCChhHHHHHHHHHHHHHhHhHHHHHHHHHhhhcCCC
Q psy17363 180 MKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPS 222 (790)
Q Consensus 180 ~~~F~~y~~i~~i~~L~~~v~~l~~~l~~qI~~df~~~~~~~~ 222 (790)
+ ..-..++..++..++++.+.+.|..-..-.+...|..+.
T Consensus 164 L---~A~~elaefAe~qkQlE~~edRLEAlaqPrltda~a~~k 203 (828)
T KOG4182|consen 164 L---HAQEELAEFAERQKQLEDFEDRLEALAQPRLTDAFAEGK 203 (828)
T ss_pred H---HHHHHhHHHHHHHHHHHHHHHHHHHHcCchHHHHHHccC
Confidence 6 234456777777888887777766555444444554443
No 19
>PF04124 Dor1: Dor1-like family ; InterPro: IPR007255 Dor1 is involved in vesicle targeting to the yeast Golgi apparatus and complexes with a number of other trafficking proteins, which include Sec34 and Sec35 [].
Probab=97.48 E-value=0.0023 Score=70.93 Aligned_cols=225 Identities=14% Similarity=0.236 Sum_probs=150.3
Q ss_pred cccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhh-------HHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy17363 51 QSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDS-------QKVIMQLFSQVRDIKSKAEKSEEMVREI 123 (790)
Q Consensus 51 ~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~-------~~~i~~L~~~i~~Ik~~a~~sE~~V~~i 123 (790)
.+++.+-.--..+..++.+++.+|+.+.++++..-.+..+..... ...+..|...+.++.+.+........++
T Consensus 7 ~~l~~L~~Ep~~L~~~~~~l~~ql~~La~~~y~~fi~~~~~~~~i~~~~~~~~~~l~~L~~~l~~L~~~~~~f~~~~~~~ 86 (338)
T PF04124_consen 7 LSLESLFSEPQSLSEEIASLDAQLQSLAFRNYKTFIDNAECSSDIRQELSSLSDSLDSLLDSLPELDEACQRFSSKAQKI 86 (338)
T ss_pred CCHHHHHhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666667778889999999999999988876333333333333 4444444555555555554444444444
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCCCChhHHHHHHHHHHHHH
Q psy17363 124 TRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQ 203 (790)
Q Consensus 124 t~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y~~i~~i~~L~~~v~~l~ 203 (790)
... ++....+..-..+|.-+...+.=++.++.++.|.++..+...+..|. ..|.++|-|+.+..++....
T Consensus 87 ~~~-------r~~~~~~l~~~~~l~diLElP~Lm~~ci~~g~y~eALel~~~~~~L~---~~~~~~~lv~~i~~ev~~~~ 156 (338)
T PF04124_consen 87 SEE-------RKKASLLLENHDRLLDILELPQLMDTCIRNGNYSEALELSAHVRRLQ---SRFPNIPLVKSIAQEVEAAL 156 (338)
T ss_pred HHH-------HHHHHHHHHHHHHHHHHHhhHHHHHHHHhcccHhhHHHHHHHHHHHH---HhccCchhHHHHHHHHHHHH
Confidence 333 33334555556778888889999999999999999999999999999 45788999999999998887
Q ss_pred hHhHHHHHHHHHhhhcCCCCCCCcChhHHHHHHhhhhccChhhhhhHHHHHHHhhccceeeeeccCcchhhHhhhhhHHH
Q psy17363 204 NTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYA 283 (790)
Q Consensus 204 ~~l~~qI~~df~~~~~~~~~~~~~~~~~l~daC~vvd~l~~~~k~~li~~~~~~~L~ey~~~F~~~~ea~~Ld~i~rRy~ 283 (790)
..+..++..-++.=+ .+. +| =+++.|....- .|.++. =.+--+.-|..
T Consensus 157 ~~ml~~Li~~L~~~l------------~l~-~~-----------ik~v~~Lrrl~------~~~e~~--Lr~~fl~~r~~ 204 (338)
T PF04124_consen 157 QQMLSQLINQLRTPL------------KLP-AC-----------IKTVGYLRRLP------VLTESE--LRLKFLQSRDS 204 (338)
T ss_pred HHHHHHHHHHHcCcc------------cHH-HH-----------HHHHHHHHHhc------cccchH--HHHHHHHHHHH
Confidence 777777776554211 111 22 13455543331 221111 12223445999
Q ss_pred HHHhhhccccccccccCCCcccccchhhHHHHHhhhhhhhhhhh
Q psy17363 284 WFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMS 327 (790)
Q Consensus 284 Wf~r~L~~~e~~~~~iFP~~W~v~~~l~~~Fc~~Tr~~L~~iL~ 327 (790)
|+...|...... .+..+.+.|.++.|.++=.++.
T Consensus 205 ~l~~~l~~i~~~----------~~~~~lkr~iei~R~~~fdiit 238 (338)
T PF04124_consen 205 WLQSVLEEIDKS----------DPYRYLKRYIEIYREHLFDIIT 238 (338)
T ss_pred HHhhhHHHHhhh----------hHHHHHHHHHHHHHHHHHHHHH
Confidence 999988877653 4689999999999999876664
No 20
>PF15469 Sec5: Exocyst complex component Sec5
Probab=97.46 E-value=0.00068 Score=68.41 Aligned_cols=108 Identities=18% Similarity=0.237 Sum_probs=86.7
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHH
Q psy17363 99 IMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIE 178 (790)
Q Consensus 99 i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~ 178 (790)
+..|.+.|.++...+...-.-|-+....+..+- .++..|+|.+.|++.+.+|+..+.+++|..+++.|..++.
T Consensus 42 ~~~L~~~l~~~~~~~~~~~~pll~~~~k~~~l~-------~~l~~l~r~~flF~LP~~L~~~i~~~dy~~~i~dY~kak~ 114 (182)
T PF15469_consen 42 TEKLEESLNEASSKANSVFKPLLERREKADKLR-------NALEFLQRNRFLFNLPSNLRECIKKGDYDQAINDYKKAKS 114 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHH-------HHHHHHHHHHHHHHhHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 455555666555555555555555445555555 9999999999999999999999999999999999999999
Q ss_pred HHhhccCCC-ChhHHHHHHHHHHHHHhHhHHHHHHHHHh
Q psy17363 179 VMKHFQDST-DIPQILELRSQVAQIQNTLSEQITQDLKN 216 (790)
Q Consensus 179 L~~~F~~y~-~i~~i~~L~~~v~~l~~~l~~qI~~df~~ 216 (790)
+. ++|+ .++-+..+..+|+.+..+++..+...+..
T Consensus 115 l~---~~~~~~~~vf~~v~~eve~ii~~~r~~l~~~L~~ 150 (182)
T PF15469_consen 115 LF---EKYKQQVPVFQKVWSEVEKIIEEFREKLWEKLLS 150 (182)
T ss_pred HH---HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98 5577 89999999999999988888888776654
No 21
>PF05664 DUF810: Protein of unknown function (DUF810); InterPro: IPR008528 This family consists of several plant proteins of unknown function.
Probab=97.42 E-value=0.011 Score=70.71 Aligned_cols=221 Identities=18% Similarity=0.276 Sum_probs=143.4
Q ss_pred cccccccccCCCcccccch--hhHHHHHhhhhhhhhhhhccccchhHHHHHHHHhccccHHHHHHhhccCccccc-----
Q psy17363 291 HVEDKFGTLFPPHWQLSEK--ITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEG----- 363 (790)
Q Consensus 291 ~~e~~~~~iFP~~W~v~~~--l~~~Fc~~Tr~~L~~iL~~~~~~idv~lLl~alq~T~~FE~~l~krf~~~~~~~----- 363 (790)
.-.+.|.++| +.|+=... -+...|..=..+|+..|... ..+.+. .+..|+..-.||+.|.+-.+ ...+.
T Consensus 429 ~e~~~FsPiL-k~whP~a~~VAa~~LH~~Yg~~Lk~~L~~~-~~LT~d-~v~VL~aA~~LEk~Lvq~~~-~~~edggk~~ 504 (677)
T PF05664_consen 429 KEKEVFSPIL-KRWHPNAAGVAAATLHSCYGNELKQFLSGV-THLTPD-VVEVLQAADKLEKALVQMVS-VDCEDGGKSL 504 (677)
T ss_pred HhHHhcCchh-cccCchHHHHHHHHHHHHHHHHHHHHHccc-ccCCHH-HHHHHHHHHHHHHHHHHHHH-hhcccccccc
Confidence 3345688887 56765443 45667777778888888653 233333 35889999999999985431 11100
Q ss_pred -cccccccchhhhhccchhhhhhhhhccchHHHHHHHhhhHHHHHhchhhhhccCCCCCCcchhhHHHHhhhcccccccc
Q psy17363 364 -ENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQL 442 (790)
Q Consensus 364 -~~~~~f~g~iS~~FepyL~~yv~~qdk~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~l 442 (790)
.+.+||. +-+.+.+++.-||+.+.+.+.+.+++-+..++|. |-. ....--+|++|+|+++++.+++-.++
T Consensus 505 ~rem~Py~--vE~~i~~lv~~Wi~~~~~~l~ewv~ra~~qE~W~----P~S---~~e~hs~SvVEvfri~~eTvd~ff~L 575 (677)
T PF05664_consen 505 IREMPPYE--VESLISNLVKRWIQEQLERLNEWVDRAIKQEKWN----PRS---KEERHSPSVVEVFRIFNETVDQFFQL 575 (677)
T ss_pred ccCCCcee--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC----cCC---CCCCCcchHHHHHHHHHHHHHHHHcC
Confidence 1234553 7888899999999999999999999998877664 221 23556679999999999999999997
Q ss_pred ccC---CchHHHHHHHHHHHHHHHHHHHhhhh------hhh---hc-cccccc-----hhccccccccccccccc-cccC
Q psy17363 443 STG---EPMVALATTFQQYLRHYAHKVLQQNV------SKQ---AG-QTANTT-----LASVSNITRDLGLIKDQ-RTKY 503 (790)
Q Consensus 443 s~g---~~L~~L~~~f~k~L~~Ya~~iL~~~l------p~~---~~-~~~~~~-----~s~~~~~~~~~~~~ke~-~~~~ 503 (790)
.=+ ..|.+|+.-+-++|..|...+..+.- |.. +. +.+..+ -....+.. ..+. ....
T Consensus 576 ~~~~~~~~l~~L~~gld~~lq~Y~~~v~~~~gsk~~liP~~P~LTR~~~~sk~~~~~Kk~~~~~~~-----~~~~~~~~~ 650 (677)
T PF05664_consen 576 PWPMHADFLQALSKGLDKALQRYCEKVEQSCGSKQSLIPPLPPLTRCKKDSKFKKLWKKKWKSSTN-----PDERFSSKI 650 (677)
T ss_pred CCCCchHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCchhhhhhhhhhHHHHHHHHhcCccc-----cccccccCc
Confidence 543 45888999999999999998743222 211 00 000000 00000000 0000 0011
Q ss_pred CcccccceeEeecchhHHHHhHHHHH
Q psy17363 504 TPQEQAKICCVLTTAEYCLETTQQLE 529 (790)
Q Consensus 504 ~~~~~~~ic~ilnTAdYc~~t~~qLe 529 (790)
+....-.+|+-|||=+|...-++.||
T Consensus 651 ~~~~~~~lcVrLNtL~yil~qL~~LE 676 (677)
T PF05664_consen 651 NSQFTPRLCVRLNTLEYILSQLDKLE 676 (677)
T ss_pred ccCccCceeeeecHHHHHHHHHHhhc
Confidence 12345678999999999998888876
No 22
>PF08700 Vps51: Vps51/Vps67; InterPro: IPR014812 The VFT tethering complex (also known as GARP complex, Golgi associated retrograde protein complex, Vps53 tethering complex) is a conserved eukaryotic docking complex which is involved in recycling of proteins from endosomes to the late Golgi. Vps51 (also known as Vps67) is a subunit of VFT and interacts with the SNARE Tlg1 [].
Probab=97.37 E-value=0.00044 Score=60.93 Aligned_cols=82 Identities=18% Similarity=0.370 Sum_probs=60.9
Q ss_pred CCCCCCchhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhh
Q psy17363 32 LDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKS 111 (790)
Q Consensus 32 lds~dfd~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~ 111 (790)
|++++|||..|+.++++ ..++..|..+.+.+..++...+.+|+..|+++|.. |=.+-.+|..+-..+..++.
T Consensus 1 ~~~~~fd~~~~~~~~l~-~~s~~~i~~~~~~L~~~i~~~~~eLr~~V~~nY~~-------fI~as~~I~~m~~~~~~l~~ 72 (87)
T PF08700_consen 1 FDSENFDVDEYFKDLLK-NSSIKEIRQLENKLRQEIEEKDEELRKLVYENYRD-------FIEASDEISSMENDLSELRN 72 (87)
T ss_pred CCCCcCCHHHHHHHHHh-hCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999 56799999999999999999999999999999852 33334444444444444444
Q ss_pred hhhhhHHHHH
Q psy17363 112 KAEKSEEMVR 121 (790)
Q Consensus 112 ~a~~sE~~V~ 121 (790)
...+....++
T Consensus 73 ~l~~l~~~~~ 82 (87)
T PF08700_consen 73 LLSELQQSIQ 82 (87)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 23
>KOG2347|consensus
Probab=97.32 E-value=0.078 Score=63.37 Aligned_cols=171 Identities=13% Similarity=0.247 Sum_probs=98.1
Q ss_pred CCCCCCCCCchhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHH----------
Q psy17363 29 TDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKV---------- 98 (790)
Q Consensus 29 ~d~lds~dfd~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~---------- 98 (790)
.| +.+.+|+|-=|+-+.=. .-|...+..-+..+..+...=.+.=...|+++.+.--+..+.+...++.
T Consensus 164 ~D-l~se~Fspkw~L~enH~-~ts~edLk~~i~~lK~~~n~~~~~~~~lvK~n~~~fi~~~dtl~~i~~kLe~~e~~~~g 241 (934)
T KOG2347|consen 164 VD-LRSEHFSPKWFLLENHQ-DTSFEDLKAGILNLKRDLNGRKEGSLQLVKDNFDSFISCKDTLDNIHQKLERGEEDPHG 241 (934)
T ss_pred cc-cccccCChhHHHHhhhh-hccHHHHHHHHHHHHHhhcchhhhhHHHHhcchhHHHHHHHHHHHHHHHHhccccCccc
Confidence 36 78999999999988644 3444455555555554444433444445555443211111111111111
Q ss_pred --HHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhH
Q psy17363 99 --IMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGV 176 (790)
Q Consensus 99 --i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~ 176 (790)
...|..-|......|.. ..++. +.+=|.|-.-= .+.-+|.|+..|.+.+...+.-++++.|.-+++-|...
T Consensus 242 s~t~~l~n~i~~~~s~ad~---iF~~v---l~Rk~~ADstR-svL~~lqRfkfLFnLp~~ier~i~kGeYd~vvndYekA 314 (934)
T KOG2347|consen 242 SGTTKLENCIKNSTSRADL---IFEDV---LERKDKADSTR-SVLGVLQRFKFLFNLPSNIERSIKKGEYDTVVNDYEKA 314 (934)
T ss_pred hHHHHHHHHHHHhhhHHHH---HHHHH---HhcccccccHH-HHHHHHHHHHHHHhcchhhhhHhhcCCceeeccchhhH
Confidence 11233333333322222 22221 11112221111 55678999999999999999999999999999999999
Q ss_pred HHHHhhccCCCChhHHHHHHHHHHHHHhHhHHHHHH
Q psy17363 177 IEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQ 212 (790)
Q Consensus 177 ~~L~~~F~~y~~i~~i~~L~~~v~~l~~~l~~qI~~ 212 (790)
+.+.. =..||-++..+.+|+.---.++..+.+
T Consensus 315 Ksl~~----~t~v~~Fkk~l~Eve~~m~~~k~~l~~ 346 (934)
T KOG2347|consen 315 KSLFG----KTEVNLFKKVLEEVEKRMQSFKETLYR 346 (934)
T ss_pred HHhhc----ccccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99972 244777777777777665555544443
No 24
>KOG2180|consensus
Probab=96.66 E-value=0.59 Score=55.13 Aligned_cols=144 Identities=13% Similarity=0.063 Sum_probs=106.1
Q ss_pred ccceecccccchhHHHHHHHhhhhchhHHHHh--------hhhc-cccccccchhHHHHHHHHHHHHhccCCCchhhhh-
Q psy17363 608 VPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQ--------HVFK-CKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVV- 677 (790)
Q Consensus 608 ~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~--------~l~k-~k~is~~gaeQLllD~~~Lk~~ll~lp~~~~~~~- 677 (790)
-|.++... .-.+|.|.|.++....++|.-+. .+++ |..-...++.+.++|++..++.....|...-+.+
T Consensus 438 dpl~~~~~-~f~k~LreYa~kil~~~lP~~t~~s~g~~v~~l~~~e~~~~~~~t~d~l~di~~~lst~e~~~~tt~qle~ 516 (793)
T KOG2180|consen 438 DPLIALLA-VFSKWLREYAQKILLGNLPDTTSSSDGAAVYLLLRIEGAEYCRFTIDQLLDICCILSTAEYCLATTIQLEK 516 (793)
T ss_pred chHHHHHH-HHHHHHHHHHHHHhhccCCcccccccCchhhhHHHhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444432 23567777777776666554321 1222 4444566778999999999999998886654321
Q ss_pred ---hcCCccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhhhCCCCchhHHHHHhhccCCccccccccccccCCCCC
Q psy17363 678 ---RKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNNLINLFRPKNP 754 (790)
Q Consensus 678 ---~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~l~~d~s~~~f~kIL~lKg~~r~eq~~lle~f~~~~~ 754 (790)
.+..++|.+.|+-.+.+.+...++..+|... -.+.|..+.||.++-.++.+..++|++ +|++++..+..+.+
T Consensus 517 kl~e~~~~~~~~~vs~s~~r~~~~~~~~~s~q~l---v~D~e~a~~~~lt~msk~~~~~l~~vg--DQss~v~s~~~h~~ 591 (793)
T KOG2180|consen 517 KLKEIVDASYIKGVSFSEEREVFSSKISVSLQFL---VQDLENALDPDLTPMSKMQWQNLEGVG--DQSSYVSSLNFHLS 591 (793)
T ss_pred HHHHHHHHHHhhhcchHHHHHHHHHHHhhhHHHH---HHHHHHhhCcccChHHHHHHHHhcCcc--ccchhhHHHHHHHH
Confidence 2456789999999999999999998887543 467788899999999999999999998 99999999987776
Q ss_pred CCC
Q psy17363 755 SNT 757 (790)
Q Consensus 755 ~~~ 757 (790)
...
T Consensus 592 q~~ 594 (793)
T KOG2180|consen 592 QFV 594 (793)
T ss_pred hhh
Confidence 443
No 25
>PF06148 COG2: COG (conserved oligomeric Golgi) complex component, COG2; InterPro: IPR024602 This entry represents the uncharacterised N-terminal domain of subunit 2 of the COG complex. The COG complex comprises eight proteins COG1-8 and plays critical roles in Golgi structure and function [].; PDB: 2JQQ_A.
Probab=96.61 E-value=0.00086 Score=64.18 Aligned_cols=122 Identities=16% Similarity=0.293 Sum_probs=33.7
Q ss_pred CCCCCCCCCCchhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhcccc----CCcc---hhhhhhhhHHHHH
Q psy17363 28 STDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSG----VGQD---GKKALEDSQKVIM 100 (790)
Q Consensus 28 ~~d~lds~dfd~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~----~~~~---~~~~l~~~~~~i~ 100 (790)
+.+.|..|+|||.+||.+..+ -..|+++...++.+...++++|-+.|.+.|. .++. +...+...+..+.
T Consensus 4 ~~~~F~~~~Fd~d~Fl~~~~~----~~~Le~L~~dL~~~~~~L~~~Li~lIN~dY~dFv~Ls~~L~g~~~~i~~l~~~L~ 79 (133)
T PF06148_consen 4 DKEEFTKPDFDVDEFLSSNRR----YVSLEDLRKDLRSYSKELKNELIELINDDYADFVSLSTNLVGMDEKIEELRKPLS 79 (133)
T ss_dssp --------------------------------------------------------------------------HHHHHH
T ss_pred cccccCCCCCCHHHHHHHccC----CCCHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHccHHHHHHHHHHHHH
Confidence 345677899999999999544 3567899999999999999999999998875 2222 4556777777777
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHH
Q psy17363 101 QLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTL 160 (790)
Q Consensus 101 ~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l 160 (790)
.+..++..++....++...|+.....-+.+. .-...++.+..+...+++++.+
T Consensus 80 ~~~~~v~~~~~~l~~~~~~i~~~l~~~~~l~-------~~k~~l~~~l~~~~~~~kle~l 132 (133)
T PF06148_consen 80 QFREEVESVRDELDNTQEEIEDKLEERKELR-------EEKALLKLLLDISESLEKLEDL 132 (133)
T ss_dssp HHHHHHHHHHHS-STTHHHHHHHHHHHHHHH-------HHHHT-SSSSHHH---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhhhhccccccc
Confidence 7777777777777777777766655555555 4456677777777777777665
No 26
>PF04048 Sec8_exocyst: Sec8 exocyst complex component specific domain; InterPro: IPR007191 Sec8 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0015031 protein transport, 0000145 exocyst
Probab=96.61 E-value=0.0069 Score=58.66 Aligned_cols=127 Identities=15% Similarity=0.204 Sum_probs=111.3
Q ss_pred CCCCCCchhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhh
Q psy17363 32 LDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKS 111 (790)
Q Consensus 32 lds~dfd~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~ 111 (790)
+-.++|+|++..=.++. +.|+ +++....+++.....++..|+..|.++++.=+.+...+..+...|.+-.++|..+|.
T Consensus 16 ~~~~~~~pv~~al~~ld-~ss~-g~~~~~~~f~~~~~~~~~~L~~vV~eh~q~Fn~sI~sy~~i~~~i~~sq~~i~~lK~ 93 (142)
T PF04048_consen 16 MLTDDFNPVELALSLLD-DSSV-GRAHRYQEFEELKKRIEKALQEVVNEHYQGFNSSIGSYSQILSSISESQERIRELKE 93 (142)
T ss_pred HhcCCCcHHHHHHHhcC-CCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33688999999999888 4444 578888999999999999999999999987667777888888999999999999999
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHH
Q psy17363 112 KAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTL 160 (790)
Q Consensus 112 ~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l 160 (790)
.-+++-..+..-..++++|-..-......|.+|+.+.-+...+++++.+
T Consensus 94 ~L~~ak~~L~~~~~eL~~L~~~s~~~~~mi~iL~~Ie~l~~vP~kie~l 142 (142)
T PF04048_consen 94 SLQEAKSLLGCRREELKELWQRSQEYKEMIEILDQIEELRQVPDKIESL 142 (142)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcC
Confidence 9999999999889999999999999999999999999999999888753
No 27
>PF10474 DUF2451: Protein of unknown function C-terminus (DUF2451); InterPro: IPR019514 This protein is found in eukaryotes but its function is not known. The N-terminal domain of some members is PF10475 from PFAM (DUF2450).
Probab=96.49 E-value=0.0098 Score=62.45 Aligned_cols=212 Identities=16% Similarity=0.205 Sum_probs=132.2
Q ss_pred chhHHHHhHHHHHHHHhhhcCCcccccc--cCCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhhccccccccccCcc
Q psy17363 517 TAEYCLETTQQLEQKLKEKVDPNLANKI--DLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQS 594 (790)
Q Consensus 517 TAdYc~~t~~qLe~kl~e~i~~~~~~~i--~~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k~~W~~~e~vgd~S 594 (790)
+-.|...-...+..-+...+.+...+.+ =++...+.-.++...|....++.+. +.+.....|.++.|.--+....+|
T Consensus 13 Sl~fLa~~l~~~~p~l~~lLp~~~~~~l~~Fy~~tv~~v~dLr~~iy~~~a~~~l-~~~~i~~~Ia~vKWdvkev~~qhs 91 (234)
T PF10474_consen 13 SLSFLARQLESLRPYLESLLPPNKRDFLEQFYSQTVSAVPDLREPIYKCVASRLL-DLEQILNSIANVKWDVKEVMSQHS 91 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHcCCCCCCCCCccC
Confidence 3345666666677777777765533322 1122334444556666655555553 566778899999997655455589
Q ss_pred ccchhhhhhhhccccce---ecccccchhHHHHHHHhhhhchhHHHHhhhhccccccccchhHHHHHHHHHHHHhccCCC
Q psy17363 595 GYVTAITSHLKQSVPLI---RTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPS 671 (790)
Q Consensus 595 ~Yv~~i~~~l~~~~~~i---~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l~k~k~is~~gaeQLllD~~~Lk~~ll~lp~ 671 (790)
+||..+...+......+ .....-++.--+.+++.++..+...+++..-+.|+-|+-|=.+|.+|.+.+..-|..+-.
T Consensus 92 ~YVd~l~~~~~~f~~rL~~i~~~~~i~~~~~~~lw~~~i~~~~~~Lveg~s~vkKCs~eGRalM~lD~q~~~~~le~l~~ 171 (234)
T PF10474_consen 92 SYVDQLVQEFQQFSERLDEISKQGPIPPEVQNVLWDRLIFFAFETLVEGYSRVKKCSNEGRALMQLDFQQLQNKLEKLSG 171 (234)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHHHHHHcC
Confidence 99999988887664322 111111123333466777777777788888888999999999999999999998887643
Q ss_pred chhhhhhcCCccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhhhCCCCchhHHHHHhhc-cCCcccccccccc
Q psy17363 672 IGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPESDMTEFQRILDM-KGLKTNEKNNLIN 747 (790)
Q Consensus 672 ~~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~l~~d~s~~~f~kIL~l-Kg~~r~eq~~lle 747 (790)
.. .+| ...-+|..+|..=.|.+ ++.+ |.+--+..+..-+.-++.+ .+.+|...+.+++
T Consensus 172 ~~-----~~p---------~~~~Ve~YIKAyYl~e~---e~~~-W~~~h~eYs~~ql~~Lv~~~~~~~kk~r~~ll~ 230 (234)
T PF10474_consen 172 IR-----PIP---------NREYVENYIKAYYLPEE---ELEE-WIRTHTEYSKKQLVGLVNCAAASKKKTRQRLLN 230 (234)
T ss_pred CC-----CCc---------cHHHHHHHHHHHcCCHH---HHHH-HHHhCcccCHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 21 112 34557777777776632 2222 4333355666666666666 4556666666554
No 28
>KOG3745|consensus
Probab=95.86 E-value=1.1 Score=53.50 Aligned_cols=330 Identities=14% Similarity=0.196 Sum_probs=182.7
Q ss_pred CCCCchhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhh
Q psy17363 34 DHDFDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKA 113 (790)
Q Consensus 34 s~dfd~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a 113 (790)
+.+|||..++-....+..+|.-+++ +.+++++-+++++++.-.+...-...-+..+..+-.-+.+|-+++..+..+-
T Consensus 46 ~~~~~~~~l~~~f~~~~~eL~~L~e---~~qnk~~~~e~~~~~~q~s~~kkv~~lr~k~~~a~~l~~~ld~~~~~v~~~v 122 (763)
T KOG3745|consen 46 SKDLDPKGLIKTFENEIKELTLLDE---RYQNKIRMLEEQMSTEQNSYKKKVDKLREKNSTALLLFLQLDDNIFPVSYKV 122 (763)
T ss_pred hhhcCcHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhhhhcccccccccc
Confidence 6789999999998887777777766 7888999999999876544443333344555666666666666666666555
Q ss_pred hhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhh-hhhHHHHHhh---hccccccchhhHHHHHhhccCCCCh
Q psy17363 114 EKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGV-HSLRTLIEQR---QYGEIVMPLQGVIEVMKHFQDSTDI 189 (790)
Q Consensus 114 ~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v-~~L~~l~~~r---~Y~e~~~ll~~~~~L~~~F~~y~~i 189 (790)
...-+ .+-....-++|-..+.+.+++..-+..+. .-+...+... ...+++..+.-...+++. +- -
T Consensus 123 v~lgq-------~Le~v~~~r~r~~~a~~lir~~~eF~s~~~~~i~s~i~~~~~~k~leaa~~~~kLl~isne---l~-~ 191 (763)
T KOG3745|consen 123 VHLGQ-------QLETVIKPRSRAVDAQELIRYYNEFLSGGRQYINSDIFTSAFDKNLEAADRIKKLLLISNE---LP-Y 191 (763)
T ss_pred ccHHH-------HHHHhhhhHHHHHHHHHHHHHHHHHhccCchhHHHHHhcChhhhHHHHHHHHHHHHHHhcc---CC-c
Confidence 33322 22233344467777888888887776664 4555555443 344555555544445432 21 2
Q ss_pred hHHHHHHHHHHHHHhHhHHHHHHHHHhhhcCCCCCCCcChhHHHHHHhhhhccChhhhhhH--HHHHHHhhccceeeeec
Q psy17363 190 PQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNI--LEWFISLQLSEYLVLFD 267 (790)
Q Consensus 190 ~~i~~L~~~v~~l~~~l~~qI~~df~~~~~~~~~~~~~~~~~l~daC~vvd~l~~~~k~~l--i~~~~~~~L~ey~~~F~ 267 (790)
+...+-..++.+--..+-....+.|......+++ +.|++-..+++-...-+|.=+ .+.|++.+ .|+
T Consensus 192 ~~f~~tka~I~k~~~~lE~~lleeF~~~~R~~n~------~~m~~~a~iL~~F~G~v~~y~n~~d~fid~~------~~~ 259 (763)
T KOG3745|consen 192 GKFSETKARIEKKYEVLEQNLLEEFNSAQREENI------KKMAEFAKILSEFKGVVRMYLNCVDDFIDSD------EFQ 259 (763)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccH------HHHHHHHHHHHHhcchHHHHHHhHHHHHHHh------hcc
Confidence 2666666777777777788888888888776543 456664444433222222111 33444431 222
Q ss_pred cCcchhhHhhhh-hHHHHHHhhhccccccccccCCCcccccch-hhHHHHHhhhhhhhhhhhccc--c--chhHHHHHHH
Q psy17363 268 ESEDSAWLDKID-KRYAWFKKQLLHVEDKFGTLFPPHWQLSEK-ITLEFCERTRSELGKIMSKRK--F--EIDVKLLLYA 341 (790)
Q Consensus 268 ~~~ea~~Ld~i~-rRy~Wf~r~L~~~e~~~~~iFP~~W~v~~~-l~~~Fc~~Tr~~L~~iL~~~~--~--~idv~lLl~a 341 (790)
. +...++++- .=|.=.-..+.........+||..=-|-.. +-.-|..-.++-+..+|..-. . ..=+..|...
T Consensus 260 ~--~~~fi~~~~~di~~D~~~l~~~~sk~ik~vf~~pe~V~q~~iq~If~~~ik~~~~e~le~~~~~~~~l~ylR~L~~L 337 (763)
T KOG3745|consen 260 P--EQPFISNILQDIFNDILKLCESESKFIKRVFPNPETVLQKFIQNIFGQKIKDRVEELLEECKEGKDFLAYLRDLYGL 337 (763)
T ss_pred c--hhhHHHHHHHHHHHHHHHHHHhHhHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 1 111111100 001112233444444556677754443222 223344444555555554211 0 1112234444
Q ss_pred HhccccHHHHHHhhccCccccccccccccchhhhhccchhhhhhhhhccch
Q psy17363 342 IQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNL 392 (790)
Q Consensus 342 lq~T~~FE~~l~krf~~~~~~~~~~~~f~g~iS~~FepyL~~yv~~qdk~l 392 (790)
...|.++=+.|..-|.. .+.......+.-.+..||+.|+..|++.+++.+
T Consensus 338 ys~~~k~~~~L~~~~e~-~~~~~d~~~lst~~~q~f~~~~~~y~e~e~~~~ 387 (763)
T KOG3745|consen 338 YSSTLKLSKDLVDYFEQ-LFISDDNQFLSTLLEQIFIDYLAKYIEVEDKYL 387 (763)
T ss_pred HHHHHhhhHHHHHHHHh-hccCcchhHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 44555555555443210 011122345677899999999999999999988
No 29
>KOG2211|consensus
Probab=95.52 E-value=3.3 Score=48.81 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=40.9
Q ss_pred CCCCCCcchhhHHHHhhhccccccccccCCc-hHHHHHHHHHHHHHHHHHHHhhhhh
Q psy17363 417 SAAPVLPSCADLFMFYKKSLVQCTQLSTGEP-MVALATTFQQYLRHYAHKVLQQNVS 472 (790)
Q Consensus 417 ~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g~~-L~~L~~~f~k~L~~Ya~~iL~~~lp 472 (790)
.+..|+||.-+|-.|++-+=...+..+...- -..++++|.++++.|..+. ...+|
T Consensus 453 ~gr~~lPs~eeld~~I~hi~~el~av~~d~rlTlavs~~~ak~i~~l~~ka-e~qis 508 (797)
T KOG2211|consen 453 MGRSVLPSMEELDTYINHIDMELAAVSRDVRLTLAVSQIAAKVIDSLILKA-ELQIS 508 (797)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-Hhhhc
Confidence 4677899999999999988766655555433 3457799999999998863 44444
No 30
>KOG1011|consensus
Probab=94.05 E-value=1.2 Score=51.82 Aligned_cols=209 Identities=14% Similarity=0.214 Sum_probs=127.8
Q ss_pred hhHHHHHHHhhc-cceeeeeccCcch--hhHhhhhhHHHHH---Hhhhcccccccc---ccCCCcccccchhhHHHHHhh
Q psy17363 248 KNILEWFISLQL-SEYLVLFDESEDS--AWLDKIDKRYAWF---KKQLLHVEDKFG---TLFPPHWQLSEKITLEFCERT 318 (790)
Q Consensus 248 ~~li~~~~~~~L-~ey~~~F~~~~ea--~~Ld~i~rRy~Wf---~r~L~~~e~~~~---~iFP~~W~v~~~l~~~Fc~~T 318 (790)
..+++-++...| .-|..+|..-.|. -+.-|++=.|..+ .+.+.+=+..|. +-||..-+|...-+...-.+-
T Consensus 609 sqvvkdcvkaclnstye~ifnnchelys~s~~nldfw~klit~ivsiieedknsytp~lnqfpqelnvgk~saevmw~lf 688 (1283)
T KOG1011|consen 609 SQVVKDCVKACLNSTYEYIFNNCHELYSPSITNLDFWYKLITLIVSIIEEDKNSYTPALNQFPQELNVGKLSAEVMWSLF 688 (1283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCccccchhhHHHHHHHHHHHHHhccccCChhhhhChhhhccccchHHHHHHHH
Confidence 445555555544 3455555421111 1233445444443 444443333443 469999999988888888888
Q ss_pred hhhhhhhhhccc-----cchhHHHHHHHHhccccHHHHHHhhccCccccccccccccchh---hhhccchhhhhhhhhcc
Q psy17363 319 RSELGKIMSKRK-----FEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGII---GSCFQNYLYIYIESLDR 390 (790)
Q Consensus 319 r~~L~~iL~~~~-----~~idv~lLl~alq~T~~FE~~l~krf~~~~~~~~~~~~f~g~i---S~~FepyL~~yv~~qdk 390 (790)
.+|++..|.... .+.| .|+..-+.+.|.++--... +.|+|.+ ..-|+||.--|++.-++
T Consensus 689 aqdmk~aleeh~k~~~cksad---ymnl~fkvk~ly~eyv~dl----------p~~k~~vpeypawf~pfv~qwldenee 755 (1283)
T KOG1011|consen 689 AQDMKYALEEHAKKKLCKSAD---YMNLHFKVKWLYNEYVADL----------PTYKSSVPEYPAWFEPFVMQWLDENEE 755 (1283)
T ss_pred HHHHHHHHHHHhhhccccCcc---hhheeeehhhhHHHHHhhc----------hhhhccCCCchHHHHHHHHHHhccchH
Confidence 999988885322 1233 2332333333433332222 2334433 23589999999999888
Q ss_pred chHHHHHHHhhhHHHHHhchhhhhccCCCCCCcchhhHHHHhhhccccccccccCCc------hHHHHHHHHHHHHHHHH
Q psy17363 391 NLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEP------MVALATTFQQYLRHYAH 464 (790)
Q Consensus 391 ~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g~~------L~~L~~~f~k~L~~Ya~ 464 (790)
.-.+++.......+..+ .+... +....--|.+|.|.-.++.++-..++--..| |...++...|+|-.||+
T Consensus 756 ~s~dflrga~e~dkkdg--f~qts--eha~fs~svvdvftqlnqsfeiikklecpdp~i~ah~mrrfakti~kvllqyad 831 (1283)
T KOG1011|consen 756 VSMDFLRGALERDKKDG--FQQTS--EHALFSCSVVDVFTQLNQSFEIIKKLECPDPEIAAHYMRRFAKTINKVLLQYAD 831 (1283)
T ss_pred HHHHHHHhHhhcccccC--ccccc--hhhhhcchHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87787766665544322 22332 4455566889999999999988888876654 66677788888999987
Q ss_pred HHHhhhhhhh
Q psy17363 465 KVLQQNVSKQ 474 (790)
Q Consensus 465 ~iL~~~lp~~ 474 (790)
|++.-.|+.
T Consensus 832 -ivskdfp~y 840 (1283)
T KOG1011|consen 832 -IVSKDFPKY 840 (1283)
T ss_pred -HHhhhhhhh
Confidence 667778875
No 31
>KOG3691|consensus
Probab=93.75 E-value=0.7 Score=55.59 Aligned_cols=162 Identities=15% Similarity=0.236 Sum_probs=124.2
Q ss_pred CchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhh
Q psy17363 54 SNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTA 133 (790)
Q Consensus 54 ~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~A 133 (790)
..+..-...+...-..-+..|+++|.++...-+.+.....++-..|..=.++|..+|.--..+...++--.++.++|=.=
T Consensus 46 e~re~ek~~Led~Yk~~~a~Lq~lv~~H~q~~t~~i~sy~~i~s~It~~rerI~~vK~~L~~~k~ll~~~rdeLqklw~~ 125 (982)
T KOG3691|consen 46 EPRETEKERLEDSYKEFGAALQELVHTHKQDFTTGISSYGEISSGITNCRERIHNVKNNLEACKELLNTRRDELQKLWAE 125 (982)
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 33444444444445555888899998887655556666667777777777777777777777777776555666666432
Q ss_pred hhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCCCChhHHHHHHHHHHHHHhHhHHHHHHH
Q psy17363 134 KRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQD 213 (790)
Q Consensus 134 KrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y~~i~~i~~L~~~v~~l~~~l~~qI~~d 213 (790)
----+.++.+|+.++-|-..+++++.++.+++|-.|..++..+..+++ .++..|.-+..|..+++.....|.+.+.++
T Consensus 126 ~~q~K~Vi~vL~eieEl~qvPqkie~~i~keqY~~Asdll~~~~~~ln--g~L~~VEgLs~l~~ele~~~~~L~~~L~eE 203 (982)
T KOG3691|consen 126 NSQYKKVIEVLKEIEELRQVPQKIETLIAKEQYLQASDLLTRAWELLN--GPLDGVEGLSDLRSELEGLLSHLEDILIEE 203 (982)
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 222357899999999999999999999999999999999999999996 468889999999999999998888888888
Q ss_pred HHhh
Q psy17363 214 LKNA 217 (790)
Q Consensus 214 f~~~ 217 (790)
+...
T Consensus 204 Lv~i 207 (982)
T KOG3691|consen 204 LVSI 207 (982)
T ss_pred HHHH
Confidence 8764
No 32
>KOG2115|consensus
Probab=93.31 E-value=0.97 Score=54.69 Aligned_cols=168 Identities=13% Similarity=0.208 Sum_probs=123.1
Q ss_pred ccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhh
Q psy17363 52 SLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLD 131 (790)
Q Consensus 52 SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD 131 (790)
.+..=..+-+++..+..-++--|.+.+-.-..+=-.+...+.+.++.+.+=.+++...+++..+...++-+--..|.++.
T Consensus 237 ~~~~~~~LQekLs~yLDvVE~~La~eIs~~SdsFfha~~~~~~Lq~~~~d~~~~vk~Lre~i~~vd~~~~~~s~~Ile~~ 316 (951)
T KOG2115|consen 237 RLEANSALQEKLSHYLDVVELHLAQEISKRSDSFFHAMTSLHNLQKELRDTMSEVKELRENIKEVDAENVRKSIKILELA 316 (951)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 33344445555555555555555444332221111133445555666665556666666666666666655568899999
Q ss_pred hhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCCCChhHHHHHHHHHHHHHhHhHHHHH
Q psy17363 132 TAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQIT 211 (790)
Q Consensus 132 ~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y~~i~~i~~L~~~v~~l~~~l~~qI~ 211 (790)
.+..|.+....-|+-+.-+..+-..++.++...+|.+|.++..-..+++.- ...-+++.++.|..++..+...+-.-+.
T Consensus 317 ~~r~n~~kL~~kL~~i~~V~~~q~~vq~ll~~~d~~~ALdlI~t~q~~L~g-~eL~gl~sfrhL~~ql~el~~tI~~m~t 395 (951)
T KOG2115|consen 317 LTRKNVEKLLQKLRLIATVHQAQSTVQLLLSTQDFVGALDLIKTIQELLKG-SELLGLHSFRHLRSQLLELYKTIDKMLT 395 (951)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHhh-hhhcCchhHHhhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999854 5677899999999999999999999999
Q ss_pred HHHHhhhcC
Q psy17363 212 QDLKNAFQN 220 (790)
Q Consensus 212 ~df~~~~~~ 220 (790)
.+|..+...
T Consensus 396 ~eF~~~~~~ 404 (951)
T KOG2115|consen 396 REFSTYSKS 404 (951)
T ss_pred HHHHHHHHH
Confidence 999987653
No 33
>KOG2069|consensus
Probab=90.78 E-value=3.4 Score=48.03 Aligned_cols=166 Identities=17% Similarity=0.235 Sum_probs=103.7
Q ss_pred hhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchh-------hhhhhhHHHHHHHHHHhhhhhh
Q psy17363 39 SVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGK-------KALEDSQKVIMQLFSQVRDIKS 111 (790)
Q Consensus 39 ~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~-------~~l~~~~~~i~~L~~~i~~Ik~ 111 (790)
...||.++-. ..+..+-.-.+.+..++..++.+++++.+.++..-.++- +.+..++.....|..+..+..+
T Consensus 21 ~~~~v~~l~~--~~~e~l~ke~~~La~e~~~i~~q~q~La~~ny~t~id~A~~~~~i~~~~~~~~~~~~~l~l~~~~L~s 98 (581)
T KOG2069|consen 21 MDAYVRELTT--KPLEELRKEKALLAEEAAKIDAQTQDLARDNYKTLIDTARNTDAIYQLFGRSRHDLKELSLQLPELTS 98 (581)
T ss_pred hHHHHHHHcC--CcHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHhhHHhhh
Confidence 4457777643 235555556667899999999999999998886433321 1122222222233332222222
Q ss_pred hhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCCCChhH
Q psy17363 112 KAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQ 191 (790)
Q Consensus 112 ~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y~~i~~ 191 (790)
.+.+...--.+| +++.++.....+. ..-+.-+...++-+..+++.+.|.++..+-..+..|.+++..+ |-
T Consensus 99 ~~~~f~~~~~~i-~e~~~~~~~~l~~------~~~l~ellelp~lM~~cir~~~~~ealel~a~~~RL~~~~~~~---pv 168 (581)
T KOG2069|consen 99 PCKRFQDFAEEI-SEHRRLNSLTLDK------HPQLLELLELPQLMDRCIRNGYYDEALELAAYASRLKQRFGTI---PV 168 (581)
T ss_pred HHHHHHHHHHHh-hHhHHHHHHHHhh------cchhHHHHhHHHHHHHHHHhhhhhhHHHHHHHHHHHHhhcccc---hH
Confidence 222222222222 3333333222222 2234455666666668888899999999999999999876666 99
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHh
Q psy17363 192 ILELRSQVAQIQNTLSEQITQDLKN 216 (790)
Q Consensus 192 i~~L~~~v~~l~~~l~~qI~~df~~ 216 (790)
|..+..++......+.+++...++.
T Consensus 169 i~~i~~~v~~tv~~ll~qL~~~l~~ 193 (581)
T KOG2069|consen 169 IQEIATEVEQTVQKLLEQLIQQLRT 193 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999988888888887774
No 34
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=88.55 E-value=0.55 Score=49.48 Aligned_cols=94 Identities=19% Similarity=0.344 Sum_probs=77.1
Q ss_pred CchhhhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhcccc-CC----------cchhhhhhhhHHHHHHHHHH
Q psy17363 37 FDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSG-VG----------QDGKKALEDSQKVIMQLFSQ 105 (790)
Q Consensus 37 fd~~~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~-~~----------~~~~~~l~~~~~~i~~L~~~ 105 (790)
-+|+.||+-+=+-|=.+.+|-..+.+.+.++..=|.||.++ +.|+. .. -+++-+|++|+.+|++|.+-
T Consensus 54 P~PEQYLTPLQQKEV~iRHLkakLkes~~~l~dRetEI~eL-ksQL~RMrEDWIEEECHRVEAQLALKEARkEIkQLkQv 132 (305)
T PF15290_consen 54 PNPEQYLTPLQQKEVCIRHLKAKLKESENRLHDRETEIDEL-KSQLARMREDWIEEECHRVEAQLALKEARKEIKQLKQV 132 (305)
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 37999999998888888888888888888888878888776 54542 11 12677899999999999999
Q ss_pred hhhhhhhhhhhHHHHHHHhhhhhhhh
Q psy17363 106 VRDIKSKAEKSEEMVREITRDIKLLD 131 (790)
Q Consensus 106 i~~Ik~~a~~sE~~V~~it~dIk~LD 131 (790)
|..+|..-..-..-|+..+-||.-=.
T Consensus 133 ieTmrssL~ekDkGiQKYFvDINiQN 158 (305)
T PF15290_consen 133 IETMRSSLAEKDKGIQKYFVDINIQN 158 (305)
T ss_pred HHHHHhhhchhhhhHHHHHhhhhhhH
Confidence 99999998888999999999997655
No 35
>PF08318 COG4: COG4 transport protein; InterPro: IPR013167 This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport [].
Probab=82.29 E-value=15 Score=40.71 Aligned_cols=261 Identities=13% Similarity=0.169 Sum_probs=148.2
Q ss_pred HHHHhHhHHHHHHHHHhhhcCCCCCCCcChhHHHHHHhhhhccChhhh--hhHHHHHHHhhccceeeeeccC--------
Q psy17363 200 AQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVK--KNILEWFISLQLSEYLVLFDES-------- 269 (790)
Q Consensus 200 ~~l~~~l~~qI~~df~~~~~~~~~~~~~~~~~l~daC~vvd~l~~~~k--~~li~~~~~~~L~ey~~~F~~~-------- 269 (790)
++++..|.+-+.+.|+++...+.. .++.-.|.+.-.||.+-- +...+|.|...-...+......
T Consensus 2 ~~a~~~L~~~f~~~F~~A~~~~D~------~~v~rffkLFPlig~~eeGL~~Y~~ylc~~i~~~~r~~~~~~~~~~~~~~ 75 (331)
T PF08318_consen 2 DEARESLCEIFLKKFDEAAQANDV------AQVTRFFKLFPLIGQEEEGLDLYSKYLCDIIAEQSRKLLDSATSGSSDSR 75 (331)
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHhhhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence 467788889999999998876542 456666666666664221 3334555544333222222211
Q ss_pred cchhhHhhhhhHHHHHHhhhccccccccccCCCcccccchhhHHHHHhhhhh----------------hhhh---h----
Q psy17363 270 EDSAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSE----------------LGKI---M---- 326 (790)
Q Consensus 270 ~ea~~Ld~i~rRy~Wf~r~L~~~e~~~~~iFP~~W~v~~~l~~~Fc~~Tr~~----------------L~~i---L---- 326 (790)
.+.-..+-+-+=|..+-+.++.++.-...+|-+.+ |...+.....+..++- +..+ .
T Consensus 76 ~~~~~~~~lt~LFe~ia~ii~~h~~lI~~~yG~~~-~~~vi~~Lq~E~D~q~~~Ild~f~~~R~l~~~~~~i~~~~~~~~ 154 (331)
T PF08318_consen 76 SPVFYADALTKLFEHIATIIEQHQPLIEKYYGPGY-MVYVIEKLQKECDLQAGIILDTFMDERRLDRKLQDIQSYNFSFL 154 (331)
T ss_pred ccccHHHHHHHHHHHHHHHHHHccHHHHHHcCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHhhhhhhh
Confidence 11122334444477777888887776666666665 4444443333222211 1111 1
Q ss_pred hc------------------ccc-----chhH--HHHHHHHhccccHHHHHHhhccCccc-c-----ccccccccchhhh
Q psy17363 327 SK------------------RKF-----EIDV--KLLLYAIQKTSNFEQLLEKRFADDET-E-----GENKTKFDGIIGS 375 (790)
Q Consensus 327 ~~------------------~~~-----~idv--~lLl~alq~T~~FE~~l~krf~~~~~-~-----~~~~~~f~g~iS~ 375 (790)
.+ ... ++|. .=+...++.+--|.++|..|+..... + ..++..-.+..+.
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~d~reld~lL~Eis~i~~~w~lY~rFi~~k~~~~~~~~~~~~~~~~~~~~~s~~~~ 234 (331)
T PF08318_consen 155 VKNSGRSSSSSSRAASSSQSEDEGIDPRELDALLNEISLILQRWSLYCRFISRKWNEFSDPDPEKQLKLPPLISSSNLSR 234 (331)
T ss_pred ccccccccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccchhhcCcHHH
Confidence 00 000 1221 12556789999999999999743211 0 1122233556666
Q ss_pred hc-cchhhhhhhhhccchHHHHHHHhhhHHHHHhchhh-hhccCCCCCCcchhhHHHHhhhccccccccccCCchHHHHH
Q psy17363 376 CF-QNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINE-TCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVALAT 453 (790)
Q Consensus 376 ~F-epyL~~yv~~qdk~l~~~l~~~~~~~~~~~~~~~~-~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g~~L~~L~~ 453 (790)
.. +..++.|+..+.-.|..-+.+.++... .|..+ .+...++.+-+-.-|+|...|+++.++..-++-+.+..+..
T Consensus 235 k~~qell~~Y~~Le~~y~~~Sv~KAi~lde---~p~~~~~~~~~~~~~SS~vDDvffil~k~l~RalsTg~~~~v~a~in 311 (331)
T PF08318_consen 235 KVNQELLGYYIPLEEFYLRRSVEKAIQLDE---LPSLNSLLDSSSPPTSSVVDDVFFILRKVLRRALSTGSIDTVCAVIN 311 (331)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cccccccccCCCcchhhHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 66 888888888888777776666665421 11110 00013455555557999999999999998888777777777
Q ss_pred HHHHHHHHHH-HHHHhhh
Q psy17363 454 TFQQYLRHYA-HKVLQQN 470 (790)
Q Consensus 454 ~f~k~L~~Ya-~~iL~~~ 470 (790)
...++|...- ..+|+.+
T Consensus 312 ~~~~iL~~d~l~~~l~~k 329 (331)
T PF08318_consen 312 HLVRILQNDFLIGFLQRK 329 (331)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 7777776554 4455544
No 36
>KOG2033|consensus
Probab=80.96 E-value=40 Score=40.29 Aligned_cols=130 Identities=18% Similarity=0.217 Sum_probs=87.9
Q ss_pred hcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHH
Q psy17363 44 NSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREI 123 (790)
Q Consensus 44 n~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~i 123 (790)
..+|. ..+-+.|+.+..++++.+..=.+++++.|-+.|. |+-++-..|.. ++..|...-..|..+
T Consensus 11 d~LFe-thsvsEIr~ve~~ir~~iE~KrEELRqmVGeRYR-------DLleAADtI~h-------M~sla~~L~~~I~~t 75 (863)
T KOG2033|consen 11 DTLFE-THSVSEIREVEKKIRSVIEGKREELRQMVGERYR-------DLLEAADTIRH-------MCSLADKLASDIANT 75 (863)
T ss_pred HHHHH-hCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-------HHHHHHHHHHH-------HHHHHHHHHHHHHHH
Confidence 34566 4567888999999999888888899888765552 22233333333 666666666666666
Q ss_pred hhhhhhhh---hh------hhh--hhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCCCC
Q psy17363 124 TRDIKLLD---TA------KRN--LTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTD 188 (790)
Q Consensus 124 t~dIk~LD---~A------KrN--Lt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y~~ 188 (790)
...+++|. -| .+| ...-.-+.-+.+-|+..++.+=..++...+-+++.+|..++.|...+-+.-+
T Consensus 76 ~~ncrsL~a~svA~tp~raeqnp~~e~~Yg~aaqVKyLv~~PE~IWg~lD~s~fl~At~ly~~~~Hlq~~liqLds 151 (863)
T KOG2033|consen 76 RVNCRSLHANSVAKTPGRAEQNPAGEHLYGTAAQVKYLVSSPELIWGHLDSSEFLDATVLYCMVEHLQKQLIQLDS 151 (863)
T ss_pred hhhhhhcccccccCCcchhhcCchhhHHHHHHHHHHHHHhCHHHhhccccccchHHHHHHHHHHHHHHHHHhhcCC
Confidence 66666666 22 334 2223333447778888888888888889999999999888888764444444
No 37
>smart00762 Cog4 COG4 transport protein. This region is found in yeast oligomeric golgi complex component 4 which is involved in ER to Golgi and intra Golgi transport.
Probab=80.50 E-value=20 Score=39.69 Aligned_cols=120 Identities=10% Similarity=0.110 Sum_probs=79.1
Q ss_pred HHHHHhccccHHHHHHhhccCccc---------cc--cccccccchhhhhccchhhhhhhhhccchHHHHHHHhhhHHHH
Q psy17363 338 LLYAIQKTSNFEQLLEKRFADDET---------EG--ENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQV 406 (790)
Q Consensus 338 Ll~alq~T~~FE~~l~krf~~~~~---------~~--~~~~~f~g~iS~~FepyL~~yv~~qdk~l~~~l~~~~~~~~~~ 406 (790)
+...++..--|.++|..+...... .+ .+...-++.++......++.|+..+.-.|..-+.+.++..
T Consensus 185 is~i~~~~~lY~rFi~~k~~~~~~~~~~~~~~~~~~~~~~~~~~s~l~~kvqell~~Y~~le~~y~~~Sv~KAi~ld--- 261 (324)
T smart00762 185 ISQILSRWELYCRFISRKINEFTERSQDPEEEKQEIELPKLLRDSKFSTKIQELLGTYVPLETYYFRRSVEKAIKLD--- 261 (324)
T ss_pred HHHHHHhHHHHHHHHHHHHhhhcccccccccccccccccchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---
Confidence 455677888888888887742110 00 1111235566777777889999888888777666666431
Q ss_pred HhchhhhhccCCCCCCcchhhHHHHhhhccccccccccCCchHHHHHHHHHHH-HHHH
Q psy17363 407 LNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYL-RHYA 463 (790)
Q Consensus 407 ~~~~~~~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g~~L~~L~~~f~k~L-~~Ya 463 (790)
..|. +.+ .++.+-+=.-|+|...|+++.++...++-..+..+.....++| ..|.
T Consensus 262 e~~~-~~~--~~~~~SS~VDDvffil~k~l~RalsT~~~~~v~a~in~~~~~L~~d~~ 316 (324)
T smart00762 262 ELPS-DED--KDPLTSSMVDDVFYLLRKVLRRALSTGNIASLTAFINELASVLQNDYL 316 (324)
T ss_pred cCCc-ccC--CCCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHH
Confidence 1111 111 3445555557899999999999999888888888887777777 4555
No 38
>PF07426 Dynactin_p22: Dynactin subunit p22; InterPro: IPR009991 This family contains p22, the smallest subunit of dynactin, a complex that binds to cytoplasmic dynein and is a required activator for cytoplasmic dynein-mediated vesicular transport. Dynactin localises to the cleavage furrow and to the midbodies of dividing cells, suggesting that it may function in cytokinesis [].
Probab=79.96 E-value=15 Score=36.88 Aligned_cols=68 Identities=13% Similarity=0.228 Sum_probs=43.1
Q ss_pred hhhhhhhhhhhhhhh-hhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHH-hhccCCCChhH
Q psy17363 124 TRDIKLLDTAKRNLT-TAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVM-KHFQDSTDIPQ 191 (790)
Q Consensus 124 t~dIk~LD~AKrNLt-~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~-~~F~~y~~i~~ 191 (790)
..++...+.||..+. +...-++.-.-++.-+.+|+..+....++.++.+=..+..|. .|.+++.....
T Consensus 75 ~e~~~l~~~~K~~~ILa~e~~i~~~~~~Leki~~L~pvL~se~i~~vp~~~~kL~~L~~~~~~Q~e~~~~ 144 (174)
T PF07426_consen 75 IEEIQLPDSAKLQIILAEEDEIKSTAELLEKIKSLEPVLDSESIRNVPELCDKLQKLSQIHLEQQEESEE 144 (174)
T ss_pred hhhcccchHHHHHHHHHccHHHHHHHHHHHHHHHhhhhcCcHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666676643 334456777777777777777777777777777766666666 35566655433
No 39
>PF14923 CCDC142: Coiled-coil protein 142
Probab=79.41 E-value=9.6 Score=43.69 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=72.0
Q ss_pred cccccccccc---CccccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHHhhhhccc-cccccchhHHHH
Q psy17363 582 TNWSSVESVG---DQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCK-PLSTVGAEQLLL 657 (790)
Q Consensus 582 ~~W~~~e~vg---d~S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l~k~k-~is~~gaeQLll 657 (790)
.-|..--..+ ..|.||...++.+- .|+++..-.-++.+=--..--.+..++..-+++|++-| +||..||-||+.
T Consensus 260 ~~WR~~~~~~lP~~pS~Yv~~~v~~vl--~PVl~g~q~L~~~aq~~~l~~~l~a~~eAWLdhIl~~kIKFS~~GAlQL~~ 337 (450)
T PF14923_consen 260 RYWRRSLSPELPSAPSEYVEYVVETVL--EPVLQGVQGLPPEAQIPALSQALTAMLEAWLDHILMHKIKFSLQGALQLRQ 337 (450)
T ss_pred chhcccCCCCCCCCccHHHHHHHHHHH--HHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHccceeeHHHHHHHHH
Confidence 5687533223 36899988776662 23332211000111001334456667777789998664 799999999999
Q ss_pred HHHHHHHHhcc-CCCchhhhhhcCCccceeeeeccchhHHHHHHHHHhh
Q psy17363 658 DIHMLKTVLLD-LPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMAS 705 (790)
Q Consensus 658 D~~~Lk~~ll~-lp~~~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p 705 (790)
|...+...+.+ -..+.++...+.. -...|.+.|..+++|+--
T Consensus 338 DF~~Vr~wl~~e~~~Ls~e~rq~Ll------~l~v~r~~dgv~~lLlqq 380 (450)
T PF14923_consen 338 DFGYVRDWLESECSGLSPELRQTLL------SLEVFRRCDGVGLLLLQQ 380 (450)
T ss_pred HHHHHHHHHHhhhccCCHHHHHHHh------ccHHHHHHHHHHHHHhcC
Confidence 99999999987 4444443322111 255678899999988764
No 40
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=68.47 E-value=21 Score=39.52 Aligned_cols=93 Identities=18% Similarity=0.319 Sum_probs=64.7
Q ss_pred cccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhh
Q psy17363 51 QSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLL 130 (790)
Q Consensus 51 ~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~L 130 (790)
..+..++.+...+..+...|..++..+-....+.+.-....|+.++..+.++...|...+..-.+.+.-+..+...|..+
T Consensus 170 ~~~~~l~~~~~~l~~~~~~L~~e~~~Lk~~~~e~~~~D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~ 249 (325)
T PF08317_consen 170 KQLEQLDELLPKLRERKAELEEELENLKQLVEEIESCDQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEEL 249 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566777788888888888888877644444444445677888888888888888877777777777777777777777
Q ss_pred hhhhhhhhhhhhh
Q psy17363 131 DTAKRNLTTAITC 143 (790)
Q Consensus 131 D~AKrNLt~sit~ 143 (790)
..-|.-+..-|.-
T Consensus 250 ~~~k~~l~~eI~e 262 (325)
T PF08317_consen 250 EEQKQELLAEIAE 262 (325)
T ss_pred HHHHHHHHHHHHH
Confidence 7444444444333
No 41
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=68.15 E-value=25 Score=40.88 Aligned_cols=122 Identities=15% Similarity=0.223 Sum_probs=70.2
Q ss_pred Cchhhhhhc--ccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhh
Q psy17363 37 FDSVQYINS--LFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAE 114 (790)
Q Consensus 37 fd~~~~In~--lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~ 114 (790)
|++..+-++ .++....+++|++.+..+...+..+-..+..+|...-... .....+...-.+|..++- +
T Consensus 88 feAE~~~dkfrF~kA~~~i~~ie~~l~~iE~~i~~il~~l~~Lv~sEekN~----~~i~~~~ely~elr~~vl------~ 157 (570)
T COG4477 88 FEAEALADKFRFNKAKHEIDDIEQQLTLIEEDIEQILEDLNELVESEEKNS----EEIDHVLELYEELRRDVL------A 157 (570)
T ss_pred HHHHHhhhhhhhHHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH----HHHHHHHHHHHHHHHHHH------H
Confidence 445444444 3444667778888888888888888888877775332111 111222222222222211 1
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhhhhhhhh-hhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCC
Q psy17363 115 KSEEMVREITRDIKLLDTAKRNLTTAITCL-NHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDS 186 (790)
Q Consensus 115 ~sE~~V~~it~dIk~LD~AKrNLt~sit~L-krL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y 186 (790)
.+. + +-.++.-| ++|.-+-..+.|-..+...++|-+|...|..+.+.+..++.|
T Consensus 158 n~~-----------~-------~Ge~~~~lEk~Le~i~~~l~qf~~lt~~Gd~ieA~evl~~~ee~~~~L~~~ 212 (570)
T COG4477 158 NRH-----------Q-------YGEAAPELEKKLENIEEELSQFVELTSSGDYIEAREVLEEAEEHMIALRSI 212 (570)
T ss_pred hhh-----------h-------hhhhhHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHH
Confidence 111 1 11222222 566667777777788888999999999999998888443333
No 42
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=67.32 E-value=46 Score=39.74 Aligned_cols=122 Identities=19% Similarity=0.312 Sum_probs=69.4
Q ss_pred Cchhhhhhc--ccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhh
Q psy17363 37 FDSVQYINS--LFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAE 114 (790)
Q Consensus 37 fd~~~~In~--lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~ 114 (790)
|++.++++. ++.....+..+.+.+..+..++..+..+|..++... +.-+..|.+|..+...++....
T Consensus 85 ~~ae~~~~~~rf~ka~~~i~~~~~~l~~~e~~i~~i~~~l~~L~~~e-----------~~nr~~i~~l~~~y~~lrk~ll 153 (560)
T PF06160_consen 85 FEAEEYADKYRFKKAKQAIKEIEEQLDEIEEDIKEILDELDELLESE-----------EKNREEIEELKEKYRELRKELL 153 (560)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHH
Confidence 344444443 344445555555556666666666655555554422 2223444444444444444332
Q ss_pred hhHHHHHHHhhhhhhhhhhhhhhhhhhh-hhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCC
Q psy17363 115 KSEEMVREITRDIKLLDTAKRNLTTAIT-CLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDS 186 (790)
Q Consensus 115 ~sE~~V~~it~dIk~LD~AKrNLt~sit-~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y 186 (790)
.-.... ..++. +-++|.-+-..+++...++..++|-+|...|..+..-+..|+.+
T Consensus 154 ~~~~~~-----------------G~a~~~Le~~L~~ie~~F~~f~~lt~~GD~~~A~eil~~l~~~~~~l~~~ 209 (560)
T PF06160_consen 154 AHSFSY-----------------GPAIEELEKQLENIEEEFSEFEELTENGDYLEAREILEKLKEETDELEEI 209 (560)
T ss_pred Hhhhhh-----------------chhHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 222111 12222 23677788888889999999999999999888888777555444
No 43
>PRK11637 AmiB activator; Provisional
Probab=65.13 E-value=33 Score=39.35 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=8.8
Q ss_pred cccchhhhhccch
Q psy17363 368 KFDGIIGSCFQNY 380 (790)
Q Consensus 368 ~f~g~iS~~Fepy 380 (790)
|..|.|++-|.++
T Consensus 310 Pv~g~i~~~fg~~ 322 (428)
T PRK11637 310 PVRGPTLHRFGEQ 322 (428)
T ss_pred CCCCCccCCCCCC
Confidence 4467777777654
No 44
>KOG0994|consensus
Probab=63.69 E-value=1.6e+02 Score=37.64 Aligned_cols=88 Identities=16% Similarity=0.277 Sum_probs=46.7
Q ss_pred hhhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhcccc------CCcc--------------hhhhhhhhHHHHH
Q psy17363 41 QYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSG------VGQD--------------GKKALEDSQKVIM 100 (790)
Q Consensus 41 ~~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~------~~~~--------------~~~~l~~~~~~i~ 100 (790)
+.|++. -.||.++|.+++.++..+.....=..++.+.... ++.+ ++..++.+...+.
T Consensus 1518 ~~I~e~---v~sL~nVd~IL~~T~~di~ra~~L~s~A~~a~~~A~~v~~~ae~V~eaL~~Ad~Aq~~a~~ai~~a~~~~~ 1594 (1758)
T KOG0994|consen 1518 GEIQER---VASLPNVDAILSRTKGDIARAENLQSEAERARSRAEDVKGQAEDVVEALEEADVAQGEAQDAIQGADRDIR 1594 (1758)
T ss_pred HHHHHH---HHhcccHHHHHHhhhhhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 344444 3478999999888877766655444444332211 1111 2233333333444
Q ss_pred HHHHHhhhhhhhhhhhHHHHHHHhhhhhhhh
Q psy17363 101 QLFSQVRDIKSKAEKSEEMVREITRDIKLLD 131 (790)
Q Consensus 101 ~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD 131 (790)
...+.+.+|++..+.+|..+...+..+.+|+
T Consensus 1595 ~a~~~l~kv~~~t~~aE~~~~~a~q~~~eL~ 1625 (1758)
T KOG0994|consen 1595 LAQQLLAKVQEETAAAEKLATSATQQLGELE 1625 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555666666666666655555555
No 45
>KOG3691|consensus
Probab=62.68 E-value=16 Score=44.70 Aligned_cols=140 Identities=15% Similarity=0.224 Sum_probs=100.3
Q ss_pred CCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhh----ccccccccccCccccchhhhhhhhccccceecccccchhH
Q psy17363 546 LSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVK----TNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKY 621 (790)
Q Consensus 546 ~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k----~~W~~~e~vgd~S~Yv~~i~~~l~~~~~~i~~~L~~~~~y 621 (790)
+++..|+|-++.-.|+-+|--.+-.-|=..+....+ .-|+..+ .|+.-+-|..+.+.|+..-.-+.+.|. +.=
T Consensus 775 ~ee~~~~fq~la~~cLLlLhlEVRv~Cfh~l~~~s~~~n~~i~~~~~-s~e~D~~V~aL~k~l~~~e~klk~~L~--e~k 851 (982)
T KOG3691|consen 775 YEELADSFQRLAFDCLLLLHLEVRVQCFHYLNPLSKLRNTSIVNRDV-SGEPDPSVVALNKDLSTTEEKLKACLN--EWK 851 (982)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhccCCceeecccc-cCCCCHHHHHHHHHHHHHHHHHHhhcC--HHH
Confidence 344678888899999877766555555555554443 4566544 677788888888888877777777777 555
Q ss_pred HHHHHHhhhhchhHHHHhhhhccccccccchhHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeeccchhHHHHHHH
Q psy17363 622 FTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKL 701 (790)
Q Consensus 622 f~~fc~k~~~~~i~~f~~~l~k~k~is~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~E~iLKl 701 (790)
+++..+-+....---+++.-.+.+.+++.|..||+.-+..|-..|..+.. .+ .-.|.++-.+--+
T Consensus 852 ~~yIFeGL~hL~s~~LI~~a~~i~~ln~~~ikkMcRNv~~lQQ~Lsnit~-------------~r--evdld~ar~fy~l 916 (982)
T KOG3691|consen 852 RRYIFEGLGHLVSSILISGAQYIERLNEGGIKKMCRNVSALQQILSNITE-------------SR--EVDLDKARRFYEL 916 (982)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccc-------------cc--ccccHHHHHHHHH
Confidence 66667777666666667777788999999999999999999999987643 11 3455666666666
Q ss_pred HH
Q psy17363 702 VM 703 (790)
Q Consensus 702 l~ 703 (790)
+.
T Consensus 917 l~ 918 (982)
T KOG3691|consen 917 LQ 918 (982)
T ss_pred Hh
Confidence 65
No 46
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=61.33 E-value=94 Score=41.17 Aligned_cols=118 Identities=15% Similarity=0.150 Sum_probs=73.0
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHH---HHhh
Q psy17363 88 GKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTL---IEQR 164 (790)
Q Consensus 88 ~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l---~~~r 164 (790)
+...+...+..+..+...|..+.........-+..+...|..+..-++|+..-++.++....+-..-.+|..+ ....
T Consensus 968 ~~~qL~~~e~el~~~~~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~~~~~~ 1047 (1311)
T TIGR00606 968 KDDYLKQKETELNTVNAQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLKEMGQM 1047 (1311)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344677777777777778888888888888888999999999999999999888885444444333333333 3222
Q ss_pred hccccccchhhHHHHHhhccCCC-----ChhHHHHHHHHHHHHHhHhHH
Q psy17363 165 QYGEIVMPLQGVIEVMKHFQDST-----DIPQILELRSQVAQIQNTLSE 208 (790)
Q Consensus 165 ~Y~e~~~ll~~~~~L~~~F~~y~-----~i~~i~~L~~~v~~l~~~l~~ 208 (790)
++ ...-.....+........ -.-++..|-.++..++.+|.+
T Consensus 1048 ~~---~~~~~e~~~l~~~~~~l~~~~a~l~g~~k~le~qi~~l~~eL~e 1093 (1311)
T TIGR00606 1048 QV---LQMKQEHQKLEENIDLIKRNHVLALGRQKGYEKEIKHFKKELRE 1093 (1311)
T ss_pred cH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 22 122222222221111111 135667777777777777754
No 47
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=60.00 E-value=42 Score=36.96 Aligned_cols=78 Identities=15% Similarity=0.259 Sum_probs=48.4
Q ss_pred CchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhh
Q psy17363 54 SNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLD 131 (790)
Q Consensus 54 ~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD 131 (790)
..++.+...++.+...|..++..+-+.......-....+..+++.+.++...|...+.+.++-+.-++++..+|...-
T Consensus 168 ~~l~~~~~~l~~~~~~L~~e~~~L~~~~~e~~~~d~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~ 245 (312)
T smart00787 168 ELLNSIKPKLRDRKDALEEELRQLKQLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLT 245 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666666666777766665444433222234556677777777777777777776777766666666666555
No 48
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=58.15 E-value=26 Score=35.27 Aligned_cols=57 Identities=23% Similarity=0.380 Sum_probs=29.3
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh
Q psy17363 91 ALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHL 147 (790)
Q Consensus 91 ~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL 147 (790)
.+......+..+.+++.++.....+.+..+++......++...++++...++-++++
T Consensus 131 ~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 131 RLDSLDESIKELEKEIRELQKELQDSREEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444455555555554444455555555566666655555555554444443
No 49
>KOG3543|consensus
Probab=57.05 E-value=50 Score=38.88 Aligned_cols=97 Identities=18% Similarity=0.255 Sum_probs=61.3
Q ss_pred hHHHHHHhhhccccccccccCCCcccccchhhHHHHHhhhhhhhhhhhc-cccchhHHHHHHHHhccccHHHHHHhhccC
Q psy17363 280 KRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSK-RKFEIDVKLLLYAIQKTSNFEQLLEKRFAD 358 (790)
Q Consensus 280 rRy~Wf~r~L~~~e~~~~~iFP~~W~v~~~l~~~Fc~~Tr~~L~~iL~~-~~~~idv~lLl~alq~T~~FE~~l~krf~~ 358 (790)
.-|||+-+.|.++-+.|+.+|. -|+...|.- .+.+-|.--|...|+--+.=+..
T Consensus 826 eafawwsdll~ehae~fwslfs------------------vdmdsalevqp~dswdsfplfqllndflr~d~~------- 880 (1218)
T KOG3543|consen 826 EAFAWWSDLLSEHAEIFWSLFS------------------VDMDSALEVQPHDSWDSFPLFQLLNDFLRSDSS------- 880 (1218)
T ss_pred hHHHhHHHHHHHHHHHHHHHHh------------------cccchhcccCCCCccccchHHHHHHHHHhhhhh-------
Confidence 4477888877777776666554 555555542 22333433333333321111111
Q ss_pred ccccccccccccchhhhhccchhhhhhhhhccchHHHHHHHhhhHHHH
Q psy17363 359 DETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQV 406 (790)
Q Consensus 359 ~~~~~~~~~~f~g~iS~~FepyL~~yv~~qdk~l~~~l~~~~~~~~~~ 406 (790)
.....|+..+...|.|..-.||+..+..+..-+.+-....+|+
T Consensus 881 -----lcngkfhkhlq~~f~plvvryvdlmessiaqsihrgfe~e~we 923 (1218)
T KOG3543|consen 881 -----LCNGKFHKHLQQQFQPLVVRYVDLMESSIAQSIHRGFEKEKWE 923 (1218)
T ss_pred -----cccchhHHHHHHHhhhHHHHHHHHHHHHHHHHHhccchhhccc
Confidence 1223688899999999999999999999888887777666664
No 50
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=56.44 E-value=17 Score=38.24 Aligned_cols=63 Identities=17% Similarity=0.354 Sum_probs=55.2
Q ss_pred hhhhhhhhHHHHHHHHHHhhh-hhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHH
Q psy17363 88 GKKALEDSQKVIMQLFSQVRD-IKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHML 150 (790)
Q Consensus 88 ~~~~l~~~~~~i~~L~~~i~~-Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL 150 (790)
|...++.....|..|-++|.. ++..+...|.--+++|..++.|+.....|...|--|+.++++
T Consensus 165 G~~~l~~~~~~m~~l~~~ie~~~~~q~~~le~~a~~lC~~l~~L~~~E~~L~~~IP~L~~y~l~ 228 (229)
T PF11101_consen 165 GDQNLQAFEQRMEGLQQQIEQEMEAQAQELEQKAQALCDSLQQLDQQEQQLQQRIPELKPYQLF 228 (229)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCc
Confidence 446788888999999999986 888999999999999999999999999999998888877654
No 51
>PRK11637 AmiB activator; Provisional
Probab=53.32 E-value=1.5e+02 Score=33.94 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=9.6
Q ss_pred hhHHHHHhhhchhhhHHHHHH
Q psy17363 56 IDDVIMKMESNIKEMDEEIET 76 (790)
Q Consensus 56 ld~l~~~l~~~~~~Ld~ei~~ 76 (790)
+.+-+..+++++..++++|..
T Consensus 45 ~~~~l~~l~~qi~~~~~~i~~ 65 (428)
T PRK11637 45 NRDQLKSIQQDIAAKEKSVRQ 65 (428)
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444443
No 52
>cd07638 BAR_ACAP2 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP2 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 2), also called centaurin beta-2, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP2 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=52.25 E-value=74 Score=32.74 Aligned_cols=159 Identities=12% Similarity=0.209 Sum_probs=80.3
Q ss_pred HHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhh----hHHHHhhhhhHHHHHhh-hccccccch
Q psy17363 99 IMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHL----HMLVTGVHSLRTLIEQR-QYGEIVMPL 173 (790)
Q Consensus 99 i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL----~mL~~~v~~L~~l~~~r-~Y~e~~~ll 173 (790)
|.++-+.+.++..+..+.-..++.++..-+.+..|-+++..++.-+.+. .++...+.+....+++= +|.++. +
T Consensus 4 i~~~E~d~~~Le~~l~Kl~K~~~~~~dag~~~~~a~~~F~~~l~d~~~~~~~De~i~~~l~kF~~~l~ei~~~~~~L--~ 81 (200)
T cd07638 4 LEDVEGDVAELELKLDKLVKLCIGMIDAGKAFCQANKQFMNGIRDLAQYSSKDAVIETSLTKFSDTLQEMINYHTIL--F 81 (200)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHH--H
Confidence 4444455555666666777777777777788888888777776666321 12222222222222111 121110 1
Q ss_pred -hhHHHHHhhccCCC--ChhHHHHHHHHHHHHHhHhHHHHHHHHHhhhcCCCCCCCcChhHHHHHHhhhhccChhhhhhH
Q psy17363 174 -QGVIEVMKHFQDST--DIPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNI 250 (790)
Q Consensus 174 -~~~~~L~~~F~~y~--~i~~i~~L~~~v~~l~~~l~~qI~~df~~~~~~~~~~~~~~~~~l~daC~vvd~l~~~~k~~l 250 (790)
++-..+...+..|+ ++..+.+.-+++++. .+++..++......+......+.+|-..++.-...+..--
T Consensus 82 ~q~~~~l~~~L~~F~k~dl~~vke~kk~FdK~--------s~~~~~aL~K~~~~~k~k~~e~eEa~~~l~~~r~~F~~~~ 153 (200)
T cd07638 82 DQAQRSIKAQLQTFVKEDLRKFKDAKKQFDKV--------SEEKENALVKNAQVQRNKQHEVEEATNILTATRKCFRHIA 153 (200)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--------hHHHHHHHHHhccCCcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 11111222222231 233444444444333 4455555543322211123457777666666566677777
Q ss_pred HHHHHHhhccceeeeec
Q psy17363 251 LEWFISLQLSEYLVLFD 267 (790)
Q Consensus 251 i~~~~~~~L~ey~~~F~ 267 (790)
+++++..+--.++.-|.
T Consensus 154 ldYv~~ln~vq~kKkfe 170 (200)
T cd07638 154 LDYVLQINVLQSKRRSE 170 (200)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88888887777776663
No 53
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=49.78 E-value=52 Score=31.32 Aligned_cols=72 Identities=15% Similarity=0.263 Sum_probs=32.4
Q ss_pred chhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhh
Q psy17363 55 NIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLL 130 (790)
Q Consensus 55 ~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~L 130 (790)
+|+.+-..+..-+++|.+.|..+-..+-+ ..+-.+.+++++.++..++..|+......+.+|..+=..|.++
T Consensus 51 ql~~vs~~l~~tKkhLsqRId~vd~klDe----~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~i 122 (126)
T PF07889_consen 51 QLEQVSESLSSTKKHLSQRIDRVDDKLDE----QKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEI 122 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444322110 1111234445555555555555555555555555554444443
No 54
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=49.13 E-value=55 Score=34.72 Aligned_cols=68 Identities=10% Similarity=0.209 Sum_probs=40.6
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhh
Q psy17363 89 KKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQ 165 (790)
Q Consensus 89 ~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~ 165 (790)
...++....++..|-..........+.-+..+.++.+.|..+...++.|+-. |...++.|+.++..+-
T Consensus 55 ~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~~~~~~l~p~---------m~~m~~~L~~~v~~d~ 122 (251)
T PF11932_consen 55 LAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIEETRQELVPL---------MEQMIDELEQFVELDL 122 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHhcCC
Confidence 3344555556666666555566666666666666666666666666666544 4455666666665553
No 55
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=49.07 E-value=1.5e+02 Score=34.02 Aligned_cols=39 Identities=10% Similarity=0.279 Sum_probs=19.3
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhh
Q psy17363 93 EDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLD 131 (790)
Q Consensus 93 ~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD 131 (790)
...+..++++-.+|..|...-.+|+..+.++-++|..++
T Consensus 62 ~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I~~~~ 100 (420)
T COG4942 62 AKLEKQLKSLETEIASLEAQLIETADDLKKLRKQIADLN 100 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH
Confidence 334444455555555555555555555555444444444
No 56
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=48.54 E-value=53 Score=39.28 Aligned_cols=43 Identities=19% Similarity=0.170 Sum_probs=33.4
Q ss_pred hhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCCC
Q psy17363 145 NHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDST 187 (790)
Q Consensus 145 krL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y~ 187 (790)
++|.-+-..+++-..+...++|-+|...|..+..-+..|+.+.
T Consensus 172 ~~l~~~e~~f~~f~~l~~~Gd~~~A~e~l~~l~~~~~~l~~~~ 214 (569)
T PRK04778 172 KQLENLEEEFSQFVELTESGDYVEAREILDQLEEELAALEQIM 214 (569)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667777778888888888999999888888887776665553
No 57
>PF03357 Snf7: Snf7; InterPro: IPR005024 This is a family of eukaryotic proteins which are variously described as either hypothetical protein, developmental protein or related to yeast SNF7. The family contains human CHMP1. CHMP1 (CHromatin Modifying Protein; CHarged Multivesicular body Protein), is encoded by an alternative open reading frame in the PRSM1 gene [] and is conserved in both complex and simple eukaryotes. CHMP1 contains a predicted bipartite nuclear localisation signal and distributes as distinct forms to the cytoplasm and the nuclear matrix in all cell lines tested. Human CHMP1 is strongly implicated in multivesicular body formation. A multivesicular body is a vesicle-filled endosome that targets proteins to the interior of lysosomes. Immunocytochemistry and biochemical fractionation localise CHMP1 to early endosomes and CHMP1 physically interacts with SKD1/VPS4, a highly conserved protein directly linked to multivesicular body sorting in yeast. Similar to the action of a mutant SKD1 protein, over expression of a fusion derivative of human CHMP1 dilates endosomal compartments and disrupts the normal distribution of several endosomal markers. Genetic studies in Saccharomyces cerevisiae (Baker's yeast) further support a conserved role of CHMP1 in vesicle trafficking. Deletion of CHM1, the budding yeast homologue of CHMP1, results in defective sorting of carboxypeptidases S and Y and produces abnormal, multi-lamellar prevacuolar compartments. This phenotype classifies CHM1 as a member of the class E vacuolar protein sorting genes []. ; GO: 0015031 protein transport; PDB: 2V6X_B 2W2U_D 2GD5_D 3FRT_B 3FRV_A 4ABM_D 3EAB_H 3HTU_D.
Probab=48.46 E-value=1.1e+02 Score=29.94 Aligned_cols=40 Identities=10% Similarity=0.218 Sum_probs=24.1
Q ss_pred ccccccchhhHHHHHhhccCCCChhHHHHHHHHHHHHHhH
Q psy17363 166 YGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNT 205 (790)
Q Consensus 166 Y~e~~~ll~~~~~L~~~F~~y~~i~~i~~L~~~v~~l~~~ 205 (790)
...++..|.....++..+.+.-+++.|..+.+.+......
T Consensus 80 ~~~v~~al~~~~~~Lk~~~~~i~~~~v~~~~d~~~e~~e~ 119 (171)
T PF03357_consen 80 NQQVVKALKQSSKALKKINKQINLDKVEKLMDDFQEEMED 119 (171)
T ss_dssp HHHHSSS----SHHHHHHHHSTTSCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH
Confidence 4555556666666665555566788888888888777543
No 58
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=46.48 E-value=49 Score=28.00 Aligned_cols=53 Identities=6% Similarity=0.192 Sum_probs=41.6
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhh
Q psy17363 89 KKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLH 148 (790)
Q Consensus 89 ~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~ 148 (790)
++.+...+..++.+..++..+....+..+..+.++|.+|+.+. ...+.+-|+-
T Consensus 5 ~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~-------~n~kW~~r~i 57 (71)
T PF10779_consen 5 KEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIK-------SNTKWIWRTI 57 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHH
Confidence 4456667777777778888888888888888999999999888 7777777743
No 59
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=43.35 E-value=4.5e+02 Score=34.61 Aligned_cols=51 Identities=16% Similarity=0.212 Sum_probs=29.2
Q ss_pred HHHHHhhhhccChhhhhhHHHHHHHhhccceeeeeccCcchhhHhhhhhHHHHHHhhh
Q psy17363 232 IAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQL 289 (790)
Q Consensus 232 l~daC~vvd~l~~~~k~~li~~~~~~~L~ey~~~F~~~~ea~~Ld~i~rRy~Wf~r~L 289 (790)
+..-|..+|.+.|.++..+++-+.+.--. . ++.-+.|++++||..=+-+.|
T Consensus 965 ~~~l~~~~~~~~~~~~~~l~e~~~~~~~~-i------~~f~~~l~~~~r~I~~~s~~l 1015 (1201)
T PF12128_consen 965 APDLQELLDVLIPQQQQALIEQGRNIGND-I------SNFYGVLEDFDRRIKSQSRRL 1015 (1201)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHH-H------HHHHHHHHHHhhHHHHHHHHH
Confidence 55677888888777777665554433111 0 122234667777766665555
No 60
>KOG3229|consensus
Probab=42.01 E-value=4.1e+02 Score=27.43 Aligned_cols=140 Identities=16% Similarity=0.231 Sum_probs=74.2
Q ss_pred hhhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHH--hhhhhhhhhhhHHH
Q psy17363 42 YINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQ--VRDIKSKAEKSEEM 119 (790)
Q Consensus 42 ~In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~--i~~Ik~~a~~sE~~ 119 (790)
+|+..+|.|+.=.........++++-+.||.+|+..-+++ +.++..|++...+ +...+-.|.+
T Consensus 2 ~l~~~~~~pdPKEq~r~wq~kiRke~r~ldrqir~iqree-----------~kv~~~iK~aAKknD~~t~~iLAKE---- 66 (227)
T KOG3229|consen 2 GLFGKTPGPDPKEQVREWQSKIRKEGRQLDRQIRDIQREE-----------EKVQKSIKQAAKKNDKDTCRILAKE---- 66 (227)
T ss_pred CccccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHhccHHHHHHHHHH----
Confidence 4566677676666777888889999999999999886655 2334444443322 2222222221
Q ss_pred HHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCCCChhHHHHHHHHH
Q psy17363 120 VREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQV 199 (790)
Q Consensus 120 V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y~~i~~i~~L~~~v 199 (790)
|-...+-+++|-.-|-+|....--|+ ++|..+.-.++....+..++.|++|+ -+|+++.--..+
T Consensus 67 iv~srk~v~Rly~sKAqlnSv~M~l~---------eqla~~r~~G~lqkStevMk~v~sLv-------k~Pel~~TMrel 130 (227)
T KOG3229|consen 67 IVQSRKAVKRLYESKAQLNSVSMQLK---------EQLATLRVAGSLQKSTEVMKAVNSLV-------KLPELAATMREL 130 (227)
T ss_pred HHHHHHHHHHHHHhHHHHhhHHHHHH---------HHHHHHHHHhhHHhHHHHHHHHHHHH-------hhHHHHHHHHHH
Confidence 11234666667655554433322222 33333333444444455555566655 347666543333
Q ss_pred HHHHhHhHHHHHHHH
Q psy17363 200 AQIQNTLSEQITQDL 214 (790)
Q Consensus 200 ~~l~~~l~~qI~~df 214 (790)
.+ .-++..|.++|
T Consensus 131 Sk--EmmKaGIIEEm 143 (227)
T KOG3229|consen 131 SK--EMMKAGIIEEM 143 (227)
T ss_pred HH--HHHHHHHHHHH
Confidence 32 13344455444
No 61
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=40.43 E-value=63 Score=32.99 Aligned_cols=75 Identities=15% Similarity=0.287 Sum_probs=46.8
Q ss_pred hHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHH-Hhhhhhhh---hhhhHHHHHHHhhhhhhhh
Q psy17363 57 DDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFS-QVRDIKSK---AEKSEEMVREITRDIKLLD 131 (790)
Q Consensus 57 d~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~-~i~~Ik~~---a~~sE~~V~~it~dIk~LD 131 (790)
|--+..|++++..||..|..+-++.............-++.+..+|.. +-..++.. .......+..+..||..+.
T Consensus 95 dwEevrLkrELa~Le~~l~~~~~~~~~~~~~~~~~~~lvk~e~EqLL~YK~~ql~~~~~~~~~~~~~l~~v~~Dl~~ie 173 (195)
T PF12761_consen 95 DWEEVRLKRELAELEEKLSKVEQAAESRRSDTDSKPALVKREFEQLLDYKERQLRELEEGRSKSGKNLKSVREDLDTIE 173 (195)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcchHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCHHHHHHHHHHHH
Confidence 335777999999999999988654433233444455566777777766 33334333 3445555667766666555
No 62
>KOG3758|consensus
Probab=39.78 E-value=7.5e+02 Score=29.79 Aligned_cols=116 Identities=15% Similarity=0.289 Sum_probs=71.3
Q ss_pred HHHHHhhhhccChhhhhhHHHHHH----HhhccceeeeeccCcchhhH-----------hhhhhHHHHHHhhhccccccc
Q psy17363 232 IAEALRVVSILDPKVKKNILEWFI----SLQLSEYLVLFDESEDSAWL-----------DKIDKRYAWFKKQLLHVEDKF 296 (790)
Q Consensus 232 l~daC~vvd~l~~~~k~~li~~~~----~~~L~ey~~~F~~~~ea~~L-----------d~i~rRy~Wf~r~L~~~e~~~ 296 (790)
++.|-..+-. .|..=+..|+-|. +-.+..|-.+|..+++.|.. --|..=+||+-+.+.+=++.+
T Consensus 227 l~kA~~~L~~-~p~lfk~~ide~~~aR~~~L~~~Fisaltrg~~~~~PrpIel~ahDPlRyIGDmLawlHq~ia~Ekelv 305 (655)
T KOG3758|consen 227 LRKAFVFLSS-RPVLFKYLIDEVGTARSQSLLRQFISALTRGGPGGMPRPIELHAHDPLRYIGDMLAWLHQAIANEKELV 305 (655)
T ss_pred HHHHHHHHhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCCccccCCChHHHHHHHHHHHHHHhhhHHHHH
Confidence 5555555544 3333333333333 23455666666444444433 345555799999999988889
Q ss_pred cccC-----------CCcccccchhh-----------HHHHHhhhhhhhhhhhccccchhHHHHHHHHhccccHHHHH
Q psy17363 297 GTLF-----------PPHWQLSEKIT-----------LEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLL 352 (790)
Q Consensus 297 ~~iF-----------P~~W~v~~~l~-----------~~Fc~~Tr~~L~~iL~~~~~~idv~lLl~alq~T~~FE~~l 352 (790)
..+| -..|++|..+- ..-|+=.|--+..++...+ + .++++-+-.++.|...+
T Consensus 306 ~aLfd~~~~d~q~n~~~~en~~~vl~~~dn~lld~i~~gvcrPlkvRvEqil~~e~---~-~Iilfki~nlL~FY~~~ 379 (655)
T KOG3758|consen 306 EALFDFKKEDLQDNISISENLPNVLGGIDNKLLDDILEGVCRPLKVRVEQILQAEK---N-AIILFKISNLLKFYRVT 379 (655)
T ss_pred HHHhcchhhhhccCCCchhHhHHHHhchhhhHHHHHHHHhcchhHHHHHHHHHcCc---C-ceeehhHHHHHHHHHHH
Confidence 9999 67899998766 4445555555566665332 2 25566677778887776
No 63
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=39.77 E-value=1.9e+02 Score=32.70 Aligned_cols=78 Identities=10% Similarity=0.176 Sum_probs=37.1
Q ss_pred HHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhh-hhhhhHHHHHHHhhhhhhhhhhhhh
Q psy17363 58 DVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKS-KAEKSEEMVREITRDIKLLDTAKRN 136 (790)
Q Consensus 58 ~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~-~a~~sE~~V~~it~dIk~LD~AKrN 136 (790)
+-++.+.+++..|+.-|-..-........++ .-...-..+..|..++.-+.. .-...+.-|+.+..++.+|...|+.
T Consensus 209 a~~a~LE~RL~~LE~~lG~~~~~~~~l~~~~--~~~~l~~~l~~L~~~lslL~~~~Ld~i~~rl~~L~~~~~~l~~~~~~ 286 (388)
T PF04912_consen 209 ARAADLEKRLARLESALGIDSDKMSSLDSDT--SSSPLLPALNELERQLSLLDPAKLDSIERRLKSLLSELEELAEKRKE 286 (388)
T ss_pred HHHHHHHHHHHHHHHHhCCCccccccccccC--CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3455566666666665544100000100000 022344556666666665533 2255555555666666666655555
Q ss_pred h
Q psy17363 137 L 137 (790)
Q Consensus 137 L 137 (790)
.
T Consensus 287 ~ 287 (388)
T PF04912_consen 287 A 287 (388)
T ss_pred c
Confidence 4
No 64
>PF04108 APG17: Autophagy protein Apg17 ; InterPro: IPR007240 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Autophagy protein 17 (Apg17) is required for activating Apg1 protein kinases. This entry also contains Autophagy protein 11 which is involved in cytoplasm to vacuole transport (Cvt) and pexophagy. ; GO: 0006914 autophagy
Probab=38.98 E-value=3.1e+02 Score=31.41 Aligned_cols=90 Identities=11% Similarity=0.246 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhH----HHHhhhhhHHHHHhhhccccc
Q psy17363 95 SQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHM----LVTGVHSLRTLIEQRQYGEIV 170 (790)
Q Consensus 95 ~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~m----L~~~v~~L~~l~~~r~Y~e~~ 170 (790)
...-+.+|.+.+..|......+...|.+....+.. +...+...+..|..... .+.....+...+...+ ..+.
T Consensus 253 l~~V~~el~~~~~~~~~~~~~~~k~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~l~~yl~~~~~~~~~~~~~~-~~i~ 328 (412)
T PF04108_consen 253 LPDVVKELQERLDEMENNEERTKKLLQSQRDHIRE---LYNALSEALEELRKFGERLPSYLAAFHDFEERWEEEK-ESIQ 328 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Confidence 33344455555555555555555555555444444 34444444455444444 3333333333332211 2455
Q ss_pred cchhhHHHHHhhccCCCC
Q psy17363 171 MPLQGVIEVMKHFQDSTD 188 (790)
Q Consensus 171 ~ll~~~~~L~~~F~~y~~ 188 (790)
..+..+.+|..|+..|.+
T Consensus 329 ~~~~~l~~L~~~Y~~F~~ 346 (412)
T PF04108_consen 329 AYIDELEQLCEFYEGFLS 346 (412)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 666666677666555543
No 65
>cd07637 BAR_ACAP3 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP3 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 3), also called centaurin beta-5, is presumed to be an Arf GTPase activating protein (GAP) based on its similarity to the Arf6-specific GAPs ACAP1 and ACAP2. The specific function of ACAP3 is still unknown. ACAP3 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=38.55 E-value=1.4e+02 Score=30.77 Aligned_cols=37 Identities=14% Similarity=0.267 Sum_probs=22.0
Q ss_pred hHHHHHHhhhhccChhhhhhHHHHHHHhhccceeeee
Q psy17363 230 KQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLF 266 (790)
Q Consensus 230 ~~l~daC~vvd~l~~~~k~~li~~~~~~~L~ey~~~F 266 (790)
..+.++-..+..--..+...-+++++..+--.++.-|
T Consensus 133 ~~l~Ea~~~L~~~Rk~f~~asLdyv~~ln~iq~kKk~ 169 (200)
T cd07637 133 HEVEEATSTLTITRKCFRHLALDYVLQINVLQAKKKF 169 (200)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566654444443455666667777777666665555
No 66
>PF12998 ING: Inhibitor of growth proteins N-terminal histone-binding; InterPro: IPR024610 Histones undergo numerous post-translational modifications, including acetylation and methylation, at residues which are then probable docking sites for various chromatin remodelling complexes. Inhibitor of growth proteins (INGs) specifically bind to residues that have been thus modified. INGs carry a well-characterised C-terminal PHD-type zinc-finger domain, binding with lysine 4-tri-methylated histone H3 (H3K4me3), as well as this N-terminal domain that binds unmodified H3 tails. Although these two regions can bind histones independently, together they increase the apparent association of the ING for the H3 tail. This entry represents the N-terminal histone binding domain found in inhibitor proteins.; PDB: 4AFL_A.
Probab=37.85 E-value=1.9e+02 Score=25.72 Aligned_cols=84 Identities=15% Similarity=0.221 Sum_probs=44.9
Q ss_pred cccCchhHHHHHhhhchhhhHHHHHHHHhcc-------ccCCcc---hhhhhhhhHHHHHHHHHHhhhh-hhhhhhhHHH
Q psy17363 51 QSLSNIDDVIMKMESNIKEMDEEIETVVRSQ-------SGVGQD---GKKALEDSQKVIMQLFSQVRDI-KSKAEKSEEM 119 (790)
Q Consensus 51 ~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q-------~~~~~~---~~~~l~~~~~~i~~L~~~i~~I-k~~a~~sE~~ 119 (790)
+++++||.-+...-..++.+|.+.+...++- ...... ....-...-..|.+.+.++... .+|-.-++++
T Consensus 8 d~~~~LP~el~r~l~~irelD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~~~~~~~~l~deKv~lA~~~ 87 (105)
T PF12998_consen 8 DSLENLPAELQRNLTLIRELDAKSQDLLEELDQQIQKFIKNHGSPSLSPEKRRELLKEIQEEYERALELSDEKVALAQQA 87 (105)
T ss_dssp TSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHChHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3577788888888888888888766655421 111111 0111222233333333333322 2333556666
Q ss_pred HHHHhhhhhhhhhhh
Q psy17363 120 VREITRDIKLLDTAK 134 (790)
Q Consensus 120 V~~it~dIk~LD~AK 134 (790)
..-+.+.|++||..-
T Consensus 88 ~d~v~~hi~rLD~dl 102 (105)
T PF12998_consen 88 YDLVDRHIRRLDQDL 102 (105)
T ss_dssp HHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHH
Confidence 777788888888543
No 67
>KOG0994|consensus
Probab=37.47 E-value=1.4e+02 Score=38.11 Aligned_cols=62 Identities=18% Similarity=0.275 Sum_probs=40.4
Q ss_pred hhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhh
Q psy17363 63 MESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITR 125 (790)
Q Consensus 63 l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~ 125 (790)
+.+....+++.|.+. +.-+.+..-+..+++++-..+.+|...|...++.-.+.|+.+.+|+.
T Consensus 1199 y~s~f~~me~kl~~i-r~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~ 1260 (1758)
T KOG0994|consen 1199 YASRFLDMEEKLEEI-RAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITN 1260 (1758)
T ss_pred hHhHHHHHHHHHHHH-HHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhh
Confidence 334444444444433 33333444455667777888888888888888888888888887765
No 68
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=36.57 E-value=3.3e+02 Score=29.04 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=5.7
Q ss_pred HHHHHHHHhhhhhhhh
Q psy17363 98 VIMQLFSQVRDIKSKA 113 (790)
Q Consensus 98 ~i~~L~~~i~~Ik~~a 113 (790)
++..|..+.......+
T Consensus 60 d~~~L~~k~~~~~~~~ 75 (264)
T PF06008_consen 60 DVENLQEKATKVSRKA 75 (264)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333333333333333
No 69
>PF14282 FlxA: FlxA-like protein
Probab=35.06 E-value=1.1e+02 Score=28.20 Aligned_cols=59 Identities=19% Similarity=0.322 Sum_probs=39.8
Q ss_pred CchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhh
Q psy17363 54 SNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSK 112 (790)
Q Consensus 54 ~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~ 112 (790)
.+.+..+..|.++|..|..+|..+-....-....-....+..+..|..|-..|..+...
T Consensus 15 ~~~~~~I~~L~~Qi~~Lq~ql~~l~~~~~~~~e~k~~q~q~Lq~QI~~LqaQI~qlq~q 73 (106)
T PF14282_consen 15 GSSDSQIEQLQKQIKQLQEQLQELSQDSDLDAEQKQQQIQLLQAQIQQLQAQIAQLQSQ 73 (106)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45699999999999999999998754322122223445566666777777777655443
No 70
>PF04518 Effector_1: Effector from type III secretion system; InterPro: IPR007606 This family contains several uncharacterised chlamydial proteins.
Probab=34.61 E-value=1.4e+02 Score=33.68 Aligned_cols=122 Identities=14% Similarity=0.257 Sum_probs=76.9
Q ss_pred HHHHhhcCchhHHHHHhhhCCCCCCCCCC--CCchhhhhhc------ccCcccccCchhHHHHHhhhchhhhHHHHHHHH
Q psy17363 7 YYNEILNYPKSVQDALKEIMPSTDVLDDH--DFDSVQYINS------LFPTEQSLSNIDDVIMKMESNIKEMDEEIETVV 78 (790)
Q Consensus 7 ~~~~~~~~~~~v~~~~~~~~~~~d~lds~--dfd~~~~In~------lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v 78 (790)
.+...+.||---..+++.++.-...+.+. -|+.-.||-+ .|| ...+.....+.+|+..+..+|...
T Consensus 146 ~L~~elnfsN~aa~~~N~ll~~i~~F~~a~vYynl~sYl~Q~~~g~~~F~-----g~~~~a~~~l~~E~~~~~~di~~~- 219 (379)
T PF04518_consen 146 PLGSELNFSNLAANYGNPLLEIINSFNNASVYYNLSSYLGQSKMGTDNFP-----GSYFMALAKLEKEREQIRRDIKSC- 219 (379)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHcCcCcceeeehHHHHhhhccchhccC-----CcHHHHHHHHHHHHHHHHHHHHHH-
Confidence 35566678877777777777766667733 4999999988 555 457788889999999999988775
Q ss_pred hccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhh-hhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhh
Q psy17363 79 RSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKA-EKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLH 148 (790)
Q Consensus 79 ~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a-~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~ 148 (790)
+.|+..++++..+|..-.+.+ ++-.+++..++.=...|+..-++|+.-...|..|.
T Consensus 220 --------------~~A~~~l~~~~~~V~~d~~lT~~Qk~~l~d~l~~Y~~~l~~i~~qL~~L~~~L~~L~ 276 (379)
T PF04518_consen 220 --------------ERAKAVLNKQLARVKADAKLTSEQKSELLDSLNNYKDNLNAISNQLSLLQSLLAPLS 276 (379)
T ss_pred --------------HHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccce
Confidence 456677777777776555444 22222333333333444444444444444444433
No 71
>PF14712 Snapin_Pallidin: Snapin/Pallidin
Probab=34.34 E-value=2.3e+02 Score=24.82 Aligned_cols=78 Identities=17% Similarity=0.268 Sum_probs=44.4
Q ss_pred HHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhh
Q psy17363 59 VIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLT 138 (790)
Q Consensus 59 l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt 138 (790)
+...+.-.+..++..+.++...| ......|..+..++.++...-... .++... .-+.+|...|+.++
T Consensus 8 l~~~l~P~l~~~~~~l~el~~sQ-----------~~L~~~i~~~~~~L~~~~~~~~~~-~~~~~~-~y~~KL~~ikkrm~ 74 (92)
T PF14712_consen 8 LLSLLEPDLDRLDQQLQELRQSQ-----------EELLQQIDRLNEKLKELNEVEQIN-EPFDLD-PYVKKLVNIKKRMS 74 (92)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhhhh-hHHHhh-HHHHHHHHHHHHHH
Confidence 34445556666777777766655 234455555555555444322211 122222 36777888888887
Q ss_pred hhhhhhhhhhH
Q psy17363 139 TAITCLNHLHM 149 (790)
Q Consensus 139 ~sit~LkrL~m 149 (790)
.....+++++.
T Consensus 75 ~l~~~l~~lk~ 85 (92)
T PF14712_consen 75 NLHERLQKLKK 85 (92)
T ss_pred HHHHHHHHHHH
Confidence 77777777764
No 72
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.69 E-value=2.1e+02 Score=30.73 Aligned_cols=29 Identities=0% Similarity=0.337 Sum_probs=22.6
Q ss_pred hhhhhHHHHHhhhccccccchhhHHHHHh
Q psy17363 153 GVHSLRTLIEQRQYGEIVMPLQGVIEVMK 181 (790)
Q Consensus 153 ~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~ 181 (790)
+-.-|..++..++++++.+-+.++..+..
T Consensus 116 ~t~Yidvil~SkSfsD~IsRvtAi~~iv~ 144 (265)
T COG3883 116 ATSYIDVILNSKSFSDLISRVTAISVIVD 144 (265)
T ss_pred hhHHHHHHHccCcHHHHHHHHHHHHHHHH
Confidence 33457788888888999888888888774
No 73
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=32.69 E-value=1.7e+02 Score=26.45 Aligned_cols=87 Identities=10% Similarity=0.196 Sum_probs=56.5
Q ss_pred HHHHhhhchhhhHHHHHHHHhccccCCcc--hhhhhhhhHHHHHHHHHHhhhhhhhhh--hhHHHHHHHhhhhhhhhhhh
Q psy17363 59 VIMKMESNIKEMDEEIETVVRSQSGVGQD--GKKALEDSQKVIMQLFSQVRDIKSKAE--KSEEMVREITRDIKLLDTAK 134 (790)
Q Consensus 59 l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~--~~~~l~~~~~~i~~L~~~i~~Ik~~a~--~sE~~V~~it~dIk~LD~AK 134 (790)
.+-.++.+...+=.+...+.+.....+.. -......+-.++..+..+|..|...-. .....+.++-++|+.....|
T Consensus 7 ~f~~~Qe~Ra~~Y~~~~~gf~~yl~~~~~~~y~~~~~~iT~~f~~~S~ei~~ie~~L~~~~~~~~la~~i~~lQ~~Ek~K 86 (97)
T PF14966_consen 7 RFFALQERRAQLYNRFEEGFKKYLRSGPEEAYRQLCHEITQEFSAISKEILAIEAELRDEHERPDLAELIRELQEQEKEK 86 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHHHH
Confidence 34446666777777777777665543332 233334455555666666666665543 44455668889999999999
Q ss_pred hhhhhhhhhhh
Q psy17363 135 RNLTTAITCLN 145 (790)
Q Consensus 135 rNLt~sit~Lk 145 (790)
-+||..+.+||
T Consensus 87 L~lT~~lQ~lk 97 (97)
T PF14966_consen 87 LELTAKLQVLK 97 (97)
T ss_pred HHHHHHHHhhC
Confidence 99999887764
No 74
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=32.25 E-value=61 Score=32.14 Aligned_cols=63 Identities=14% Similarity=0.371 Sum_probs=37.3
Q ss_pred cccccCchhHHHHHhhhchhhhHHHHHHHHhcccc-----CCcchhhhhhhhHHHHHHHHHHhhhhhh
Q psy17363 49 TEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSG-----VGQDGKKALEDSQKVIMQLFSQVRDIKS 111 (790)
Q Consensus 49 ~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~-----~~~~~~~~l~~~~~~i~~L~~~i~~Ik~ 111 (790)
+++.+..++.-+..++.+...+..+++.+-.+..+ +..+....+...+.++..|..++..++.
T Consensus 70 s~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 70 SPEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46678888888888888888888888877544322 1222333344444444444444444443
No 75
>PF04740 LXG: LXG domain of WXG superfamily; InterPro: IPR006829 This group of putative transposases is found in Gram-positive bacteria, mostly Bacillus members and is thought to be a Cytosolic protein. However, we have also found a Bacillus subtilis bacteriophage SPbetac2 homologue (O64023 from SWISSPROT), possibly arising as a result of horizontal transfer. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=32.17 E-value=1.9e+02 Score=29.31 Aligned_cols=33 Identities=27% Similarity=0.595 Sum_probs=21.9
Q ss_pred hhHHHHHhhhCCCCCCCCCCCCchh-hhhhc-ccC
Q psy17363 16 KSVQDALKEIMPSTDVLDDHDFDSV-QYINS-LFP 48 (790)
Q Consensus 16 ~~v~~~~~~~~~~~d~lds~dfd~~-~~In~-lfp 48 (790)
.++..+|..+....+.|-+.-||.+ .|+.+ +.|
T Consensus 27 ~~l~~ai~~~~~~~~~LkGka~dsiK~y~~~vh~p 61 (204)
T PF04740_consen 27 ESLQKAINQFISSESSLKGKAYDSIKNYFSEVHIP 61 (204)
T ss_pred HHHHHHHHHHHcCcchhhhHHHHHHHHHHHHHHHH
Confidence 4677777777766666887777766 45555 444
No 76
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=31.36 E-value=2.9e+02 Score=33.36 Aligned_cols=74 Identities=15% Similarity=0.310 Sum_probs=38.1
Q ss_pred hhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhh-HHHHh---hhhhHHHHHhh
Q psy17363 91 ALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLH-MLVTG---VHSLRTLIEQR 164 (790)
Q Consensus 91 ~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~-mL~~~---v~~L~~l~~~r 164 (790)
.+++.+..+++|..+|..+..-...-...++.+...+.+...-...+.......++.. ||-++ +.+|+.+++..
T Consensus 329 el~~l~~~l~~l~~~i~~~~~~~~~l~~~~~q~~~e~~~~~~~~~~le~~~~l~~k~~~lL~d~e~ni~kL~~~v~~s 406 (594)
T PF05667_consen 329 ELEELQEQLDELESQIEELEAEIKMLKSSLKQLEEELEEKEAENEELEEELKLKKKTVELLPDAEENIAKLQALVEAS 406 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3444444555555555544444444444445555555555555555556666666664 33333 45556666543
No 77
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=31.13 E-value=3e+02 Score=29.19 Aligned_cols=30 Identities=17% Similarity=0.249 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhHhHHHHHHHHHhhhcCC
Q psy17363 192 ILELRSQVAQIQNTLSEQITQDLKNAFQNP 221 (790)
Q Consensus 192 i~~L~~~v~~l~~~l~~qI~~df~~~~~~~ 221 (790)
...+......+...+-..+..-|+....++
T Consensus 158 ~~~~~~~~~~L~~~l~~ell~~yeri~~~~ 187 (239)
T COG1579 158 GQELSSKREELKEKLDPELLSEYERIRKNK 187 (239)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHhcC
Confidence 556778888888888888888888877655
No 78
>KOG0933|consensus
Probab=30.87 E-value=3.5e+02 Score=34.25 Aligned_cols=27 Identities=22% Similarity=0.369 Sum_probs=22.2
Q ss_pred chHHHHHHhhcCchhHHHHHhhhCCCC
Q psy17363 3 DTEEYYNEILNYPKSVQDALKEIMPST 29 (790)
Q Consensus 3 ~~~~~~~~~~~~~~~v~~~~~~~~~~~ 29 (790)
|..+..-+-|.|++++..|++=||+++
T Consensus 599 ~~v~~al~Li~yd~~l~~amefvFG~t 625 (1174)
T KOG0933|consen 599 DNVELALSLIGYDDELKKAMEFVFGST 625 (1174)
T ss_pred chHHHHHHHhcCCHHHHHHHHHHhCce
Confidence 445556677899999999999999983
No 79
>PF13949 ALIX_LYPXL_bnd: ALIX V-shaped domain binding to HIV ; PDB: 2XS1_A 2XS8_A 2R03_A 2R02_A 2OEX_B 2OEV_A 2OJQ_A 2R05_A.
Probab=30.35 E-value=7e+02 Score=26.64 Aligned_cols=19 Identities=16% Similarity=0.188 Sum_probs=11.0
Q ss_pred HhhcCchhHHHHHhhhCCC
Q psy17363 10 EILNYPKSVQDALKEIMPS 28 (790)
Q Consensus 10 ~~~~~~~~v~~~~~~~~~~ 28 (790)
.+..+|+.+..-+.+|-..
T Consensus 3 ~~~~lP~~l~~~~~~v~~~ 21 (296)
T PF13949_consen 3 GPEGLPPSLLEKSEEVRSE 21 (296)
T ss_dssp TT-S--HHHHHHHHHHHHT
T ss_pred CCCCCChHHHHHHHHHHhC
Confidence 3456788888888887643
No 80
>PF00015 MCPsignal: Methyl-accepting chemotaxis protein (MCP) signalling domain; InterPro: IPR004089 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the signalling domain found in several methyl-accepting chemotaxis proteins. This domain is thought to transduce the signal to CheA since it is highly conserved in very diverse MCPs.; GO: 0004871 signal transducer activity, 0007165 signal transduction, 0016020 membrane; PDB: 2CH7_A 3ZX6_B 1QU7_A 3G6B_B 3UR1_C 3G67_B.
Probab=29.74 E-value=1e+02 Score=30.98 Aligned_cols=109 Identities=17% Similarity=0.286 Sum_probs=0.0
Q ss_pred cccccCchhHHHHHhhhchhhhHHHHHHH---HhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhh
Q psy17363 49 TEQSLSNIDDVIMKMESNIKEMDEEIETV---VRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITR 125 (790)
Q Consensus 49 ~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~---v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~ 125 (790)
+.++...|...+..+.......-..+... +.+..+........|......+..+...+.+|...+.+....+.++..
T Consensus 91 t~~~~~~I~~~i~~i~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~i~~~~~~i~~~i~~i~~~~~~~~~~~~~i~~ 170 (213)
T PF00015_consen 91 TSESAKEISEIIEEIQEQISQVVESMEESREQIEEGSESVEETSESLEEIAESVEEISDSIEEISESAEEQSESIEQINE 170 (213)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhcccchhcchhhhhhhhhhhHHhhhhHHHHhhHHHHHHHHHHHHH
Q ss_pred hhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHh
Q psy17363 126 DIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQ 163 (790)
Q Consensus 126 dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~ 163 (790)
.+..++ ..+-.+....+.+.....+|......
T Consensus 171 ~i~~i~------~~~~~~~~~~~~~~~~~~~l~~~a~~ 202 (213)
T PF00015_consen 171 SIEEIS------EISEQISASSEEIAEAAEELSESAEE 202 (213)
T ss_dssp HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHH
No 81
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=28.13 E-value=3.1e+02 Score=33.90 Aligned_cols=107 Identities=14% Similarity=0.279 Sum_probs=49.1
Q ss_pred cCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhh----hHHHHHHHhhhhh
Q psy17363 53 LSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEK----SEEMVREITRDIK 128 (790)
Q Consensus 53 L~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~----sE~~V~~it~dIk 128 (790)
+...+....+++++...|..++..-+.+- .+.++..+..++.-..|.+++.+|.++=+. .+.+.+.......
T Consensus 553 i~~~~~ar~ei~~rv~~Lk~~~e~Ql~~L----~~l~e~~~~l~~~ae~LaeR~e~a~d~Qe~L~~R~~~vl~~l~~~~P 628 (717)
T PF10168_consen 553 IEKQDLAREEIQRRVKLLKQQKEQQLKEL----QELQEERKSLRESAEKLAERYEEAKDKQEKLMKRVDRVLQLLNSQLP 628 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 33344445555555555544444332221 112223334444445556666666555433 3333344433334
Q ss_pred hhhhhhhhhhhhhhhh-hhhhHHHHhhhhhHHHHHh
Q psy17363 129 LLDTAKRNLTTAITCL-NHLHMLVTGVHSLRTLIEQ 163 (790)
Q Consensus 129 ~LD~AKrNLt~sit~L-krL~mL~~~v~~L~~l~~~ 163 (790)
.|..|-|.+..=+..+ ..|+.|-..+++++...+.
T Consensus 629 ~LS~AEr~~~~EL~~~~~~l~~l~~si~~lk~k~~~ 664 (717)
T PF10168_consen 629 VLSEAEREFKKELERMKDQLQDLKASIEQLKKKLDY 664 (717)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555553332222 2345566666666665544
No 82
>PRK03918 chromosome segregation protein; Provisional
Probab=27.89 E-value=4.8e+02 Score=32.73 Aligned_cols=91 Identities=14% Similarity=0.326 Sum_probs=43.5
Q ss_pred hhcccCcccccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHH
Q psy17363 43 INSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVRE 122 (790)
Q Consensus 43 In~lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~ 122 (790)
|.++|. ++........+....+.++.++...- .....-.+-...+...+..+.++..++..++......+..+..
T Consensus 151 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~-~~l~~l~~i~~~l~~l~~~~~~l~~ei~~l~~e~~~l~~~~~~ 225 (880)
T PRK03918 151 VRQILG----LDDYENAYKNLGEVIKEIKRRIERLE-KFIKRTENIEELIKEKEKELEEVLREINEISSELPELREELEK 225 (880)
T ss_pred HHHHhC----CHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555 55555555555555555555444331 1111112223344555555555555555555555555555555
Q ss_pred Hhhhhhhhhhhhhhhh
Q psy17363 123 ITRDIKLLDTAKRNLT 138 (790)
Q Consensus 123 it~dIk~LD~AKrNLt 138 (790)
+-.....|..++..+.
T Consensus 226 ~~~~l~~l~~~~~~~~ 241 (880)
T PRK03918 226 LEKEVKELEELKEEIE 241 (880)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444444444444433
No 83
>cd07602 BAR_RhoGAP_OPHN1-like The Bin/Amphiphysin/Rvs (BAR) domain of Oligophrenin1-like Rho GTPase Activating Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. This subfamily is composed of Rho and Rac GTPase activating proteins (GAPs) with similarity to oligophrenin1 (OPHN1). Members contain an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, and a Rho GAP domain. Some members contain a C-terminal SH3 domain. Vertebrates harbor at least three Rho GAPs in this subfamily including OPHN1, GTPase Regulator Associated with Focal adhesion kinase (GRAF), GRAF2, and an uncharacterized protein called GAP10-like. OPHN1, GRAF and GRAF2 show GAP activity towards RhoA and Cdc42. In addition, OPHN1 is active towards Rac. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions. The BAR domains of OPHN1
Probab=27.46 E-value=6.7e+02 Score=25.99 Aligned_cols=37 Identities=22% Similarity=0.214 Sum_probs=23.8
Q ss_pred hHHHHHHhhhhccChhhhhhHHHHHHHhhccceeeee
Q psy17363 230 KQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLF 266 (790)
Q Consensus 230 ~~l~daC~vvd~l~~~~k~~li~~~~~~~L~ey~~~F 266 (790)
..+.+|=..++.--..+...-+++++..+--.++.-|
T Consensus 140 ~~~~ea~~~l~~~r~~f~~~~l~Yv~~l~~vq~rKkf 176 (207)
T cd07602 140 NQLQEADAQLDMERRNFHQASLEYVFKLQEVQERKKF 176 (207)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566666555553345666668888877776666666
No 84
>PF07138 DUF1386: Protein of unknown function (DUF1386); InterPro: IPR009815 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf11; it is a family of uncharacterised viral proteins.
Probab=27.33 E-value=4.5e+02 Score=28.68 Aligned_cols=156 Identities=15% Similarity=0.150 Sum_probs=89.0
Q ss_pred hhhccccccchhhHHHHHhhccCCCC-hhHHHHHHHHHHHHHhHhHHHHHHHHHhhhcCCCCCCCcChhHHHHHHhhhhc
Q psy17363 163 QRQYGEIVMPLQGVIEVMKHFQDSTD-IPQILELRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSI 241 (790)
Q Consensus 163 ~r~Y~e~~~ll~~~~~L~~~F~~y~~-i~~i~~L~~~v~~l~~~l~~qI~~df~~~~~~~~~~~~~~~~~l~daC~vvd~ 241 (790)
-++|||-..++.++.+=+++ .|-+ .+-|. +++... .+ +..|+ -...+||.++|+
T Consensus 20 h~~yGEsyhlyRIv~E~lt~--sYv~~~Sci~---Rdi~ta-----Rr--------l~~G~-------~~fd~A~~~lD~ 74 (324)
T PF07138_consen 20 HKRYGESYHLYRIVQEHLTN--SYVGGASCIE---RDIATA-----RR--------LNSGE-------LSFDDARQCLDA 74 (324)
T ss_pred HhhcchHHHHHHHHHHHHHH--hhcCCchHHH---HHHHHH-----HH--------HhcCC-------CcHHHHHHHhcc
Confidence 35799999999999988754 4422 22221 111111 11 11221 235567777776
Q ss_pred cChhhhhhHHHHHHHhh------------------------ccceeeeeccCcch-------hhHhhhhhHHHHHHhhhc
Q psy17363 242 LDPKVKKNILEWFISLQ------------------------LSEYLVLFDESEDS-------AWLDKIDKRYAWFKKQLL 290 (790)
Q Consensus 242 l~~~~k~~li~~~~~~~------------------------L~ey~~~F~~~~ea-------~~Ld~i~rRy~Wf~r~L~ 290 (790)
|+. .+.|..||.--. -+...++|..++.+ +.|.-+-.||.-|-+.-.
T Consensus 75 -~~s-~~~L~~Wy~~G~s~gl~~~v~~vL~~Id~~~pl~~R~~~g~~i~~ld~~~~i~~~~~~~Lq~~i~~F~~f~~~~~ 152 (324)
T PF07138_consen 75 -GDS-AERLSTWYSCGESSGLCADVQEVLAEIDAHVPLEKRVQRGGQIFALDNFLEIHENVTDLLQTIIGRFIHFVRCGK 152 (324)
T ss_pred -HHH-HHHHHHHHhcCCccccCHHHHHHHHHHhccCCHHHHhccccccccchhhhhhhHhHHHHHHHHHHHHHHHhhhhH
Confidence 332 344555554211 12455677655533 356667778887776533
Q ss_pred cccccccccCCCcccccchhhHHHHHhhhhhhhhhhhccccchhHHHHHHHHhccccHH
Q psy17363 291 HVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFE 349 (790)
Q Consensus 291 ~~e~~~~~iFP~~W~v~~~l~~~Fc~~Tr~~L~~iL~~~~~~idv~lLl~alq~T~~FE 349 (790)
- ...+.+|-|+=++--.-..+||-.|.-+- +....-+.--+.-|-+|+.+.+.+.
T Consensus 153 L--~~vA~vF~p~~~~~GWWY~KFCVlTYm~r--i~~~~vp~el~~RL~~aV~K~i~~~ 207 (324)
T PF07138_consen 153 L--EHVADVFNPTIDVVGWWYNKFCVLTYMHR--IICGSVPAELLTRLQNAVNKFIKPN 207 (324)
T ss_pred H--HHHHHhcCCCCCcccchhhhHHHHHHHHH--HHhCCCcHHHHHHHHHHHHHHhCcC
Confidence 2 34688998887777777889999987554 3322211112246777887777776
No 85
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.19 E-value=3.1e+02 Score=33.33 Aligned_cols=9 Identities=22% Similarity=0.199 Sum_probs=7.2
Q ss_pred CcchhhHhh
Q psy17363 269 SEDSAWLDK 277 (790)
Q Consensus 269 ~~ea~~Ld~ 277 (790)
|.+.|.||.
T Consensus 581 D~p~~~lD~ 589 (650)
T TIGR03185 581 DTPLGRLDS 589 (650)
T ss_pred cCCccccCh
Confidence 778888887
No 86
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=26.93 E-value=1.1e+03 Score=28.04 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=19.5
Q ss_pred HHHHHhhhhccChhhhhhHHHHHHHh
Q psy17363 232 IAEALRVVSILDPKVKKNILEWFISL 257 (790)
Q Consensus 232 l~daC~vvd~l~~~~k~~li~~~~~~ 257 (790)
|.-+-.++|-..|++-+++.+.|.+.
T Consensus 539 l~~~~~alE~vePG~~~ri~~~y~~~ 564 (569)
T PRK04778 539 LEIIATALEKVEPGVTKRIEDSYEKE 564 (569)
T ss_pred HHHHHHHHHhhCCcHHHHHHHHHHhc
Confidence 45566777888888888888887753
No 87
>PF09763 Sec3_C: Exocyst complex component Sec3; InterPro: IPR019160 The exocyst complex is composed of 8 subunits: Exoc1, Exoc2, Exoc3, Exoc4, Exoc5, Exoc6, Exoc7 and Exoc8. This entry represents the subunit Exoc1 (Sec3). Sec3 binds to the C-terminal cytoplasmic domain of GLYT1 (glycine transporter protein 1). Sec3 is the exocyst component that is closest to the plasma membrane docking site and it serves as a spatial landmark in the plasma membrane for incoming secretory vesicles. Sec3 is recruited to the sites of polarised membrane growth through its interaction with Rho1p, a small GTP-binding protein.
Probab=26.78 E-value=1.1e+03 Score=28.81 Aligned_cols=71 Identities=6% Similarity=0.153 Sum_probs=42.7
Q ss_pred CchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhh
Q psy17363 54 SNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLD 131 (790)
Q Consensus 54 ~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD 131 (790)
++.+++.+.|.+++..+|..--..+-+.... .......+.+...+++++....+.-...+..+..||....
T Consensus 1 ~dad~~~~~L~~eL~~le~~ni~~l~~s~~~-------v~~l~~~ld~a~~e~d~le~~l~~y~~~L~~~~~di~~IE 71 (701)
T PF09763_consen 1 DDADAFEERLSKELSALEAANIHSLLESEKQ-------VNSLMEYLDEALAECDELESWLSLYDVELNSVRDDIEYIE 71 (701)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3578889999999999988665444322111 2334444455555555555555555556666667775554
No 88
>cd07639 BAR_ACAP1 The Bin/Amphiphysin/Rvs (BAR) domain of ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. ACAP1 (ArfGAP with Coiled-coil, ANK repeat and PH domain containing protein 1), also called centaurin beta-1, is an Arf6-specific GTPase activating protein (GAP) which mediates Arf6 signaling. Arf6 is involved in the regulation of endocytosis, phagocytosis, cell adhesion and migration. ACAP1 also participates in the cargo sorting and recycling of the transferrin receptor and integrin beta1. It may also play a role in innate immune responses. ACAP1 contains an N-terminal BAR domain, followed by a Pleckstrin homology (PH) domain, an Arf GAP domain, and C-terminal ankyrin (ANK) repeats. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=26.65 E-value=5.3e+02 Score=26.59 Aligned_cols=48 Identities=13% Similarity=0.182 Sum_probs=26.4
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhh
Q psy17363 92 LEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNH 146 (790)
Q Consensus 92 l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~Lkr 146 (790)
+++.+.++.+|-.+|.+ .-..++.+..-.+.+..|.+++..++.-|..
T Consensus 4 i~~~E~~~~~le~~l~k-------l~K~~k~~~~agk~~~~a~~~F~~~L~~f~~ 51 (200)
T cd07639 4 IEEVEAEVSELETRLEK-------LVKLGSGMLEGGRHYCAASRAFVDGLCDLAH 51 (200)
T ss_pred HHHHHhHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444555554444443 3334445555556777777777666665544
No 89
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=26.59 E-value=2.9e+02 Score=24.54 Aligned_cols=73 Identities=12% Similarity=0.324 Sum_probs=50.6
Q ss_pred chhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhh
Q psy17363 55 NIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIK 128 (790)
Q Consensus 55 ~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk 128 (790)
.|++.+..+...+..|+.-+..-+... ....+-...++.+......|-+++......+..-|....++.+.+.
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~-~~~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~ 77 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERD-RKRDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLD 77 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 466677777777777777776654422 2223344566777778888999999999888888888877755433
No 90
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=26.59 E-value=2.4e+02 Score=26.94 Aligned_cols=21 Identities=10% Similarity=0.422 Sum_probs=10.2
Q ss_pred hHHHHHhhhchhhhHHHHHHH
Q psy17363 57 DDVIMKMESNIKEMDEEIETV 77 (790)
Q Consensus 57 d~l~~~l~~~~~~Ld~ei~~~ 77 (790)
.+..+.+.+++.++-+.|...
T Consensus 42 ~~A~~~v~kql~~vs~~l~~t 62 (126)
T PF07889_consen 42 SDAVASVSKQLEQVSESLSST 62 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555443
No 91
>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=25.63 E-value=4e+02 Score=25.30 Aligned_cols=69 Identities=16% Similarity=0.252 Sum_probs=38.6
Q ss_pred HHHHhhhhhhhhhhhhhhh---hhhhhhhhhhHHHHhhhhhHHHHHhhh-ccccccchhhHHHHHhhccCCCC
Q psy17363 120 VREITRDIKLLDTAKRNLT---TAITCLNHLHMLVTGVHSLRTLIEQRQ-YGEIVMPLQGVIEVMKHFQDSTD 188 (790)
Q Consensus 120 V~~it~dIk~LD~AKrNLt---~sit~LkrL~mL~~~v~~L~~l~~~r~-Y~e~~~ll~~~~~L~~~F~~y~~ 188 (790)
++++..++.+|...=-|+. .--.+.++++.|+..+.+|.++..... ......-..+=.+|++|.+..|+
T Consensus 5 l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~~~~~~~~~~~~~IP~evl~yID~GrN 77 (128)
T PF09748_consen 5 LEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQTNDPDSPLQDIQIPLEVLEYIDDGRN 77 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccccCCCCHHHHHHHhCCCC
Confidence 3333333344443333442 233445677788888888888887632 22222233355677777788887
No 92
>PF04136 Sec34: Sec34-like family ; InterPro: IPR007265 Sec34 and Sec35 form a sub-complex in a seven-protein complex that includes Dor1. This complex is thought to be important for tethering vesicles to the Golgi [].; GO: 0006886 intracellular protein transport, 0005801 cis-Golgi network, 0016020 membrane
Probab=25.63 E-value=5.8e+02 Score=25.07 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=10.9
Q ss_pred HHHHHHHHHhhhhhhhhhhhHHHH
Q psy17363 97 KVIMQLFSQVRDIKSKAEKSEEMV 120 (790)
Q Consensus 97 ~~i~~L~~~i~~Ik~~a~~sE~~V 120 (790)
.+-.+|+.+=..+...+++.++.+
T Consensus 49 ~~ce~Ll~eq~~L~~~ae~I~~~L 72 (157)
T PF04136_consen 49 EACEQLLEEQTRLEELAEEISEKL 72 (157)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333444444444444444444444
No 93
>PHA02562 46 endonuclease subunit; Provisional
Probab=25.60 E-value=3.1e+02 Score=32.40 Aligned_cols=26 Identities=15% Similarity=0.529 Sum_probs=14.5
Q ss_pred ccCchhHHHHHhhhchhhhHHHHHHH
Q psy17363 52 SLSNIDDVIMKMESNIKEMDEEIETV 77 (790)
Q Consensus 52 SL~~ld~l~~~l~~~~~~Ld~ei~~~ 77 (790)
-+..|.+.+..++.++..++..+.+.
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~~~ 325 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAIDEL 325 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555666666666666655543
No 94
>PF12022 DUF3510: Domain of unknown function (DUF3510); InterPro: IPR024603 The COG complex comprises eight proteins (COG1-8) and plays critical roles in Golgi structure and function []. This uncharacterised domain is found in the C-terminal of COG complex subunit 2 proteins.
Probab=25.21 E-value=73 Score=30.15 Aligned_cols=55 Identities=16% Similarity=0.160 Sum_probs=38.0
Q ss_pred ccccccccCccccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHHhh
Q psy17363 584 WSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQH 640 (790)
Q Consensus 584 W~~~e~vgd~S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~ 640 (790)
|.+-+.....|.||..|..-|+......+..+. ..--..++.++++.+..+|.+.
T Consensus 24 ~Tnk~~Pt~~S~yV~~il~Pl~~F~~~~~~~~~--~~~~~~~~~~v~~~v~~~y~~~ 78 (125)
T PF12022_consen 24 MTNKPVPTKPSPYVSSILRPLKSFLEEYSSYLS--PEIIEEWLQKVITEVTERYYEI 78 (125)
T ss_pred ccCCCCCCCccHHHHHHHHHHHHHHHHhhccCC--HHHHHHHHHHHHHHHHHHHHHH
Confidence 544445666899999999888887765555444 3444567777777777777665
No 95
>PRK04863 mukB cell division protein MukB; Provisional
Probab=24.29 E-value=4.4e+02 Score=35.51 Aligned_cols=34 Identities=6% Similarity=0.226 Sum_probs=26.2
Q ss_pred ccCcccccCchhHHHHHhhhchhhhHHHHHHHHh
Q psy17363 46 LFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVR 79 (790)
Q Consensus 46 lfp~e~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~ 79 (790)
+-.++..|..|.+++.++..++..|+.+...+.+
T Consensus 302 Le~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~k 335 (1486)
T PRK04863 302 LAAEQYRLVEMARELAELNEAESDLEQDYQAASD 335 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777788888888888888888888887754
No 96
>PF01540 Lipoprotein_7: Adhesin lipoprotein; InterPro: IPR002520 This family consists of the p50 and variable adherence-associated antigen (Vaa) adhesins from Mycoplasma hominis. M. hominis is a mycoplasma associated with human urogenital diseases, pneumonia, and septic arthritis []. An adhesin is a cell surface molecule that mediates adhesion to other cells or to the surrounding surface or substrate. The Vaa antigen is a 50kDa surface lipoprotein that has four tandem repetitive DNA sequences encoding a periodic peptide structure, and is highly immunogenic in the human host []. p50 is also a 50kDa lipoprotein, having three repeats A,B and C, that may be a tetramer of 191kDa in its native environment [].
Probab=24.16 E-value=6.3e+02 Score=27.12 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=25.3
Q ss_pred CCChhHHHHHHHHHHHHHhHhHHHHHHHHHhhhcCC
Q psy17363 186 STDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNP 221 (790)
Q Consensus 186 y~~i~~i~~L~~~v~~l~~~l~~qI~~df~~~~~~~ 221 (790)
|+.+..++.|...+....+.++..| .+++..|.-.
T Consensus 237 ~~gvEeLkKLAqEIss~Sn~lk~TI-seLEKkFkId 271 (353)
T PF01540_consen 237 IKGVEELKKLAQEISSHSNKLKATI-SELEKKFKID 271 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhccc
Confidence 4567777788888888888887764 5677777543
No 97
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=24.11 E-value=4.3e+02 Score=27.86 Aligned_cols=18 Identities=6% Similarity=0.346 Sum_probs=8.2
Q ss_pred HHHhhhchhhhHHHHHHH
Q psy17363 60 IMKMESNIKEMDEEIETV 77 (790)
Q Consensus 60 ~~~l~~~~~~Ld~ei~~~ 77 (790)
++.+..+...++.+|...
T Consensus 7 L~~i~e~~~~f~~~le~e 24 (247)
T PF06705_consen 7 LASINERFSGFESDLENE 24 (247)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344444444455544443
No 98
>PRK12808 flagellin; Provisional
Probab=23.68 E-value=2.9e+02 Score=32.10 Aligned_cols=75 Identities=9% Similarity=0.116 Sum_probs=48.7
Q ss_pred HHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhh-ccCCCChhHHHHHHHHH
Q psy17363 121 REITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKH-FQDSTDIPQILELRSQV 199 (790)
Q Consensus 121 ~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~-F~~y~~i~~i~~L~~~v 199 (790)
..+..+|+.|+++.||+...+..++- ...--.++.+.|+.+++|... =..=.+-.....+..++
T Consensus 50 ~rLrsqiagL~Qa~rNi~dgiS~LQT---------------AEgAL~eIsdILQRmRELAVQAANGT~S~~DRaAIq~EI 114 (476)
T PRK12808 50 TRMRARESGLGVAANNTQDGMSLIRT---------------ADSAMNSVSNILLRMRDIANQSANGTNTDKNQAALQKEF 114 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 47778889999999999988877652 223344555566777777632 22333445677777777
Q ss_pred HHHHhHhHHHH
Q psy17363 200 AQIQNTLSEQI 210 (790)
Q Consensus 200 ~~l~~~l~~qI 210 (790)
.++..++..-.
T Consensus 115 ~qLleeI~~IA 125 (476)
T PRK12808 115 AELQKQITYIA 125 (476)
T ss_pred HHHHHHHHHHH
Confidence 77766665544
No 99
>PF10368 YkyA: Putative cell-wall binding lipoprotein; InterPro: IPR019454 The YkyA family of proteins contain a lipoprotein signal and a hydrolase domain. They are similar to cell wall binding proteins and might also be recognisable by a host immune defence system. It is thus likely that they function in pathways important for pathogenicity []. ; PDB: 2AP3_A.
Probab=23.60 E-value=4.4e+02 Score=27.19 Aligned_cols=79 Identities=14% Similarity=0.243 Sum_probs=35.5
Q ss_pred hhhhhhhhhhhhhhhhhhhh--HHHHhhhhhHHHHHhh--hccccccchhhHHHHH-hhccCCC----ChhHHHHHHHHH
Q psy17363 129 LLDTAKRNLTTAITCLNHLH--MLVTGVHSLRTLIEQR--QYGEIVMPLQGVIEVM-KHFQDST----DIPQILELRSQV 199 (790)
Q Consensus 129 ~LD~AKrNLt~sit~LkrL~--mL~~~v~~L~~l~~~r--~Y~e~~~ll~~~~~L~-~~F~~y~----~i~~i~~L~~~v 199 (790)
.++.|+.-+..+...+.++. -+-..+++|...++.| .|......|..+..+= +.|...+ +..+|..-...|
T Consensus 90 ai~~a~~e~~~~~~~i~ki~d~~~k~qa~~l~~~~~~ry~~~~~l~~~Y~~~l~~ekely~~L~~~d~~~~~l~~ki~~i 169 (204)
T PF10368_consen 90 AIEKAKEEFKKAKKYIDKIEDEKLKKQAKELNEAMKKRYKSYDKLYKAYKKALELEKELYEMLKDKDTTQKQLDEKIKAI 169 (204)
T ss_dssp HHHHHHHHHTT----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHH
Confidence 35555555555555554444 3445566677777666 4666555555544433 2333232 344555545555
Q ss_pred HHHHhHhH
Q psy17363 200 AQIQNTLS 207 (790)
Q Consensus 200 ~~l~~~l~ 207 (790)
+.....+.
T Consensus 170 N~~y~~~~ 177 (204)
T PF10368_consen 170 NQSYKEVN 177 (204)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 100
>PRK03918 chromosome segregation protein; Provisional
Probab=22.85 E-value=2.7e+02 Score=35.00 Aligned_cols=39 Identities=18% Similarity=0.342 Sum_probs=17.9
Q ss_pred hhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhh
Q psy17363 92 LEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLL 130 (790)
Q Consensus 92 l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~L 130 (790)
++.++..+..+..++..+...-...+.-+..+..+|..+
T Consensus 661 ~~~l~~~~~~l~~~l~~l~~~~~~l~~~i~~l~~~i~~~ 699 (880)
T PRK03918 661 YEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKL 699 (880)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444
No 101
>PF14745 WASH-7_N: WASH complex subunit 7, N-terminal
Probab=22.75 E-value=1.4e+03 Score=27.45 Aligned_cols=161 Identities=16% Similarity=0.268 Sum_probs=101.8
Q ss_pred hhcccCccccc-CchhHHHHHhhhchhhhHHHHHHHHhccc----cCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhH
Q psy17363 43 INSLFPTEQSL-SNIDDVIMKMESNIKEMDEEIETVVRSQS----GVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSE 117 (790)
Q Consensus 43 In~lfp~e~SL-~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~----~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE 117 (790)
|-+++.+++.+ +++-...+.+-.|++.|..+..+..+--. +...+.....++++..|..+..-+.++.....+..
T Consensus 45 l~~li~t~n~~~~Kvl~~la~lc~Ei~~L~~ea~~~f~~~l~~~ge~~~~~~~~~ge~~~~i~~~l~~lq~l~~~~~R~~ 124 (567)
T PF14745_consen 45 LSDLIKTDNKLLNKVLAVLASLCNEIRKLKEEAETKFYPPLLFYGERIDEESLPEGEAQIMIGRMLPFLQDLSCFVNRCR 124 (567)
T ss_pred HHhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCCCcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555443 56667777777788888777775444211 11112222347889999999999999999999999
Q ss_pred HHHHHHhhhhhhhhhhhhhhh--------hhhhhhhhhhHHHHhhhhhHHHHHhh-hccccccchhhHHHHHhh-ccCCC
Q psy17363 118 EMVREITRDIKLLDTAKRNLT--------TAITCLNHLHMLVTGVHSLRTLIEQR-QYGEIVMPLQGVIEVMKH-FQDST 187 (790)
Q Consensus 118 ~~V~~it~dIk~LD~AKrNLt--------~sit~LkrL~mL~~~v~~L~~l~~~r-~Y~e~~~ll~~~~~L~~~-F~~y~ 187 (790)
..|.++.+.|..+-..++ .. .-.+++.+|--|...+-.+...+... .-++.-..|+.+..-..+ =..|.
T Consensus 125 ~Vv~n~v~QLaaly~~~~-~~~~~~~~~v~l~~vf~~lg~lL~vlvtlDeIi~~n~~L~~~w~~ykr~l~~v~~np~~f~ 203 (567)
T PF14745_consen 125 EVVKNLVQQLAALYSSQK-APKPIDFKGVHLQTVFDHLGELLRVLVTLDEIIEQNPSLRDHWSLYKRMLKSVRHNPSKFG 203 (567)
T ss_pred HHHHHHHHHHHHHHcccc-cCCccccCCccHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhcChhhcC
Confidence 999999999998887643 12 22356777778888888888888743 445555555544333211 11222
Q ss_pred -ChhHHHHHHHHHHHHHh
Q psy17363 188 -DIPQILELRSQVAQIQN 204 (790)
Q Consensus 188 -~i~~i~~L~~~v~~l~~ 204 (790)
+-+++..+-.-+..+..
T Consensus 204 ~~~~~l~~le~ll~~le~ 221 (567)
T PF14745_consen 204 VTEEKLRQLEKLLADLEG 221 (567)
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 24455555555555554
No 102
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=21.81 E-value=1.4e+03 Score=27.18 Aligned_cols=24 Identities=25% Similarity=0.314 Sum_probs=16.9
Q ss_pred HHHHHhhhhccChhhhhhHHHHHH
Q psy17363 232 IAEALRVVSILDPKVKKNILEWFI 255 (790)
Q Consensus 232 l~daC~vvd~l~~~~k~~li~~~~ 255 (790)
+..|..+++...|++-+++..-|.
T Consensus 539 ~eia~qaLE~vEpGv~~ki~~~y~ 562 (570)
T COG4477 539 FEIASQALEKVEPGVTKKIEESYE 562 (570)
T ss_pred HHHHHHHHhhhCCcHHHHHHHHHh
Confidence 455777788888888777665554
No 103
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=21.65 E-value=3e+02 Score=33.48 Aligned_cols=18 Identities=22% Similarity=0.499 Sum_probs=9.4
Q ss_pred HHHhhhchhhhHHHHHHH
Q psy17363 60 IMKMESNIKEMDEEIETV 77 (790)
Q Consensus 60 ~~~l~~~~~~Ld~ei~~~ 77 (790)
+..+..++..++.+|.++
T Consensus 393 ~~~~~~~~~~~e~el~~l 410 (650)
T TIGR03185 393 KSQLLKELRELEEELAEV 410 (650)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555544
No 104
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.63 E-value=7.8e+02 Score=32.77 Aligned_cols=81 Identities=10% Similarity=0.264 Sum_probs=40.6
Q ss_pred HHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhh-------hhhhhhhHHHHHHHhhhhhhhhh
Q psy17363 60 IMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDI-------KSKAEKSEEMVREITRDIKLLDT 132 (790)
Q Consensus 60 ~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~I-------k~~a~~sE~~V~~it~dIk~LD~ 132 (790)
+..+..++..+..+|..+..+....+.+ ..+.+++..+..+-.++..+ +......+.-|..+...|..+..
T Consensus 794 i~r~~~ei~~l~~qie~l~~~l~~~~~~--~s~~ele~ei~~~~~el~~l~~~~e~l~~e~e~~~~eI~~Lq~ki~el~~ 871 (1311)
T TIGR00606 794 MERFQMELKDVERKIAQQAAKLQGSDLD--RTVQQVNQEKQEKQHELDTVVSKIELNRKLIQDQQEQIQHLKSKTNELKS 871 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444666666666666665544333222 13344455555444444444 55555555555555444444454
Q ss_pred hhhhhhhhhh
Q psy17363 133 AKRNLTTAIT 142 (790)
Q Consensus 133 AKrNLt~sit 142 (790)
-+-.+...+.
T Consensus 872 ~klkl~~~l~ 881 (1311)
T TIGR00606 872 EKLQIGTNLQ 881 (1311)
T ss_pred HHHHHHHHHH
Confidence 4555555333
No 105
>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins.
Probab=21.09 E-value=3.8e+02 Score=23.39 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHh
Q psy17363 89 KKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQ 163 (790)
Q Consensus 89 ~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~ 163 (790)
.+.+.++...+..+..+++.|...+..+-..+.++..|+..-. +++..++.++.++..-+..
T Consensus 25 ~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv~~k~-------------~~v~~~~~~v~~~g~~v~~ 86 (90)
T PF06103_consen 25 KKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDVNEKL-------------EKVDPVFEAVADLGESVSE 86 (90)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HhHHHHHHHHHHHHHHHHH
No 106
>PRK08026 flagellin; Validated
Probab=20.08 E-value=3.9e+02 Score=31.72 Aligned_cols=75 Identities=19% Similarity=0.239 Sum_probs=47.7
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhh-ccCCCChhHHHHHHH
Q psy17363 119 MVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKH-FQDSTDIPQILELRS 197 (790)
Q Consensus 119 ~V~~it~dIk~LD~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~-F~~y~~i~~i~~L~~ 197 (790)
....++.+|+.|+++.||+...+.+|+.= +.--.++.+.|+.+++|... =..=-+-.....+..
T Consensus 50 ia~~l~sqi~~l~qa~rN~~dg~s~lqtA---------------E~aL~~i~d~LqRmrELaVqAaNGT~S~~DR~aiq~ 114 (529)
T PRK08026 50 IANRFTSNIKGLTQAARNANDGISVAQTT---------------EGALSEINNNLQRVRELTVQAATGTNSQSDLDSIQD 114 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHH
Confidence 44578899999999999998888776532 22233444556666666632 123334567777777
Q ss_pred HHHHHHhHhHH
Q psy17363 198 QVAQIQNTLSE 208 (790)
Q Consensus 198 ~v~~l~~~l~~ 208 (790)
++.++.+++..
T Consensus 115 Ei~qL~~eI~~ 125 (529)
T PRK08026 115 EIKSRLDEIDR 125 (529)
T ss_pred HHHHHHHHHHH
Confidence 77777655543
Done!