Query psy17363
Match_columns 790
No_of_seqs 153 out of 270
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 20:29:27 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17363.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17363hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ns4_A Vacuolar protein sortin 100.0 8.4E-34 2.9E-38 288.2 1.7 140 618-757 20-183 (271)
2 2fji_1 Exocyst complex compone 99.9 4E-27 1.4E-31 263.5 9.3 349 371-749 7-366 (399)
3 3fhn_A Protein transport prote 99.8 2.1E-17 7.1E-22 192.1 23.2 610 51-744 10-695 (706)
4 3swh_A MUNC13-1, protein UNC-1 98.1 7.9E-06 2.7E-10 88.6 9.7 292 374-717 8-336 (341)
5 2a2f_X Exocyst complex compone 97.6 7.3E-05 2.5E-09 80.5 8.0 175 515-706 144-320 (325)
6 3hr0_A COG4; conserved oligome 97.4 0.00019 6.5E-09 75.0 7.5 213 512-743 23-259 (263)
7 3n1e_A Vacuolar protein sortin 87.5 1.1 3.8E-05 41.9 6.9 121 545-674 9-131 (141)
8 2d2s_A Exocyst complex compone 78.3 16 0.00055 37.0 11.8 190 145-352 13-212 (235)
9 1deq_A Fibrinogen (alpha chain 61.7 33 0.0011 36.9 9.8 113 38-161 39-157 (390)
10 2jqq_A Conserved oligomeric go 42.7 52 0.0018 32.0 6.9 44 88-131 45-89 (204)
11 2olt_A Hypothetical protein; s 32.9 2.2E+02 0.0074 27.9 10.3 53 60-120 55-107 (227)
12 3mmi_A Myosin-4; globular tail 32.8 2.7E+02 0.0094 30.1 11.5 156 561-734 153-309 (386)
13 3mq9_A Bone marrow stromal ant 32.6 3.5E+02 0.012 29.5 13.0 62 70-142 357-418 (471)
14 2d2s_A Exocyst complex compone 30.9 1.7E+02 0.0056 29.4 9.0 50 195-266 138-187 (235)
15 4afl_A P29ING4, inhibitor of g 30.8 1.2E+02 0.004 26.3 6.9 80 51-131 11-100 (104)
16 1deq_A Fibrinogen (alpha chain 30.2 49 0.0017 35.6 4.9 18 114-131 137-154 (390)
17 3ghg_A Fibrinogen alpha chain; 28.9 25 0.00086 39.3 2.6 41 37-77 35-76 (562)
18 2dfs_A Myosin-5A; myosin-V, in 25.3 3.9E+02 0.013 33.0 12.5 28 53-80 916-943 (1080)
19 2b1e_A Exocyst complex compone 23.5 1.2E+02 0.004 34.7 7.0 88 133-220 1-96 (564)
20 3na7_A HP0958; flagellar bioge 21.5 5.2E+02 0.018 25.8 10.9 26 53-78 13-38 (256)
21 3o0z_A RHO-associated protein 20.4 1.2E+02 0.0041 28.9 5.2 45 93-137 93-137 (168)
No 1
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex component, helical bundle, membrane tethering C membrane traffic, VPS51; HET: MSE; 2.90A {Saccharomyces cerevisiae}
Probab=99.97 E-value=8.4e-34 Score=288.23 Aligned_cols=140 Identities=20% Similarity=0.283 Sum_probs=128.1
Q ss_pred chhHHHHHHHhhhhchhHHHHhhh-hccccc---------------ccc-chhHHHHHHHHHHHHhccCCCchh-hhhhc
Q psy17363 618 SRKYFTQFCVKFANSFIPKLVQHV-FKCKPL---------------STV-GAEQLLLDIHMLKTVLLDLPSIGS-QVVRK 679 (790)
Q Consensus 618 ~~~yf~~fc~k~~~~~i~~f~~~l-~k~k~i---------------s~~-gaeQLllD~~~Lk~~ll~lp~~~~-~~~~~ 679 (790)
+..||++||||++++|+++|+++| ++|||+ +++ ||||||||+|+||++|++||+.++ +++++
T Consensus 20 R~~Y~rnFcDK~ve~~~~~Fi~~Ii~~ckPi~pf~~~~~~rk~~~~s~v~gaEQLLLD~~sLK~~Ll~LP~~~~~~~~~~ 99 (271)
T 3ns4_A 20 RDVYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELLKEIFHTLPESVSNDSDLR 99 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCSSSSCSCSSCHHHHHHHHHHHHHHHHHHHHHHHHGGGGGCSCCCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHheeCcccccccccccccccccchhHHHHHHHHHHHHHHHHHcccccccccccC
Confidence 479999999999999999999999 789999 888 999999999999999999999876 33566
Q ss_pred CC---ccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhhhCCC-CchhHHHHHhhccCCc--cccccccccccCCCC
Q psy17363 680 AP---ASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKLLPE-SDMTEFQRILDMKGLK--TNEKNNLINLFRPKN 753 (790)
Q Consensus 680 ~p---~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~l~~d-~s~~~f~kIL~lKg~~--r~eq~~lle~f~~~~ 753 (790)
+| ++|+|+|+++|+++|++||+||+|.+||++||++|..|+|| .+..+|+|||+|||++ +++|++|++.|+.+.
T Consensus 100 ~~ts~~sytK~V~~~~~kle~lLKvLm~P~dppe~~ve~Y~~Li~dn~s~~nF~KIL~LKGv~wdl~~wk~~~~~f~l~~ 179 (271)
T 3ns4_A 100 ENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSKLTNNNPDSAVWSFVLALKGIPWDLALWKKMWSAYNLET 179 (271)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCCCSCHHHHHHHHHHHTTSCCCHHHHHHHHHHHTCCSCHHHHHHHHHHHHHHC
T ss_pred CCcccchhhhHHhhhHHHHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCccHHHHHHHHHHHhhcc
Confidence 77 57999999999999999999999999999999999999999 9999999999999995 889999999999876
Q ss_pred CCCC
Q psy17363 754 PSNT 757 (790)
Q Consensus 754 ~~~~ 757 (790)
....
T Consensus 180 ~~~~ 183 (271)
T 3ns4_A 180 DDTD 183 (271)
T ss_dssp ----
T ss_pred cccc
Confidence 5544
No 2
>2fji_1 Exocyst complex component SEC6; exocytosis, tandem helical bundles, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=4e-27 Score=263.45 Aligned_cols=349 Identities=12% Similarity=0.153 Sum_probs=280.6
Q ss_pred chhhhhccchhhhhhhhhccchHHHHHHHhhhHHHHHhchhhhhccCCCCCCcchhhHHHHhhhccccccccccCCchHH
Q psy17363 371 GIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVA 450 (790)
Q Consensus 371 g~iS~~FepyL~~yv~~qdk~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g~~L~~ 450 (790)
+.+....+.|++..+...++||.+++.....+....+. +|+.|. +|.++.|++.|+|+++++++.+|+..++++.+..
T Consensus 7 ~~~~~L~~~Y~~~i~~~~~eW~~nil~~E~~~w~~r~~-~P~~d~-~g~~~t~~~~dvfqml~eql~~a~~~~~~~l~~~ 84 (399)
T 2fji_1 7 KEKETLFKDYLNLIVVKMTEWIGNLEKAEFDVFLERST-PPHSDS-DGLLFLDGTKTCFQMFTQQVEVAAGTNQAKILVG 84 (399)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCS-CCEECT-TSCEECHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCcCC-CCCeeCCchHHHHHHHHHHHHHHHhCCCcccHHH
Confidence 46677788899988999999988888877766542222 334431 6899999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhccccccchhc-ccc-ccccccccccccccCCcccccceeEeecchhHHHHhHHHH
Q psy17363 451 LATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLAS-VSN-ITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQQL 528 (790)
Q Consensus 451 L~~~f~k~L~~Ya~~iL~~~lp~~~~~~~~~~~s~-~~~-~~~~~~~~ke~~~~~~~~~~~~ic~ilnTAdYc~~t~~qL 528 (790)
+...+.+.|..|+..+ +..+....... .+. .|. .++ .++..++. ....-++++|+++|++..|.+.+.+|
T Consensus 85 v~~~~~~~L~~f~~~~-~~~l~~~~~~~----~~~~~~~~~~~-~~~~~~~~--~~~~~~e~liA~~Nn~~~~~e~~~~l 156 (399)
T 2fji_1 85 VVERFSDLLTKRQKNW-ISKISEEIKKQ----INYNHKYDIDP-ESITPEDE--CPGGLVEYLIAVSNDQMKAADYAVAI 156 (399)
T ss_dssp HHHHHHHHHHHHHHHH-HHHHHHHHHHH----HHHHHTTTTGG-GSCCTTTC--CCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHH----hcccccccccc-cccCcccc--ccccHHHhhhhhhccHHHHHHHHHHH
Confidence 7777777777776654 22221110000 000 000 000 00001000 11234678999999999999999999
Q ss_pred HHHHhhhcCCcccccc--cCCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhhccccccccccCccccchhhhhhhhc
Q psy17363 529 EQKLKEKVDPNLANKI--DLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQ 606 (790)
Q Consensus 529 e~kl~e~i~~~~~~~i--~~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k~~W~~~e~vgd~S~Yv~~i~~~l~~ 606 (790)
+.++.+.+++.|.+++ +|+...++|.++++.|++.|+..++.+++|.+..++...|+. | ++|..|+.++.+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~l~~~~~~f~~l~~~~~~~L~~~if~dl~p~~~~lft~~W~~----~---~~v~~i~~ti~d 229 (399)
T 2fji_1 157 SSKYGKLVSKVYEKQITNHLEGTLDGFAEVAQCSSLGLITLMFDDLRKPYQEIFSKTWYM----G---SQAQQIADTLDE 229 (399)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTHHHHTTTTSGGGTT----C---CHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhcC----C---cHHHHHHHHHHH
Confidence 9999999999998888 999999999999999999999999999999999999999975 2 299999999999
Q ss_pred cccceecccccchhHHHHHHHhhhhchhHHHHhhhhcccccc---ccchhHHHHHHHHHHHHhccCCCchhhhhhcCCcc
Q psy17363 607 SVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLS---TVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPAS 683 (790)
Q Consensus 607 ~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l~k~k~is---~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~s 683 (790)
+++.++.+|. +.+|..|++.+.+.++.+|+.+|.++.+++ ..||+||..|++.|+.+|.++++ .+..
T Consensus 230 y~~d~~~~L~--~~~~~~l~~~~~~~~v~~Yl~~l~~~~~~~~~~~~~~~~l~~D~~~l~~~f~~~~~--------~~~~ 299 (399)
T 2fji_1 230 YLLDIKPQMN--SVLFVNFIDNVIGETIIKFLTALSFEHSFKNKNNKFLEAMKRDFEIFYQLFVKVLD--------GNES 299 (399)
T ss_dssp HHHHHGGGSC--HHHHHHHHHHHHHHHHHHHHHGGGGCCCCCCGGGHHHHHHHHHHHHHHHHHHHHTT--------TCTT
T ss_pred HHHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHHHHHHHhcc--------ccch
Confidence 9999999888 789999999999999999999999866677 89999999999999999999885 2345
Q ss_pred ceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhhh---CCCCchhHHHHHhhc-cCCcccccccccccc
Q psy17363 684 FTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKL---LPESDMTEFQRILDM-KGLKTNEKNNLINLF 749 (790)
Q Consensus 684 y~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~l---~~d~s~~~f~kIL~l-Kg~~r~eq~~lle~f 749 (790)
|++.|...+..++.+.. |.+ ++++.+++.|..+ .||++...+++||.+ +|++|++++++++..
T Consensus 300 ~~~~v~~~~~~l~~l~~-L~~--d~~~~i~~~~~~l~~~ypD~~~~~V~aiL~~R~D~~~~~~k~ll~~~ 366 (399)
T 2fji_1 300 KDTLITQNFTVMEFFMD-LSC--EPIDSILDIWQKYLEVYWDSRIDLLVGILKCRKDVSSSERKKIVQQA 366 (399)
T ss_dssp HHHHHHHHHHHHHHHHH-HHH--SCGGGHHHHHHHHHTTCTTCCSHHHHHHHTTCTTCCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH-hcC--CcHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 77789999999999999 886 4557788888655 589999999999999 679999999999988
No 3
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering, endoplasmic reticulum, ER-golgi transport, membrane, phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.1e-17 Score=192.13 Aligned_cols=610 Identities=14% Similarity=0.159 Sum_probs=383.0
Q ss_pred cccCchhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhh
Q psy17363 51 QSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLL 130 (790)
Q Consensus 51 ~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~L 130 (790)
++|-+||+.|+.+++++..|-.+|+.+-..+..-+.+ ...++.+- ++|-.--..-+..++...+ ..|.+=|
T Consensus 10 ~dl~~i~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~-------~~i~~~~~s~~~~~~l~~~-yg~l~il 80 (706)
T 3fhn_A 10 DDLLNINDRIKQVQNERNELASKLQNLKQSLASNDTE-VALSEVIA-------QDIIEVGASVEGLEQLRAK-YGDLQIL 80 (706)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCCCHHHH-------HHHHHSCSSHHHHHHHHHT-TCCCHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHhccccccchH-HHHHHHHH-------HHHHhccccHHHHHHHHHH-cCCcHHH
Confidence 5667789999999999999999998875533111111 11122122 2221111111233333333 3666666
Q ss_pred hhhhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhh----hccccccchhhHHHHHhhccCCCChh----HHH----HHHHH
Q psy17363 131 DTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQR----QYGEIVMPLQGVIEVMKHFQDSTDIP----QIL----ELRSQ 198 (790)
Q Consensus 131 D~AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r----~Y~e~~~ll~~~~~L~~~F~~y~~i~----~i~----~L~~~ 198 (790)
+..+.++..-.+.-+.++-|-.-=++|..++... .+.+...+...+..+.....+-.+++ +.+ .+..+
T Consensus 81 ~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (706)
T 3fhn_A 81 NKLEKVAVQQTQMQAGVDKLDSFERQLDELAEQPPDQFTLDDVKALHSKLTSVFATVPQINNIDSQYAAYNKLKSKVTGK 160 (706)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHTTSCCCCCTTSTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHHhhhcccccchhhhhhhhhcchHHHHHH
Confidence 6666666665555555554433333344443322 23333333333333321111212122 122 24445
Q ss_pred HHH-HHhHhHHHHHHHHHhhhcCCCCCCCc--C-----hhHHHHHHh----hhhccChhhhh----------------h-
Q psy17363 199 VAQ-IQNTLSEQITQDLKNAFQNPSSGSFV--P-----SKQIAEALR----VVSILDPKVKK----------------N- 249 (790)
Q Consensus 199 v~~-l~~~l~~qI~~df~~~~~~~~~~~~~--~-----~~~l~daC~----vvd~l~~~~k~----------------~- 249 (790)
+.. +.+.++..+..+|+..+...+|+.+. + ...++.++. +.|...|+... .
T Consensus 161 ~~~~l~~~~~~~ls~~l~~~L~~~kWp~~~~~~~~~~~~~~~~~~~~~l~kL~~Lq~p~~~~~~~~~~~~~~~~~~~~~~ 240 (706)
T 3fhn_A 161 YNDVIIQRLATNWSNTFDQKLLEAQWDTQKFASTSVGLVKCLRENSTKLYQLSLLYLPLEEETQNGDSERPLSRSNNNQE 240 (706)
T ss_dssp HHHHTHHHHHHHHHHHHHHHHHHTTTTSTTCCGGGSHHHHHHHHHHHHHHHHHTTCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCCcccCCcchhHHHHHHHHHHHHHHHHHHhccccccccccccccccccccCCCC
Confidence 544 56788899999999999888887532 1 134777776 67777765321 1
Q ss_pred ----HHHHHHHhhccceeeeeccCcchhhHhhhhhHHHHHHhhhcccccc----ccccCCCccccc--chhhHHHHHhhh
Q psy17363 250 ----ILEWFISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKKQLLHVEDK----FGTLFPPHWQLS--EKITLEFCERTR 319 (790)
Q Consensus 250 ----li~~~~~~~L~ey~~~F~~~~ea~~Ld~i~rRy~Wf~r~L~~~e~~----~~~iFP~~W~v~--~~l~~~Fc~~Tr 319 (790)
-++.+++.+...++.+|.++.++ ++++-.|.|+.+.|...=.. |...|+..=.+. ..++..--...|
T Consensus 241 p~llp~~~L~~P~~~RFrYHF~g~k~T---dKpEwyf~Fl~~~lq~~L~~~~~~f~d~~~~~~~~~~~~eFI~~LL~~vr 317 (706)
T 3fhn_A 241 PVLWNFKSLANNFNVRFTYHFHATSSS---SKIETYFQFLNDYLAENLYKCINIFHDDCNGLTKPVIHEQFINYVLQPIR 317 (706)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTCSCCCH---HHHHHHHHHHHHHHHHHHHHHHHHHCBGGGTBCHHHHHHHHHHHHSHHHH
T ss_pred ccchhHHHHHHHHHHHhhhhcCCCCCC---CCcHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHH
Confidence 28889999999999999988765 78887788888777766555 333333211111 122222236667
Q ss_pred hhhhhhhhccccchhHHHHHHHHhccccHHHHHHhhccCccccccccccccchhhhhccchhhhhhhhhccchHHHHHHH
Q psy17363 320 SELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRF 399 (790)
Q Consensus 320 ~~L~~iL~~~~~~idv~lLl~alq~T~~FE~~l~krf~~~~~~~~~~~~f~g~iS~~FepyL~~yv~~qdk~l~~~l~~~ 399 (790)
+.+...|.. -|+.+|.+.+..++.|++.|...|++.+ .|.++-+=+.|+..|++.|.+.-.+.++..
T Consensus 318 eKl~~~l~~----~d~~lLsHlI~Ell~FD~~Lr~~~~Y~~---------~Gl~~li~~~~f~~WL~~Ek~fA~~rf~~I 384 (706)
T 3fhn_A 318 DKVRSTLFQ----NDLKTLIVLISQILATDKNLLNSFHYHG---------LGLVSLISDEVWEKWINYEVEMANRQFINI 384 (706)
T ss_dssp HHHHHHHHT----SCHHHHHHHHHHHHHHHHHHHHHTCCCS---------CCGGGGSCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhHhcc----cchHHHHHHHHHHHHHHHHHHHhcCCCC---------CcchhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777764 2788999999999999999999997521 577776668899999999999944444444
Q ss_pred hhhHHHHHhchhhhhccCCCCCCcch---hhHHHHhhh--------ccccccccccCCchHHHHHHHHHHHHHHHHHHHh
Q psy17363 400 AEDSKQVLNNINETCETSAAPVLPSC---ADLFMFYKK--------SLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQ 468 (790)
Q Consensus 400 ~~~~~~~~~~~~~~d~~~~~~vl~Ss---~dLF~~yk~--------~l~~~~~ls~g~~L~~L~~~f~k~L~~Ya~~iL~ 468 (790)
++. ++ ...+|+ .+|+..++. .+....+++.. + ...++...+..|..++..
T Consensus 385 i~s--------~d-------~lt~sA~~~~~LLe~It~~l~~~~~~rY~~L~~~~~K--l--~f~IqiqL~d~Y~~~L~~ 445 (706)
T 3fhn_A 385 TKN--------PE-------DFPKSSQNFVKLINKIYDYLEPFYDLDFDLLVRYKLM--T--CSLIFMNLTSSYLDYILT 445 (706)
T ss_dssp TSS--------GG-------GGGGHHHHHHHHHHHHHHHHSHHHHCCCGGGGHHHHH--H--HHHHHHHHHHHHHHHHHT
T ss_pred HhC--------Cc-------cCCHHHHHHHHHHHHHHHhccccchhhcccccchHHH--H--HHHHHHhhHHHHHHHHhC
Confidence 321 11 112344 456666655 33333333332 2 347778888889887643
Q ss_pred hhhhhhhccccccchhccccccccccccccccccCCcccccceeEeecch-hHHHHhH-HHHHHHHhhhcCCcccccccC
Q psy17363 469 QNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTA-EYCLETT-QQLEQKLKEKVDPNLANKIDL 546 (790)
Q Consensus 469 ~~lp~~~~~~~~~~~s~~~~~~~~~~~~ke~~~~~~~~~~~~ic~ilnTA-dYc~~t~-~qLe~kl~e~i~~~~~~~i~~ 546 (790)
|. ++|+.. .+|+..--+...+..+|.|.|+- ||+.+.. -+|-+.+.+..+..+ .--|
T Consensus 446 ---~s-----------~lgr~~-----tke~~~~~g~~~L~~L~~V~~~L~dWsddvfFLeLw~~l~~~t~s~~--gSIF 504 (706)
T 3fhn_A 446 ---VD-----------SLNETR-----TKEQELYQTMAKLQHVNFVYRKIKSLSSNFIFIQLTDIVNSTESKKY--NSLF 504 (706)
T ss_dssp ---CC-----------CSCSEE-----EHHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHTTCCC--SCTT
T ss_pred ---cc-----------cccccc-----chHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHhcccCccc--CccH
Confidence 11 222210 11110000011334455555432 2221111 156666665544433 4489
Q ss_pred CccchhHHHHHHH-HHHHHHHhhhhcchhhhhHHhh-ccccccccccC--------ccccchhhhhhhhccccceecc-c
Q psy17363 547 SNEQDVFHNVISS-CIQLLVQDLELACEPALTAMVK-TNWSSVESVGD--------QSGYVTAITSHLKQSVPLIRTN-L 615 (790)
Q Consensus 547 ~~~~d~f~~vis~-~i~~Lv~~le~~~~~al~~m~k-~~W~~~e~vgd--------~S~Yv~~i~~~l~~~~~~i~~~-L 615 (790)
+++...|..+..+ ....+|..+...++.+++++.+ ..|.++....+ .|+.+..+...|+..+..+... |
T Consensus 505 DetIs~Y~~L~~~~~~~~Iv~~v~~eik~~lK~Y~k~s~W~s~~~~~~~~~~~~lspSaEL~~~L~~L~~~L~~L~~~lL 584 (706)
T 3fhn_A 505 QNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKISTWSTLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDI 584 (706)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTHHHHHCCGGGTCCCC------CCCCCCGGGHHHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCcccCCCCcccccccCCCCHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999999999 9999999999999999999999 68997653322 2677788888999999888887 5
Q ss_pred ccchhHHHHHHHhhhhchhHHHHhhhhccccccccchhHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeeccchhH
Q psy17363 616 SSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKA 695 (790)
Q Consensus 616 ~~~~~yf~~fc~k~~~~~i~~f~~~l~k~k~is~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~ 695 (790)
+ ...|+++...+++.+..-+++.|+...+|++.||.|+..|+..|+.+|. +|. ++ ....|.++
T Consensus 585 ~--~~~f~~IwR~ia~~Ld~yL~e~IL~~nkFS~~Ga~Qf~~D~~~L~~v~~-lp~-----------~~---~~~~~~~L 647 (706)
T 3fhn_A 585 P--LAISLKVKNELLNVIVNYFTESILKLNKFNQNGLNQFLHDFKSLSSILS-LPS-----------HA---TNYKCMSL 647 (706)
T ss_dssp C--HHHHHHHHHHHHHHHHHHHHHTTTTTSCBCHHHHHHHHHHHHHHHTTSC-CCT-----------TC---CCHHHHHH
T ss_pred C--HHHHHHHHHHHHHHHHHHHHHHHHhcCccCHHHHHHHHHHHHHHHHHhc-CCC-----------cc---hhhHHHHH
Confidence 7 7899999999999999999999999999999999999999999998887 763 11 35689999
Q ss_pred HHHHHHHHhhcCCC-chhHHHhhhhCCCCchhHHHHHhhccCCccccccc
Q psy17363 696 EMILKLVMASAEPD-ICFVEQFCKLLPESDMTEFQRILDMKGLKTNEKNN 744 (790)
Q Consensus 696 E~iLKll~~p~~~~-~~fv~~y~~l~~d~s~~~f~kIL~lKg~~r~eq~~ 744 (790)
...+++|..|.++. ..|... ..++.+...++...+.+|-++-+|.+.
T Consensus 648 ~E~l~LL~L~~d~~~~~f~~~--~y~~~~~~~~l~~~~~i~~l~~~~i~d 695 (706)
T 3fhn_A 648 HELVKILKLKYDPNNQQFLNP--EYIKTGNFTSLKEAYSIKYLKDTKIQD 695 (706)
T ss_dssp HHHHHHHGGGGCGGGTTTTSH--HHHHHCCCSHHHHHHTCSSSCHHHHHH
T ss_pred HHHHHHcCCCCCcchhhHHHH--HHHccCChHHHHHhcCcccCCHHHHHH
Confidence 99999999998664 223311 223556667788888888777666543
No 4
>3swh_A MUNC13-1, protein UNC-13 homolog A; alpha helical, neurotransmitter release, snare motif, exocyt; 2.65A {Rattus norvegicus}
Probab=98.08 E-value=7.9e-06 Score=88.62 Aligned_cols=292 Identities=14% Similarity=0.225 Sum_probs=174.2
Q ss_pred hhhccchhhhhhhhhccchHHHHHHHhhhHHHHHhchhhhhccCCCCCCcchhhHHHHhhhccccccccccCCc------
Q psy17363 374 GSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEP------ 447 (790)
Q Consensus 374 S~~FepyL~~yv~~qdk~l~~~l~~~~~~~~~~~~~~~~~d~~~~~~vl~Ss~dLF~~yk~~l~~~~~ls~g~~------ 447 (790)
...|+||+..|++.-+....+.+.+.+...+.. +.+.. +++..--.|++|+|..+++++....+|.=.++
T Consensus 8 ~~wF~~~V~~Wl~~~~~k~~~~v~~Ai~~Dk~~---~~~~~-~~~~~hSsSvvDif~~~~Q~~~~~~~L~WpD~~~~~~f 83 (341)
T 3swh_A 8 PAWFEPFVIQWLDENEEVSRDFLHGALERDKKD---GFQQT-SEHALFSCSVVDVFSQLNQSFEIIKKLECPDPQIVGHY 83 (341)
T ss_dssp -CCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TCCCS-SSSCCSCTHHHHHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC---Ccccc-ccCccccchHHHHHHHHHHHHHHHHHCCCCCHHHHHHH
Confidence 457999999999999888888888777655443 12211 03456677999999999999999999977654
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhhhccccccchhccccccccccccccccccCCcccccceeEeecchhHHHHhHHH
Q psy17363 448 MVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQQ 527 (790)
Q Consensus 448 L~~L~~~f~k~L~~Ya~~iL~~~lp~~~~~~~~~~~s~~~~~~~~~~~~ke~~~~~~~~~~~~ic~ilnTAdYc~~t~~q 527 (790)
+..+++.+++.+..|++. +...++.... ++ ....+|.++|.-+|+...+..
T Consensus 84 ~t~l~~~i~~~~~~Y~~~-l~~~~~~~~~--------------------~e--------~~~~~Cv~lNNie~lR~~L~~ 134 (341)
T 3swh_A 84 MRRFAKTISNVLLQYADI-VSKDFASYCS--------------------KE--------KEKVPCILMNNTQQLRVQLEK 134 (341)
T ss_dssp HHHHHHHHHHHHHHHHHH-HHHHHHHHCC--------------------TT--------SCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhhh--------------------hh--------cccchhhhcccHHHHHHHHHH
Confidence 556899999999999996 4777765311 01 123479999999999988888
Q ss_pred HHHHHhh-hcCCcccccccCCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhh-------------ccccccccccCc
Q psy17363 528 LEQKLKE-KVDPNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVK-------------TNWSSVESVGDQ 593 (790)
Q Consensus 528 Le~kl~e-~i~~~~~~~i~~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k-------------~~W~~~e~vgd~ 593 (790)
|.+.+.- .+++...+ -+.+-+.....++.+....+...+...++...+.|.. ..|.... .+.
T Consensus 135 l~~~l~~~~l~~~~~~--~~~~lq~~l~~vl~~l~~~~~~~~~~~i~~~v~~m~~~l~~i~~~~~~~~~~~~~~~--~~~ 210 (341)
T 3swh_A 135 MFEAMGGKELDAEASG--TLKELQVKLNNVLDELSHVFATSFQPHIEECVRQMGDILSQVKGTGNVPASACSSVA--QDA 210 (341)
T ss_dssp HHHHTTTTTSCHHHHH--HHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTCC-----------CHH--HHH
T ss_pred HHHhcchhhHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCcccccccc--ccH
Confidence 8777632 22211111 1112223333344443333344444444445444431 1122111 112
Q ss_pred cccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHHhhh-------------hc--cccccccchhHHHHH
Q psy17363 594 SGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHV-------------FK--CKPLSTVGAEQLLLD 658 (790)
Q Consensus 594 S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l-------------~k--~k~is~~gaeQLllD 658 (790)
+.-+..+...|...+..+...|. ..-|.++...+-..++..+...+ -+ -|++++.-.+.|..+
T Consensus 211 ~~ai~PLm~yLd~~L~~l~~~L~--~~~f~rvL~~lW~~~l~~l~~~i~lP~~~~~~~~~~~~~~~r~~~~~~~~~l~~~ 288 (341)
T 3swh_A 211 DNVLQPIMDLLDSNLTLFAKICE--KTVLKRVLKELWKLVMNTMERTIVLPPEFSKLKDHMVREEAKSLTPKQCAVVELA 288 (341)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHTTSCGGGCSSSCC----------CTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcccchhhhhHhhhcccccCCCCHHHHHHHHHH
Confidence 34566677777777777777776 66777777777777777777665 11 366777778999999
Q ss_pred HHHHHHHhccCCCchhhhhhcCCccceeeeec--cchhHHHHHHHHHhhcCCCchhHHHhh
Q psy17363 659 IHMLKTVLLDLPSIGSQVVRKAPASFTKVVVK--GMTKAEMILKLVMASAEPDICFVEQFC 717 (790)
Q Consensus 659 ~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~--~~~k~E~iLKll~~p~~~~~~fv~~y~ 717 (790)
.+.|+.+|+.= |. -.| ...+.+ ....++.+|.+-..+.+ .+++.|.
T Consensus 289 L~~L~~fFhA~---G~----GL~---~~~Leks~~~~~l~~~L~L~~~~T~---~LI~~f~ 336 (341)
T 3swh_A 289 LDTIKQYFHAG---GV----GLK---KTFLEKSPDLQSLRYALSLYTQATD---LLIKTFV 336 (341)
T ss_dssp HHHHHHHHHGG---GT----SCC---HHHHHTCHHHHHHHHHHHHC---------------
T ss_pred HHHHHHHhccC---CC----CCC---HHHHccChhHHHHHHHHHHhcCCHH---HHHHHHH
Confidence 99999999931 11 112 112222 46778888888877654 4677665
No 5
>2a2f_X Exocyst complex component SEC15; all helical structure, protein transport; 2.50A {Drosophila melanogaster}
Probab=97.65 E-value=7.3e-05 Score=80.50 Aligned_cols=175 Identities=15% Similarity=0.169 Sum_probs=126.8
Q ss_pred ecchhHHHHhHHHHHHHHhhhcCCcccccccCCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhhccccccccccCcc
Q psy17363 515 LTTAEYCLETTQQLEQKLKEKVDPNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQS 594 (790)
Q Consensus 515 lnTAdYc~~t~~qLe~kl~e~i~~~~~~~i~~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k~~W~~~e~vgd~S 594 (790)
+|+ +|.+.....||+-+......+-.. .+ ...+.|.+..+.|...+...+..+++.-+ ++...+|..-+.-|..|
T Consensus 144 iNl-~~le~ac~~le~~l~~~~~~~~~~--~l-~a~~~f~~~r~~Ae~~I~~~v~~KIDdfl-~la~yDW~~~~~~~~ps 218 (325)
T 2a2f_X 144 IDT-QYLEKAGPFLDEFVCHMTNTERSV--SQ-TPSAMFHVARQDAEKQVGLRICSKIDEFF-ELSAYDWLLVEPPGIAS 218 (325)
T ss_dssp HHH-HHHHTTHHHHHHHHHHHHTCCC----------CCSCCCTTHHHHHHHHHHHHHHHHHH-TTCCTTCC----CCSCC
T ss_pred HHH-HHHHHHHHHHHHHHHHHhCCCccc--ch-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCCCCCCCCCcc
Confidence 454 466777788888777754332222 22 35677888899999999999999999999 89999999988888899
Q ss_pred ccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHHhhhhcc--ccccccchhHHHHHHHHHHHHhccCCCc
Q psy17363 595 GYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKC--KPLSTVGAEQLLLDIHMLKTVLLDLPSI 672 (790)
Q Consensus 595 ~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l~k~--k~is~~gaeQLllD~~~Lk~~ll~lp~~ 672 (790)
.||.+++..|+..++. -..|. +......|-.....+..++++-+..- |.++..|.+|+.+|+.-+..+..+.|.-
T Consensus 219 ~yi~dli~fL~~~f~s-l~~LP--~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~av~~~~~Dv~~lE~fa~~~~v~ 295 (325)
T 2a2f_X 219 AFITDMISYLKSTFDS-FAFKL--PHIAQAACRRTFEHIAEKIYSIMYDEDVKQISTGALTQINLDLMQCEFFAASEPVP 295 (325)
T ss_dssp HHHHHHHHHHHHHHHT-TTTTS--HHHHHHHHHHHHHHHHHHHHHHHTC------CCTTHHHHHHHHHHHHHHHTTCSSS
T ss_pred HHHHHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHHHHHHHHHhcCcchhhcCHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999988873 44555 66777788888888889999988855 8999999999999999999999886642
Q ss_pred hhhhhhcCCccceeeeeccchhHHHHHHHHHhhc
Q psy17363 673 GSQVVRKAPASFTKVVVKGMTKAEMILKLVMASA 706 (790)
Q Consensus 673 ~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~ 706 (790)
|-. ...+...|..+.-++-++++.+
T Consensus 296 ~l~---------~~~L~~~F~eLrQli~Ll~~~~ 320 (325)
T 2a2f_X 296 GLK---------EGELSKYFLRNRQLLDLLILEH 320 (325)
T ss_dssp SCC---------SSTTGGGGHHHHHHHHHHHCC-
T ss_pred Ccc---------cchHHHHHHHHHHHHHHHHhhh
Confidence 211 1235667888888888888764
No 6
>3hr0_A COG4; conserved oligomeric golgi complex, intracellular trafficking, vesicle tethering, multisubunit tethering complex, exocyst; 1.90A {Homo sapiens}
Probab=97.43 E-value=0.00019 Score=75.01 Aligned_cols=213 Identities=14% Similarity=0.239 Sum_probs=138.6
Q ss_pred eEeecchhHHHHhHH----HHHHHHhhhcCCcc-----cccc-----cCCccchhHHHHHHHHHHHHH-Hhhhhcchhhh
Q psy17363 512 CCVLTTAEYCLETTQ----QLEQKLKEKVDPNL-----ANKI-----DLSNEQDVFHNVISSCIQLLV-QDLELACEPAL 576 (790)
Q Consensus 512 c~ilnTAdYc~~t~~----qLe~kl~e~i~~~~-----~~~i-----~~~~~~d~f~~vis~~i~~Lv-~~le~~~~~al 576 (790)
|..||+.|-|.+-+. .|++.+.+....+- .++| .|.+..+.|.++++.+++.|. +.+-..+.|.+
T Consensus 23 lv~LNnld~s~eyi~rL~~~l~~~l~~~Fp~~~d~~~~~~kv~~~l~~l~~~~~k~~~ll~~gi~~Lf~~~ikprLr~~l 102 (263)
T 3hr0_A 23 LVTLNNVEVCSENISTLKKTLESDCTKLFSQGIGGEQAQAKFDSCLSDLAAVSNKFRDLLQEGLTELNSTAIKPQVQPWI 102 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred hheeccHHHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 667886555555445 44555444332110 1112 444556678899999999987 56666888888
Q ss_pred hHHhhcccccccc----ccCccccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHHhhhhccccccccch
Q psy17363 577 TAMVKTNWSSVES----VGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGA 652 (790)
Q Consensus 577 ~~m~k~~W~~~e~----vgd~S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~l~k~k~is~~ga 652 (790)
..+..++.+--+. .+...+++..++..+...+-.++..|. +.-|..+..-+++.+...+=..|.+ ++++..||
T Consensus 103 ~~f~~~~y~l~eee~~~~e~~d~~~~~F~~~w~~ll~p~k~~Lt--~~~y~~Ll~~~~~~la~~lE~~i~~-~~fn~lGa 179 (263)
T 3hr0_A 103 NSFFSVSHNIEEEEFNDYEANDPWVQQFILNLEQQMAEFKASLS--PVIYDSLTGLMTSLVAVELEKVVLK-STFNRLGG 179 (263)
T ss_dssp HGGGGSCBSCCHHHHHHHHHSCCSHHHHHHHHHHHHHHHHHHSC--HHHHHHHHHHHHHHHHHHHHHHHTT-CCBCHHHH
T ss_pred HHHhcccccCCHhHHhhhhcccHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHh-CCcCchhH
Confidence 7777665442110 011125676777776666655566665 5556666666666554444444444 78999999
Q ss_pred hHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhh----hCCCCchhHH
Q psy17363 653 EQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCK----LLPESDMTEF 728 (790)
Q Consensus 653 eQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~----l~~d~s~~~f 728 (790)
=||-.|+..+-+++.... .|. |...|.|+--|.-+|... .+++..+-|.. ..|.-|+.+-
T Consensus 180 l~LdrDvr~li~~~~~~~------------~~~--lRekF~RL~QI~~lLnle--~~eev~d~~~~~~~~~~W~Ls~~E~ 243 (263)
T 3hr0_A 180 LQFDKELRSLIAYLTTVT------------TWT--IRDKFARLSQMATILNLE--RVTEILDYWGPNSGPLTWRLTPAEV 243 (263)
T ss_dssp HHHHHHHHHHHHHHHTTS------------CTT--HHHHTHHHHHHHHHHTCS--SGGGGGGTSGGGGTTCCCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHhcc------------chh--hhHHHHHHHHHHHHHcCC--ChHHHHHHhcccCCCccccCCHHHH
Confidence 999999999999997532 232 788999999999988875 45667664433 3467899999
Q ss_pred HHHhhcc-CCcccccc
Q psy17363 729 QRILDMK-GLKTNEKN 743 (790)
Q Consensus 729 ~kIL~lK-g~~r~eq~ 743 (790)
.+|+.++ +++..+..
T Consensus 244 r~il~lRvDf~~e~I~ 259 (263)
T 3hr0_A 244 RQVLALRIDFRSEDIK 259 (263)
T ss_dssp HHHHTTBTTSCHHHHH
T ss_pred HHHHHhhccCCHHHHH
Confidence 9999997 66655443
No 7
>3n1e_A Vacuolar protein sorting-associated protein 54; spinal muscular atrophy, vesicle trafficking, golgi apparatu tethering complex, GARP.; 1.70A {Mus musculus} PDB: 3n1b_A
Probab=87.53 E-value=1.1 Score=41.90 Aligned_cols=121 Identities=12% Similarity=0.157 Sum_probs=84.7
Q ss_pred cCCccchhHHHHHHHHHHHHHHhhhhcchhhhhHHhhccccccccccCccccchhhhhhhhccccceecccccchhHHHH
Q psy17363 545 DLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQ 624 (790)
Q Consensus 545 ~~~~~~d~f~~vis~~i~~Lv~~le~~~~~al~~m~k~~W~~~e~vgd~S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~ 624 (790)
.|+.....|.+-++.--+-||..+.......++ +|..- ....|+|+.+|.+.+..--..+...|. +.-.+-
T Consensus 9 efDkv~rdy~eH~~eI~~KLv~Im~~r~~~~l~-----~Wd~k--~pvpS~~m~tl~Ke~~kLH~~Ls~~LP--~~~v~~ 79 (141)
T 3n1e_A 9 HFDHITKDYHDHIAEISAKLVAIMDSLFDKLLS-----KYEVK--APVPSPCFRNICKQMTKMHEAIFDLLP--EEQTQM 79 (141)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCCC--SSSSCHHHHHHHHHHHHHHHHHTTTSC--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhccC--CCCCCHHHHHHHHHHHHHHHHHHhhCC--HHHHHH
Confidence 466667778888888888888888775554443 79642 234789998886655333333344444 344445
Q ss_pred HHHhhhhchhHHHHhhhhccccccccchhH--HHHHHHHHHHHhccCCCchh
Q psy17363 625 FCVKFANSFIPKLVQHVFKCKPLSTVGAEQ--LLLDIHMLKTVLLDLPSIGS 674 (790)
Q Consensus 625 fc~k~~~~~i~~f~~~l~k~k~is~~gaeQ--LllD~~~Lk~~ll~lp~~~~ 674 (790)
+..++-.+|-.++-.++-++..-++.|.+. +..|+.-..+-|-.|+..+.
T Consensus 80 Im~~Vf~~fk~~l~~~~~~~~i~~~~G~q~g~v~~Dv~ff~~~L~~L~g~~d 131 (141)
T 3n1e_A 80 LFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKD 131 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSSSHHHHHHHHHHHHHHHHHHTSTTCTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcccchHHHHHHHHHHHHhcccCCCCc
Confidence 666667777777788888887778888776 88999999999999987653
No 8
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=78.30 E-value=16 Score=36.97 Aligned_cols=190 Identities=13% Similarity=0.172 Sum_probs=110.8
Q ss_pred hhhhHHHHhhhhhHHHHHhhhccccccchhhHHHHHhhccCC---CChhHHHHHHHHHHHHHhHhHHHHHHHHHhhhcCC
Q psy17363 145 NHLHMLVTGVHSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDS---TDIPQILELRSQVAQIQNTLSEQITQDLKNAFQNP 221 (790)
Q Consensus 145 krL~mL~~~v~~L~~l~~~r~Y~e~~~ll~~~~~L~~~F~~y---~~i~~i~~L~~~v~~l~~~l~~qI~~df~~~~~~~ 221 (790)
+++.-+.+.++.|..++..|+|.+|+.++......+...++= .+......+...++.-+..|.+++..++.. ..
T Consensus 13 ~~~~wl~~~~deLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~ 89 (235)
T 2d2s_A 13 QRLKFLDEGVEEIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SN 89 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CS
T ss_pred hhHHHHHcccHHHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cC
Confidence 667777788999999999999999999999999988654431 234557778888888888999999887754 11
Q ss_pred CCCCCcChhHHHHHHhhhhccChhhh--hhHHHHHHHhhccceee-eeccCcchhhHhhhhhH-HHHHHhhhcccccccc
Q psy17363 222 SSGSFVPSKQIAEALRVVSILDPKVK--KNILEWFISLQLSEYLV-LFDESEDSAWLDKIDKR-YAWFKKQLLHVEDKFG 297 (790)
Q Consensus 222 ~~~~~~~~~~l~daC~vvd~l~~~~k--~~li~~~~~~~L~ey~~-~F~~~~ea~~Ld~i~rR-y~Wf~r~L~~~e~~~~ 297 (790)
....++.+...+--||.+-+ +-+++..-+..=...+. .|. ++....+.++.+= |.=+++.-. .|.
T Consensus 90 ------~~~~~r~~v~~L~rLg~~~~A~~lfL~~rs~~i~~~~r~l~~~-gd~~~Yi~~Ls~i~Fs~I~~t~~----~f~ 158 (235)
T 2d2s_A 90 ------EIVHLKSGTENMIKLGLPEQALDLFLQNRSNFIQDLILQIGSV-DNPTNYLTQLAVIRFQTIKKTVE----DFQ 158 (235)
T ss_dssp ------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCC--C-CSHHHHHHHHHHHHHHHHHHHHH----HHH
T ss_pred ------CHHHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHHHHHH----HHH
Confidence 13567777777777776433 33333322222222222 343 4445556666632 333333333 345
Q ss_pred ccCCCcccccchhhHHHHHhhhhhhhh---hhhccccchhHHHHHHHHhccccHHHHH
Q psy17363 298 TLFPPHWQLSEKITLEFCERTRSELGK---IMSKRKFEIDVKLLLYAIQKTSNFEQLL 352 (790)
Q Consensus 298 ~iFP~~W~v~~~l~~~Fc~~Tr~~L~~---iL~~~~~~idv~lLl~alq~T~~FE~~l 352 (790)
.+||++ ...++..|...-++++.. ++++.-.. +..+--.+++.+..+=..|
T Consensus 159 ~~F~~~---~~~~~S~lV~Wa~~eve~f~~l~~rqv~~-~~~l~~ecv~i~~~~~~~L 212 (235)
T 2d2s_A 159 DIFKEL---GAKISSILVDWCSDEVDNHFKLIDKQLLN-DEMLSPGSIKSSRKQIDGL 212 (235)
T ss_dssp HHSTTC---CHHHHHHHHHHHHHHHHHHHHHHHHHTTC----CCHHHHHHHHHHHHGG
T ss_pred HHhCCC---CcccccHHHHHHHHHHHHHHHHHHHHccC-CccHHHHHHHHHHHHHHHH
Confidence 689864 224555555555555542 22221111 3334447777776665444
No 9
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=61.74 E-value=33 Score=36.86 Aligned_cols=113 Identities=18% Similarity=0.282 Sum_probs=74.8
Q ss_pred chhhhhhcccCcccccC-chhHHHHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhh
Q psy17363 38 DSVQYINSLFPTEQSLS-NIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKS 116 (790)
Q Consensus 38 d~~~~In~lfp~e~SL~-~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~s 116 (790)
-..+.++-+.|+-+-|. -|+.....++.+|..|..++....+.+ .++..-+..+.+.+......+...
T Consensus 39 C~DeDwG~kCPsGCrLqg~Ldk~er~~~~rIe~L~~~L~~~s~s~-----------~~~~~y~~~~~~~lk~~~~q~~dn 107 (390)
T 1deq_A 39 CSDEDWNTKCPSGCRMKGLIDEVDQDFTSRINKLRDSLFNYQKNS-----------KDSNTLTKNIVELMRGDFAKANNN 107 (390)
T ss_pred CchhhccCCCCccchHHHHHHHhhhhHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHHHHHhhccc
Confidence 34788999999999885 667777778888888888888775544 344555566666666666777777
Q ss_pred HHHHHHHhhhhh-hhhhhhhhhhhhhhhhhhhh----HHHHhhhhhHHHH
Q psy17363 117 EEMVREITRDIK-LLDTAKRNLTTAITCLNHLH----MLVTGVHSLRTLI 161 (790)
Q Consensus 117 E~~V~~it~dIk-~LD~AKrNLt~sit~LkrL~----mL~~~v~~L~~l~ 161 (790)
+..+.+...++. +.-+.|+|+...+.-|+.|+ -++.-+.+|+.-+
T Consensus 108 dn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~kiqRLE~~I 157 (390)
T 1deq_A 108 DNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVDMKRLEVDI 157 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777766555553 45556677766666555555 3334444454444
No 10
>2jqq_A Conserved oligomeric golgi complex subunit 2; protein, helical bundle, vesicular transport, tethering, protein transport; NMR {Saccharomyces cerevisiae}
Probab=42.71 E-value=52 Score=31.96 Aligned_cols=44 Identities=18% Similarity=0.370 Sum_probs=22.0
Q ss_pred hhhhhhhhHHHHHHHHHHhhhhhhhh-hhhHHHHHHHhhhhhhhh
Q psy17363 88 GKKALEDSQKVIMQLFSQVRDIKSKA-EKSEEMVREITRDIKLLD 131 (790)
Q Consensus 88 ~~~~l~~~~~~i~~L~~~i~~Ik~~a-~~sE~~V~~it~dIk~LD 131 (790)
....|+..+.++++-..++.....+. .++...|.+--.=.+.||
T Consensus 45 ~l~eLQ~v~~Dl~~F~~QL~qL~~~~i~~Tre~v~d~l~YLkkLD 89 (204)
T 2jqq_A 45 TLINLEKTQSDLQKFMTQLDHLIKDDISNTQEIIKDVLEYLKKLD 89 (204)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHSCSTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 34456666666666666665544443 566666665555555555
No 11
>2olt_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; HET: MSE; 2.00A {Shewanella oneidensis} PDB: 2iiu_A*
Probab=32.92 E-value=2.2e+02 Score=27.87 Aligned_cols=53 Identities=21% Similarity=0.184 Sum_probs=25.8
Q ss_pred HHHhhhchhhhHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHH
Q psy17363 60 IMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMV 120 (790)
Q Consensus 60 ~~~l~~~~~~Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V 120 (790)
+..++++...+..+|...+..-.-.. -.++.+..|...+++|-..++.+-..+
T Consensus 55 i~~~E~~aD~l~~~I~~~L~~~~~~P--------~dredi~~L~~~lD~I~D~~~~~a~~~ 107 (227)
T 2olt_A 55 ISLAEKQGDSLKREIRLTLPSGLFMP--------VERTDLLELLTQQDKIANKAKDISGRV 107 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGCCSCS--------SCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccCC--------CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455555555544444322221 112556777666666666555544433
No 12
>3mmi_A Myosin-4; globular tail, dilute domain, motor protein; 2.30A {Saccharomyces cerevisiae}
Probab=32.75 E-value=2.7e+02 Score=30.08 Aligned_cols=156 Identities=8% Similarity=-0.028 Sum_probs=90.7
Q ss_pred HHHHHHhhhhcchhhhhHHhhccccccccccCccccchhhhhhhhccccceecccccchhHHHHHHHhhhhchhHHHHhh
Q psy17363 561 IQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIRTNLSSSRKYFTQFCVKFANSFIPKLVQH 640 (790)
Q Consensus 561 i~~Lv~~le~~~~~al~~m~k~~W~~~e~vgd~S~Yv~~i~~~l~~~~~~i~~~L~~~~~yf~~fc~k~~~~~i~~f~~~ 640 (790)
-+.++..+...+.|.+..|........-+ .+.+..+..++..|......++.+-.. +...++++-.+..-+-...+|.
T Consensus 153 Y~~~i~~lkk~L~~ilP~~~~~~~~k~~~-~~~~~s~~~Il~~L~~~~~~L~~~~V~-p~li~QlfsQLF~fIna~lFN~ 230 (386)
T 3mmi_A 153 YSTWLVKFMKHASAHIEIFDMVLNEKLFK-NSGDEKFAKLFTFLNEFDAVLCKFQVV-DSMHTKIFNDTLKYLNVMLFND 230 (386)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHTCGGGSS-SCCHHHHHHHHHHHHHHHHHHHHTTCC-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcccccccccccccC-CCCccCHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHHhHHHHHH
Confidence 34555666665555555554432222111 223445777777777666555443221 4444555555555555555666
Q ss_pred hhcc-ccccccchhHHHHHHHHHHHHhccCCCchhhhhhcCCccceeeeeccchhHHHHHHHHHhhcCCCchhHHHhhhh
Q psy17363 641 VFKC-KPLSTVGAEQLLLDIHMLKTVLLDLPSIGSQVVRKAPASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCKL 719 (790)
Q Consensus 641 l~k~-k~is~~gaeQLllD~~~Lk~~ll~lp~~~~~~~~~~p~sy~k~V~~~~~k~E~iLKll~~p~~~~~~fv~~y~~l 719 (790)
|.-- +-.+---|.|+..-+..|..-..+ .. | .....+..+--..++|.+|....+++ ++-..+
T Consensus 231 LLlRr~~cs~s~G~qIr~NLs~LEeW~~~--~l--------~-----~a~~~L~~L~QA~~LLQ~~K~t~~Di-~~i~~~ 294 (386)
T 3mmi_A 231 LITKCPALNWKYGYEVDRNIERLVSWFEP--RI--------E-----DVRPNLIQIIQAVKILQLKISNLNEF-KLLFDF 294 (386)
T ss_dssp HHHHCCCBCHHHHHHHHHHHHHHHHHHTT--TS--------S-----CCGGGGHHHHHHHHHHHCCCCCHHHH-HHHHTT
T ss_pred HHccCcccCcchHHHHHhhHHHHHHHHHh--cc--------H-----HHHHHHHHHHHHHHHHccCCCCHHHH-HHHHHh
Confidence 6533 335656689999999999887775 11 1 12347888888999998885543332 223344
Q ss_pred CCCCchhHHHHHhhc
Q psy17363 720 LPESDMTEFQRILDM 734 (790)
Q Consensus 720 ~~d~s~~~f~kIL~l 734 (790)
.+.-++...++||.+
T Consensus 295 C~~Lsp~QL~kIL~~ 309 (386)
T 3mmi_A 295 WYALNPAQIQAILLK 309 (386)
T ss_dssp CCSSCHHHHHHHHHT
T ss_pred cccCCHHHHHHHHHh
Confidence 556666677777665
No 13
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=32.55 E-value=3.5e+02 Score=29.50 Aligned_cols=62 Identities=16% Similarity=0.246 Sum_probs=37.5
Q ss_pred hHHHHHHHHhccccCCcchhhhhhhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhhhhhhh
Q psy17363 70 MDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAIT 142 (790)
Q Consensus 70 Ld~ei~~~v~~q~~~~~~~~~~l~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNLt~sit 142 (790)
+...+...+.++ .+..+.++++++.+++++.+...- ..+......++. +||.+++||...-+
T Consensus 357 ~~~~~~~vl~G~----~t~eeal~~~~~~i~~~l~~~~~~-~e~~~~~~~~~~------~~~~~~~~~~~~~~ 418 (471)
T 3mq9_A 357 VRTAVINAASGR----QTVDEALKDAQTRITAARDGLRAV-MEARNVTHLLQQ------ELTEAQKGFQDVEA 418 (471)
T ss_dssp HHHHHHHHHHSS----SCHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC----CCHHHHHHHHHHHHHHHHHhhHHH-HHhhhHHHHHHH------HHHHHhhhHHHHHH
Confidence 444455554443 245667888888888877776522 233344433433 78889999876544
No 14
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.89 E-value=1.7e+02 Score=29.41 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=30.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHhhhcCCCCCCCcChhHHHHHHhhhhccChhhhhhHHHHHHHhhccceeeee
Q psy17363 195 LRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLF 266 (790)
Q Consensus 195 L~~~v~~l~~~l~~qI~~df~~~~~~~~~~~~~~~~~l~daC~vvd~l~~~~k~~li~~~~~~~L~ey~~~F 266 (790)
-...+..+.-....+...+|...|... ++.+-..+|.| |..+++.|-.+|
T Consensus 138 Yi~~Ls~i~Fs~I~~t~~~f~~~F~~~---------------------~~~~~S~lV~W-a~~eve~f~~l~ 187 (235)
T 2d2s_A 138 YLTQLAVIRFQTIKKTVEDFQDIFKEL---------------------GAKISSILVDW-CSDEVDNHFKLI 187 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTC---------------------CHHHHHHHHHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCC---------------------CcccccHHHHH-HHHHHHHHHHHH
Confidence 344455555566677788888888531 34555677889 455555555444
No 15
>4afl_A P29ING4, inhibitor of growth protein 4; cell cycle, tumour suppressor, chromatin remodelling; 2.28A {Homo sapiens}
Probab=30.75 E-value=1.2e+02 Score=26.27 Aligned_cols=80 Identities=14% Similarity=0.254 Sum_probs=43.5
Q ss_pred cccCchhHHHHHhhhchhhhHHHHHHHHhcccc--------CCc-chhhhhhhhHHHHHHHHHHhhhh-hhhhhhhHHHH
Q psy17363 51 QSLSNIDDVIMKMESNIKEMDEEIETVVRSQSG--------VGQ-DGKKALEDSQKVIMQLFSQVRDI-KSKAEKSEEMV 120 (790)
Q Consensus 51 ~SL~~ld~l~~~l~~~~~~Ld~ei~~~v~~q~~--------~~~-~~~~~l~~~~~~i~~L~~~i~~I-k~~a~~sE~~V 120 (790)
+++++||.-+...-..++.+|.+.....++--. .+. +....- ..-..|.+.+.+...+ .+|..-++++.
T Consensus 11 d~ie~LP~El~r~~~~irelD~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~-~~l~~I~~~~~~~~~l~dEKv~lA~~~~ 89 (104)
T 4afl_A 11 DSIENLPFELQRNFQLMRDLDQRTEDLKAEIDKLATEYMSSARSLSSEEKL-ALLKQIQEAYGKCKEFGDDKVQLAMQTY 89 (104)
T ss_dssp HSGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCChhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356777877777777788777777666542110 110 111111 1113333333333332 34556667777
Q ss_pred HHHhhhhhhhh
Q psy17363 121 REITRDIKLLD 131 (790)
Q Consensus 121 ~~it~dIk~LD 131 (790)
.-+-+.|++||
T Consensus 90 dlvdkhirrLD 100 (104)
T 4afl_A 90 EMVDKHIRRLD 100 (104)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 77778888888
No 16
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=30.17 E-value=49 Score=35.57 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=10.4
Q ss_pred hhhHHHHHHHhhhhhhhh
Q psy17363 114 EKSEEMVREITRDIKLLD 131 (790)
Q Consensus 114 ~~sE~~V~~it~dIk~LD 131 (790)
...+..|.+...+|++|+
T Consensus 137 r~Lq~~l~~q~~kiqRLE 154 (390)
T 1deq_A 137 NLLQKNVRDQLVDMKRLE 154 (390)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555556666666666
No 17
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=28.93 E-value=25 Score=39.28 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=27.7
Q ss_pred CchhhhhhcccCcccccC-chhHHHHHhhhchhhhHHHHHHH
Q psy17363 37 FDSVQYINSLFPTEQSLS-NIDDVIMKMESNIKEMDEEIETV 77 (790)
Q Consensus 37 fd~~~~In~lfp~e~SL~-~ld~l~~~l~~~~~~Ld~ei~~~ 77 (790)
|-+.+.++-+.|+-+-|. -|+.....+.+.|..|.+++.+.
T Consensus 35 fCaDeDwGvkCPSGCrLQglLdkqErDltkrINELKnqLEdl 76 (562)
T 3ghg_A 35 FCSDEDWNYKCPSGCRMKGLIDEVNQDFTNRINKLKNSLFEY 76 (562)
T ss_dssp BCCSSSBTTEEECHHHHHHHHHHHHHHHHHHHHHHHHHHTHH
T ss_pred cccccccCCCCCcccchhhhHHhhcCcHHHHHHHHHHHHHHH
Confidence 446667888999988875 45555556666666666666555
No 18
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=25.27 E-value=3.9e+02 Score=33.02 Aligned_cols=28 Identities=11% Similarity=0.324 Sum_probs=0.0
Q ss_pred cCchhHHHHHhhhchhhhHHHHHHHHhc
Q psy17363 53 LSNIDDVIMKMESNIKEMDEEIETVVRS 80 (790)
Q Consensus 53 L~~ld~l~~~l~~~~~~Ld~ei~~~v~~ 80 (790)
+.++-.....++.++..|+..+.+..++
T Consensus 916 ~~~l~~~~~~LE~kl~eLq~rL~~~e~~ 943 (1080)
T 2dfs_A 916 VERYKKLHIGLENKIMQLQRKIDEQNKE 943 (1080)
T ss_dssp ----------------------------
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444455555555555555444333
No 19
>2b1e_A Exocyst complex component EXO70; tethering complex, endocytosis/exocytosis complex; 2.00A {Saccharomyces cerevisiae} PDB: 2b7m_A 2pfv_A
Probab=23.47 E-value=1.2e+02 Score=34.67 Aligned_cols=88 Identities=8% Similarity=0.115 Sum_probs=61.3
Q ss_pred hhhhhhhhhhhhhhhhHHHHhhhhhHHHHHhh-hccccccchhhHHHHH---hhccCC--CChh--HHHHHHHHHHHHHh
Q psy17363 133 AKRNLTTAITCLNHLHMLVTGVHSLRTLIEQR-QYGEIVMPLQGVIEVM---KHFQDS--TDIP--QILELRSQVAQIQN 204 (790)
Q Consensus 133 AKrNLt~sit~LkrL~mL~~~v~~L~~l~~~r-~Y~e~~~ll~~~~~L~---~~F~~y--~~i~--~i~~L~~~v~~l~~ 204 (790)
|++|+..++..+.++.--.++..+++..+.++ +.......+.++..|- .+|+.. ++.+ +....+.++..+.+
T Consensus 1 ~~~NId~~l~~i~~v~~~~~~~~~~e~iI~~Gp~~~~l~~Yl~al~rl~~al~~~~~~n~~s~e~~~f~g~l~~~~~L~~ 80 (564)
T 2b1e_A 1 GHMNIESTLNSVASVKDLANEASKYEIILQKGINQVGLKQYTQVVHKLDDMLEDIQSGQANREENSEFHGILTHLEQLIK 80 (564)
T ss_dssp -------CCGGGCCHHHHHHHHHHHHHHHHTCHHHHCHHHHHHHHHHHHHHHHHHHC----CCCSHHHHHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHHHHHHhcCCCchhhhhhHHHHHHHHHHHH
Confidence 68899999999999999999999999999876 4355556666666554 355553 3333 56667888888888
Q ss_pred HhHHHHHHHHHhhhcC
Q psy17363 205 TLSEQITQDLKNAFQN 220 (790)
Q Consensus 205 ~l~~qI~~df~~~~~~ 220 (790)
.=..++...|..++..
T Consensus 81 ~g~~~L~~~F~~lL~~ 96 (564)
T 2b1e_A 81 RSEAQLRVYFISILNS 96 (564)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHh
Confidence 8889999999999874
No 20
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=21.51 E-value=5.2e+02 Score=25.82 Aligned_cols=26 Identities=23% Similarity=0.478 Sum_probs=17.9
Q ss_pred cCchhHHHHHhhhchhhhHHHHHHHH
Q psy17363 53 LSNIDDVIMKMESNIKEMDEEIETVV 78 (790)
Q Consensus 53 L~~ld~l~~~l~~~~~~Ld~ei~~~v 78 (790)
|..||.-+..++.++..+-.++..+-
T Consensus 13 LQ~lD~~i~~l~~~~~~lp~el~~le 38 (256)
T 3na7_A 13 ISHLDKEIDSLEPLIREKRKDLDKAL 38 (256)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 66777777777777777766666553
No 21
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens}
Probab=20.36 E-value=1.2e+02 Score=28.92 Aligned_cols=45 Identities=29% Similarity=0.308 Sum_probs=19.6
Q ss_pred hhhHHHHHHHHHHhhhhhhhhhhhHHHHHHHhhhhhhhhhhhhhh
Q psy17363 93 EDSQKVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNL 137 (790)
Q Consensus 93 ~~~~~~i~~L~~~i~~Ik~~a~~sE~~V~~it~dIk~LD~AKrNL 137 (790)
.+++..|..|..++..++..-...+.--+.....|..|---|.|+
T Consensus 93 ~elq~ri~~L~~El~~~k~~~~k~~~e~r~L~Ekl~~lEKe~a~~ 137 (168)
T 3o0z_A 93 GDLQARITSLQEEVKHLKHNLEKVEGERKEAQDMLNHSEKEKNNL 137 (168)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333444444444444444444444444444444444444444433
Done!