RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17363
(790 letters)
>3ns4_A Vacuolar protein sorting-associated protein 53; GARP complex
component, helical bundle, membrane tethering C membrane
traffic, VPS51; HET: MSE; 2.90A {Saccharomyces
cerevisiae}
Length = 271
Score = 84.1 bits (207), Expect = 5e-18
Identities = 30/192 (15%), Positives = 60/192 (31%), Gaps = 24/192 (12%)
Query: 620 KYFTQFCVKFANSFIPKLVQHVFK-CKPLSTVG----------------AEQLLLDIHML 662
Y F K + V + + +P+ EQLLLD+ +L
Sbjct: 22 VYKWNFLDKVIDIMTTNFVSNTIRLLQPVPPFSLAGSKRKFETRTVVNIGEQLLLDLELL 81
Query: 663 KTVLLDLPSIGSQVVRKAP----ASFTKVVVKGMTKAEMILKLVMASAEPDICFVEQFCK 718
K + LP S + + + +KL+MA + + E + K
Sbjct: 82 KEIFHTLPESVSNDSDLRENTSYKRVKRHADNNIDQLLKFIKLLMAPLDSADDYYETYSK 141
Query: 719 LLPE-SDMTEFQRILDMKGLKT--NEKNNLINLFRPKNPSNTSSSLVAATNSTSSSRQDT 775
L D + +L +KG+ + + + + S + + D
Sbjct: 142 LTNNNPDSAVWSFVLALKGIPWDLALWKKMWSAYNLETDDTDEGSRPDSNRDLFIFKWDK 201
Query: 776 SSIQKLNNLIKK 787
+ + N + +
Sbjct: 202 VLLGQFENNLAR 213
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.6 bits (190), Expect = 1e-14
Identities = 101/585 (17%), Positives = 183/585 (31%), Gaps = 152/585 (25%)
Query: 3 DTE----EY-YNEIL--NYP--------KSVQDALKEIMPSTDVLD-------------- 33
D E +Y Y +IL K VQD K I+ ++
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 34 ----------------------DHDF--DSVQY-------INSLFPTEQS-LSNIDDVIM 61
++ F ++ + ++ ++ L N + V
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 62 KMESNIKEMDEEIETVVRSQS--------GVGQDGKKALE----DSQKVIMQLFSQVRDI 109
K + + ++ + GV GK + S KV ++ ++ +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL 187
Query: 110 KSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHS----LRTLIEQRQ 165
K S E V E+ + KLL N T+ +H + +HS LR L++ +
Sbjct: 188 NLKNCNSPETVLEMLQ--KLLYQIDPNWTSR---SDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 166 YGEIVMPLQGV--IEVMKHFQDSTDIP-QILELRSQVAQIQNTLSEQITQDLKNAFQNPS 222
Y ++ L V + F ++ +IL L ++ Q+ + LS T + +
Sbjct: 243 YENCLLVLLNVQNAKAWNAF----NLSCKIL-LTTRFKQVTDFLSAATTTHI---SLDHH 294
Query: 223 SGSFVPSKQIAEALRVVS-ILD------PKVKKNILEWFISL---QLSEYLVLFDESEDS 272
S + P E ++ LD P+ +S+ + + L +D +
Sbjct: 295 SMTLTPD----EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 273 AWLDKIDKRYAWFKKQLLHVEDK--FGTL--FPPHWQLSEKITLEF--CERTRSELGKIM 326
DK+ L E + F L FPP + L + +S++ ++
Sbjct: 351 N-CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-LLSLIWFDVIKSDVMVVV 408
Query: 327 SK--RKF--EIDVKLLLYAI-------QKTSNFEQLLEKRFADDETEGENKTKFDGIIGS 375
+K + E K +I + E L + D D +I
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIV-DHYNIPKTFDSDDLIPP 467
Query: 376 CFQNYLYIYI------------ESLDRNLSDLID-RFAEDSKQVLNNINETCETSAAPVL 422
Y Y +I +L R + +D RF E K ++ S L
Sbjct: 468 YLDQYFYSHIGHHLKNIEHPERMTLFRMV--FLDFRFLE-QKIRHDSTAWNASGSILNTL 524
Query: 423 PSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVL 467
L FYK + C E +V F L ++
Sbjct: 525 ---QQL-KFYKPYI--CDNDPKYERLVNAILDF---LPKIEENLI 560
Score = 67.6 bits (164), Expect = 1e-11
Identities = 105/705 (14%), Positives = 215/705 (30%), Gaps = 188/705 (26%)
Query: 7 YYNEILNYPKSVQD-ALKEIMP--STDVLDDHDFDSVQ-YINSLFPTEQSLSNIDDVIMK 62
+++ +++ K+I+ +D+ D VQ S+ E+ ID I+
Sbjct: 2 HHHHHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEE----IDH-IIM 56
Query: 63 MESNIKEMDEEIETVVRSQ-SGVGQDGKKALEDSQKVIM-QLFSQVRDIKSKAEKSEEMV 120
+ + T++ Q V + ++ L + K +M + ++ R E
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 121 REITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRT-LIEQRQYGEIVMPLQG---- 175
+ D ++ AK N++ L LR L+E R ++ + G
Sbjct: 117 DRLYNDNQVF--AKYNVS-------RLQP----YLKLRQALLELRPAKNVL--IDGVLGS 161
Query: 176 -----VIEVMKHFQDSTDIP-QI--LELRSQ-----VAQIQNTLSEQITQDLKNAFQNPS 222
++V ++ + +I L L++ V ++ L QI + + + S
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNW-TSRSDHS 220
Query: 223 SGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDSAWLDKIDKRY 282
S + I LR +L K +N L LVL +++ + +
Sbjct: 221 SNIKLRIHSIQAELR--RLLKSKPYENCL-----------LVL-LNVQNAKAWNAFN--- 263
Query: 283 AWFKKQLL------HVEDKFGTLFPPHWQLSEKITLEFCERTRSELGKIMSKRKFEIDVK 336
++L V D H L + ++ T E+ ++ K + +
Sbjct: 264 --LSCKILLTTRFKQVTDFLSAATTTHISL-DHHSMTL---TPDEVKSLLLK-YLDCRPQ 316
Query: 337 LLLYAIQKTSNFE-QLLEKRFAD-----DETEGENKTKFDGIIGSCFQNYLYIYIESLD- 389
L + T+ ++ + D D + N K II S + L+
Sbjct: 317 DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS--------LNVLEP 368
Query: 390 ---RNLSDLIDRFAEDSK---QVL-----NNINETCETSAAPVLPSCADLFMFYKKSLVQ 438
R + D + F + +L + I +K SLV+
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVN----------KLHKYSLVE 418
Query: 439 C--TQLSTGEPMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLI 496
+ + P + L + + H+ + + + ++ LI
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD-------------DLI 465
Query: 497 KDQRTKYTPQEQAKICCVLTTAEYCLETTQQLEQ-KLKEKV--DPN-LANKIDLSNEQDV 552
+Y + + L+ + E+ L V D L KI
Sbjct: 466 PPYLDQY-------FYSHIG---HHLKNIEHPERMTLFRMVFLDFRFLEQKI---RHDST 512
Query: 553 FHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHLKQSVPLIR 612
N S + L Q L+ Y I + + L+
Sbjct: 513 AWNASGSILNTL-QQLKF-------------------------YKPYICDNDPKYERLVN 546
Query: 613 TNLSSSRKYFTQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLL 657
L F+PK+ +++ K + ++ L
Sbjct: 547 AILD----------------FLPKIEENLICSKYTDLL---RIAL 572
Score = 36.0 bits (82), Expect = 0.052
Identities = 40/257 (15%), Positives = 80/257 (31%), Gaps = 62/257 (24%)
Query: 2 EDTEEYYNEILNYPKSVQDALKEIMPSTDVL----DDHDFDSVQYI-NSLF--------P 48
+ + ++ + +P S I T +L D V + N L P
Sbjct: 369 AEYRKMFDRLSVFPPSAH-----I--PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421
Query: 49 TEQSLSNIDDVIMKME---SNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQ 105
E ++S I + ++++ N + I D Q +S
Sbjct: 422 KESTIS-IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ----YFYSH 476
Query: 106 VRDIKSKAEKSEE--MVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQ 163
+ E E + R + D + L+ R+ +TA + L TL +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI---------LNTLQQL 527
Query: 164 RQYGEIVMP----LQGVIEVMKHFQDSTDIPQILE--LRSQVAQIQNTLSEQITQDLKNA 217
+ Y + + ++ + F +P+I E + S+ + L+ A
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDF-----LPKIEENLICSKYTDL-----------LRIA 571
Query: 218 FQNPSSGSFVPS-KQIA 233
F + KQ+
Sbjct: 572 LMAEDEAIFEEAHKQVQ 588
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 64.3 bits (156), Expect = 1e-10
Identities = 82/614 (13%), Positives = 169/614 (27%), Gaps = 258/614 (42%)
Query: 155 HSLRTLIEQRQYGEIVMPL-QGVIEVMKHFQDSTDIPQIL-----ELRSQVAQIQNTLSE 208
+S R L L G +E +P +L+ Q +I +E
Sbjct: 4 YSTRPLT-----------LSHGSLEH------VLLVPTASFFIASQLQEQFNKILPEPTE 46
Query: 209 QITQDLKNAFQNPSSGSFVPSKQIAEALR-VVSILDPK-------VKKNILEWFIS--LQ 258
D P++ P++ + + L V S+++P V L F + L+
Sbjct: 47 GFAAD-----DEPTT----PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE 97
Query: 259 LSE---YLVLFDESEDSAWLDKIDKRYAWFKK--QLLHVEDKFGTLFPPHWQLSEKITLE 313
++ + D+ + K K + +
Sbjct: 98 GNDIHALAAKLLQENDT----TLVKTKELIKNYITARIMAKR-----------------P 136
Query: 314 FCERTRSELGKIMSKRKFEIDVKLLLYAI---QKTSN--FEQLLEKRFADDETEGENKTK 368
F +++ S L + + + ++ AI Q ++ FE+L +
Sbjct: 137 FDKKSNSALFRAVGEGNAQL------VAIFGGQGNTDDYFEELRD--------------- 175
Query: 369 FDGIIGSCFQNYLY-IY-------IESLDRNLSDLIDRFAE---------DSKQVLNNIN 411
LY Y I+ LS+LI + + + L N +
Sbjct: 176 ------------LYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS 223
Query: 412 ETCETS---AAPVLPSCADLFMFYKKSLVQCTQ---------LSTGEPM----------- 448
T + + P+ SC + ++Q + GE
Sbjct: 224 NTPDKDYLLSIPI--SCPLIG------VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQ 275
Query: 449 -------VALATTFQQYLRHYAHKVL----------QQNV------------SKQAGQTA 479
+A +++ + K + + S + +
Sbjct: 276 GLVTAVAIAETDSWESFFVS-VRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGV 334
Query: 480 NTTLASVSNITRDLGLIK--DQRTKYTPQE-QAKI-------CCVLT---TAEYCLETTQ 526
+ + S+SN+T++ + ++ + P Q +I V++ + Y L
Sbjct: 335 PSPMLSISNLTQEQ-VQDYVNKTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNL-- 391
Query: 527 QLEQKLKEKVDPNLA-NKIDLSNEQDVFHNV---ISS---------CIQLLVQDL----- 568
L K K L ++I S + F N ++S L+ +DL
Sbjct: 392 TLR---KAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNV 448
Query: 569 -----ELAC------------------EPALTAMVKT---NWSSVESV----------GD 592
++ + + W + G
Sbjct: 449 SFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGG 508
Query: 593 QSGYVTAITSHLKQ 606
SG + +T K
Sbjct: 509 ASG-LGVLTHRNKD 521
Score = 60.1 bits (145), Expect = 2e-09
Identities = 56/310 (18%), Positives = 100/310 (32%), Gaps = 107/310 (34%)
Query: 6 EYYNEILNYPKSVQDALKEIMPSTDVLDDHDFDSVQYINSLFPTEQSLSNIDDVIMKMES 65
+ Y + QD D+H D+ + S+ +I + +
Sbjct: 1634 DLYK---TSK-AAQDVWNRA-------DNHFKDTYGF---------SILDI------VIN 1667
Query: 66 NIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEKSEEMVREITR 125
N + T+ G+ GK+ E+ +I F + D K K EK + + E +
Sbjct: 1668 NPVNL-----TIHFG----GEKGKRIRENYSAMI---FETIVDGKLKTEKIFKEINEHST 1715
Query: 126 DI-------KLLDTAKRN-----LTTAITCLNHL--------HMLVTGVHSLRTLIEQRQ 165
L T L G HSL
Sbjct: 1716 SYTFRSEKGLLSATQ--FTQPALTLMEKAAFEDLKSKGLIPADATFAG-HSL-------- 1764
Query: 166 YGEI--------VMPLQGVIEVMKH----FQDSTDIPQILELRSQVA-------QIQNTL 206
GE VM ++ ++EV+ + Q + +P+ RS ++ +
Sbjct: 1765 -GEYAALASLADVMSIESLVEVVFYRGMTMQVA--VPRDELGRSNYGMIAINPGRVAASF 1821
Query: 207 SEQITQDLKNAFQNPSSGSFV-------PSKQIA-----EAL-RVVSILDP-KVKK-NIL 251
S++ Q + +G V ++Q AL V ++L+ K++K +I+
Sbjct: 1822 SQEALQYVVERVGK-RTGWLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQKIDII 1880
Query: 252 EWFISLQLSE 261
E SL L E
Sbjct: 1881 ELQKSLSLEE 1890
Score = 43.9 bits (103), Expect = 2e-04
Identities = 66/409 (16%), Positives = 122/409 (29%), Gaps = 144/409 (35%)
Query: 37 FDSVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQ 96
F+ ++ L+ T L + D+I K E + ++R+ D++
Sbjct: 170 FEELR---DLYQTYHVL--VGDLI-------KFSAETLSELIRTTL-----------DAE 206
Query: 97 KVIMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITC-LNHL----HMLV 151
K +F+Q +I E T D L + I+C L + H +V
Sbjct: 207 K----VFTQGLNILEWLENPSN-----TPDKDYLLSI------PISCPLIGVIQLAHYVV 251
Query: 152 TGVHSLRTLIEQRQYGEIVMPLQGVIEVMK---------------HFQDSTDIPQILE-- 194
T + L GE+ L+G + F S + +
Sbjct: 252 T----AKLL--GFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR--KAITVL 303
Query: 195 ----LRSQVAQIQNTLSEQITQD-LKNAFQNPS-----SGSFVPSKQIAEALRVVSILDP 244
+R A +L I +D L+N PS S + +Q+ + + + P
Sbjct: 304 FFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN--LTQEQVQDYVNKTNSHLP 361
Query: 245 KVKKNILEWFISLQ-------LS---EYLVLFDESEDSAWLDKI------DKRYAWFKKQ 288
K+ + ISL +S + L + L K D+ F ++
Sbjct: 362 AGKQ-V---EISLVNGAKNLVVSGPPQSLYGLN-----LTLRKAKAPSGLDQSRIPFSER 412
Query: 289 LLHVEDKFGTLFPP-HWQLSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSN 347
L ++F + P H L + + + K + K + + T +
Sbjct: 413 KLKFSNRFLPVASPFHSHLLVPASDLINKD--------LVKNNVSFNAKDIQIPVYDTFD 464
Query: 348 FEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLI 396
G + G S+ + D I
Sbjct: 465 ---------------GSDLRVLSG---------------SISERIVDCI 483
Score = 37.3 bits (86), Expect = 0.024
Identities = 42/220 (19%), Positives = 67/220 (30%), Gaps = 75/220 (34%)
Query: 15 PKSVQDALK--EIMPS-----TDVLDDHDFDSVQYINSLFPTEQ----SLSNIDDVIMKM 63
P ++D+L+ E +PS +++ + D V NS P + SL N
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAK----- 375
Query: 64 ESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIK-------SKAEKS 116
N+ VV SG Q L L +R K S+ S
Sbjct: 376 --NL---------VV---SGPPQS----LY-------GLNLTLRKAKAPSGLDQSRIPFS 410
Query: 117 EEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGEIVMP---L 173
E ++ R L + H H+LV + + + +
Sbjct: 411 ERKLKFSNR---FL---------PVASPFHSHLLVPASD---LINKDLVKNNVSFNAKDI 455
Query: 174 QGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQD 213
Q I V D +D LR I + + I +
Sbjct: 456 Q--IPV-YDTFDGSD------LRVLSGSISERIVDCIIRL 486
>3fhn_A Protein transport protein TIP20; TIP20P, vesicle tethering,
endoplasmic reticulum, ER-golgi transport, membrane,
phosphoprotein; 3.00A {Saccharomyces cerevisiae}
Length = 706
Score = 58.7 bits (141), Expect = 6e-09
Identities = 73/688 (10%), Positives = 203/688 (29%), Gaps = 116/688 (16%)
Query: 39 SVQYINSLFPTEQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKV 98
++ +N + L NI+D I ++++ E+ +++ + +S + + + +
Sbjct: 2 AMGSMNGI----DDLLNINDRIKQVQNERNELASKLQNLKQSLA--------SNDTEVAL 49
Query: 99 IMQLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLR 158
+ + ++ + E E++ R D+++L+ ++ + L + L
Sbjct: 50 SEVIAQDIIEVGASVEGLEQL-RAKYGDLQILNKLEKVAVQQTQMQAGVDKLDSFERQLD 108
Query: 159 TLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIPQILELRSQ---------VAQIQNTLSEQ 209
L EQ + ++ + + + ++ + + + + ++
Sbjct: 109 ELAEQPPDQFTLDDVKALHSKLTSVFATVPQINNIDSQYAAYNKLKSKVTGKYNDVIIQR 168
Query: 210 ITQDLKNAFQN-------PSSGSFVPSKQIAEALR-----VVSILDPKVKKNILEWFISL 257
+ + N F + S + + LR + + +
Sbjct: 169 LATNWSNTFDQKLLEAQWDTQKFASTSVGLVKCLRENSTKLYQLSLLYLPLEEETQNGDS 228
Query: 258 QLSEYLVLFDESE---------------------DSAWLDKIDKRYAWFKKQLLHVEDKF 296
+ ++ ++ KI+ + + L K
Sbjct: 229 ERPLSRSNNNQEPVLWNFKSLANNFNVRFTYHFHATSSSSKIETYFQFLNDYLAENLYKC 288
Query: 297 GTLFPPHWQ--LSEKITLEFCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLEK 354
+F I +F + + F+ D+K L+ I + ++ L
Sbjct: 289 INIFHDDCNGLTKPVIHEQFINYVLQPIRDKVRSTLFQNDLKTLIVLISQILATDKNLLN 348
Query: 355 RFADDETEGENKTKFDGIIGSCFQNYLYIYIESLDRNLSDLIDRFAEDSKQVLNNINETC 414
F +Y + + SL + ++ +++ ++ N
Sbjct: 349 SF----------------------HYHGLGLVSLISD--EVWEKWINYEVEMANRQFIN- 383
Query: 415 ETSAAPVLPSCADLFMFYKKSLVQCTQLSTGEPMVALATTFQQYLRHYAHKVLQQNVSKQ 474
T P + F+ + + L N++
Sbjct: 384 ITKNPEDFPKSSQNFVKLINKIYDYLEPFYDLDFDLLVRYKLMTCSLI-----FMNLTSS 438
Query: 475 AGQTANTTLASVSNITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKE 534
T + T++ L + L + + L
Sbjct: 439 YLDYILTVDSLNETRTKEQELYQ-------------TMAKLQHVNFVYRKIKSLSSNFIF 485
Query: 535 KVDPNLANKIDLSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKT---------NWS 585
++ N + +F NV + + + D++ + + ++K WS
Sbjct: 486 IQLTDIVNSTESKKYNSLFQNVENDYEKAMSTDMQNSIVHRIQKLLKETLRNYFKISTWS 545
Query: 586 SVESVGDQS-GYVTAITSHLKQSVPLIRTNLSSSRKY------FTQFCVKFANSFIPKLV 638
++E D++ G + ++ L S+ ++R ++ + + N +
Sbjct: 546 TLEMSVDENIGPSSVPSAELVNSINVLRRLINKLDSMDIPLAISLKVKNELLNVIVNYFT 605
Query: 639 QHVFKCKPLSTVGAEQLLLDIHMLKTVL 666
+ + K + G Q L D L ++L
Sbjct: 606 ESILKLNKFNQNGLNQFLHDFKSLSSIL 633
>2a2f_X Exocyst complex component SEC15; all helical structure, protein
transport; 2.50A {Drosophila melanogaster}
Length = 325
Score = 32.7 bits (74), Expect = 0.49
Identities = 22/179 (12%), Positives = 51/179 (28%), Gaps = 15/179 (8%)
Query: 489 ITRDLGLIKDQRTKYTPQEQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKID--- 545
+TR + ++ ++ +Y + L++ + + +
Sbjct: 117 LTRSFSGCLSVVFRQPSITLTQLIQIIIDTQYLEKAGPFLDEFVCHMTNTERSVSQTPSA 176
Query: 546 -LSNEQDVFHNVISSCIQLLVQDLELACEPALTAMVKTNWSSVESVGDQSGYVTAITSHL 604
+ + I + + +W VE G S ++T + S+L
Sbjct: 177 MFHVARQDAEKQVGLRICSKIDEFFELSA--------YDWLLVEPPGIASAFITDMISYL 228
Query: 605 KQSVPLIRTNLSSSRKYF-TQFCVKFANSFIPKLVQHVFKCKPLSTVGAEQLLLDIHML 662
K + L + + A + K +ST Q+ LD+
Sbjct: 229 KSTFDSFAFKLPHIAQAACRRTFEHIAEKIYSIMYDE--DVKQISTGALTQINLDLMQC 285
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 1.2
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 385 IESLDRNLSDLIDRFAEDSKQVLNNINETCE 415
++ L +L +A+DS L I T E
Sbjct: 22 LKKLQASLK----LYADDSAPAL-AIKATME 47
Score = 28.4 bits (62), Expect = 5.7
Identities = 9/30 (30%), Positives = 14/30 (46%), Gaps = 5/30 (16%)
Query: 523 ETTQQLEQKLKEKVD---PNLANKIDLSNE 549
+ ++L+ LK D P LA I + E
Sbjct: 20 QALKKLQASLKLYADDSAPALA--IKATME 47
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 30.5 bits (69), Expect = 2.7
Identities = 24/170 (14%), Positives = 57/170 (33%), Gaps = 22/170 (12%)
Query: 50 EQSLSNIDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDI 109
+S+ + + +E+ I ++ +I+ + K+L + L
Sbjct: 913 ARSVERYKKLHIGLENKIMQLQRKIDEQNKE--------YKSLLEKMN---NLEITYSTE 961
Query: 110 KSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLN-HLHMLVTGVHSLRTLIE--QRQY 166
K E +R + K +L I L LH T ++ + + +
Sbjct: 962 TEKLRSDVERLRMSEEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHET 1021
Query: 167 GEIVMPLQGVIEVMKHFQDSTDIPQILELRSQVAQIQNTLSEQITQDLKN 216
++V L+ ++K + EL ++ ++E + + L
Sbjct: 1022 EQLVSELKEQNTLLKT--------EKEELNRRIHDQAKEITETMEKKLVE 1063
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 29.7 bits (66), Expect = 2.9
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 11/64 (17%)
Query: 67 IKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAE---KSEEMVREI 123
++E+D + + + KK LE+ + + QV K+K + ++
Sbjct: 98 LQELDAASK---VMEQEWREKAKKDLEEWNQ---RQSEQVE--KNKINNRIADKAFYQQP 149
Query: 124 TRDI 127
DI
Sbjct: 150 DADI 153
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity
clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA;
2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB:
1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Length = 343
Score = 29.8 bits (67), Expect = 3.2
Identities = 21/160 (13%), Positives = 40/160 (25%), Gaps = 34/160 (21%)
Query: 213 DLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDS 272
D F + S S+Q L + + + + +L L L++
Sbjct: 60 DWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNK--- 116
Query: 273 AWLDKIDKRYAWFKKQLLHVEDKFGTLFP---------PHW----------QLSEKITLE 313
L K + AWF P W +L +
Sbjct: 117 --LSKAQENAAWFTAL-----ANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQV 169
Query: 314 FCERTRSELGKIMSKRKFEIDVKLLLYAIQKTSNFEQLLE 353
C L + ++ +L L ++ +
Sbjct: 170 LCYCYEGNLLALAQ----ALE-RLSLLWPDGKLTLPRVEQ 204
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp
loader, DNA replication, AAA+ ATPase, transferase; HET:
DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Length = 140
Score = 28.8 bits (64), Expect = 3.8
Identities = 14/75 (18%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 213 DLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESEDS 272
D F + S S+Q L + + + + +L L L++
Sbjct: 60 DWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGN---- 115
Query: 273 AWLDKIDKRYAWFKK 287
L K + AWF
Sbjct: 116 -KLSKAQENAAWFTA 129
>3mgd_A Predicted acetyltransferase; structural genomics, PSI-2, protein
structure initiative, no structural genomics consortium,
NESG; HET: ACO; 1.90A {Clostridium acetobutylicum}
Length = 157
Score = 28.6 bits (64), Expect = 4.5
Identities = 6/45 (13%), Positives = 17/45 (37%), Gaps = 5/45 (11%)
Query: 188 DIPQILELRSQVAQ-----IQNTLSEQITQDLKNAFQNPSSGSFV 227
DI ++ +R + + +++T+ N N ++
Sbjct: 11 DISLLVSIRKRQLIDEGIEPNIDIDKELTRYFNNKLANNLLVEWI 55
>3l22_A SUSD superfamily protein; structural genomics, joint center
structural genomics, JCSG, protein structure initiative;
HET: MSE; 2.05A {Bacteroides fragilis}
Length = 441
Score = 29.0 bits (65), Expect = 5.9
Identities = 14/68 (20%), Positives = 24/68 (35%), Gaps = 13/68 (19%)
Query: 184 QDSTDIPQILELRSQVAQIQ---NTLSE---QITQDLKNAFQ-----NPSSGSFVPSKQI 232
D+ +P L + +T+ + I DL+N N +G ++
Sbjct: 143 PDAKSVPLRLTAEAGTENNNMPRSTVKQIYEHILSDLENISALDTEVNTYTGVTHATQAA 202
Query: 233 AEAL--RV 238
A L RV
Sbjct: 203 ANMLKMRV 210
>1bg1_A Protein (transcription factor STAT3B); protein-DNA complex,
cytokine activation, complex (transcription factor/DNA),
transcription/DNA complex; HET: DNA PTR; 2.25A {Mus
musculus} SCOP: a.47.1.1 b.2.5.5 d.93.1.1 PDB: 3cwg_A
Length = 596
Score = 29.0 bits (64), Expect = 6.4
Identities = 26/195 (13%), Positives = 77/195 (39%), Gaps = 26/195 (13%)
Query: 50 EQSLSNIDDVIMKMESNIKEMDEEIET-VVRSQSGVGQDGKKALEDSQKVIMQLFSQVRD 108
EQ L ++ + +E +K ++ + ++ Q + L + + + + +++
Sbjct: 19 EQHLQDVRKRVQDLEQKMKVVENLQDDFDFNYKTLKSQGDMQDLNGNNQSVTR--QKMQQ 76
Query: 109 IKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTLIEQRQYGE 168
++ ++M R I ++ L ++ + ++ +T L ++Q
Sbjct: 77 LEQMLTALDQMRRSIVSELAGL----------LSAMEYVQKTLTDEE-LADWKRRQQIAC 125
Query: 169 IVMPLQGVIEVMKH---------FQDSTDIPQILELRSQVAQIQNTLSEQ---ITQDLKN 216
I P ++ +++ Q I ++ EL+ +V+ + + + + + +
Sbjct: 126 IGGPPNICLDRLENWITSLAESQLQTRQQIKKLEELQQKVSYKGDPIVQHRPMLEERIVE 185
Query: 217 AFQNPSSGSFVPSKQ 231
F+N +FV +Q
Sbjct: 186 LFRNLMKSAFVVERQ 200
>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold,
electron transfer protein, metal binding protein,
electron transport; NMR {Thermus thermophilus}
Length = 172
Score = 28.1 bits (63), Expect = 8.1
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 8/41 (19%)
Query: 237 RVVSILDPKVKKNILEWFISL--------QLSEYLVLFDES 269
R L PK ++ + F+S+ Y F S
Sbjct: 60 RAYEKLPPKAQERVQVIFVSVDPERDPPEVADRYAKAFHPS 100
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.363
Gapped
Lambda K H
0.267 0.0686 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,026,934
Number of extensions: 648679
Number of successful extensions: 1582
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1557
Number of HSP's successfully gapped: 36
Length of query: 790
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 689
Effective length of database: 3,881,772
Effective search space: 2674540908
Effective search space used: 2674540908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)