RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17363
         (790 letters)



>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 35.1 bits (80), Expect = 0.030
 Identities = 56/487 (11%), Positives = 142/487 (29%), Gaps = 64/487 (13%)

Query: 101 QLFSQVRDIKSKAEKSEEMVREIT------RDIKLLDTAKRNLTTAITCLNHLHMLVTGV 154
              S +R+ KSK  + + + +E+       +  K LD   +     +  L  + +L   +
Sbjct: 7   VFISDIRNCKSKEAEIKRINKELANIRSKFKGDKALDGYSK--KKYVCKLLFIFLLGHDI 64

Query: 155 HSLRTLIEQRQYGEIVMPLQGVIEVMKHFQDSTDIP--QILEL-RSQVAQIQNTLSEQIT 211
                               G +E +     S      QI  L  S +    + L   I 
Sbjct: 65  DF------------------GHMEAVNLLS-SNRYTEKQIGYLFISVLVNSNSELIRLIN 105

Query: 212 QDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWFISLQLSEYLVLFDESED 271
             +KN   + +         +  AL  ++        N+    ++   +  +     + D
Sbjct: 106 NAIKNDLASRN------PTFMGLALHCIA--------NVGSREMAEAFAGEIPKILVAGD 151

Query: 272 SAWLDKIDKRYAWFKKQLLHVEDKFGTLFPPHWQLSEKITL-----EFCERTRSELGKIM 326
           +    K           LL +      L P     S  + L            + L   +
Sbjct: 152 TMDSVKQSAALC-----LLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTL 206

Query: 327 SKRKFEIDVKLLLYAIQKTSNFEQLLEKRFADDETEGENKTKFDGIIGSCFQNYLYIYIE 386
           +++  E     +  A+ + S           D              +    Q Y      
Sbjct: 207 AQKNPEEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDP 266

Query: 387 SLDRNLSDLIDRFAEDSKQVLNNINETCETSAAPVLPSCADLFMFYKKSLVQCTQLSTGE 446
           ++   L++ ++     +++   +       +   VL     L + +        +     
Sbjct: 267 AVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRAC--N 324

Query: 447 PMVALATTFQQYLRHYAHKVLQQNVSKQAGQTANTTLASVSNITRDLGLIKDQRTKYTPQ 506
            +       +  LR+ A + +          +  +  A  ++I   +  +K +R     Q
Sbjct: 325 QLGQFLQHRETNLRYLALESMCTLA-----SSEFSHEAVKTHIETVINALKTERDVSVRQ 379

Query: 507 EQAKICCVLTTAEYCLETTQQLEQKLKEKVDPNLANKI--DLSNEQDVFHNVISSCIQLL 564
               +   +       +   ++   L+   D ++  +I   ++   + +    +  +  +
Sbjct: 380 RAVDLLYAMCDRSNAQQIVAEMLSYLET-ADYSIREEIVLKVAILAEKYAVDYTWYVDTI 438

Query: 565 VQDLELA 571
           +  + +A
Sbjct: 439 LNLIRIA 445


>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma
           mansoni) [TaxId: 6183]}
          Length = 208

 Score = 30.2 bits (68), Expect = 0.73
 Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 2/71 (2%)

Query: 101 QLFSQVRDIKSKAEKSEEMVREITRDIKLLDTAKRNLTTAITCLNHLHMLVTGVHSLRTL 160
           QLF +V +I    + S     EI    ++ ++ +  L  +    + + M  + V      
Sbjct: 5   QLFEKVVEILKPFDLSVVDYEEICD--RMGESMRLGLQKSTNEKSSIKMFPSYVTKTPNG 62

Query: 161 IEQRQYGEIVM 171
            E   +  + +
Sbjct: 63  TETGNFLALDL 73


>d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III,
           N-domain {Escherichia coli [TaxId: 562]}
          Length = 140

 Score = 28.4 bits (63), Expect = 1.9
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 5/93 (5%)

Query: 195 LRSQVAQIQNTLSEQITQDLKNAFQNPSSGSFVPSKQIAEALRVVSILDPKVKKNILEWF 254
             +Q  +  +T S     D    F    + S   S+Q    L   +  +  + + +L   
Sbjct: 42  AAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLT 101

Query: 255 ISLQLSEYLVLFDESEDSAWLDKIDKRYAWFKK 287
             L     L++         L K  +  AWF  
Sbjct: 102 GLLHDDLLLIVRGNK-----LSKAQENAAWFTA 129


>d1tdpa_ a.29.8.1 (A:) Carnobacteriocin B2 immunity protein
           {Carnobacterium piscicola [TaxId: 2751]}
          Length = 111

 Score = 26.9 bits (59), Expect = 3.7
 Identities = 6/36 (16%), Positives = 16/36 (44%)

Query: 566 QDLELACEPALTAMVKTNWSSVESVGDQSGYVTAIT 601
           +D E+     L+ +V      + +   ++ Y+  I+
Sbjct: 17  KDPEVKANEFLSKLVVQCAGKLTASNSENSYIEVIS 52


>d1tuaa1 d.51.1.1 (A:1-84) Hypothetical protein APE0754 {Aeropyrum
           pernix [TaxId: 56636]}
          Length = 84

 Score = 25.5 bits (56), Expect = 8.2
 Identities = 11/82 (13%), Positives = 23/82 (28%), Gaps = 18/82 (21%)

Query: 56  IDDVIMKMESNIKEMDEEIETVVRSQSGVGQDGKKALEDSQKVIMQLFSQVRDIKSKAEK 115
           +  VI        E+     TV+   +       +   +                    K
Sbjct: 14  LGAVIGPRGEVKAEIMRRTGTVITVDTENSMVIVEPEAEG------------IPPVNLMK 61

Query: 116 SEEMVREITRD------IKLLD 131
           + E+V+ I+         +LL+
Sbjct: 62  AAEVVKAISLGFPPEKAFRLLE 83


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.131    0.363 

Gapped
Lambda     K      H
   0.267   0.0646    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,663,611
Number of extensions: 121879
Number of successful extensions: 367
Number of sequences better than 10.0: 1
Number of HSP's gapped: 366
Number of HSP's successfully gapped: 14
Length of query: 790
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 697
Effective length of database: 1,130,706
Effective search space: 788102082
Effective search space used: 788102082
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.9 bits)