Query psy17364
Match_columns 312
No_of_seqs 186 out of 1698
Neff 6.6
Searched_HMMs 29240
Date Fri Aug 16 20:30:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17364.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17364hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xb2_B EF-TS, elongation facto 100.0 1.8E-83 6.3E-88 599.6 31.4 280 21-306 2-285 (291)
2 3avx_A Elongation factor TS, e 100.0 9.1E-68 3.1E-72 564.3 13.9 243 21-309 3-276 (1289)
3 1aip_C EF-TS, elongation facto 100.0 2.2E-55 7.7E-60 386.3 17.7 157 23-183 3-195 (196)
4 1tfe_A Elongation factor TS; 1 100.0 3.5E-29 1.2E-33 212.0 8.6 107 79-185 1-143 (145)
5 1tfe_A Elongation factor TS; 1 99.9 1.4E-24 4.8E-29 183.8 6.4 105 185-299 3-145 (145)
6 1aip_C EF-TS, elongation facto 99.9 1.1E-23 3.8E-28 185.0 7.6 100 186-295 58-195 (196)
7 2cp9_A EF-TS, EF-TSMT, elongat 99.8 2.9E-20 9.9E-25 135.3 5.4 59 20-82 6-64 (64)
8 1xb2_B EF-TS, elongation facto 99.6 1.7E-15 5.6E-20 141.3 7.9 121 52-185 140-276 (291)
9 3avx_A Elongation factor TS, e 99.3 4.7E-13 1.6E-17 144.0 4.2 112 58-185 118-264 (1289)
10 1wj7_A Hypothetical protein (R 97.5 0.00011 3.6E-09 58.1 5.3 37 25-61 41-77 (104)
11 1z96_A DNA-damage, UBA-domain 97.5 0.00015 5.3E-09 46.9 5.2 35 24-59 5-39 (40)
12 2g3q_A Protein YBL047C; endocy 97.2 0.00032 1.1E-08 46.4 4.2 38 23-61 4-41 (43)
13 2dak_A Ubiquitin carboxyl-term 97.1 0.00087 3E-08 48.1 5.5 41 21-62 7-47 (63)
14 2dah_A Ubiquilin-3; UBA domain 96.9 0.0022 7.5E-08 44.7 6.2 39 22-61 8-47 (54)
15 2knz_A Ubiquilin-4; cytoplasm, 96.9 0.0013 4.6E-08 45.6 4.8 37 24-61 12-49 (53)
16 2jy5_A Ubiquilin-1; UBA, alter 96.8 0.0017 6E-08 44.8 5.1 39 21-60 10-49 (52)
17 1wji_A Tudor domain containing 96.8 0.0023 8E-08 46.0 5.6 41 21-62 7-47 (63)
18 1tr8_A Conserved protein (MTH1 96.7 0.002 6.9E-08 50.8 5.1 39 21-59 63-101 (102)
19 1whc_A RSGI RUH-027, UBA/UBX 3 96.7 0.0016 5.6E-08 46.9 4.1 42 20-62 6-48 (64)
20 1vej_A Riken cDNA 4931431F19; 96.7 0.0043 1.5E-07 46.1 6.5 38 23-61 29-67 (74)
21 2bwb_A Ubiquitin-like protein 96.6 0.0032 1.1E-07 42.4 5.2 36 24-60 8-44 (46)
22 2dna_A Unnamed protein product 96.6 0.0045 1.5E-07 45.0 5.8 38 24-61 20-57 (67)
23 2dag_A Ubiquitin carboxyl-term 96.5 0.0045 1.6E-07 45.9 5.7 41 21-62 7-48 (74)
24 1wr1_B Ubiquitin-like protein 96.5 0.0047 1.6E-07 43.7 5.4 37 24-61 18-55 (58)
25 1ify_A HHR23A, UV excision rep 96.4 0.0033 1.1E-07 42.8 4.2 38 23-61 8-45 (49)
26 2dai_A Ubadc1, ubiquitin assoc 96.4 0.0062 2.1E-07 46.2 5.9 40 21-61 27-66 (83)
27 2cpw_A CBL-interacting protein 96.4 0.0046 1.6E-07 44.5 4.9 39 22-61 18-57 (64)
28 1wiv_A UBP14, ubiquitin-specif 96.3 0.0081 2.8E-07 44.4 5.8 40 21-61 27-66 (73)
29 1vg5_A RSGI RUH-014, rhomboid 96.1 0.0092 3.1E-07 44.1 5.3 40 21-61 27-66 (73)
30 1veg_A NEDD8 ultimate buster-1 96.0 0.014 4.9E-07 44.2 6.3 42 20-62 26-67 (83)
31 2crn_A Ubash3A protein; compac 95.9 0.0068 2.3E-07 43.6 4.0 42 20-62 6-48 (64)
32 2ekk_A UBA domain from E3 ubiq 95.9 0.013 4.5E-07 39.3 4.9 40 20-61 6-45 (47)
33 1vek_A UBP14, ubiquitin-specif 95.8 0.019 6.5E-07 43.5 6.3 42 20-62 26-68 (84)
34 2lbc_A Ubiquitin carboxyl-term 95.4 0.024 8.2E-07 45.9 5.8 39 22-61 77-115 (126)
35 2dkl_A Trinucleotide repeat co 95.4 0.019 6.6E-07 43.6 4.8 39 22-61 20-58 (85)
36 1wgn_A UBAP1, ubiquitin associ 95.2 0.013 4.5E-07 41.7 3.2 37 24-61 20-56 (63)
37 1oai_A Nuclear RNA export fact 95.2 0.042 1.4E-06 38.8 5.8 41 22-62 6-46 (59)
38 2cwb_A Chimera of immunoglobul 95.1 0.025 8.5E-07 44.9 4.9 38 24-61 67-104 (108)
39 3e21_A HFAF1, FAS-associated f 95.1 0.038 1.3E-06 36.9 4.9 34 24-57 6-40 (45)
40 4ae4_A Ubiquitin-associated pr 94.9 0.02 6.8E-07 46.2 3.9 39 23-62 76-114 (118)
41 2jp7_A MRNA export factor MEX6 94.8 0.045 1.6E-06 38.4 5.0 39 23-61 6-44 (57)
42 2lbc_A Ubiquitin carboxyl-term 94.5 0.038 1.3E-06 44.7 4.7 40 22-62 2-42 (126)
43 2lva_A Ubiquitin carboxyl-term 93.5 0.0065 2.2E-07 49.0 0.0 39 24-62 19-58 (129)
44 1vdl_A Ubiquitin carboxyl-term 94.3 0.069 2.4E-06 39.3 5.0 40 23-62 24-64 (80)
45 1dv0_A DNA repair protein HHR2 93.7 0.027 9.1E-07 37.9 1.7 38 23-61 4-41 (47)
46 4ae4_A Ubiquitin-associated pr 93.3 0.076 2.6E-06 42.7 4.2 40 22-62 7-46 (118)
47 1v92_A NSFL1 cofactor P47; 3-h 93.0 0.11 3.8E-06 34.2 4.0 39 23-61 5-43 (46)
48 2dam_A ETEA protein; KIAA0887, 92.3 0.22 7.5E-06 35.9 5.0 39 23-61 18-57 (67)
49 2cp8_A NEXT to BRCA1 gene 1 pr 91.5 0.3 1E-05 33.8 4.8 40 22-61 8-47 (54)
50 2ooa_A E3 ubiquitin-protein li 91.0 0.62 2.1E-05 31.9 5.8 39 22-61 10-48 (52)
51 2dal_A Protein KIAA0794; FAS a 90.6 0.41 1.4E-05 33.8 5.0 39 23-61 15-53 (62)
52 2d9s_A CBL E3 ubiquitin protei 90.2 0.38 1.3E-05 33.1 4.2 40 22-62 8-47 (53)
53 2oo9_A E3 ubiquitin-protein li 90.0 0.38 1.3E-05 32.0 4.0 29 34-62 14-42 (46)
54 1wgl_A TOLL-interacting protei 88.4 1 3.5E-05 31.6 5.6 42 20-61 6-48 (59)
55 2juj_A E3 ubiquitin-protein li 87.5 0.55 1.9E-05 32.5 3.5 40 22-62 6-45 (56)
56 1otr_A Protein CUE2; protein-p 87.4 0.9 3.1E-05 30.7 4.6 37 25-61 6-43 (49)
57 2dzl_A Protein FAM100B; UBA-li 86.8 0.96 3.3E-05 32.4 4.8 37 25-61 19-55 (66)
58 1ctf_A Ribosomal protein L7/L1 80.0 1.6 5.3E-05 32.1 3.5 37 22-58 18-60 (74)
59 1oqy_A HHR23A, UV excision rep 78.9 0.86 2.9E-05 43.4 2.3 38 23-61 168-205 (368)
60 3k9o_A Ubiquitin-conjugating e 78.9 2.2 7.4E-05 36.9 4.7 36 24-60 164-199 (201)
61 2dhy_A CUE domain-containing p 75.9 6.6 0.00023 28.1 5.8 41 22-62 17-58 (67)
62 1jkg_B TAP; NTF2-like domain, 74.6 0.62 2.1E-05 41.9 0.0 38 24-61 199-236 (250)
63 3k6g_A Telomeric repeat-bindin 74.3 7.3 0.00025 30.3 5.9 40 22-61 12-51 (111)
64 2cos_A Serine/threonine protei 70.3 3.5 0.00012 28.3 3.0 40 21-61 7-47 (54)
65 3e46_A Ubiquitin-conjugating e 61.4 10 0.00035 34.1 5.2 36 24-60 216-251 (253)
66 2zjq_5 50S ribosomal protein L 60.2 7.5 0.00026 31.2 3.6 27 22-48 67-93 (122)
67 1dd3_A 50S ribosomal protein L 59.7 6.2 0.00021 31.9 3.1 29 22-50 69-97 (128)
68 2j01_L 50S ribosomal protein L 59.2 7.8 0.00027 31.2 3.5 27 22-48 70-96 (125)
69 1q02_A Sequestosome 1; helical 55.6 8.2 0.00028 26.3 2.6 41 21-61 5-49 (52)
70 3ihp_A Ubiquitin carboxyl-term 55.4 13 0.00043 39.1 5.4 43 21-64 718-760 (854)
71 1oqy_A HHR23A, UV excision rep 54.8 5.3 0.00018 37.9 2.2 40 22-62 324-363 (368)
72 2qsf_X RAD23, UV excision repa 51.0 20 0.0007 30.3 5.0 37 24-61 131-167 (171)
73 2ftc_E L12MT, MRP-L12, 39S rib 48.8 28 0.00094 28.4 5.3 26 23-48 81-107 (137)
74 4dbg_B Ring finger protein 31; 47.0 18 0.00061 30.3 3.9 28 35-62 114-141 (162)
75 3bq3_A Defective in cullin ned 46.0 23 0.0008 32.0 4.9 40 23-62 15-54 (270)
76 3sgf_J 50S ribosomal protein L 42.0 5.4 0.00018 32.0 0.0 27 23-49 66-92 (121)
77 1nri_A Hypothetical protein HI 39.3 8.2 0.00028 35.2 0.8 35 27-61 248-282 (306)
78 2e2a_A Protein (enzyme IIA); h 36.9 30 0.001 26.8 3.6 32 30-61 13-45 (105)
79 1wcr_A PTS system, N, N'-diace 36.2 32 0.0011 26.6 3.6 28 34-61 15-43 (103)
80 2di0_A Activating signal coint 33.7 84 0.0029 22.6 5.3 39 23-61 13-52 (71)
81 3k1s_A PTS system, cellobiose- 33.2 37 0.0013 26.5 3.6 34 28-61 13-47 (109)
82 3l8r_A PTCA, putative PTS syst 31.7 40 0.0014 26.8 3.6 34 28-61 28-62 (120)
83 3hh0_A Transcriptional regulat 25.7 95 0.0032 24.9 5.0 38 24-62 51-88 (146)
84 3gp4_A Transcriptional regulat 23.1 2.1E+02 0.0071 22.7 6.6 40 24-64 49-91 (142)
85 2jml_A DNA binding domain/tran 22.6 66 0.0022 22.8 3.1 26 24-49 53-78 (81)
86 4dbg_B Ring finger protein 31; 22.4 1.1E+02 0.0039 25.4 4.8 38 25-62 59-101 (162)
87 3gpv_A Transcriptional regulat 22.3 1.9E+02 0.0066 23.0 6.3 42 24-66 63-107 (148)
88 3tzl_A Tryptophanyl-tRNA synth 22.2 1.5E+02 0.005 27.2 6.2 26 23-48 244-272 (322)
89 2dae_A KIAA0733 protein; mitog 21.7 1.4E+02 0.0048 21.6 4.5 42 20-61 7-49 (75)
No 1
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=100.00 E-value=1.8e-83 Score=599.60 Aligned_cols=280 Identities=40% Similarity=0.678 Sum_probs=238.1
Q ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcHHHHHhhhhhccCCceEEEEeCCcEEEEEEEec
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNC 100 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~~~k~G~~~A~Kr~~R~t~eG~V~~~~~~~~gvlvElnc 100 (312)
++|+++||+||++||+|||||||||+|+|||+|+|++|||++++++|+++|.||++|.|+||+|+++++++.||||||||
T Consensus 2 ~~ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~~~~gvlvEvNc 81 (291)
T 1xb2_B 2 ASSKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTVLVEVNC 81 (291)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEETTEEEEEEEEE
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEcCCEEEEEEEec
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHhcCCCCCCCCcchhh-hhcCHHHHhcccCCCCCC--HHHHHHHHHHhhCCceEEEEE
Q psy17364 101 ETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAK-VFLDTAQLQSLAGPENKS--LADHVAILISSVGENLVLRRA 177 (312)
Q Consensus 101 ETDFVArne~F~~la~~ia~~i~a~~p~~~~~~g~i~k-~~~~~~~l~q~~~~~~~T--V~d~i~~~i~~iGEnI~l~rf 177 (312)
||||||||+.|+.|+++||+++++..|...+. ....+ -+.+.+.|.+.+.+++.| |+|.+.++++++||||.|+||
T Consensus 82 ETDFVArN~~F~~l~~~ia~~~~~~~~~~~~~-~~~~~~~~~~~e~l~~~~~~~~~t~tv~d~i~~~ia~iGEni~lrR~ 160 (291)
T 1xb2_B 82 ETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQ-LSTYSKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRA 160 (291)
T ss_dssp SCHHHHTSHHHHHHHHHHHHHHHHHHTTSCCC-SSSCEEEEECHHHHHTSBCCSSSCSBHHHHHHHHHHHHCSCEEEEEE
T ss_pred ccceeeCCHHHHHHHHHHHHHHHhcCCccccc-ccccccccCCHHHHhhcccccCcchhHHHHHHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999987752211 11111 123677888777767778 999999999999999999999
Q ss_pred EEEEeCCceeEEEeecCCCCCC-CCCCCCccEEEEEEEeecCCCccccchHHHHHHHHHHHhhcCCcccCCCCCCCCCCC
Q psy17364 178 ACVTVNEDHDVAGFTHPSPGLE-HTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSEEDTPNEDP 256 (312)
Q Consensus 178 ~~~~~geg~~~~~Y~H~~~~~~-~~~~~~Gkig~lV~~~~~~~~~~~~~~~~~ak~iAmhi~a~~P~~l~~~~~kp~~~~ 256 (312)
.++..++++.+++|+|++..+. .+.+.+||||+||.+++.++. ..+.+++|+||||||||+|.||++++ . .+.|
T Consensus 161 ~~~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~~---~~l~~~ak~iAmHIaA~~P~~l~~~~-v-~~gf 235 (291)
T 1xb2_B 161 AWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELK---ANLADLGRRLGQHVVGMAPLSVGSLD-D-EPGG 235 (291)
T ss_dssp EEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCG---GGCHHHHHHHHHHHHHHCCSBCCCTT-S-CCCG
T ss_pred HHhcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCcc---chHHHHHHHHHHHHHhcCCcccCHHH-h-hccc
Confidence 9999777789999999985421 234678999999999985321 12367999999999999999999864 2 3458
Q ss_pred cccccccccccccCCCCcHHHHHHHcCCceeeEEEEEecCccccccchHh
Q psy17364 257 EEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCEESEETQT 306 (312)
Q Consensus 257 ~~e~~Ll~Q~fi~d~~~tV~~~l~~~~~~v~~F~r~~vGe~ie~~~~~~~ 306 (312)
|+|+|||+|+|++||++||+|||++.+++|++|+||+||||||++++|..
T Consensus 236 ~~E~~Ll~Q~fv~D~~~tV~~~l~~~~i~V~~F~RfevGEgiek~~~~~~ 285 (291)
T 1xb2_B 236 EAETKMLSQPYLLDPSITLGQYVQPHGVSVVDFVRFECGEGEDAADAELE 285 (291)
T ss_dssp GGCCBGGGSBCTTCTTSBHHHHHGGGTCEEEEEEEEETTCC---------
T ss_pred hhheeeccCcccCCCCcCHHHHHHhCCCEEEEEEEEEecCcccccccccc
Confidence 99999999999999999999999999999999999999999999999864
No 2
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=9.1e-68 Score=564.30 Aligned_cols=243 Identities=28% Similarity=0.492 Sum_probs=223.6
Q ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcHHHHHhhhhhccCCceEEEEeCCcEEEEEEEec
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAVEGKHATMVEFNC 100 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~~~k~G~~~A~Kr~~R~t~eG~V~~~~~~~~gvlvElnc 100 (312)
.+++++||+||++||||||||||||+|+|||+|+|++|||+ +|+++|.||++|.|+||+|+++++++.||||||||
T Consensus 3 ~ita~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRk----kG~akAaKka~R~aaEGlv~~~i~~~~g~lvEvNc 78 (1289)
T 3avx_A 3 EITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRK----SGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNC 78 (1289)
T ss_dssp CSCCSCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHT----THHHHHHHHTTSCCCEEEEEEEECSSEEEEEEEEE
T ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH----hCcchhhHhcCccccCceEEEEEcCCEEEEEEEEc
Confidence 38999999999999999999999999999999999999998 69999999999999999999999999999999999
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHhcCCCCCCCCcchhhhhcCHHHHhcccCCCCCCHHHHHHHHHHhhCCceEEEEEEEE
Q psy17364 101 ETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAKVFLDTAQLQSLAGPENKSLADHVAILISSVGENLVLRRAACV 180 (312)
Q Consensus 101 ETDFVArne~F~~la~~ia~~i~a~~p~~~~~~g~i~k~~~~~~~l~q~~~~~~~TV~d~i~~~i~~iGEnI~l~rf~~~ 180 (312)
||||||||+.|++|+++||.++++.++. +.+.|.+. |+|.+.++++++||||+|+||.++
T Consensus 79 ETDFVAkn~~F~~l~~~ia~~~~~~~~~-------------~~e~l~~~-------v~~~~~~~ia~iGEni~lrR~~~~ 138 (1289)
T 3avx_A 79 QTDFVAKDAGFQAFADKVLDAAVAGKIT-------------DVEVLKAQ-------FEEERVALVAKIGENINIRRVAAL 138 (1289)
T ss_dssp SCHHHHTSHHHHHHHHHHHHHHHTTTCC-------------CHHHHHHT-------TSTTTTTTTTTTCSCCEEEEEEEE
T ss_pred cccceeCCHHHHHHHHHHHHHHHhcCCC-------------CHHHHHHH-------HHHHHHHHHhhhccceEEeEEEEE
Confidence 9999999999999999999999988776 45566543 677788899999999999999999
Q ss_pred EeCCceeEEEeecCCCCCCCCCCCCccEEEEEEEeecCCCccccchHHHHHHHHHHHhhcCCcccCCCC-----------
Q psy17364 181 TVNEDHDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIGSEE----------- 249 (312)
Q Consensus 181 ~~geg~~~~~Y~H~~~~~~~~~~~~Gkig~lV~~~~~~~~~~~~~~~~~ak~iAmhi~a~~P~~l~~~~----------- 249 (312)
+ ++.+++|+|+ ||||+||.+++. .+++||+||||||||+|.||++++
T Consensus 139 ~---~~~v~~Y~Hg-----------~kigvlV~~~~~--------~~~~ak~iAMhIaA~~P~~l~~~~vp~~~ve~E~~ 196 (1289)
T 3avx_A 139 E---GDVLGSYQHG-----------ARIGVLVAAKGA--------DEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQ 196 (1289)
T ss_dssp E---CSEEEEEEET-----------TTEEEEEEEESC--------CHHHHHHHHHHHHHHCCSBSSTTTSCTTHHHHHHH
T ss_pred E---CCEEEEEecC-----------CeEEEEEEecCC--------cHHHHHHHHHHHHhcCCeecchhhCCHHHHHHHHH
Confidence 6 4689999994 599999999974 247999999999999999999886
Q ss_pred ---------CCCCCC-----------CcccccccccccccCCCCcHHHHHHHcCCceeeEEEEEecCccccccchHhHhh
Q psy17364 250 ---------DTPNED-----------PEEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEGCEESEETQTQAA 309 (312)
Q Consensus 250 ---------~kp~~~-----------~~~e~~Ll~Q~fi~d~~~tV~~~l~~~~~~v~~F~r~~vGe~ie~~~~~~~~~~ 309 (312)
|||+++ +++|+|||+|+|++|+++||+|+|++.+++|.+|+||++||++|+.++||++-.
T Consensus 197 i~~~~a~~~gKPe~i~eKiveGrl~Kf~~E~~Ll~Q~fv~d~~~TV~~llke~~a~V~~FvRfEVGEGIEK~e~dfAaEV 276 (1289)
T 3avx_A 197 VQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEHNAEVTGFIRFEVGEGIEKVETDFAAEV 276 (1289)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTBSTTSBCTTSTTSBHHHHHHTTTCEEEEEEEEETTTTCCCCCCCHHHHH
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhccCCceeecCccCHHHHHHhcCcEEEEeeeEeccccccccchhhhhhh
Confidence 788764 679999999999999999999999999999999999999999999999998543
No 3
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=100.00 E-value=2.2e-55 Score=386.27 Aligned_cols=157 Identities=30% Similarity=0.430 Sum_probs=150.7
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcHHHHHhhhhhccCCceEEEEe--CCcEEEEEEEec
Q psy17364 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQGLISIAV--EGKHATMVEFNC 100 (312)
Q Consensus 23 ~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~~~k~G~~~A~Kr~~R~t~eG~V~~~~--~~~~gvlvElnc 100 (312)
++++||+||++||+|||||||||+++|||+|+|++|||+ +|+++|.||++|.++||+|++++ +++.||||||||
T Consensus 3 ~a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~----kG~akAaKka~R~aaEGlV~~~i~~~~~~gvlvEvNc 78 (196)
T 1aip_C 3 QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRE----RGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNC 78 (196)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH----HHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEEC
T ss_pred hHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH----cCCchhhHhccccccCCeEEEEEecCCCEEEEEEEec
Confidence 578999999999999999999999999999999999999 59999999999999999999999 789999999999
Q ss_pred cchhhhhhhHHHHHHHHHHHHHHhcCCCCCCC---------------------------------CcchhhhhcCHHHHh
Q psy17364 101 ETDFVARNKQFQGMAELISLACLNYTKTQVQP---------------------------------QEPFAKVFLDTAQLQ 147 (312)
Q Consensus 101 ETDFVArne~F~~la~~ia~~i~a~~p~~~~~---------------------------------~g~i~k~~~~~~~l~ 147 (312)
||||||||+.|+.|+++|||||++++|.+++. +|+++||+.+.||++
T Consensus 79 ETDFVArn~~F~~lakdiAMhiAA~~P~~l~~~~vp~~~ve~E~~i~~~~~~~~gKPe~i~eKiveGrl~Kf~~e~~Ll~ 158 (196)
T 1aip_C 79 ETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLE 158 (196)
T ss_dssp SSHHHHTSHHHHHHHHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred CCccccCCHHHHHHHHHHHHHHHHhCCccCChhhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhHhhhhc
Confidence 99999999999999999999999999998754 579999999999999
Q ss_pred ccc-CCCCCCHHHHHHHHHHhhCCceEEEEEEEEEeC
Q psy17364 148 SLA-GPENKSLADHVAILISSVGENLVLRRAACVTVN 183 (312)
Q Consensus 148 q~~-~~~~~TV~d~i~~~i~~iGEnI~l~rf~~~~~g 183 (312)
|++ +|+++||++++++.++++||||+|+||.||++|
T Consensus 159 Q~fvkd~~~tV~~~l~~~~~~~G~~i~v~~F~R~~vG 195 (196)
T 1aip_C 159 QPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELG 195 (196)
T ss_dssp SBCTTCTTSBHHHHHHHHHHHHCSCCEEEEEEEEETT
T ss_pred CCccCCCCCCHHHHHHHHHHhcCCCcEEEEEEEEEeC
Confidence 997 689999999999999999999999999999986
No 4
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=99.95 E-value=3.5e-29 Score=211.98 Aligned_cols=107 Identities=25% Similarity=0.414 Sum_probs=99.2
Q ss_pred cCCceEEEEe--CCcEEEEEEEeccchhhhhhhHHHHHHHHHHHHHHhcCCCCCCC------------------------
Q psy17364 79 TSQGLISIAV--EGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQP------------------------ 132 (312)
Q Consensus 79 t~eG~V~~~~--~~~~gvlvElncETDFVArne~F~~la~~ia~~i~a~~p~~~~~------------------------ 132 (312)
|+||+|++|+ +++.||||||||||||||||+.|++|+++||||+++++|.+++.
T Consensus 1 a~EG~v~~yiH~~gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~p~~v~~e~vp~~~~e~E~~i~~~~~~~~gK 80 (145)
T 1tfe_A 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGK 80 (145)
T ss_dssp CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCcEEEEEEecCCCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcCCcccchhhCCHHHHHHHHHHHHHHHHhcCC
Confidence 5799999998 48999999999999999999999999999999999999998742
Q ss_pred ---------CcchhhhhcCHHHHhccc-CCCCCCHHHHHHHHHHhhCCceEEEEEEEEEeCCc
Q psy17364 133 ---------QEPFAKVFLDTAQLQSLA-GPENKSLADHVAILISSVGENLVLRRAACVTVNED 185 (312)
Q Consensus 133 ---------~g~i~k~~~~~~~l~q~~-~~~~~TV~d~i~~~i~~iGEnI~l~rf~~~~~geg 185 (312)
+|+++||+.+.|++.|++ +|+++||+|++++.++++||||+|+||.||++|+|
T Consensus 81 Pe~i~ekiv~Grl~Kf~~e~~Ll~Q~fv~d~~~tV~~~l~~~~~~iGeni~v~rf~r~~vGeg 143 (145)
T 1tfe_A 81 PQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGAM 143 (145)
T ss_dssp CHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC-
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccCCCccHHHHHHHHHHhhCCCeEEEEEEEEEeCCC
Confidence 589999999999999987 67889999999999999999999999999999986
No 5
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=99.90 E-value=1.4e-24 Score=183.75 Aligned_cols=105 Identities=28% Similarity=0.365 Sum_probs=86.4
Q ss_pred ceeEEEeecCCCCCCCCCCCCccEEEEEEEeecCCCc-cccchHHHHHHHHHHHhhcCCcccCCCC--------------
Q psy17364 185 DHDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGD-KQQNVQNVARQLCQHVIGMNPKSIGSEE-------------- 249 (312)
Q Consensus 185 g~~~~~Y~H~~~~~~~~~~~~Gkig~lV~~~~~~~~~-~~~~~~~~ak~iAmhi~a~~P~~l~~~~-------------- 249 (312)
.+.+++|+|++ |++|+||.+++.++-. ......+++++|||||+|++|.|++.++
T Consensus 3 EG~v~~yiH~~----------gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~p~~v~~e~vp~~~~e~E~~i~~ 72 (145)
T 1tfe_A 3 EGIIGHYIHHN----------QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYI 72 (145)
T ss_dssp EEEEEEEECTT----------SSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHH
T ss_pred CcEEEEEEecC----------CCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcCCcccchhhCCHHHHHHHHHHHH
Confidence 35799999986 8999999999863210 0111357999999999999999998663
Q ss_pred ------CCCCCC-----------CcccccccccccccCCCCcHHHHHHHc------CCceeeEEEEEecCccc
Q psy17364 250 ------DTPNED-----------PEEETIMYHQEFLLDPTQYVGEVIVAA------GIKPVEFLRFECGEGCE 299 (312)
Q Consensus 250 ------~kp~~~-----------~~~e~~Ll~Q~fi~d~~~tV~~~l~~~------~~~v~~F~r~~vGe~ie 299 (312)
|||+++ |++|+||++|+|++|+++||+|+|++. +++|.+|+||++||||.
T Consensus 73 ~~~~~~gKPe~i~ekiv~Grl~Kf~~e~~Ll~Q~fv~d~~~tV~~~l~~~~~~iGeni~v~rf~r~~vGegi~ 145 (145)
T 1tfe_A 73 QAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGAMMC 145 (145)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC---
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHhCccccCCCccHHHHHHHHHHhhCCCeEEEEEEEEEeCCCCC
Confidence 899863 689999999999999999999999986 89999999999999873
No 6
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=99.89 E-value=1.1e-23 Score=185.04 Aligned_cols=100 Identities=29% Similarity=0.398 Sum_probs=86.7
Q ss_pred eeEEEeecCCCCCCCCCCCCccEEEEEEEeecCCCc-cccchHHHHHHHHHHHhhcCCcccCCCC---------------
Q psy17364 186 HDVAGFTHPSPGLEHTGPILGKFGSLMVYQDLKTGD-KQQNVQNVARQLCQHVIGMNPKSIGSEE--------------- 249 (312)
Q Consensus 186 ~~~~~Y~H~~~~~~~~~~~~Gkig~lV~~~~~~~~~-~~~~~~~~ak~iAmhi~a~~P~~l~~~~--------------- 249 (312)
+.++.|+|.. |++|+||.++++++-. .......|+++|||||||++|.||++++
T Consensus 58 GlV~~~i~~~----------~~~gvlvEvNcETDFVArn~~F~~lakdiAMhiAA~~P~~l~~~~vp~~~ve~E~~i~~~ 127 (196)
T 1aip_C 58 GIIGHYIHHN----------QRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQ 127 (196)
T ss_dssp CEEEEEECTT----------SSEEEEEEEECSSHHHHTSHHHHHHHHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEEecC----------CCEEEEEEEecCCccccCCHHHHHHHHHHHHHHHHhCCccCChhhCCHHHHHHHHHHHHH
Confidence 4799999976 8999999999975421 1112457899999999999999999875
Q ss_pred -----CCCCCC-----------CcccccccccccccCCCCcHHHHHHHc------CCceeeEEEEEec
Q psy17364 250 -----DTPNED-----------PEEETIMYHQEFLLDPTQYVGEVIVAA------GIKPVEFLRFECG 295 (312)
Q Consensus 250 -----~kp~~~-----------~~~e~~Ll~Q~fi~d~~~tV~~~l~~~------~~~v~~F~r~~vG 295 (312)
|||+++ |++|+|||+|+|++|+++||+|+|++. +++|.+|+||++|
T Consensus 128 ~~~~~gKPe~i~eKiveGrl~Kf~~e~~Ll~Q~fvkd~~~tV~~~l~~~~~~~G~~i~v~~F~R~~vG 195 (196)
T 1aip_C 128 AALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELG 195 (196)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHHHHHHHBTTTSBCTTCTTSBHHHHHHHHHHHHCSCCEEEEEEEEETT
T ss_pred HHHHcCCcHHHHHHHHHHHHHHHHhHhhhhcCCccCCCCCCHHHHHHHHHHhcCCCcEEEEEEEEEeC
Confidence 888764 689999999999999999999999987 8999999999999
No 7
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=99.80 E-value=2.9e-20 Score=135.32 Aligned_cols=59 Identities=46% Similarity=0.660 Sum_probs=51.3
Q ss_pred cccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHhhcHHHHHhhhhhccCCc
Q psy17364 20 LTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGRKTSQG 82 (312)
Q Consensus 20 ~~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~~~k~G~~~A~Kr~~R~t~eG 82 (312)
+.+++++||+||++||+||||||+||+++|||+++|++|||++ |.+.+.+++.|.++.|
T Consensus 6 ~~it~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~k----g~~~a~kKA~k~~~~~ 64 (64)
T 2cp9_A 6 SGSSKELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKE----AQKEGWSKAASGPSSG 64 (64)
T ss_dssp SCCCCHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHH----HHHHCCSSSCCCCCCC
T ss_pred ccCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHH----hHHHHHHHHhccCCCC
Confidence 5689999999999999999999999999999999999999996 6666666666666544
No 8
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=99.58 E-value=1.7e-15 Score=141.32 Aligned_cols=121 Identities=12% Similarity=0.008 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHHhhcHHHHHhhhhhccC--CceEEEEeC-------------CcEEEEEEEeccchhhhhhhHHHHHHH
Q psy17364 52 LGKAEKWLQEQAKELGWAKASKLAGRKTS--QGLISIAVE-------------GKHATMVEFNCETDFVARNKQFQGMAE 116 (312)
Q Consensus 52 ~ekA~e~Lr~~~~k~G~~~A~Kr~~R~t~--eG~V~~~~~-------------~~~gvlvElncETDFVArne~F~~la~ 116 (312)
++.++. +.+++.|+++..+|+.+... +|.|++|++ |++|+||+++|+.+ ++.+..+++
T Consensus 140 v~d~i~---~~ia~iGEni~lrR~~~~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~----~~~l~~~ak 212 (291)
T 1xb2_B 140 LKDQLA---LAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSEL----KANLADLGR 212 (291)
T ss_dssp HHHHHH---HHHHHHCSCEEEEEEEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSC----GGGCHHHHH
T ss_pred HHHHHH---HHHHHhhhhHHHHHHHHhcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCc----cchHHHHHH
Confidence 555544 44556999999999988765 489998875 78999999999643 123457999
Q ss_pred HHHHHHHhcCCCCCCCCcchhhhhcCHHHHhccc-CCCCCCHHHHHHHHHHhhCCceEEEEEEEEEeCCc
Q psy17364 117 LISLACLNYTKTQVQPQEPFAKVFLDTAQLQSLA-GPENKSLADHVAILISSVGENLVLRRAACVTVNED 185 (312)
Q Consensus 117 ~ia~~i~a~~p~~~~~~g~i~k~~~~~~~l~q~~-~~~~~TV~d~i~~~i~~iGEnI~l~rf~~~~~geg 185 (312)
+|||||++++|.++++..--..|+.+.|||+|+| +|+++||++++++ .+|+|++|.||++|+|
T Consensus 213 ~iAmHIaA~~P~~l~~~~v~~gf~~E~~Ll~Q~fv~D~~~tV~~~l~~------~~i~V~~F~RfevGEg 276 (291)
T 1xb2_B 213 RLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYVQP------HGVSVVDFVRFECGEG 276 (291)
T ss_dssp HHHHHHHHHCCSBCCCTTSCCCGGGCCBGGGSBCTTCTTSBHHHHHGG------GTCEEEEEEEEETTCC
T ss_pred HHHHHHHhcCCcccCHHHhhccchhheeeccCcccCCCCcCHHHHHHh------CCCEEEEEEEEEecCc
Confidence 9999999999999876422234788999999998 6899999998887 4899999999999986
No 9
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.32 E-value=4.7e-13 Score=144.03 Aligned_cols=112 Identities=10% Similarity=0.053 Sum_probs=97.4
Q ss_pred HHHHHHHhhcHHHHHhhhhhccCCceEEEEeCC-cEEEEEEEeccchhhhhhhHHHHHHHHHHHHHHhcCCCCCCC----
Q psy17364 58 WLQEQAKELGWAKASKLAGRKTSQGLISIAVEG-KHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQP---- 132 (312)
Q Consensus 58 ~Lr~~~~k~G~~~A~Kr~~R~t~eG~V~~~~~~-~~gvlvElncETDFVArne~F~~la~~ia~~i~a~~p~~~~~---- 132 (312)
.+.+.+++.|+++..+|+.+... |.|++|+++ ++||||++.+. | + +++++|||||++++|.+++.
T Consensus 118 ~~~~~ia~iGEni~lrR~~~~~~-~~v~~Y~Hg~kigvlV~~~~~-~-----~---~~ak~iAMhIaA~~P~~l~~~~vp 187 (1289)
T 3avx_A 118 ERVALVAKIGENINIRRVAALEG-DVLGSYQHGARIGVLVAAKGA-D-----E---ELVKHIAMHVAASKPEFIKPEDVS 187 (1289)
T ss_dssp TTTTTTTTTCSCCEEEEEEEEEC-SEEEEEEETTTEEEEEEEESC-C-----H---HHHHHHHHHHHHHCCSBSSTTTSC
T ss_pred HHHHHHhhhccceEEeEEEEEEC-CEEEEEecCCeEEEEEEecCC-c-----H---HHHHHHHHHHHhcCCeecchhhCC
Confidence 45566778999999999998875 899999987 99999999873 2 1 58999999999999998754
Q ss_pred -----------------------------CcchhhhhcCHHHHhccc-CCCCCCHHHHHHHHHHhhCCceEEEEEEEEEe
Q psy17364 133 -----------------------------QEPFAKVFLDTAQLQSLA-GPENKSLADHVAILISSVGENLVLRRAACVTV 182 (312)
Q Consensus 133 -----------------------------~g~i~k~~~~~~~l~q~~-~~~~~TV~d~i~~~i~~iGEnI~l~rf~~~~~ 182 (312)
+|+++||+.++|+++|++ +|+++||++++++. ++++++|.||++
T Consensus 188 ~~~ve~E~~i~~~~a~~~gKPe~i~eKiveGrl~Kf~~E~~Ll~Q~fv~d~~~TV~~llke~------~a~V~~FvRfEV 261 (1289)
T 3avx_A 188 AEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEV 261 (1289)
T ss_dssp TTHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTBSTTSBCTTSTTSBHHHHHHTT------TCEEEEEEEEET
T ss_pred HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhccCCceeecCccCHHHHHHhc------CcEEEEeeeEec
Confidence 689999999999999997 78999999987763 799999999999
Q ss_pred CCc
Q psy17364 183 NED 185 (312)
Q Consensus 183 geg 185 (312)
|+|
T Consensus 262 GEG 264 (1289)
T 3avx_A 262 GEG 264 (1289)
T ss_dssp TTT
T ss_pred ccc
Confidence 975
No 10
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=97.52 E-value=0.00011 Score=58.08 Aligned_cols=37 Identities=27% Similarity=0.259 Sum_probs=35.9
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 25 SLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 25 ~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
+.|++|.++||.+--+|++||.++|||++.|++.|.+
T Consensus 41 ekVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lle 77 (104)
T 1wj7_A 41 EKVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLE 77 (104)
T ss_dssp HHHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 5899999999999999999999999999999999997
No 11
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=97.51 E-value=0.00015 Score=46.94 Aligned_cols=35 Identities=29% Similarity=0.408 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWL 59 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~L 59 (312)
.+.|++|.+. |.+--.|++||..++||++.|++||
T Consensus 5 ~~~i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 5 NSKIAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5689999998 9999999999999999999999998
No 12
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=97.24 E-value=0.00032 Score=46.45 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 23 ~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
+.+.|++|.++ |.+--.|++||..++||++.|++||-.
T Consensus 4 ~e~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 4 KSLAVEELSGM-GFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHHHHHTT-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 45778999885 899999999999999999999999974
No 13
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.08 E-value=0.00087 Score=48.13 Aligned_cols=41 Identities=20% Similarity=0.341 Sum_probs=37.9
Q ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
.++.+.|++|-++ |.+--.|++||..++||++.|++||-..
T Consensus 7 ~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 7 GPPEDCVTTIVSM-GFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp CCCHHHHHHHHHH-TCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4788999999996 9999999999999999999999999874
No 14
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.93 E-value=0.0022 Score=44.72 Aligned_cols=39 Identities=23% Similarity=0.199 Sum_probs=31.9
Q ss_pred cCHHHHHHHHHHhCCCH-HHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSF-TNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~-~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
-..+.|.+||++ |..= ..+.+||..++||++.|++||..
T Consensus 8 ~~~~~l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~ 47 (54)
T 2dah_A 8 HFQVQLEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQ 47 (54)
T ss_dssp SSHHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 346788999988 5422 34799999999999999999986
No 15
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=96.88 E-value=0.0013 Score=45.56 Aligned_cols=37 Identities=22% Similarity=0.208 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGY-SFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 24 ~~lik~LR~~Tga-~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
.+.|.+|+++ |. .-..|.+||..++||++.|++||-.
T Consensus 12 ~~~l~~L~~M-GF~~~~~~~~AL~~t~gnve~Ave~L~~ 49 (53)
T 2knz_A 12 QQQLEQLNSM-GFINREANLQALIATGGDINAAIERLLG 49 (53)
T ss_dssp HHHHHHHHTT-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3457888876 55 7789999999999999999999985
No 16
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=96.84 E-value=0.0017 Score=44.80 Aligned_cols=39 Identities=21% Similarity=0.168 Sum_probs=33.7
Q ss_pred ccCHHHHHHHHHHhCC-CHHHHHHHHHHhcCCHHHHHHHHH
Q psy17364 21 TTNKSLLGKLRKKTGY-SFTNCKKALDLNEQDLGKAEKWLQ 60 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga-~~~dCKkAL~e~~gD~ekA~e~Lr 60 (312)
....+.|.+|+++ |. .-..|.+||..++||++.|++||-
T Consensus 10 ~~~~~~l~~L~~M-GF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 10 VRFQQQLEQLSAM-GFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp TTTHHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred hHHHHHHHHHHHc-CCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3456789999987 66 778999999999999999999995
No 17
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.78 E-value=0.0023 Score=45.98 Aligned_cols=41 Identities=22% Similarity=0.246 Sum_probs=36.7
Q ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
.++.+.|++|-++ |.+--.|++||..++||++.|++||...
T Consensus 7 ~~~~~~I~~L~~M-GF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 7 GVDEKALKHITEM-GFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp SSCHHHHHHHHTT-TCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 3678899999874 8999999999999999999999999873
No 18
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=96.70 E-value=0.002 Score=50.77 Aligned_cols=39 Identities=23% Similarity=0.207 Sum_probs=37.1
Q ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHH
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWL 59 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~L 59 (312)
.++.+.|..++++||++-.+.++||.++|||+-.|+-+|
T Consensus 63 ~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 63 EIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp CCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 588999999999999999999999999999999999876
No 19
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.67 E-value=0.0016 Score=46.88 Aligned_cols=42 Identities=29% Similarity=0.422 Sum_probs=37.6
Q ss_pred cccCHHHHHHHHHHhCCCHHHHHHHHHHh-cCCHHHHHHHHHHH
Q psy17364 20 LTTNKSLLGKLRKKTGYSFTNCKKALDLN-EQDLGKAEKWLQEQ 62 (312)
Q Consensus 20 ~~~~~~lik~LR~~Tga~~~dCKkAL~e~-~gD~ekA~e~Lr~~ 62 (312)
..++.+.|.+|-++ |.+--.|++||..+ +||++.|++||-..
T Consensus 6 ~~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 6 SGAELTALESLIEM-GFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp CCCCCCHHHHHHTT-TCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc-CCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 45778899999985 99999999999999 79999999999873
No 20
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.67 E-value=0.0043 Score=46.05 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=32.2
Q ss_pred CHHHHHHHHHHhCC-CHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTGY-SFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 23 ~~~lik~LR~~Tga-~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
-.+.|.+|+++ |. .-..+.+||..++||++.|++||..
T Consensus 29 ye~qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 29 YQQELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp SHHHHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 35689999987 54 4577899999999999999999984
No 21
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=96.65 E-value=0.0032 Score=42.38 Aligned_cols=36 Identities=22% Similarity=0.236 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHhcCCHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGY-SFTNCKKALDLNEQDLGKAEKWLQ 60 (312)
Q Consensus 24 ~~lik~LR~~Tga-~~~dCKkAL~e~~gD~ekA~e~Lr 60 (312)
.+.|.+|+++ |. .-..+.+||..++||++.|++||-
T Consensus 8 ~~~i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 8 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4678888877 43 345689999999999999999996
No 22
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.56 E-value=0.0045 Score=45.04 Aligned_cols=38 Identities=16% Similarity=0.033 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
.+.|.+||++=-.--..|.+||.+++||++.|++||..
T Consensus 20 ~~ql~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~ 57 (67)
T 2dna_A 20 SKEMECLQAMGFVNYNANLQALIATDGDTNAAIYKLKS 57 (67)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 44788888764455667899999999999999999986
No 23
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.51 E-value=0.0045 Score=45.87 Aligned_cols=41 Identities=20% Similarity=0.444 Sum_probs=37.5
Q ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHhcC-CHHHHHHHHHHH
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQ-DLGKAEKWLQEQ 62 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~g-D~ekA~e~Lr~~ 62 (312)
.++.+.|.+|-++ |.+--.|++||..++| |++.|++||-..
T Consensus 7 ~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~~ve~A~ewL~~~ 48 (74)
T 2dag_A 7 GLDESVIIQLVEM-GFPMDACRKAVYYTGNSGAEAAMNWVMSH 48 (74)
T ss_dssp SSCHHHHHHHHHH-SCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 4788999999995 9999999999999996 899999999974
No 24
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=96.49 E-value=0.0047 Score=43.66 Aligned_cols=37 Identities=22% Similarity=0.238 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGY-SFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 24 ~~lik~LR~~Tga-~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
.+.|.+|+++ |. .-..+.+||..++||++.|++||..
T Consensus 18 ~~qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 18 EHQLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 5578999987 54 3567899999999999999999975
No 25
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.43 E-value=0.0033 Score=42.85 Aligned_cols=38 Identities=18% Similarity=0.270 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 23 ~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..+.|++|-+. |.+--.|++||..++||++.|++||-.
T Consensus 8 ~~~~i~~L~~M-GF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 8 YETMLTEIMSM-GYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHHHHHHHT-TCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred CHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 45678888776 899999999999999999999999975
No 26
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.38 E-value=0.0062 Score=46.16 Aligned_cols=40 Identities=30% Similarity=0.519 Sum_probs=37.2
Q ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
.++.+.|.+|-++ |.+--.|++||..++||++.|++||-.
T Consensus 27 ~~~e~~i~~L~~M-GF~~~~a~~AL~~t~~nve~A~ewL~~ 66 (83)
T 2dai_A 27 RVDEAALRQLTEM-GFPENRATKALQLNHMSVPQAMEWLIE 66 (83)
T ss_dssp SCCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3688999999985 999999999999999999999999987
No 27
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=96.38 E-value=0.0046 Score=44.51 Aligned_cols=39 Identities=26% Similarity=0.334 Sum_probs=35.4
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcC-CHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQ-DLGKAEKWLQE 61 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~g-D~ekA~e~Lr~ 61 (312)
++.+.|.+|-++ |.+--.|++||..++| |++.|++||-.
T Consensus 18 ~~e~~i~~L~~M-GF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 18 KHGSALDVLLSM-GFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp SCCCHHHHHHHH-TCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred CCHHHHHHHHHc-CCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 566789999885 9999999999999998 99999999975
No 28
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.26 E-value=0.0081 Score=44.37 Aligned_cols=40 Identities=25% Similarity=0.407 Sum_probs=36.8
Q ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
.++.+.|.+|-+. |.+--.|++||..++||++.|++||-.
T Consensus 27 ~~~~~~v~~L~~M-GF~~~~a~~AL~~t~~nve~Ave~L~~ 66 (73)
T 1wiv_A 27 DIDQSSVDTLLSF-GFAEDVARKALKASGGDIEKATDWVFN 66 (73)
T ss_dssp SSCHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 4788999999876 899999999999999999999999986
No 29
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=96.08 E-value=0.0092 Score=44.13 Aligned_cols=40 Identities=25% Similarity=0.302 Sum_probs=36.0
Q ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
....+.|++|-++ |.+--.+.+||..++||++.|++||..
T Consensus 27 ~~~ee~I~~L~eM-GF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 27 AASEEQIQKLVAM-GFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp CCCHHHHHHHHTT-TCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cccHHHHHHHHHc-CCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 3567899999875 899999999999999999999999985
No 30
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=96.03 E-value=0.014 Score=44.16 Aligned_cols=42 Identities=14% Similarity=0.184 Sum_probs=38.2
Q ss_pred cccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 20 LTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 20 ~~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
+.++.+.|.+|-++ |..--.|++||..++||++.|++||-..
T Consensus 26 ~~~~ee~I~~Lv~M-GF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 26 ASPSQESINQLVYM-GFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp CCCCHHHHHHHHHH-SCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45678999999987 9999999999999999999999999974
No 31
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.94 E-value=0.0068 Score=43.64 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=36.6
Q ss_pred cccCHHHHHHHHHHhCCCHHHHHHHHHHhcC-CHHHHHHHHHHH
Q psy17364 20 LTTNKSLLGKLRKKTGYSFTNCKKALDLNEQ-DLGKAEKWLQEQ 62 (312)
Q Consensus 20 ~~~~~~lik~LR~~Tga~~~dCKkAL~e~~g-D~ekA~e~Lr~~ 62 (312)
..++.+.|.+|-+ -|.+--.|++||..++| |++.|++||-+.
T Consensus 6 ~~~~e~~v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 6 SGSSPSLLEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp CCCSCSSHHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 3456678899998 59999999999999987 999999999873
No 32
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.87 E-value=0.013 Score=39.27 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=35.3
Q ss_pred cccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 20 LTTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 20 ~~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..++.+.|.+|-+. |.+--.|++||..++ |++.|++||-.
T Consensus 6 ~~~~~~~v~~L~~M-GF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 6 SGVNQQQLQQLMDM-GFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp CSSCHHHHHHHHHH-HCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHc-CCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 35788999999885 899999999999995 99999999963
No 33
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=95.85 E-value=0.019 Score=43.52 Aligned_cols=42 Identities=24% Similarity=0.434 Sum_probs=37.7
Q ss_pred cccCHHHHHHHHHHhCCCHHHHHHHHHHhc-CCHHHHHHHHHHH
Q psy17364 20 LTTNKSLLGKLRKKTGYSFTNCKKALDLNE-QDLGKAEKWLQEQ 62 (312)
Q Consensus 20 ~~~~~~lik~LR~~Tga~~~dCKkAL~e~~-gD~ekA~e~Lr~~ 62 (312)
..++.+.|.+|-++ |.+--.|++||..++ ||++.|++||-..
T Consensus 26 ~~~~e~~v~~L~~M-GF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 26 PVANEEIVAQLVSM-GFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp CCCCHHHHHHHHHH-TCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHc-CCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 45789999999985 999999999999995 7999999999874
No 34
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=95.41 E-value=0.024 Score=45.91 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=36.3
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
++.+.|++|-+. |.+--.|++||..++||++.|.+||-.
T Consensus 77 ~~e~~v~~L~~M-GF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 77 PPEEIVAIITSM-GFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp CCHHHHHHHHHH-TSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 678899999885 999999999999999999999999985
No 35
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.39 E-value=0.019 Score=43.60 Aligned_cols=39 Identities=26% Similarity=0.319 Sum_probs=35.3
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
++.+.|++|-+. |.+--.|++||..++||++.|++||-.
T Consensus 20 ~n~~~I~qL~~M-GF~~~~a~~AL~~~n~n~e~A~ewL~~ 58 (85)
T 2dkl_A 20 IMSRLIKQLTDM-GFPREPAEEALKSNNMNLDQAMSALLE 58 (85)
T ss_dssp HHHHHHHHHHHH-TCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 457789999885 999999999999999999999999986
No 36
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=95.23 E-value=0.013 Score=41.65 Aligned_cols=37 Identities=14% Similarity=0.328 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
.+.|..|= .-|.+--..++||.+++||+|.|.+||-.
T Consensus 20 ~e~V~~Lv-sMGFs~~qA~kALKat~~NvErAaDWLFS 56 (63)
T 1wgn_A 20 RQCVETVV-NMGYSYECVLRAMKKKGENIEQILDYLFA 56 (63)
T ss_dssp HHHHHHHH-HHHCCHHHHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 34455554 34677789999999999999999999975
No 37
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=95.20 E-value=0.042 Score=38.83 Aligned_cols=41 Identities=15% Similarity=0.266 Sum_probs=37.3
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
.-.++|.++...||.-.-=|.+.|++++||++.|+....+.
T Consensus 6 ~q~~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~l 46 (59)
T 1oai_A 6 EQQEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTHL 46 (59)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34579999999999999999999999999999999998763
No 38
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=95.14 E-value=0.025 Score=44.91 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
.+.|.+||++=-.---.|.+||..++||++.|++||..
T Consensus 67 ~~qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~ 104 (108)
T 2cwb_A 67 QPQLQQLRDMGIQDDELSLRALQATGGDIQAALELIFA 104 (108)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 56677777653223357999999999999999999985
No 39
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=95.07 E-value=0.038 Score=36.95 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHhcCCHHHHHH
Q psy17364 24 KSLLGKLRKKTGYS-FTNCKKALDLNEQDLGKAEK 57 (312)
Q Consensus 24 ~~lik~LR~~Tga~-~~dCKkAL~e~~gD~ekA~e 57 (312)
-++|.+....||+. +..|+.=|+.+|||++.|+.
T Consensus 6 de~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 6 EMILADFQACTGIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 47899999999977 79999999999999999974
No 40
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=94.93 E-value=0.02 Score=46.17 Aligned_cols=39 Identities=23% Similarity=0.354 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 23 ~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
....|.+|.+ -|.+--.+|+||..++||+++|++||-..
T Consensus 76 ~~~~v~~L~e-MGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 76 FLQLMSKFKE-MGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp HHHHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 3455777765 47888999999999999999999999874
No 41
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=94.83 E-value=0.045 Score=38.42 Aligned_cols=39 Identities=21% Similarity=0.077 Sum_probs=36.6
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 23 ~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
-.++|.+|..+||.-+-=|.+.|++++||++.|+....+
T Consensus 6 q~~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~ 44 (57)
T 2jp7_A 6 QLELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQS 44 (57)
T ss_dssp HHHHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 357999999999999999999999999999999999886
No 42
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=94.54 E-value=0.038 Score=44.69 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=35.1
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcC-CHHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQ-DLGKAEKWLQEQ 62 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~g-D~ekA~e~Lr~~ 62 (312)
++...|.+|-+ -|.+-..|++||..++| |++.|++||-..
T Consensus 2 ~d~~~l~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~ 42 (126)
T 2lbc_A 2 IDESSVMQLAE-MGFPLEACRKAVYFTGNMGAEVAFNWIIVH 42 (126)
T ss_dssp CCTHHHHHHHT-TSSCCHHHHHHHHHHTSCCHHHHHHHHHHG
T ss_pred CCHHHHHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHHh
Confidence 45677888887 89999999999999965 999999999974
No 43
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=93.53 E-value=0.0065 Score=49.01 Aligned_cols=39 Identities=28% Similarity=0.377 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhCCC-HHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGYS-FTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 24 ~~lik~LR~~Tga~-~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
--++.+||+-||.. ..--.+||..+|||+.+|+.+|.++
T Consensus 19 Q~lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~ 58 (129)
T 2lva_A 19 QMLLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDE 58 (129)
Confidence 34899999999987 7778999999999999999999985
No 44
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=94.28 E-value=0.069 Score=39.31 Aligned_cols=40 Identities=25% Similarity=0.342 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHhCC-CHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTGY-SFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 23 ~~~lik~LR~~Tga-~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
.--++.+||+-||. -..--.+||..++||+..|+-+|.++
T Consensus 24 ~q~lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 24 QQTFLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 34489999999995 35567899999999999999999973
No 45
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=93.66 E-value=0.027 Score=37.94 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 23 ~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..+.|.+|-.. |.+-..|.+||..+++|.+.|.+||-.
T Consensus 4 e~eaI~rL~~m-GF~~~~a~~Al~a~~~n~e~A~~~Lf~ 41 (47)
T 1dv0_A 4 EKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLS 41 (47)
T ss_dssp CHHHHTTTTTT-TCCHHHHHHHHTTTTSCHHHHHHHTTS
T ss_pred hHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 45567777544 888899999999999999999999963
No 46
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=93.32 E-value=0.076 Score=42.70 Aligned_cols=40 Identities=13% Similarity=0.316 Sum_probs=34.4
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
...++|.+|-. -|.|...|+|||..+++|.++|++||...
T Consensus 7 ~e~~~v~~l~~-MGFp~~~~~kAl~~~g~~~e~amewL~~h 46 (118)
T 4ae4_A 7 SERQCVETVVN-MGYSYECVLRAMKAAGANIEQILDYLFAH 46 (118)
T ss_dssp HHHHHHHHHHH-TTCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-cCCCHHHHHHHHHHHCcCHHHHHHHHHHh
Confidence 45567777754 59999999999999999999999999985
No 47
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=92.98 E-value=0.11 Score=34.16 Aligned_cols=39 Identities=21% Similarity=0.092 Sum_probs=34.8
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 23 ~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..++|.+...-||++--.|+.-|+.++||++.|+...-+
T Consensus 5 ~~~~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 5 RQDALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 457899999999999999999999999999999976543
No 48
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.26 E-value=0.22 Score=35.92 Aligned_cols=39 Identities=18% Similarity=0.262 Sum_probs=35.0
Q ss_pred CHHHHHHHHHHhC-CCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTG-YSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 23 ~~~lik~LR~~Tg-a~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..++|.+....|| ...-.|+.-|+.++||++.|+...-+
T Consensus 18 ~~e~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 18 QTEKLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3568999999999 99999999999999999999987654
No 49
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.55 E-value=0.3 Score=33.83 Aligned_cols=40 Identities=10% Similarity=-0.016 Sum_probs=33.8
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..+..+.+|+++-=.--...++||..++||+++|++.|-.
T Consensus 8 ~~a~~L~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~ 47 (54)
T 2cp8_A 8 QTAALMAHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQ 47 (54)
T ss_dssp THHHHHHHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4566888999875456688999999999999999999886
No 50
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=90.96 E-value=0.62 Score=31.90 Aligned_cols=39 Identities=28% Similarity=0.516 Sum_probs=33.7
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
...+-|++|=. -|.+-.+..+||..++||++-|-.+|++
T Consensus 10 ~~~~~Ia~Lm~-mGFsr~~ai~AL~~a~nnve~AaniLle 48 (52)
T 2ooa_A 10 NVDAKIAKLMG-EGYAFEEVKRALEIAQNNVEVARSILRE 48 (52)
T ss_dssp -CHHHHHHHHH-TTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred ChHHHHHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 34478888865 5899999999999999999999999997
No 51
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.63 E-value=0.41 Score=33.83 Aligned_cols=39 Identities=23% Similarity=0.218 Sum_probs=35.5
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 23 ~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..++|.+....||+.--.|+.-|+.++||++.|+...-+
T Consensus 15 ~~e~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~ 53 (62)
T 2dal_A 15 LKGLIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLD 53 (62)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 457899999999999999999999999999999987654
No 52
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=90.22 E-value=0.38 Score=33.12 Aligned_cols=40 Identities=28% Similarity=0.419 Sum_probs=33.8
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
..-+-|++|=. -|++-.+..+||..++||+|-|-.+||+-
T Consensus 8 ~~e~~I~~L~~-lGF~r~~ai~AL~~a~nnve~Aa~iL~ef 47 (53)
T 2d9s_A 8 QLSSEIERLMS-QGYSYQDIQKALVIAHNNIEMAKNILREF 47 (53)
T ss_dssp CSHHHHHHHHH-HTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHH-cCCCHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 34455777754 48999999999999999999999999985
No 53
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=90.00 E-value=0.38 Score=32.02 Aligned_cols=29 Identities=31% Similarity=0.550 Sum_probs=26.8
Q ss_pred hCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 34 TGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 34 Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
-|+.-.+..+||.-+++|++.|-++||+-
T Consensus 14 ~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef 42 (46)
T 2oo9_A 14 QGYSYQDIQKALVIAQNNIEMAKNILREF 42 (46)
T ss_dssp TTBCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhhccHHHHHHHHHHh
Confidence 47888899999999999999999999984
No 54
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=88.40 E-value=1 Score=31.61 Aligned_cols=42 Identities=10% Similarity=0.041 Sum_probs=36.9
Q ss_pred cccCHHHHHHHHHH-hCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 20 LTTNKSLLGKLRKK-TGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 20 ~~~~~~lik~LR~~-Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..++.+.|+.|++. -+..--.-+++|.+++||+|.|++.|-+
T Consensus 6 ~~~~ee~l~~L~emFP~ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 6 SGCSEEDLKAIQDMFPNMDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SSSCHHHHHHHHHHCSSSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45788999999998 4567778999999999999999999986
No 55
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=87.46 E-value=0.55 Score=32.45 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=33.1
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
++-+-|..|=. -|+.-.+..+||.-++||++-|-.+|++-
T Consensus 6 p~e~~Ia~L~s-mGfsr~da~~AL~ia~Ndv~~AtNiLlEf 45 (56)
T 2juj_A 6 QLSSEIENLMS-QGYSYQDIQKALVIAQNNIEMAKNILREF 45 (56)
T ss_dssp HHHHHHHHHHT-TTCCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred CChHHHHHHHH-cCCCHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 34455666654 48899999999999999999999999983
No 56
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=87.39 E-value=0.9 Score=30.73 Aligned_cols=37 Identities=24% Similarity=0.105 Sum_probs=32.9
Q ss_pred HHHHHHHHH-hCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 25 SLLGKLRKK-TGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 25 ~lik~LR~~-Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
+-++.|-++ .......-|-+|..++||++.|+..|-.
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~~~Gd~d~Ai~~LL~ 43 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLENNNDLDLTIGLLLK 43 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHHTTTCSHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 457778887 6788999999999999999999999986
No 57
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.85 E-value=0.96 Score=32.41 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 25 SLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 25 ~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
++|.+.-..||++--.++.-|+.++||++.|+...-+
T Consensus 19 ~~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 19 VMINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 6899999999999999999999999999999987653
No 58
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=80.04 E-value=1.6 Score=32.12 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=28.9
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHh------cCCHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLN------EQDLGKAEKW 58 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~------~gD~ekA~e~ 58 (312)
--...||.+|+.||.|+.+.|+..+.+ +-.=++|.++
T Consensus 18 ~Ki~vIK~VR~itgLgLkEAK~lVe~~P~~iKe~vsKeeAe~i 60 (74)
T 1ctf_A 18 NKVAVIKAVRGATGLGLKEAKDLVESAPAALKEGVSKDDAEAL 60 (74)
T ss_dssp GHHHHHHHHHHHHCCCHHHHHHHHHTCSEEEEEEECHHHHHHH
T ss_pred chhHHHHHHHHHcCCCHHHHHHHHHhCcHHHHcCCCHHHHHHH
Confidence 346899999999999999999998866 3345555544
No 59
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=78.90 E-value=0.86 Score=43.42 Aligned_cols=38 Identities=18% Similarity=0.277 Sum_probs=33.2
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 23 ~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..+.|.+|-+ -|.+=-.|++||..++||.+.|++||-.
T Consensus 168 ~~~~i~~l~~-MGf~~~~~~~AL~a~~nn~~~A~e~L~~ 205 (368)
T 1oqy_A 168 YETMLTEIMS-MGYERERVVAALRASYNNPHRAVEYLLT 205 (368)
T ss_dssp HHHHHHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTTTT
T ss_pred hHHHHHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4567888865 4899999999999999999999999974
No 60
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=78.87 E-value=2.2 Score=36.93 Aligned_cols=36 Identities=19% Similarity=0.191 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQ 60 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr 60 (312)
-+.|++|.++ |..=-.+.+||..++||++.|.++|-
T Consensus 164 eekV~~l~~M-Gf~~~~a~~AL~~~~wd~~~A~e~L~ 199 (201)
T 3k9o_A 164 TKKIENLCAM-GFDRNAVIVALSSKSWDVETATELLL 199 (201)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 4567777655 77788999999999999999999986
No 61
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=75.89 E-value=6.6 Score=28.14 Aligned_cols=41 Identities=7% Similarity=0.060 Sum_probs=35.4
Q ss_pred cCHHHHHHHHHHh-CCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKT-GYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 22 ~~~~lik~LR~~T-ga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
...+.++.|+++- ...--.-+..|++++||++.|++-|-..
T Consensus 17 ~~~~~v~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~m 58 (67)
T 2dhy_A 17 EFNQAMDDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQM 58 (67)
T ss_dssp CSHHHHHHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 5678899999983 4667789999999999999999999874
No 62
>1jkg_B TAP; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_B 1go5_A
Probab=74.63 E-value=0.62 Score=41.91 Aligned_cols=38 Identities=16% Similarity=0.295 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
.++|.++..+||.-+-=|.+.|++++||++.|+....+
T Consensus 199 ~~~v~~~~~~T~mn~~~s~~cL~~~~Wd~~~A~~~F~~ 236 (250)
T 1jkg_B 199 QEMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 236 (250)
T ss_dssp --------------------------------------
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 36899999999999999999999999999999998776
No 63
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=74.28 E-value=7.3 Score=30.30 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=36.6
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..++.|+.|=++|..-+...=|||-++.||++.|..+|..
T Consensus 12 ~~~~~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~ 51 (111)
T 3k6g_A 12 AAIKIIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLAS 51 (111)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhC
Confidence 3477888888999999999999999999999999999985
No 64
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=70.27 E-value=3.5 Score=28.35 Aligned_cols=40 Identities=18% Similarity=0.303 Sum_probs=32.6
Q ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHhcC-CHHHHHHHHHH
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQ-DLGKAEKWLQE 61 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~g-D~ekA~e~Lr~ 61 (312)
.++.+++..|=+ -|.+---.-+||..+++ .++.|++||.+
T Consensus 7 ~vn~qmlq~L~e-MGFd~erae~Alk~Tg~~Gle~AmewL~k 47 (54)
T 2cos_A 7 GVNRQMLQELVN-AGCDQEMAGRALKQTGSRSIEAALEYISK 47 (54)
T ss_dssp SCCHHHHHHHHH-HHCCHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred hhHHHHHHHHHH-cCCCHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 578888777754 46666677899999986 89999999997
No 65
>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*
Probab=61.42 E-value=10 Score=34.07 Aligned_cols=36 Identities=19% Similarity=0.200 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQ 60 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr 60 (312)
.+.|++|.+. |..=-.+..||..+|||++.|.+.|-
T Consensus 216 ~~~v~~l~~m-gf~~~~~~~al~~~nWd~~~A~e~L~ 251 (253)
T 3e46_A 216 TKKIENLCAA-GFDRNAVIVALSSKSWDVETATELLL 251 (253)
T ss_dssp HHHHHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 4567777665 88888999999999999999999985
No 66
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=60.16 E-value=7.5 Score=31.18 Aligned_cols=27 Identities=15% Similarity=0.310 Sum_probs=22.8
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHh
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLN 48 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~ 48 (312)
--...||.+|.-||.|+.+.|+..+.+
T Consensus 67 ~KI~VIK~VR~itgLgLkEAK~lVe~a 93 (122)
T 2zjq_5 67 SKINVIKEIRGITGLGLKEAKDMSEKG 93 (122)
T ss_pred chHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 347899999999999999999876544
No 67
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=59.73 E-value=6.2 Score=31.91 Aligned_cols=29 Identities=14% Similarity=0.275 Sum_probs=24.9
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcC
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQ 50 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~g 50 (312)
--...||.+|.-||.|+.+.|+-.+.+..
T Consensus 69 ~KI~VIK~VR~itgLgLKEAK~lVe~aP~ 97 (128)
T 1dd3_A 69 NKIQVIKVVREITGLGLKEAKDLVEKAGS 97 (128)
T ss_dssp CHHHHHHHHHHHHCCCHHHHHHHHTTTTS
T ss_pred chHHHHHHHHHhcCCCHHHHHHHHHhCCc
Confidence 34689999999999999999998876644
No 68
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=59.21 E-value=7.8 Score=31.23 Aligned_cols=27 Identities=19% Similarity=0.313 Sum_probs=22.8
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHh
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLN 48 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~ 48 (312)
--...||.+|.-||.|+.+.|+-.+.+
T Consensus 70 ~KI~VIK~VR~itgLgLkEAK~lVe~a 96 (125)
T 2j01_L 70 KKLEVIKELRAITGLGLKEAKDLAEKG 96 (125)
T ss_pred chHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 346899999999999999999876544
No 69
>1q02_A Sequestosome 1; helical bundle, protein binding; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 2jy7_A 2jy8_A 2k0b_X 2knv_A 2rru_A 3b0f_A
Probab=55.61 E-value=8.2 Score=26.26 Aligned_cols=41 Identities=20% Similarity=0.294 Sum_probs=35.4
Q ss_pred ccCHHHHHHHHHHhCCCHHHHH----HHHHHhcCCHHHHHHHHHH
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCK----KALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCK----kAL~e~~gD~ekA~e~Lr~ 61 (312)
..+..++..|...-..||.+|- +.|+..+||+.+|++.|..
T Consensus 5 ~~D~rl~~al~qMl~MGF~negGWLt~LL~~k~gDI~~aLD~lq~ 49 (52)
T 1q02_A 5 EADPRLIESLSQMLSMGFSDEGGWLTRLLQTKNYDIGAALDTIQY 49 (52)
T ss_dssp TSCHHHHHHHHHHHTTTCCCTTSHHHHHHHHTTTCHHHHHHHHTT
T ss_pred CcChHHHHHHHHHHHcCCCccccHHHHHHHHccCCHHHHHHHhhh
Confidence 4567788889999999999884 8999999999999999864
No 70
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=55.36 E-value=13 Score=39.14 Aligned_cols=43 Identities=19% Similarity=0.339 Sum_probs=36.2
Q ss_pred ccCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy17364 21 TTNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAK 64 (312)
Q Consensus 21 ~~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~~~ 64 (312)
.++.+.|..|-. .|.....+++||.+++||++.|++||-....
T Consensus 718 ~~~~e~i~~l~~-mGf~~~~a~~aL~~t~~~~eraidwlfs~~d 760 (854)
T 3ihp_A 718 PPPEDCVTTIVS-MGFSRDQALKALRATNNSLERAVDWIFSHID 760 (854)
T ss_dssp -CCHHHHHHHHT-TTCCHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHH-cCCCHHHHHHHHHhhcCcHHHHHHhhhcCcc
Confidence 357778888855 6888999999999999999999999998643
No 71
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=54.83 E-value=5.3 Score=37.92 Aligned_cols=40 Identities=20% Similarity=0.234 Sum_probs=35.4
Q ss_pred cCHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 22 ~~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
...+.|.+|=.+ |.+-..|++||..|++|.+.|.+||-..
T Consensus 324 ee~eaI~rL~~m-GF~~~~a~~al~a~~~n~e~A~~~L~~~ 363 (368)
T 1oqy_A 324 QEKEAIERLKAL-GFPESLVIQAYFACEKNENLAANFLLSQ 363 (368)
T ss_dssp TTHHHHHHHHHH-TCCSHHHHHHTSSSSSCSSHHHHHHHHH
T ss_pred cCHHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHhhC
Confidence 467889888665 9999999999999999999999999864
No 72
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=51.05 E-value=20 Score=30.28 Aligned_cols=37 Identities=11% Similarity=0.087 Sum_probs=32.0
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
.+.|++|-.. |.+=-.|.+||..|++|.+.|..||-.
T Consensus 131 ~eaI~rL~~m-GF~r~~viqA~~ac~knee~Aan~L~~ 167 (171)
T 2qsf_X 131 DQAISRLCEL-GFERDLVIQVYFACDKNEEAAANILFS 167 (171)
T ss_dssp HHHHHHHHTT-TCCHHHHHHHHHHTTTCHHHHHHHHTT
T ss_pred HHHHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3578888766 788889999999999999999999974
No 73
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=48.82 E-value=28 Score=28.41 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=23.1
Q ss_pred CHHHHHHHHHH-hCCCHHHHHHHHHHh
Q psy17364 23 NKSLLGKLRKK-TGYSFTNCKKALDLN 48 (312)
Q Consensus 23 ~~~lik~LR~~-Tga~~~dCKkAL~e~ 48 (312)
-...||.+|.- ||.|+.+.|+-.+.+
T Consensus 81 KI~VIK~VR~i~TgLgLkEAK~lVe~a 107 (137)
T 2ftc_E 81 KVKLIKEIKNYVQGINLVQAKKLVESL 107 (137)
T ss_pred hhHHHHHHHHhccCCChHHHHHHHHhC
Confidence 47899999996 999999999988766
No 74
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=46.99 E-value=18 Score=30.33 Aligned_cols=28 Identities=25% Similarity=0.022 Sum_probs=23.8
Q ss_pred CCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 35 GYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 35 ga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
...--+|-+||..+.||++.|+..|...
T Consensus 114 ~~~~~~~~~aL~~~~Gdv~~Al~eLqr~ 141 (162)
T 4dbg_B 114 FGPEEGSLQALFQHGGDVSRALTELQRQ 141 (162)
T ss_dssp CCGGGTHHHHHHHTTTCHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 3446699999999999999999999863
No 75
>3bq3_A Defective in cullin neddylation protein 1; ubiquitin, ubiquitination,SCF,cullin, E3 E2, cell cycle, protein degradation, ligase; 1.90A {Saccharomyces cerevisiae} PDB: 2is9_A* 3o2p_A 3o6b_A 3tdi_B 2l4e_A 2l4f_A
Probab=45.99 E-value=23 Score=32.00 Aligned_cols=40 Identities=13% Similarity=0.067 Sum_probs=36.4
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 23 ~~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
..++|.+...-||++=..+..-|+.++||++.|+.-.-+.
T Consensus 15 ~~~~i~qF~~iTg~~~~~A~~~L~~~~WdLe~Al~~ff~~ 54 (270)
T 3bq3_A 15 EQEAIESFTSLTKCDPKVSRKYLQRNHWNINYALNDYYDK 54 (270)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 4668999999999999999999999999999999987653
No 76
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=42.00 E-value=5.4 Score=31.98 Aligned_cols=27 Identities=15% Similarity=0.315 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHhc
Q psy17364 23 NKSLLGKLRKKTGYSFTNCKKALDLNE 49 (312)
Q Consensus 23 ~~~lik~LR~~Tga~~~dCKkAL~e~~ 49 (312)
-...||.+|.-||.|+.+.|+..+.+.
T Consensus 66 Ki~VIK~VR~itgLgLkEAK~lVe~aP 92 (121)
T 3sgf_J 66 KVAVIKAVRGATGLGLKEAKDLVESAP 92 (121)
T ss_dssp ---------------------------
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHhCC
Confidence 467899999999999999998877653
No 77
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=39.26 E-value=8.2 Score=35.18 Aligned_cols=35 Identities=14% Similarity=0.019 Sum_probs=9.5
Q ss_pred HHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 27 LGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 27 ik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..-+++.||.+-.+|+++|++++|++..|+..+..
T Consensus 248 ~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~~ 282 (306)
T 1nri_A 248 VRIVMQATDCNKTLAEQTLLEADQNAKLAIMMILS 282 (306)
T ss_dssp HHHHHHHSCCCC-----------------------
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHHh
Confidence 45567789999999999999999999999998864
No 78
>2e2a_A Protein (enzyme IIA); helical bundles, PTS, transferase, phosphotransferase system; 2.10A {Lactococcus lactis} SCOP: a.7.2.1 PDB: 1e2a_A
Probab=36.92 E-value=30 Score=26.80 Aligned_cols=32 Identities=22% Similarity=0.258 Sum_probs=25.0
Q ss_pred HHHHhCCCHHHHHHHHHHh-cCCHHHHHHHHHH
Q psy17364 30 LRKKTGYSFTNCKKALDLN-EQDLGKAEKWLQE 61 (312)
Q Consensus 30 LR~~Tga~~~dCKkAL~e~-~gD~ekA~e~Lr~ 61 (312)
|=--.|-.=+.|-+||..+ +||+++|.+.|++
T Consensus 13 iI~~aG~ArS~~~eAl~~Ak~g~fe~A~~~l~e 45 (105)
T 2e2a_A 13 IVAYAGDARSKLLEALKAAENGDFAKADSLVVE 45 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3333455556889999988 6999999999997
No 79
>1wcr_A PTS system, N, N'-diacetylchitobiose-specific IIA component; mutagenesis, transferase, sugar transport, phosphotransferase; NMR {Escherichia coli} PDB: 2wy2_A 2wwv_A
Probab=36.22 E-value=32 Score=26.59 Aligned_cols=28 Identities=18% Similarity=0.251 Sum_probs=23.1
Q ss_pred hCCCHHHHHHHHHHh-cCCHHHHHHHHHH
Q psy17364 34 TGYSFTNCKKALDLN-EQDLGKAEKWLQE 61 (312)
Q Consensus 34 Tga~~~dCKkAL~e~-~gD~ekA~e~Lr~ 61 (312)
.|-.=+.|-+||..+ +||+++|.+.|++
T Consensus 15 aG~Ars~~~eAl~~Ak~g~fe~A~~~l~e 43 (103)
T 1wcr_A 15 SGQARSLAYAALKQAKQGDFAAAKAMMDQ 43 (103)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 344456788999988 6999999999997
No 80
>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=33.72 E-value=84 Score=22.63 Aligned_cols=39 Identities=13% Similarity=0.064 Sum_probs=34.2
Q ss_pred CHHHHHHHHHH-hCCCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 23 NKSLLGKLRKK-TGYSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 23 ~~~lik~LR~~-Tga~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
-.++|.++|+. -..|..-..+.|...|+|+|.++..|-+
T Consensus 13 l~s~I~qV~DLfPdLG~gfi~~~L~~y~~nvE~vin~LLE 52 (71)
T 2di0_A 13 LDSLISQVKDLLPDLGEGFILACLEYYHYDPEQVINNILE 52 (71)
T ss_dssp HHHHHHHHHHHCCSSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcccCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence 35788889986 4588888999999999999999999987
No 81
>3k1s_A PTS system, cellobiose-specific IIA component; all alpha protein, spectrin repeat-like, transferase, structural genomics; HET: MSE; 2.30A {Bacillus anthracis} SCOP: a.7.2.0
Probab=33.20 E-value=37 Score=26.46 Aligned_cols=34 Identities=15% Similarity=0.196 Sum_probs=26.1
Q ss_pred HHHHHHhCCCHHHHHHHHHHh-cCCHHHHHHHHHH
Q psy17364 28 GKLRKKTGYSFTNCKKALDLN-EQDLGKAEKWLQE 61 (312)
Q Consensus 28 k~LR~~Tga~~~dCKkAL~e~-~gD~ekA~e~Lr~ 61 (312)
-+|=--.|-.=..|-+||..+ +||+++|.+.|++
T Consensus 13 m~iI~~aG~Ars~~~eAl~~Ak~gdfe~A~~~l~e 47 (109)
T 3k1s_A 13 FQLILNSGNARSFAMEALQFAKQGKMAEADEAMVK 47 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444555556888999888 6999999999997
No 82
>3l8r_A PTCA, putative PTS system, cellobiose-specific IIA component; helix; 2.50A {Streptococcus mutans} SCOP: a.7.2.0
Probab=31.69 E-value=40 Score=26.78 Aligned_cols=34 Identities=26% Similarity=0.207 Sum_probs=27.0
Q ss_pred HHHHHHhCCCHHHHHHHHHHh-cCCHHHHHHHHHH
Q psy17364 28 GKLRKKTGYSFTNCKKALDLN-EQDLGKAEKWLQE 61 (312)
Q Consensus 28 k~LR~~Tga~~~dCKkAL~e~-~gD~ekA~e~Lr~ 61 (312)
-+|=--.|-.=..|-+||..+ +||+++|.+.|++
T Consensus 28 m~II~~aG~ARS~~~eAl~~Ak~gdfe~A~~~l~e 62 (120)
T 3l8r_A 28 FEIILNSGNARSIVHEAFDAMREKNYILAEQKLQE 62 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 444445566667899999988 6999999999997
No 83
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=25.68 E-value=95 Score=24.93 Aligned_cols=38 Identities=8% Similarity=0.120 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
...|+.|| ..|.++.+.|+-|...+.+.+...+.|.++
T Consensus 51 l~~I~~lr-~~G~sl~~I~~~l~~~~~~~~~~~~~L~~q 88 (146)
T 3hh0_A 51 LQQIQSFK-HLGFSLGEIQNIILQRDIETEVFLRQMHFQ 88 (146)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHTSSEEEHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 44567776 689999999999988878888887777765
No 84
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=23.13 E-value=2.1e+02 Score=22.72 Aligned_cols=40 Identities=23% Similarity=0.257 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh---cCCHHHHHHHHHHHHH
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLN---EQDLGKAEKWLQEQAK 64 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~---~gD~ekA~e~Lr~~~~ 64 (312)
...|+.|| ..|.++.+.|+-|... +.+.+...+.|+++..
T Consensus 49 l~~I~~lr-~~G~sL~eIk~~l~~~~~~~~~~~~~~~~L~~~~~ 91 (142)
T 3gp4_A 49 ILFTRQMR-RAGLSIEALIDYLALFREGEHTLEARAELLKKQRI 91 (142)
T ss_dssp HHHHHHHH-HTTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HcCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 45788886 5799999999998753 3466777777777533
No 85
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=22.62 E-value=66 Score=22.85 Aligned_cols=26 Identities=12% Similarity=0.202 Sum_probs=21.3
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhc
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLNE 49 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~~ 49 (312)
...|+.||+..|.++.+.|+.|...+
T Consensus 53 l~~I~~l~~~~G~sl~ei~~~l~~~~ 78 (81)
T 2jml_A 53 VRRVARLIQEEGLSVSEAIAQVKTEP 78 (81)
T ss_dssp HHHHHHHHHHTSTHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHccC
Confidence 45678888889999999999997654
No 86
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=22.39 E-value=1.1e+02 Score=25.40 Aligned_cols=38 Identities=13% Similarity=0.128 Sum_probs=27.8
Q ss_pred HHHHHHHHHhC--C---CHHHHHHHHHHhcCCHHHHHHHHHHH
Q psy17364 25 SLLGKLRKKTG--Y---SFTNCKKALDLNEQDLGKAEKWLQEQ 62 (312)
Q Consensus 25 ~lik~LR~~Tg--a---~~~dCKkAL~e~~gD~ekA~e~Lr~~ 62 (312)
+.|..|=.+.| . +-.+.|+||-.+.||+++|+......
T Consensus 59 ~~V~~la~~~~~~~g~~s~~EAr~Aw~~~~Gd~~~Av~~ci~~ 101 (162)
T 4dbg_B 59 EMVAELAGQQDPGLGAFSCQEARRAWLDRHGNLDEAVEECVRT 101 (162)
T ss_dssp HHHHHHHHHHCGGGCCCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCcccHHHHHHHHHHccCChHHHHHHHHHH
Confidence 34444444443 2 33799999999999999999887765
No 87
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=22.26 E-value=1.9e+02 Score=23.00 Aligned_cols=42 Identities=17% Similarity=0.288 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCHHHHHHHHHHh---cCCHHHHHHHHHHHHHhh
Q psy17364 24 KSLLGKLRKKTGYSFTNCKKALDLN---EQDLGKAEKWLQEQAKEL 66 (312)
Q Consensus 24 ~~lik~LR~~Tga~~~dCKkAL~e~---~gD~ekA~e~Lr~~~~k~ 66 (312)
...|+.||+ .|.++.+.|+-|... +.+.+...+.|.++.+..
T Consensus 63 l~~I~~lr~-~G~sL~eIk~~l~~~~~~~~~~~~~~~~l~~~~~~l 107 (148)
T 3gpv_A 63 LEMILCLKN-TGMPIQKIKQFIDWSMEGDSTILHRLKLMKQQEANV 107 (148)
T ss_dssp HHHHHHHHT-TTCCHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cCCCHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHH
Confidence 456777754 899999999999843 345667777777654433
No 88
>3tzl_A Tryptophanyl-tRNA synthetase; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta structure; HET: ADP TRP; 2.15A {Campylobacter jejuni subsp} SCOP: c.26.1.0 PDB: 3m5w_A*
Probab=22.16 E-value=1.5e+02 Score=27.17 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=21.0
Q ss_pred CHHHHHHHHHHh---CCCHHHHHHHHHHh
Q psy17364 23 NKSLLGKLRKKT---GYSFTNCKKALDLN 48 (312)
Q Consensus 23 ~~~lik~LR~~T---ga~~~dCKkAL~e~ 48 (312)
+.+-|.+|++.- +.+..+||++|.+.
T Consensus 244 ~~~~i~~l~~~~~~g~~~~~~~K~~lae~ 272 (322)
T 3tzl_A 244 DESGQKELQIRYEKGGEGYGHFKIYLNEL 272 (322)
T ss_dssp CHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 567788888753 67899999999775
No 89
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.66 E-value=1.4e+02 Score=21.58 Aligned_cols=42 Identities=17% Similarity=0.113 Sum_probs=36.1
Q ss_pred cccCHHHHHHHHHHhC-CCHHHHHHHHHHhcCCHHHHHHHHHH
Q psy17364 20 LTTNKSLLGKLRKKTG-YSFTNCKKALDLNEQDLGKAEKWLQE 61 (312)
Q Consensus 20 ~~~~~~lik~LR~~Tg-a~~~dCKkAL~e~~gD~ekA~e~Lr~ 61 (312)
..+.+.++.+||++-- .|-.-.-+-+.++++|+++.+..|.+
T Consensus 7 ~q~d~qvfheLkQrFPEvPd~VVsqc~~qN~~Nl~aC~~~L~q 49 (75)
T 2dae_A 7 GQIDFQVLHDLRQKFPEVPEVVVSRCMLQNNNNLDACCAVLSQ 49 (75)
T ss_dssp CCCCHHHHHHHHHHSSSSCHHHHHHHHTTTTSCSHHHHHHHHH
T ss_pred cchHHHHHHHHHHhcccCcHHHHHHHHHHhccCHHHHHHHHHH
Confidence 3478999999999954 77777777789999999999999997
Done!