RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17364
(312 letters)
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts),
dimerisation domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 111
Score = 95.5 bits (237), Expect = 3e-25
Identities = 43/110 (39%), Positives = 66/110 (60%), Gaps = 2/110 (1%)
Query: 76 GRKTSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEP 135
GRKT +GLI + EG +VE NCETDFV+RN +FQ + + ++L L + +
Sbjct: 1 GRKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLST 60
Query: 136 FAKVFLDTAQLQSL--AGPENKSLADHVAILISSVGENLVLRRAACVTVN 183
++K FL++++L L SL D +A+ I +GEN++L+RAA V V
Sbjct: 61 YSKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVKVP 110
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),
dimerisation domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 109
Score = 81.1 bits (200), Expect = 6e-20
Identities = 42/111 (37%), Positives = 67/111 (60%), Gaps = 6/111 (5%)
Query: 188 VAGFTHPSP-GLEHTGPILGKFGSLMVYQDLKTGDKQQNVQNVARQLCQHVIGMNPKSIG 246
V + H + +LGK+G+L++ +T + + N+ ++ R+L QHV+GM P S+G
Sbjct: 4 VGSYVHGAMHSPSLHNLVLGKYGALVI---CETSELKANLADLGRRLGQHVVGMAPLSVG 60
Query: 247 SEEDTPNEDPEEETIMYHQEFLLDPTQYVGEVIVAAGIKPVEFLRFECGEG 297
S +D P E ET M Q +LLDP+ +G+ + G+ V+F+RFECGEG
Sbjct: 61 SLDDEPGG--EAETKMLSQPYLLDPSITLGQYVQPHGVSVVDFVRFECGEG 109
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts),
dimerisation domain {Escherichia coli [TaxId: 562]}
Length = 85
Score = 68.3 bits (167), Expect = 2e-15
Identities = 23/103 (22%), Positives = 45/103 (43%), Gaps = 20/103 (19%)
Query: 79 TSQGLISIAVEGKHATMVEFNCETDFVARNKQFQGMAELISLACLNYTKTQVQPQEPFAK 138
+ G+I ++G + ++E NC+TDFVA++ FQ A+ + A +
Sbjct: 2 AADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAG------------- 48
Query: 139 VFLDTAQLQSLAGPENKSLADHVAILISSVGENLVLRRAACVT 181
++ L + L++ +GEN+ +RR A +
Sbjct: 49 ---KITDVEVL----KAQFEEERVALVAKIGENINIRRVAALE 84
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts),
N-terminal domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 56
Score = 63.1 bits (154), Expect = 6e-14
Identities = 31/52 (59%), Positives = 41/52 (78%)
Query: 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKL 74
+K LL KLR+KTGYSF NCKKAL+ DL +AE WL +QA++ GW+KA++L
Sbjct: 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARL 55
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 52
Score = 62.3 bits (152), Expect = 1e-13
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 22 TNKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAGR 77
+ L+ KLR+ TG + K+AL+ D KA + L+E+ G KA+K A R
Sbjct: 1 SQMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRER----GAMKAAKKADR 52
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 54
Score = 59.2 bits (144), Expect = 2e-12
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 23 NKSLLGKLRKKTGYSFTNCKKALDLNEQDLGKAEKWLQEQAKELGWAKASKLAG 76
SL+ +LR++TG +CKKAL D+ A + +++ G KA+K AG
Sbjct: 4 TASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKS----GAIKAAKKAG 53
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts),
dimerisation domain {Escherichia coli [TaxId: 562]}
Length = 143
Score = 47.6 bits (113), Expect = 2e-07
Identities = 20/86 (23%), Positives = 36/86 (41%), Gaps = 3/86 (3%)
Query: 221 DKQQNVQNVARQLCQHVIGMNPKSIGSEEDTPNEDPE---EETIMYHQEFLLDPTQYVGE 277
D V Q+ + + K E + E + Q F+++P++ VG+
Sbjct: 45 DVSAEVVEKEYQVQLDIAMQSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQ 104
Query: 278 VIVAAGIKPVEFLRFECGEGCEESEE 303
++ + F+RFE GEG E+ E
Sbjct: 105 LLKEHNAEVTGFIRFEVGEGIEKVET 130
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation
domain {Thermus thermophilus [TaxId: 274]}
Length = 142
Score = 29.7 bits (66), Expect = 0.25
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 6/44 (13%)
Query: 258 EETIMYHQEFLLDPTQYVGEVIVAAG------IKPVEFLRFECG 295
EE ++ Q F+ D V E+I A I F RFE G
Sbjct: 98 EEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELG 141
Score = 28.5 bits (63), Expect = 0.66
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 80 SQGLISIAV--EGKHATMVEFNCETDFVARNKQFQGMAELISLAC 122
+G+I + + +VE NCETDFVARN+ FQ +A+ +++
Sbjct: 2 REGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHI 46
>d1m9sa2 b.34.11.1 (A:391-465) Internalin B, C-terminal domains
{Listeria monocytogenes [TaxId: 1639]}
Length = 75
Score = 26.7 bits (59), Expect = 1.0
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 43 KALDLNEQDLGKAEKWLQEQAKELGWAKASKL 74
KAL ++ + + W + K +GW KA L
Sbjct: 43 KALTVDREARNGGKLWYR--LKNIGWTKAENL 72
>d1m9sa4 b.34.11.1 (A:552-629) Internalin B, C-terminal domains
{Listeria monocytogenes [TaxId: 1639]}
Length = 78
Score = 24.8 bits (54), Expect = 4.5
Identities = 8/37 (21%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 43 KALDLNEQDLGKAEKW--LQEQAKELGWAKASKLAGR 77
+ L ++ Q + + W ++ + +GW KA+ L +
Sbjct: 42 QKLIVDCQATIEGQLWYRIRTSSTFIGWTKAANLRAQ 78
>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC)
{Helicobacter pylori [TaxId: 210]}
Length = 265
Score = 26.0 bits (55), Expect = 5.5
Identities = 7/24 (29%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Query: 48 NEQDLGKAEKWLQEQAKELGWAKA 71
E+D +A+K+ E+A +L
Sbjct: 14 KEKDFTQAKKYF-EKACDLKENSG 36
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.373
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,052,509
Number of extensions: 45375
Number of successful extensions: 100
Number of sequences better than 10.0: 1
Number of HSP's gapped: 95
Number of HSP's successfully gapped: 14
Length of query: 312
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 227
Effective length of database: 1,240,546
Effective search space: 281603942
Effective search space used: 281603942
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 53 (24.9 bits)