BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17365
(646 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog
Protein From Pyrococcus Horikoshii
Length = 315
Score = 105 bits (262), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 68/185 (36%), Positives = 97/185 (52%), Gaps = 21/185 (11%)
Query: 153 ENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLV 212
E TG I QEA S PP+ LD + V D AAPG KT+ + ++ G++
Sbjct: 94 EFLTGLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRN-------DGVI 146
Query: 213 VANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVP 272
A DVD NR RL +I H +S+ ++ ++FD++L D P
Sbjct: 147 YAFDVDENRLRETRLNLSRLGV-LNVILFHSSSLHIG---------ELNVEFDKILLDAP 196
Query: 273 CTGDGTMRKNPDIWTKW--TPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
CTG GT+ KNP+ KW T + G+Q R++++G+E+L GG + YSTCSL P E+
Sbjct: 197 CTGSGTIHKNPE--RKWNRTXDDIKFCQGLQXRLLEKGLEVLKPGGILVYSTCSLEPEEN 254
Query: 331 EAVIQ 335
E VIQ
Sbjct: 255 EFVIQ 259
>pdb|2FRX|A Chain A, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|B Chain B, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|C Chain C, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
pdb|2FRX|D Chain D, Crystal Structure Of Yebu, A M5c Rna Methyltransferase
From E.Coli
Length = 479
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 97/210 (46%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA S +P L D +V D+ AAPGSKT QI A +N G
Sbjct: 91 EHLSGLFYIQEASSXLPVAALFADGNAPQRVXDVAAAPGSKTTQI----SARXNN---EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEXFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212 In Complex
With S-Adenosyl-L- Methionine
Length = 464
Score = 97.8 bits (242), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 98/205 (47%), Gaps = 21/205 (10%)
Query: 162 QEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNR 221
QE + +LLD + +VLD+ AAPG KT + + GL++AN+VD R
Sbjct: 86 QEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGG-------KGLLLANEVDGKR 138
Query: 222 CYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRK 281
L+ +R +P A+ + P +A G F RVL D PC+G+G RK
Sbjct: 139 VRGLLENVERWGAPLAV------TQAPPRALAEAFGTY----FHRVLLDAPCSGEGMFRK 188
Query: 282 NPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVET 341
+ + W PS + +Q ++ + +L GG + YSTC+ P E+E V+ + +
Sbjct: 189 DREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFL-KA 247
Query: 342 QGAVQLVDVSAITPALKYAPGLSQW 366
+L D + P +APG+ +W
Sbjct: 248 HPEFRLEDAR-LHPL--FAPGVPEW 269
>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6U|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group 43
pdb|3M6V|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
pdb|3M6V|B Chain B, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P2 In Complex With
S-Adenosyl-L- Methionine
Length = 464
Score = 97.8 bits (242), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 59/196 (30%), Positives = 95/196 (48%), Gaps = 21/196 (10%)
Query: 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAK 230
+LLD + +VLD+ AAPG KT + + GL++AN+VD R L+ +
Sbjct: 95 VLLDPKPGERVLDLAAAPGGKTTHLAARMGG-------KGLLLANEVDGKRVRGLLENVE 147
Query: 231 RLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWT 290
R +P A+ + P +A G F RVL D PC+G+G RK+ + W
Sbjct: 148 RWGAPLAV------TQAPPRALAEAFGTY----FHRVLLDAPCSGEGMFRKDREAARHWG 197
Query: 291 PSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDV 350
PS + +Q ++ + +L GG + YSTC+ P E+E V+ + + +L D
Sbjct: 198 PSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFL-KAHPEFRLEDA 256
Query: 351 SAITPALKYAPGLSQW 366
+ P +APG+ +W
Sbjct: 257 R-LHPL--FAPGVPEW 269
>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From
Thermus Thermophilus In Space Group P21212
Length = 464
Score = 95.9 bits (237), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 96/205 (46%), Gaps = 21/205 (10%)
Query: 162 QEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNR 221
QE + +LLD + +VLD+ AAPG KT + GL++AN+VD R
Sbjct: 86 QEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARXGG-------KGLLLANEVDGKR 138
Query: 222 CYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRK 281
L+ +R +P A+ + P +A G F RVL D PC+G+G RK
Sbjct: 139 VRGLLENVERWGAPLAV------TQAPPRALAEAFGTY----FHRVLLDAPCSGEGXFRK 188
Query: 282 NPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVET 341
+ + W PS +Q ++ + +L GG + YSTC+ P E+E V+ + +
Sbjct: 189 DREAARHWGPSAPKRXAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFL-KA 247
Query: 342 QGAVQLVDVSAITPALKYAPGLSQW 366
+L D + P +APG+ +W
Sbjct: 248 HPEFRLEDAR-LHPL--FAPGVPEW 269
>pdb|3M4X|A Chain A, Structure Of A Ribosomal Methyltransferase
Length = 456
Score = 92.4 bits (228), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 89/195 (45%), Gaps = 23/195 (11%)
Query: 144 SKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAAD 203
S LHQ G+ QE + I + KVLD+CAAPG K+ Q+
Sbjct: 79 SFLHQ-------AGYEYSQEPSAXIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQXKG-- 129
Query: 204 SNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMK 263
GL+V N++ R +L +R AI+TNH P L G
Sbjct: 130 -----KGLLVTNEIFPKRAKILSENIERWGVSNAIVTNH----APAELVPHFSGF----- 175
Query: 264 FDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323
FDR++ D PC+G+G RK+P+ +WT + Q I+ ++ L G++ YSTC
Sbjct: 176 FDRIVVDAPCSGEGXFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKXLKNKGQLIYSTC 235
Query: 324 SLNPLEDEAVIQRLI 338
+ P E+E +I L+
Sbjct: 236 TFAPEENEEIISWLV 250
>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3A4T|B Chain B, Crystal Structure Of Atrm4 From M.Jannaschii With
Sinefungin
pdb|3AJD|A Chain A, Crystal Structure Of Atrm4
Length = 274
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 18/200 (9%)
Query: 153 ENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLV 212
E G+ Q SMIPP++L+ + +LDMCAAPG KT + +++ G +
Sbjct: 59 EYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKN-------KGTI 111
Query: 213 VANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVP 272
VA ++ R L R+ II N D + L + + FD++L D P
Sbjct: 112 VAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNE------IFFDKILLDAP 165
Query: 273 CTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEA 332
C+G+ KN ++ + + Q ++ G+++L G++ YSTCS+ E+E
Sbjct: 166 CSGNIIKDKNRNV----SEEDIKYCSLRQKELIDIGIDLLKKDGELVYSTCSMEVEENEE 221
Query: 333 VIQRLIVETQGAVQLVDVSA 352
VI + I++ + V+L+ + A
Sbjct: 222 VI-KYILQKRNDVELIIIKA 240
>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851
Length = 450
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 53/182 (29%), Positives = 86/182 (47%), Gaps = 15/182 (8%)
Query: 157 GHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAND 216
G I QE S + ++LD + V+D+ AAPG KT + E++ G + A D
Sbjct: 239 GKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKN-------KGKIYAFD 291
Query: 217 VDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGD 276
VD R L KR+ DA P ++ G +V D+VL D PCT
Sbjct: 292 VDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEII-----GEEVA---DKVLLDAPCTSS 343
Query: 277 GTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQR 336
GT+ KNP++ + N + +Q +++ ++ GG++ Y+TCS+ E+E I+
Sbjct: 344 GTIGKNPELRWRLREDKINEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRW 403
Query: 337 LI 338
+
Sbjct: 404 FL 405
>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With
S- Adenosylmethionine At 2.1 A Resolution
pdb|1SQG|A Chain A, The Crystal Structure Of The E. Coli Fmu Apoenzyme At 1.65
A Resolution
Length = 429
Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 87/190 (45%), Gaps = 21/190 (11%)
Query: 157 GHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAND 216
G ++ Q+A + L Q +LD+CAAPG KT I+E+ P VVA D
Sbjct: 226 GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEV--------APEAQVVAVD 277
Query: 217 VDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGD 276
+D R + KRL A + D P+ + +FDR+L D PC+
Sbjct: 278 IDEQRLSRVYDNLKRLGMK-ATVKQGDGRY-PSQWCGE-------QQFDRILLDAPCSAT 328
Query: 277 GTMRKNPDIWTKWTPSNGN--NLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVI 334
G +R++PDI KW + + L +Q I+ L GG + Y+TCS+ P E+ I
Sbjct: 329 GVIRRHPDI--KWLRRDRDIPELAQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQI 386
Query: 335 QRLIVETQGA 344
+ + T A
Sbjct: 387 KAFLQRTADA 396
>pdb|4FZV|A Chain A, Crystal Structure Of The Human Mterf4:nsun4:sam Ternary
Complex
Length = 359
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 32/194 (16%)
Query: 163 EAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRC 222
+A S++P L L +Q VLD+CAAPG KT +++ + + AND+ +R
Sbjct: 134 DAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRN--------LAANDLSPSRI 185
Query: 223 YMLVHQAKRLNS--PCAIITNHDASVMPNVLYTDADGNKVPM----KFDRVLCDVPCTGD 276
L K L+S P I + V T DG K +DRVL DVPCT D
Sbjct: 186 ARL---QKILHSYVPEEIRDGNQVRV------TSWDGRKWGELEGDTYDRVLVDVPCTTD 236
Query: 277 --GTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVI 334
+ +I+ + L +Q +++ G+ GG + YSTCSL+ L++E V+
Sbjct: 237 RHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV 296
Query: 335 QRLIVETQGAVQLV 348
QGA++L+
Sbjct: 297 -------QGAIELL 303
>pdb|4FP9|A Chain A, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|C Chain C, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|D Chain D, Human Mterf4-Nsun4 Protein Complex
pdb|4FP9|F Chain F, Human Mterf4-Nsun4 Protein Complex
Length = 360
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 60/194 (30%), Positives = 92/194 (47%), Gaps = 32/194 (16%)
Query: 163 EAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRC 222
+A S++P L L +Q VLD+CAAPG KT +++ + + AND+ +R
Sbjct: 135 DAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGCCRN--------LAANDLSPSRI 186
Query: 223 YMLVHQAKRLNS--PCAIITNHDASVMPNVLYTDADGNKVPM----KFDRVLCDVPCTGD 276
L K L+S P I + V T DG K +DRVL DVPCT D
Sbjct: 187 ARL---QKILHSYVPEEIRDGNQVRV------TSWDGRKWGELEGDTYDRVLVDVPCTTD 237
Query: 277 --GTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVI 334
+ +I+ + L +Q +++ G+ GG + YSTCSL+ L++E V+
Sbjct: 238 RHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGLLATKPGGHVVYSTCSLSHLQNEYVV 297
Query: 335 QRLIVETQGAVQLV 348
QGA++L+
Sbjct: 298 -------QGAIELL 304
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 63/242 (26%), Positives = 102/242 (42%), Gaps = 21/242 (8%)
Query: 156 TGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAN 215
GH+ Q+ S +P +LLD V+D CAAPG+KT+ + ++ G + A
Sbjct: 81 AGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKN-------QGKIFAF 133
Query: 216 DVDNNRCYMLVHQAKRLNSPCAIITNHD-ASVMPNVLYTDADGNKVPMKFDRVLCDVPCT 274
D+D R + R C + D +V P +D ++V +L D C+
Sbjct: 134 DLDAKRLASMATLLARAGVSCCELAEEDFLAVSP----SDPRYHEV----HYILLDPSCS 185
Query: 275 GDGTMRKNPDIWTKWTPS--NGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEA 332
G G + + TPS + L G Q R + + ++ ++ YSTCSL E+E
Sbjct: 186 GSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSL-QRLVYSTCSLCQEENED 244
Query: 333 VIQRLIVETQGAVQLVDVSAITP--ALKYAPGLSQWRPASKDNLDGYGSFDEVPDKWKTQ 390
V++ + + GA +L P L PG AS + G F V ++ +
Sbjct: 245 VVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHCLRASPETTLSSGFFVAVIERVEVP 304
Query: 391 VR 392
R
Sbjct: 305 RR 306
>pdb|1J5Q|A Chain A, The Structure And Evolution Of The Major Capsid Protein Of
A Large, Lipid-Containing, Dna Virus.
pdb|1J5Q|B Chain B, The Structure And Evolution Of The Major Capsid Protein Of
A Large, Lipid-Containing, Dna Virus.
pdb|3KK5|A Chain A, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|B Chain B, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|C Chain C, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|D Chain D, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|E Chain E, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|F Chain F, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|G Chain G, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|H Chain H, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|I Chain I, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|J Chain J, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|K Chain K, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|L Chain L, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
pdb|3KK5|M Chain M, Crystal Structure Of Pbcv-1 Vp54 Fitted Into A Cryo-Em
Reconstruction Of The Virophage Sputnik
Length = 437
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 522 TGVKSFARCDNKVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILN 571
+G +F+R DN + ++ C +S A +G V N L+T LN
Sbjct: 366 SGTCNFSRIDNATLSLTYKTCSIDATSPAAVLGNTETVTANTATLLTALN 415
>pdb|1M4X|A Chain A, Pbcv-1 Virus Capsid, Quasi-Atomic Model
pdb|1M4X|B Chain B, Pbcv-1 Virus Capsid, Quasi-Atomic Model
pdb|1M4X|C Chain C, Pbcv-1 Virus Capsid, Quasi-Atomic Model
Length = 413
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 522 TGVKSFARCDNKVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILN 571
+G +F+R DN + ++ C +S A +G V N L+T LN
Sbjct: 342 SGTCNFSRIDNATLSLTYKTCSIDATSPAAVLGNTETVTANTATLLTALN 391
>pdb|1M3Y|A Chain A, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|B Chain B, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|C Chain C, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
pdb|1M3Y|D Chain D, The Structure Of Major Capsid Protein Of A Large, Lipid
Containing, Dna Virus
Length = 413
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 522 TGVKSFARCDNKVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILN 571
+G +F+R DN + ++ C +S A +G V N L+T LN
Sbjct: 342 SGTCNFSRIDNATLSLTYKTCSIDATSPAAVLGNTETVTANTATLLTALN 391
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,203,012
Number of Sequences: 62578
Number of extensions: 792787
Number of successful extensions: 2116
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2079
Number of HSP's gapped (non-prelim): 16
length of query: 646
length of database: 14,973,337
effective HSP length: 105
effective length of query: 541
effective length of database: 8,402,647
effective search space: 4545832027
effective search space used: 4545832027
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)