BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17365
(646 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9W4M9|NSUN2_DROME tRNA (cytosine(34)-C(5))-methyltransferase OS=Drosophila
melanogaster GN=CG6133 PE=2 SV=1
Length = 746
Score = 616 bits (1588), Expect = e-175, Method: Compositional matrix adjust.
Identities = 323/685 (47%), Positives = 448/685 (65%), Gaps = 57/685 (8%)
Query: 9 NRNKSFAQKRREKEQKKANPKTDTRHENYAEIVRENKDFEQYYKAQKICP-ENEWDSMLE 67
N+ ++F R+ ++++ +TD + + Y EI R+N F +YY+ QKIC + EW L
Sbjct: 4 NQKQNFFAARKRQKRENGPKRTDRQAQPYEEIKRDNAFFIKYYQLQKICATDEEWTQFLA 63
Query: 68 TLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVND----QETSEEEKVAPICLPWYP 123
+++ +LPT FR+T +EAKALLSI+E++ F E V + + E+ P+CLPWYP
Sbjct: 64 SIRDNLPTTFRVTGFK-DEAKALLSIIETQLFTEYVRAVAELHQKAPEDVERPLCLPWYP 122
Query: 124 EQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLD 183
+ +QL L+R+ IR S+ +LH FLI+E G ISRQEAVSMIPP++LDV+ KVLD
Sbjct: 123 NGLAYQLHLTRKDIRRSEPLYRLHNFLIVETTAGGISRQEAVSMIPPIVLDVRPTDKVLD 182
Query: 184 MCAAPGSKTAQIIEMIHAA-DSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNH 242
MCAAPGSKTAQ+IE +HAA + + +P G V+ANDVDNNRCYMLVHQAKRLNSPC ++TNH
Sbjct: 183 MCAAPGSKTAQLIEALHAAPEEHKIPPGFVLANDVDNNRCYMLVHQAKRLNSPCLLVTNH 242
Query: 243 DASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQY 302
D+SV PN++ T DG+K +KFD++LCDVPC+GDGT+RKNPDIW KW + NLHGIQY
Sbjct: 243 DSSVFPNLVTTKPDGSKAILKFDKILCDVPCSGDGTLRKNPDIWLKWNLAQAYNLHGIQY 302
Query: 303 RIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALKYAPG 362
RIV+RG EML VGG++ YSTCSLNP+E+EAV+QR+I + GA++LVD + P LKY PG
Sbjct: 303 RIVRRGAEMLEVGGRLVYSTCSLNPIENEAVLQRIIKDADGALELVDAGHLVPGLKYKPG 362
Query: 363 LSQWRPASKDNLDGYGSFDEVPDKWKTQVRPQMFPTGDPSHH-----LERCSVFGLLPHQ 417
++ W+ A+K+ + F+EVP+ T +RP MFP P+ LE+C +LPH
Sbjct: 363 MTDWKLATKEVDQIFTRFEEVPESLHTIIRPGMFPL--PADEMAKIGLEKC--LRVLPHL 418
Query: 418 QG----------------------------------PRAD-NGEAESKPEPEASSPTREP 442
Q P A+ +A+ KP E S P
Sbjct: 419 QDSGGFFVAVLEKRRQLSFEKNDVVELVKLNETAKQPAAEPQVDADGKPIEEKSVPW--- 475
Query: 443 PSKKRKRQPQGYKEDPFVFFNTDEAVWPPIRDFYEISPSLPVDCLLTRCLVGKKKIIYFT 502
+++KR+ GYKEDP+VFF ++ + I++FY++ SL CLLTRC+ KKK IY+
Sbjct: 476 GPQRKKRRLHGYKEDPYVFFGENDPDYQAIKEFYQLDESLSQRCLLTRCVTEKKKNIYYC 535
Query: 503 SPMVKNIIQSNENNLKIINTGVKSFARCDNKVMGCAFRFCQEGLSSMKAFIGEKRKVRVN 562
S +++++ +NENN+KIINTGVK+F RC+N+ FR QEGL + AF+G R+++V
Sbjct: 536 SEPIRDLVLNNENNIKIINTGVKTFVRCENRHTVHPFRLAQEGLQTSNAFMGASRRIQVE 595
Query: 563 REELITILNNSTPEQPTDLELLRPETRQTLTREGFGVGSCLLELQDD-LPLSLVGWRGKS 621
RE+L+ +LN + P QP L+ ET++ GVGSC+L+ D L VGWRG S
Sbjct: 596 REDLVMMLNCTDPTQPPSTHELKKETQERCKE--LGVGSCILKYVDQRFTLYTVGWRGTS 653
Query: 622 SVRAYISGSDLVHYLRLLGADVSKF 646
S+RAY+ + +H LRLLGAD+SKF
Sbjct: 654 SLRAYVQKDETIHILRLLGADLSKF 678
>sp|Q1HFZ0|NSUN2_MOUSE tRNA (cytosine(34)-C(5))-methyltransferase OS=Mus musculus GN=Nsun2
PE=1 SV=2
Length = 757
Score = 545 bits (1405), Expect = e-154, Method: Compositional matrix adjust.
Identities = 305/723 (42%), Positives = 420/723 (58%), Gaps = 102/723 (14%)
Query: 4 GRRFHNRNKSFAQKRREKEQKKANPKTDTRHE-----NYAEIVRENKDFEQYYKAQKICP 58
GRR R + F Q + + ++ A+ R + Y EIV+ENK FE YY+ KI P
Sbjct: 2 GRR--ARGRRFQQPPQPEGEEDASDGGRKRGQAGWEGGYPEIVKENKLFEHYYQELKIVP 59
Query: 59 ENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPIC 118
E EWD +E+L++ LP RIT AK +L +++K+FKEL D E ++ P
Sbjct: 60 EGEWDQFMESLREPLPATLRITGYK-SHAKEILHCLKNKYFKEL-EDLEVDGQKVEVPQP 117
Query: 119 LPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTH 178
L WYPE++ W LSR+ +R S +K HQFL+ E +G+ISRQEAVSMIPPLLL+V+ H
Sbjct: 118 LSWYPEELAWHTNLSRKILRKSPLLAKFHQFLVSETESGNISRQEAVSMIPPLLLNVEPH 177
Query: 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAI 238
HK+LDMCAAPGSKT Q+IEM+HA S P P G V+ANDVDN RCY+LVHQAKRL+SPC +
Sbjct: 178 HKILDMCAAPGSKTTQLIEMLHADMSVPFPEGFVIANDVDNKRCYLLVHQAKRLSSPCIM 237
Query: 239 ITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLH 298
+ NHDAS +P L D DG K + +DR+LCDVPC+GDGTMRKN D+W KWT N LH
Sbjct: 238 VVNHDASSIPR-LTVDVDGRKEILFYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLH 296
Query: 299 GIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALK 358
G+Q RI RG E LA GG++ YSTCSLNP+EDEAVI L+ +++GA++L DVSA P LK
Sbjct: 297 GLQLRIATRGAEQLAEGGRMVYSTCSLNPVEDEAVIAALLEKSEGALELADVSAELPGLK 356
Query: 359 YAPGLSQWRPASKDNLDGYGSFDEVPDKWKTQVRPQMFPTGD----PSHHLERCSVFGLL 414
+ PG+SQW+ ++D + + EVP TQ+RP MFP D + HLERC +L
Sbjct: 357 WMPGVSQWKVMTRDG-QWFADWHEVPQGRHTQIRPTMFPPTDLEKLQAMHLERC--LRIL 413
Query: 415 PHQQG---------------------PRADNGEAESKPEPEASS--------PTRE---- 441
PH Q P+ N AE++ EP SS P+ +
Sbjct: 414 PHHQNTGGFFVAVLVKKAPMPWNKRQPKVQNKSAEAR-EPRVSSHVAATEGNPSDQSELE 472
Query: 442 -------------------------------PPSKKRKRQPQGYKEDPFVFFNTDEAVWP 470
PPSKK K G+KEDPFVF D+ ++P
Sbjct: 473 SQMITGAGDSETAHNTENTESNEKKDGVCGPPPSKKMKL--FGFKEDPFVFIPEDDPLFP 530
Query: 471 PIRDFYEISPSLPVDCLLTRCLVGKKKIIYFTSPMVKNIIQSNENNLKIINTGVKSFARC 530
PI FY + PS P LLTR GKK+ +Y S ++N++ +N +K+INTG+K + R
Sbjct: 531 PIEKFYALDPSFPRMNLLTRTTEGKKRQLYMVSKELRNVLLNNSEKMKVINTGIKVWCRN 590
Query: 531 DN-KVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILNNSTPEQPTDLELLRPETR 589
++ + CAFR QEG+ ++ FI R + V+ E++ T+L P R +
Sbjct: 591 NSGEEFDCAFRLAQEGIYTLYPFIN-SRIITVSMEDVKTLLTQENP-------FFRKLSS 642
Query: 590 QTLTR-EGFGVGSCLLELQDD--------LPLSLVGWRGKSSVRAYISGSDLVHYLRLLG 640
+ ++ + GS +L+ + D P+ L GWRGK+S+R ++ ++ +HYLR++G
Sbjct: 643 EAYSQVKDLAKGSVVLKYEPDSANPDTLQCPIVLCGWRGKASIRTFVPKNERLHYLRMMG 702
Query: 641 ADV 643
+V
Sbjct: 703 LEV 705
>sp|Q5ZLV4|NSUN2_CHICK tRNA (cytosine(34)-C(5))-methyltransferase OS=Gallus gallus
GN=NSUN2 PE=2 SV=1
Length = 796
Score = 528 bits (1359), Expect = e-149, Method: Compositional matrix adjust.
Identities = 283/680 (41%), Positives = 400/680 (58%), Gaps = 84/680 (12%)
Query: 37 YAEIVRENKDFEQYYKAQKICPENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVES 96
Y EIV+EN+ FE+YY+ Q+I P+ EWD+ + L++ LP RIT A+ +L ++
Sbjct: 38 YPEIVKENELFERYYREQRIVPDGEWDAFMAALREPLPATLRITGYK-SHAREILHCLKE 96
Query: 97 KFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENAT 156
K+F+EL E ++ P L WYPE++ W LSR+ +R S + HQFL+ E
Sbjct: 97 KYFREL-QHLEVDGQKVEMPQALSWYPEELAWHTNLSRKILRKSPQLERFHQFLVSETEC 155
Query: 157 GHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAND 216
G+ISRQEAVSMIPPLLL+V HK+LDMCAAPGSKTAQ+IEM+HA + P P G V+AND
Sbjct: 156 GNISRQEAVSMIPPLLLNVNPDHKILDMCAAPGSKTAQLIEMLHADMNVPFPKGFVIAND 215
Query: 217 VDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGD 276
VDN RCY+LVHQAKRLNSPC ++ NHDAS +PN L D DG K + +DR+LCDVPC+GD
Sbjct: 216 VDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPN-LQVDVDGRKETLFYDRILCDVPCSGD 274
Query: 277 GTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQR 336
GTMRKN D+W KWT N LHG+Q RI RGVE LA GG++ YSTCSLNP+E+EAVI
Sbjct: 275 GTMRKNIDVWKKWTTQNSLQLHGLQLRIATRGVEQLAEGGRMVYSTCSLNPIENEAVIAS 334
Query: 337 LIVETQGAVQLVDVSAITPALKYAPGLSQWRPASKDNLDGYGSFDEVPDKWKTQVRPQMF 396
L+ ++QGA++L DVS+ P LK PG+++W+ KD + + +VP +TQ+RP MF
Sbjct: 335 LLEKSQGALELADVSSELPGLKRMPGITKWKVMLKDG-QWFEEWKDVPSNRQTQIRPTMF 393
Query: 397 PTGD----PSHHLERCSVFGLLPHQQGP-----------------------------RAD 423
P + + +LERC +LPH Q + +
Sbjct: 394 PIKEEEKLKAMNLERC--IRILPHHQNTGGFFVAVLIKKSPMPWNKRQPKVHQKLPGKTE 451
Query: 424 NGEAESKPEPEASSPTREPPSKKRKRQPQ-----------------------------GY 454
+ E + + S E P+ +P+ G+
Sbjct: 452 DTEVTATNAGDGSEDATEKPTLAEDEEPKKVQELQNSDTEQSKKGVCGPPPSKKMKLFGF 511
Query: 455 KEDPFVFFNTDEAVWPPIRDFYEISPSLPVDCLLTRCLVGKKKIIYFTSPMVKNIIQSNE 514
KEDPFVF D+ ++ PI+ FY + PS P LLTR GKK+ +Y S ++N++ +N
Sbjct: 512 KEDPFVFLPEDDPLFLPIQKFYALDPSFPKMNLLTRTQEGKKRQLYMVSKELRNVLLNNS 571
Query: 515 NNLKIINTGVKSFAR-CDNKVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILNNS 573
+K+INTG+K ++R D + GCAFR QEG+ ++ FI R V V E++ +L
Sbjct: 572 EKMKVINTGIKVWSRNSDGEQFGCAFRLAQEGIYTLYPFI-HARIVNVCIEDVKILLTQE 630
Query: 574 TPEQPTDLELLRPETRQTLTREGFGVGSCLLELQ------DDL--PLSLVGWRGKSSVRA 625
P L ET++ + + +GS +L+ + DDL P+ L GW+GK+S+RA
Sbjct: 631 NP----FLSKFSSETQRKV--KDMAMGSIVLKYEPDPEKPDDLQCPIVLCGWQGKTSLRA 684
Query: 626 YISGSDLVHYLRLLGADVSK 645
++ ++ +HYLR++G +V K
Sbjct: 685 FVPKNERLHYLRMMGVEVFK 704
>sp|Q08J23|NSUN2_HUMAN tRNA (cytosine(34)-C(5))-methyltransferase OS=Homo sapiens GN=NSUN2
PE=1 SV=2
Length = 767
Score = 526 bits (1355), Expect = e-148, Method: Compositional matrix adjust.
Identities = 289/684 (42%), Positives = 396/684 (57%), Gaps = 90/684 (13%)
Query: 36 NYAEIVRENKDFEQYYKAQKICPENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVE 95
Y EIV+ENK FE YY+ KI PE EW ++ L++ LP RIT AK +L ++
Sbjct: 37 GYPEIVKENKLFEHYYQELKIVPEGEWGQFMDALREPLPATLRITGYK-SHAKEILHCLK 95
Query: 96 SKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENA 155
+K+FKEL D E ++ P L WYPE++ W LSR+ +R S K HQFL+ E
Sbjct: 96 NKYFKEL-EDLEVDGQKVEVPQPLSWYPEELAWHTNLSRKILRKSPHLEKFHQFLVSETE 154
Query: 156 TGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAN 215
+G+ISRQEAVSMIPPLLL+V+ HHK+LDMCAAPGSKT Q+IEM+HA + P P G V+AN
Sbjct: 155 SGNISRQEAVSMIPPLLLNVRPHHKILDMCAAPGSKTTQLIEMLHADMNVPFPEGFVIAN 214
Query: 216 DVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTG 275
DVDN RCY+LVHQAKRL+SPC ++ NHDAS +P L D DG K + +DR+LCDVPC+G
Sbjct: 215 DVDNKRCYLLVHQAKRLSSPCIMVVNHDASSIPR-LQIDVDGRKEILFYDRILCDVPCSG 273
Query: 276 DGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQ 335
DGTMRKN D+W KWT N LHG+Q RI RG E LA GG++ YSTCSLNP+EDEAVI
Sbjct: 274 DGTMRKNIDVWKKWTTLNSLQLHGLQLRIATRGAEQLAEGGRMVYSTCSLNPIEDEAVIA 333
Query: 336 RLIVETQGAVQLVDVSAITPALKYAPGLSQWRPASKDNLDGYGSFDEVPDKWKTQVRPQM 395
L+ +++GA++L DVS P LK+ PG++QW+ +KD + +D VP TQ+RP M
Sbjct: 334 SLLEKSEGALELADVSNELPGLKWMPGITQWKVMTKDG-QWFTDWDAVPHSRHTQIRPTM 392
Query: 396 FPTGDPS---------------HHLERCSVFGLL-------------PHQQGPRADNGEA 427
FP DP HH F + P QG A+ E+
Sbjct: 393 FPPKDPEKLQAMHLERCLRILPHHQNTGGFFVAVLVKKSSMPWNKRQPKLQGKSAETRES 452
Query: 428 ---------ESKP---------------EPEASSPTRE--------------PPSKKRKR 449
E KP + E + T + PPSKK K
Sbjct: 453 TQLSPADLTEGKPTDPSKLESPSFTGTGDTEIAHATEDLENNGSKKDGVCGPPPSKKMKL 512
Query: 450 QPQGYKEDPFVFFNTDEAVWPPIRDFYEISPSLPVDCLLTRCLVGKKKIIYFTSPMVKNI 509
G+KEDPFVF D+ ++PPI FY + PS P LLTR GKK+ +Y S ++N+
Sbjct: 513 F--GFKEDPFVFIPEDDPLFPPIEKFYALDPSFPRMNLLTRTTEGKKRQLYMVSKELRNV 570
Query: 510 IQSNENNLKIINTGVKSFARCDN-KVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELIT 568
+ +N +K+INTG+K + R ++ + CAFR QEG+ ++ FI R + V+ E++
Sbjct: 571 LLNNSEKMKVINTGIKVWCRNNSGEEFDCAFRLAQEGIYTLYPFIN-SRIITVSMEDVKI 629
Query: 569 ILNNSTPEQPTDLELLRPETRQTLTR-EGFGVGSCLLELQDD--------LPLSLVGWRG 619
+L P R + +T ++ + GS +L+ + D P+ L GWRG
Sbjct: 630 LLTQENP-------FFRKLSSETYSQAKDLAKGSIVLKYEPDSANPDALQCPIVLCGWRG 682
Query: 620 KSSVRAYISGSDLVHYLRLLGADV 643
K+S+R ++ ++ +HYLR++G +V
Sbjct: 683 KASIRTFVPKNERLHYLRMMGLEV 706
>sp|Q4V7N2|NSUN2_XENLA tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus laevis
GN=nsun2 PE=2 SV=1
Length = 698
Score = 425 bits (1093), Expect = e-118, Method: Compositional matrix adjust.
Identities = 210/403 (52%), Positives = 279/403 (69%), Gaps = 11/403 (2%)
Query: 20 EKEQKKANPKTDTRHENYAEIVRENKDFEQYYKAQKICPENEWDSMLETLKKDLPTAFRI 79
E+E++KA + Y EI++ENK FE YY+ KI P+ EWD ++ L++ LP RI
Sbjct: 20 EEERRKAREQA-AWEGGYPEIIKENKLFEHYYQELKIVPDGEWDKFMDALREPLPATIRI 78
Query: 80 TNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRT 139
T AK +L ++ K+FKEL D E ++ AP L WYPE++ W LSR+ IR
Sbjct: 79 TGYK-SHAKEILHCLKEKYFKEL-PDIEVDGQKIEAPQPLSWYPEELAWHTNLSRKIIRK 136
Query: 140 SQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMI 199
S K HQFL+ E +G+ISRQEAVSMIPP+LL+VQ HHK+LDMCAAPGSKTAQIIEM+
Sbjct: 137 SPELEKFHQFLVSETESGNISRQEAVSMIPPVLLNVQPHHKILDMCAAPGSKTAQIIEML 196
Query: 200 HAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259
HA + P P G V+ANDVDN RCY+LVHQAKRLNSPC ++ NHDAS +P +L + +G++
Sbjct: 197 HADMNVPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLL-IENNGSR 255
Query: 260 VPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319
+ +DR+LCDVPC+GDGTMRKN D+W KWT N LHG+Q RI RGVE LA GG++
Sbjct: 256 EVLYYDRILCDVPCSGDGTMRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMV 315
Query: 320 YSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALKYAPGLSQWRPASKDNLDGYGS 379
YSTCSLNP+EDEAVI L+ +++G+++L DV++ P LK+ PG++QWR +K+ +
Sbjct: 316 YSTCSLNPVEDEAVIVSLLDKSEGSLELADVASELPGLKWMPGITQWRVMTKEG-QWFEK 374
Query: 380 FDEVPDKWKTQVRPQMFPTGD----PSHHLERCSVFGLLPHQQ 418
+++VP TQ+RP MFP D S +L RC +LPH Q
Sbjct: 375 WEDVPTSRHTQIRPTMFPLKDEEKLKSMNLNRC--MRILPHHQ 415
Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 79/219 (36%), Positives = 118/219 (53%), Gaps = 22/219 (10%)
Query: 422 ADNGEAESKPEPEASSPTRE----PPSKKRKRQPQGYKEDPFVFFNTDEAVWPPIRDFYE 477
A+NGE + SS T PPSKK K G+KEDPFVF + D+ ++ PI+ FY
Sbjct: 475 AENGETKPCTNQSGSSKTDSVCCPPPSKKMKLF--GFKEDPFVFLSEDDPIFEPIQKFYA 532
Query: 478 ISPSLPVDCLLTRCLVGKKKIIYFTSPMVKNIIQSNENNLKIINTGVKSFAR-CDNKVMG 536
+ PS P LLTR GKK+ +Y S ++N++ N +K+INTG+K R D + G
Sbjct: 533 LDPSFPKKNLLTRTQEGKKRQLYMVSKELRNVLLHNSEKMKVINTGIKVLCRNNDGEQYG 592
Query: 537 CAFRFCQEGLSSMKAFIGEKRKVRVNREELITILNNSTPEQPTDLELLRPETRQTLTREG 596
CA+R QEG+ S+ FI R + V+ E++ +L P L ET++
Sbjct: 593 CAYRLAQEGIYSLYPFIN-ARILTVSVEDIKVLLTQENP----FLSKFSKETQKQAN--N 645
Query: 597 FGVGSCLLELQDD--------LPLSLVGWRGKSSVRAYI 627
+GS +L+ + D P+ L GWRGK+S+R+++
Sbjct: 646 LDMGSIVLKYEPDPQQPETLQCPIVLCGWRGKTSIRSFV 684
>sp|Q28E61|NSUN2_XENTR tRNA (cytosine(34)-C(5))-methyltransferase OS=Xenopus tropicalis
GN=nsun2 PE=2 SV=1
Length = 798
Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust.
Identities = 207/403 (51%), Positives = 277/403 (68%), Gaps = 10/403 (2%)
Query: 20 EKEQKKANPKTDTRHENYAEIVRENKDFEQYYKAQKICPENEWDSMLETLKKDLPTAFRI 79
E+EQ++ + Y EI++ENK FE YY+ KI P+ EWD + +L++ LP RI
Sbjct: 23 EEEQRRKAREQAAWECGYPEIIKENKLFEHYYQELKIVPDGEWDKFMASLREPLPATIRI 82
Query: 80 TNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRT 139
T AK +L ++ K+FKEL D E ++ AP L WYPE++ W LSR+ IR
Sbjct: 83 TGYK-SHAKEILHCLKEKYFKEL-QDIEVDGQKIEAPQPLSWYPEELAWHTNLSRKIIRK 140
Query: 140 SQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMI 199
S K HQFL+ E +G+ISRQEAVSMIPP+LL VQ HHK+LDMCAAPGSKTAQIIEM+
Sbjct: 141 SPELEKFHQFLVNETESGNISRQEAVSMIPPVLLKVQPHHKILDMCAAPGSKTAQIIEML 200
Query: 200 HAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259
HA + P P G V+ANDVDN RCY+LVHQAKRLNSPC ++ NHDAS +P +L + +G++
Sbjct: 201 HADMNVPFPEGFVIANDVDNKRCYLLVHQAKRLNSPCIMVVNHDASSIPRLL-VENNGSR 259
Query: 260 VPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319
+ +DR+LCDVPC+GDGT+RKN D+W KWT N LHG+Q RI RGVE LA GG++
Sbjct: 260 EVLYYDRILCDVPCSGDGTLRKNIDVWKKWTTLNSLQLHGLQIRIATRGVEQLAEGGRMV 319
Query: 320 YSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALKYAPGLSQWRPASKDNLDGYGS 379
YSTCSLNP+EDEAVI L+ +++G+++L DV++ P LK+ PG++QW+ +K+ Y
Sbjct: 320 YSTCSLNPVEDEAVIASLLDKSEGSLELADVASEIPGLKWMPGITQWKVMTKEG-HWYEK 378
Query: 380 FDEVPDKWKTQVRPQMFPTGD----PSHHLERCSVFGLLPHQQ 418
++++P TQ+RP MFP D S +L RC +LPH Q
Sbjct: 379 WEDIPTSRHTQIRPTMFPPKDEEKLKSMNLNRC--MRILPHHQ 419
Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 86/241 (35%), Positives = 132/241 (54%), Gaps = 24/241 (9%)
Query: 420 PRADNGEAESKPEPEASSPTRE------PPSKKRKRQPQGYKEDPFVFFNTDEAVWPPIR 473
P D E+KP S ++ PPSKK K G+KEDPFVF + D+ ++ PI+
Sbjct: 478 PAVDTENGETKPCTNQSDSSKTDIVCCPPPSKKMKLF--GFKEDPFVFVSEDDPIFDPIQ 535
Query: 474 DFYEISPSLPVDCLLTRCLVGKKKIIYFTSPMVKNIIQSNENNLKIINTGVKSFAR-CDN 532
FY + PS P LLTR GKK+ +Y S ++N++ N +K+INTG+K R D
Sbjct: 536 TFYALDPSFPKKNLLTRTQEGKKRQLYMVSKELRNVLLHNSEKMKVINTGIKVLCRNNDG 595
Query: 533 KVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILNNSTPEQPTDLELLRPETRQTL 592
+ GCA+R QEG+ ++ FI R V V+ E++ +L P L ET++
Sbjct: 596 EQYGCAYRLAQEGIYTLYPFIN-ARIVTVSIEDIKVLLTQENP----FLSKFSKETQKQA 650
Query: 593 TREGFGVGSCLLELQDD--------LPLSLVGWRGKSSVRAYISGSDLVHYLRLLGADVS 644
F +GS +L+ + D P+ L GWRGK+S+R+++ ++ +HYLR++G +V
Sbjct: 651 N--NFDMGSIVLKYEPDPQEPETLQCPIVLCGWRGKTSIRSFVPKNERLHYLRMMGVEVF 708
Query: 645 K 645
K
Sbjct: 709 K 709
>sp|P38205|NCL1_YEAST Multisite-specific tRNA:(cytosine-C(5))-methyltransferase
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=NCL1 PE=1 SV=1
Length = 684
Score = 381 bits (979), Expect = e-105, Method: Compositional matrix adjust.
Identities = 237/667 (35%), Positives = 357/667 (53%), Gaps = 62/667 (9%)
Query: 19 REKEQKKANPKT-----DTR-HENYAEIVRENKDFEQYYKAQKICPENEWDSMLETLKKD 72
R K KK N KT D+R +N++E+V+EN+ +E+YYK + PE++W+ +T +
Sbjct: 3 RRKNFKKGNKKTFGARDDSRAQKNWSELVKENEKWEKYYKTLALFPEDQWEEFKKTCQAP 62
Query: 73 LPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQL 132
LP FRIT S + A +L++ + + L N + E+ K AP+ LPWYP+ + WQL +
Sbjct: 63 LPLTFRITG-SRKHAGEVLNLFKERHLPNLTNVEFEGEKIK-APVELPWYPDHLAWQLDV 120
Query: 133 SRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKT 192
+ IR ++ F+K +FL++ENA G+ISRQEAVSMIPP++L+V+ HH VLDMCAAPGSKT
Sbjct: 121 PKTVIRKNEQFAKTQRFLVVENAVGNISRQEAVSMIPPIVLEVKPHHTVLDMCAAPGSKT 180
Query: 193 AQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV-L 251
AQ+IE +H D++ PSG VVAND D R +MLVHQ KRLNS ++ NHDA P + L
Sbjct: 181 AQLIEALH-KDTDE-PSGFVVANDADARRSHMLVHQLKRLNSANLMVVNHDAQFFPRIRL 238
Query: 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEM 311
+ +++ +KFDR+LCDVPC+GDGTMRKN ++W W G LH +Q I+ RG+ +
Sbjct: 239 HGNSNNKNDVLKFDRILCDVPCSGDGTMRKNVNVWKDWNTQAGLGLHAVQLNILNRGLHL 298
Query: 312 LAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALKYAPGLSQWRPASK 371
L G++ YSTCSLNP+E+EAV+ + + ++LV+ P L + G+S+W P
Sbjct: 299 LKNNGRLVYSTCSLNPIENEAVVAEALRKWGDKIRLVNCDDKLPGLIRSKGVSKW-PVYD 357
Query: 372 DNLDGYGSFDEVPDKWKTQVRPQMFPTGDPSHHLERCSVFGLLPHQQGPRA--------- 422
NL DE + P+ + + + + PHQQ
Sbjct: 358 RNLTEKTKGDE------GTLDSFFSPSEEEASKFNLQNCMRVYPHQQNTGGFFITVFEKV 411
Query: 423 -DNGEAESK------PEPEASSP----TREPPSKKRKRQPQGYKEDPFVFFNTDEAVWPP 471
D+ EA ++ P E+ P + +K++R P+ E+PFVF +
Sbjct: 412 EDSTEAATEKLSSETPALESEGPQTKKIKVEEVQKKERLPRDANEEPFVFVDPQHEALKV 471
Query: 472 IRDFYEISPSLPVDCLLTRCLVGK-KKIIYFTSPMVKNIIQSNENNLKIINTGVKSFA-- 528
DFY I + L R G+ +++Y P +K++IQ+N++ LKII +GVK F
Sbjct: 472 CWDFYGIDNIFDRNTCLVRNATGEPTRVVYTVCPALKDVIQANDDRLKIIYSGVKLFVSQ 531
Query: 529 RCDNKVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILNNSTP------EQPTDLE 582
R D + C++R E L MK + R V N E L +L S P + D +
Sbjct: 532 RSD---IECSWRIQSESLPIMKHHMKSNRIVEANLEMLKHLLIESFPNFDDIRSKNIDND 588
Query: 583 LLRPETRQTLTREGFGVGSCLLELQDDLP----LSLVGWRGKSSVRAYISGSDLVHYL-R 637
+ T+ G +++ + P L L W+G + + D L R
Sbjct: 589 FVEKMTK-------LSSGCAFIDVSRNDPAKENLFLPVWKGNKCINLMVCKEDTHELLYR 641
Query: 638 LLGADVS 644
+ G D +
Sbjct: 642 IFGIDAN 648
>sp|Q9HGQ2|TRM4A_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4a
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4a PE=1 SV=3
Length = 688
Score = 372 bits (954), Expect = e-102, Method: Compositional matrix adjust.
Identities = 226/647 (34%), Positives = 339/647 (52%), Gaps = 72/647 (11%)
Query: 19 REKEQKKANPKTDTRHENYAEIVRENKDFEQYYKAQKICPENEWDSMLETLKKDLPTAFR 78
R+ K N N+ I R+N++FE+YY+ QK+ E+++ + + L + LPT FR
Sbjct: 3 RKHYSSKKNRSKKGEFVNWDLIERKNENFEKYYRLQKLVTEDDFILLKQKLTEQLPTTFR 62
Query: 79 ITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIR 138
IT P + +E + L+ + T + + P+ LPWYP+ M + L +S+ IR
Sbjct: 63 ITASIPHATQVRDYFIEHYY--PLIENARTEDAKIPLPVSLPWYPDGMAFMLDISKEVIR 120
Query: 139 TSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEM 198
S L +FL++E G I+RQE+VSM+PPLLL+V++HHKVLDMCAAPGSKTAQ++E
Sbjct: 121 KSPHLKALQEFLVLETEAGDINRQESVSMVPPLLLNVESHHKVLDMCAAPGSKTAQLLEA 180
Query: 199 IHAAD-----SNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253
+H + +PSG+V+AND DN R +MLVHQ KRLNSP +I NHDAS +PN +
Sbjct: 181 LHKPTKKEDITTLLPSGIVIANDSDNKRAHMLVHQIKRLNSPNVLIVNHDASFLPNFHLS 240
Query: 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLA 313
DG K +KFDR+L DVPC+GDGT RKN +W +W+ LH Q +I+ RG+++L
Sbjct: 241 SPDGKKF-LKFDRILADVPCSGDGTFRKNIALWNEWSLKTALGLHATQIKILMRGLQLLE 299
Query: 314 VGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALKYAPGLSQWRPASKDN 373
GG++ YSTCSLNP+E+EAV+ ++ T+G+V+LVDVS+ P LK + G+ W D
Sbjct: 300 KGGRLVYSTCSLNPIENEAVVSAVLNATRGSVRLVDVSSELPQLKRSQGVDNWVVCDSD- 358
Query: 374 LDGYGSFDEVPDKWKTQVRPQMFPTGDPSHHLERCSV---FGLLPHQQGPRADNGEAESK 430
L+ Y SFD +P + ++ P ++P P L ++ + PH Q K
Sbjct: 359 LNIYPSFDTLPKELYEKMPPTLWPL--PKKELAELNIQNCLRIYPHFQNTGGFFVAVLEK 416
Query: 431 PEPEASSPT----------------REPPSKKRKR--------------QPQG------- 453
E SS E SKKRK+ +P+G
Sbjct: 417 YENLTSSMKTAVDDNKVFLREQKLPSEQASKKRKQDTQETSSDSKLAEVKPKGKNGGNRF 476
Query: 454 YKEDPFVFFNTDEAVWPPIRDFYEISPS-LPVDCLLTRCLVG-KKKIIYFTSPMVKNIIQ 511
++ DPFV+ D+ I + I + + + R + G K IY ++ + +N+I+
Sbjct: 477 HELDPFVYIKEDDQALEKIYKKFGIDEAIIKKNQFFVRNVNGVPTKAIYISNDLFRNVIE 536
Query: 512 SNENNLKIINTGVKSFARCD---------NKVMGCAFRFCQEGLSSMKAFIGEKRKVRVN 562
+N N +K ++ G+K F R D K C FR +G + FI E
Sbjct: 537 NNRNRVKFVHGGLKIFVRQDFGSLSREIAEKNGTCVFRVQSDGANLASHFIAESCLFHTT 596
Query: 563 REELITILNN---STPEQPTDLELLRPETRQTLTREGFGVGSCLLEL 606
+L +L++ + + P D L R E +GS LL +
Sbjct: 597 LSDLFILLDHEAVTIDDFPED-SLFRKEYNH------LDLGSTLLHV 636
>sp|O13935|TRM4B_SCHPO Multisite-specific tRNA:(cytosine-C(5))-methyltransferase trm4b
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=trm4b PE=3 SV=2
Length = 685
Score = 370 bits (951), Expect = e-101, Method: Compositional matrix adjust.
Identities = 241/647 (37%), Positives = 342/647 (52%), Gaps = 93/647 (14%)
Query: 10 RNKSFAQKRREKEQKKANPKTDTRHENYAEIVRENKDFEQYYKAQKIC---PENEWDSML 66
RNK Q +R K +EIV ENK FE YYK Q + P +E+DS +
Sbjct: 4 RNKKVTQGKRAYNDK-------------SEIVLENKQFEGYYKKQNLFRGKPNDEFDSFM 50
Query: 67 ETLKKDLPTAFRITNCSPEEAKALLSIVESKFF----KELVNDQETSEEEKVAPICLPWY 122
E ++K LPT FRI C L K++ K +V++ +T P LPWY
Sbjct: 51 EYMRKPLPTTFRI--CGYRHHAFELKNHFEKYYVPSLKNVVHEGQTIP----PPTVLPWY 104
Query: 123 PEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVL 182
P+ + + + + IR S +L +FL+ EN G+I+RQEAVSM+PPL LDV+ HH +L
Sbjct: 105 PDGLAYIVDAQKDVIRKSPPLKRLQRFLVSENEAGNINRQEAVSMLPPLFLDVEPHHVIL 164
Query: 183 DMCAAPGSKTAQIIEMIH--------AADSNPVPS--GLVVANDVDNNRCYMLVHQAKRL 232
DMCAAPGSKTAQ+IE ++ A DS + S GLV+AND D R MLVHQ RL
Sbjct: 165 DMCAAPGSKTAQLIEAVYKKANIKDAAHDSKNLKSVEGLVIANDADPKRAQMLVHQINRL 224
Query: 233 NSPCAIITNHDASVMPNVLY---TDADG-----NKVPMKFDRVLCDVPCTGDGTMRKNPD 284
NSP ++ NHDAS MPN+ + +DG K +KFDR+L DVPC+GDGT RKN
Sbjct: 225 NSPNILVVNHDASTMPNIYVKGSSPSDGLNVIEEKKILKFDRILADVPCSGDGTFRKNLS 284
Query: 285 IWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGA 344
+W +W+ ++ +LH +Q RI+ RG+++L VGG + YSTCS+NP+E+EAV+ + T GA
Sbjct: 285 LWREWSANSAFSLHPLQLRILIRGLQLLKVGGCLVYSTCSINPIENEAVVTAALKATGGA 344
Query: 345 VQLVDVSAITPALKYAPGLSQWRPASKDNLDGYGSFDEVPDKWKTQVRPQMFPTGDPSH- 403
V LVDVS P LK PGL W+ D+L+ + S E + K ++ M+P +
Sbjct: 345 VSLVDVSKKLPLLKRDPGLLSWK-VLDDSLNEFQSPAENTND-KIELTESMWPLPEEEMS 402
Query: 404 --HLERCSVFGLLPHQQGP---------RADNGEAES-KPEPEASSPTREPPSKKRKRQP 451
H+ERC+ L PH Q + D + S P+ +S PP KR+R
Sbjct: 403 KLHIERCA--RLYPHMQNTGGFFVAVLQKTDPINSRSFDPKKYTASMEILPPENKRQRTE 460
Query: 452 QG----------------YKEDPFVFFNTDEAVWPPIRDFYEISPSLPVDCLLTRCLVG- 494
+G + E+PFV+ N D+ I DFY I PS P D R G
Sbjct: 461 KGVDEASNSTLTKSGNSYFDEEPFVYINPDDTSIKTIVDFYGIDPSFPRDQFFVRNQSGI 520
Query: 495 KKKIIYFTSPMVKNIIQSNENNLKIINTGVKSFARCD------------NKVMGCAFRFC 542
+ IYF + K II++N N +K ++ GV+ F + + NK + C FR
Sbjct: 521 PVRSIYFACSLFKEIIEANTNRVKFVHGGVRFFVKQEISQLLKDFSLKANKDI-CNFRIH 579
Query: 543 QEGLSSMKAFIGEKRKVRVNREELITILNNSTP--EQPTDLELLRPE 587
G++ + F+ EK ++L ++ N P EQ ++ +L+ E
Sbjct: 580 SNGVNIISPFLNEKHFYDAGLKDLKILVKNEYPHVEQFSESGMLKKE 626
>sp|A7MKH5|RSMF_CROS8 Ribosomal RNA small subunit methyltransferase F OS=Cronobacter
sakazakii (strain ATCC BAA-894) GN=rsmF PE=3 SV=2
Length = 480
Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 65/210 (30%), Positives = 104/210 (49%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D T +V+D+ AAPGSKT QI ++ G
Sbjct: 92 EHLSGQFYIQEASSMLPVAALFADGNTPARVMDVAAAPGSKTTQIAALMQN-------QG 144
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G +P +FD +L D
Sbjct: 145 FILANEYSASRVKVLHANISRCGIHNVGLTHFDGRVF---------GAALPEQFDAILLD 195
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ LA GG + YSTC+LN E+
Sbjct: 196 APCSGEGVVRKDPDALRNWSPQSDQEIAATQRELIDSAFHALAPGGTLVYSTCTLNREEN 255
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
+ ++ L+ AV+++ + A+ P A
Sbjct: 256 QETVRWLLARYPQAVEVLSLEALFPGADAA 285
>sp|Q9V106|TRCM_PYRAB tRNA (cytosine(49)-C(5))-methyltransferase OS=Pyrococcus abyssi
(strain GE5 / Orsay) GN=PYRAB06230 PE=1 SV=1
Length = 311
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 100/200 (50%), Gaps = 17/200 (8%)
Query: 151 IMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
++E + G I QEA SMIPP++LD + +LDM AAPGSKT Q+ + + G
Sbjct: 84 LIEYSLGLIIPQEASSMIPPVVLDPKPSEVILDMAAAPGSKTTQMAQYMEN-------EG 136
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AND +R +L+ R A +T D + T FDRVL D
Sbjct: 137 CIIANDAKRDRANILIANLTRAGVLIAKVTVKDGAYFARYENT----------FDRVLLD 186
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+ G +RKN W+ +Q R++ + L GG + YSTC+++PLE+
Sbjct: 187 APCSSVGMIRKNFKFARTWSIGKVYYHSRLQKRLILAAYKSLKPGGVLVYSTCTVDPLEN 246
Query: 331 EAVIQRLIVETQGAVQLVDV 350
E V+ L+ +T ++ V +
Sbjct: 247 EEVVDFLLQKTDAKLEKVKL 266
>sp|A8FWM8|RSMF_SHESH Ribosomal RNA small subunit methyltransferase F OS=Shewanella
sediminis (strain HAW-EB3) GN=rsmF PE=3 SV=1
Length = 478
Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 106/208 (50%), Gaps = 20/208 (9%)
Query: 152 MENATGHISRQEAVSMIPPL-LLDVQT---HHKVLDMCAAPGSKTAQIIEMIHAADSNPV 207
+E+ G QEA SM+PP+ L +T H +LDM +APGSKT QI M+
Sbjct: 84 VEHLQGLFYIQEASSMLPPIALFSTKTDKAEHTILDMASAPGSKTTQIAAMMDN------ 137
Query: 208 PSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRV 267
SGL++AN+ ++R +L R+ +T+ DA V LY +FD +
Sbjct: 138 -SGLLIANEYSSSRVKVLHANVLRMGVSNTALTHFDARVFGEYLYD---------QFDAI 187
Query: 268 LCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNP 327
L D PC+G+GT+RK+P W + + + Q +++ L GG + YSTC+L+
Sbjct: 188 LLDAPCSGEGTIRKDPLALNNWGLAENSAIAETQKALLESAFLALKTGGSLVYSTCALSK 247
Query: 328 LEDEAVIQRLIVETQGAVQLVDVSAITP 355
LE++ V + L AV+ ++ + P
Sbjct: 248 LENQDVCEHLRSTFPEAVEFESLATLFP 275
>sp|A8GDM6|RSMF_SERP5 Ribosomal RNA small subunit methyltransferase F OS=Serratia
proteamaculans (strain 568) GN=rsmF PE=3 SV=2
Length = 478
Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 77/264 (29%), Positives = 121/264 (45%), Gaps = 35/264 (13%)
Query: 99 FKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGH 158
F LV D + ++ PI PW E G+ ++ +R A E+ +G
Sbjct: 54 FLTLVQDYDW----RLEPI--PWCAE--GFWIERGDEELRLGSA---------AEHLSGL 96
Query: 159 ISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAND 216
QEA SM+P L + +VLD+ AAPGSKT QI +++ G +VAN+
Sbjct: 97 FYIQEASSMLPVSALFAGAEAPSRVLDVAAAPGSKTTQIAALMNN-------QGGIVANE 149
Query: 217 VDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGD 276
+R +L R +T+ D V G +P FD +L D PC+G+
Sbjct: 150 YSASRVKVLHANISRCGVKNVALTHFDGRVF---------GAALPESFDAILLDAPCSGE 200
Query: 277 GTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQR 336
G +RK+PD + W+P + + Q ++ LA GG + YSTC+LN E++ ++
Sbjct: 201 GVVRKDPDAMSNWSPESVTAIADTQRELIDSAFHALAPGGVMVYSTCTLNAQENQQIVNG 260
Query: 337 LIVETQGAVQLVDVSAITPALKYA 360
L+ AV + + + P K A
Sbjct: 261 LLATYGDAVSIEPLGDLFPGAKQA 284
>sp|B8CPH7|RSMF_SHEPW Ribosomal RNA small subunit methyltransferase F OS=Shewanella
piezotolerans (strain WP3 / JCM 13877) GN=rsmF PE=3 SV=2
Length = 474
Score = 110 bits (274), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/209 (32%), Positives = 106/209 (50%), Gaps = 20/209 (9%)
Query: 152 MENATGHISRQEAVSMIPPL-LLDVQTH---HKVLDMCAAPGSKTAQIIEMIHAADSNPV 207
+E+ G QEA SM+PP LL V+ H VLDM +APGSKT QI ++
Sbjct: 84 IEHLQGLFYIQEASSMLPPTALLSVEQHDAQQYVLDMASAPGSKTTQIAALMGN------ 137
Query: 208 PSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRV 267
GL+VAN+ +R +L R+ +T+ DA V ++ FD V
Sbjct: 138 -KGLLVANEYSASRVKVLHANIARMGVANCALTHFDARVFGEYMFE---------IFDSV 187
Query: 268 LCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNP 327
L D PC+G+GT+RK+PD W ++ + Q ++ + L GG++ YSTC+L+
Sbjct: 188 LLDAPCSGEGTIRKDPDALKNWDNNDVKGIVDTQKALIDSAFQSLKAGGELVYSTCALSR 247
Query: 328 LEDEAVIQRLIVETQGAVQLVDVSAITPA 356
E++ V L AV+ +++S++ P
Sbjct: 248 QENQNVCDYLKQRYPDAVEFINLSSLFPG 276
>sp|Q3IHA0|RSMF_PSEHT Ribosomal RNA small subunit methyltransferase F
OS=Pseudoalteromonas haloplanktis (strain TAC 125)
GN=rsmF PE=3 SV=2
Length = 482
Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 100/187 (53%), Gaps = 18/187 (9%)
Query: 156 TGHISRQEAVSMIPPLLLDVQTHHK--VLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVV 213
+G + QEA SM+PP+ L H VLDM +APGSKT+Q+ +++ G++V
Sbjct: 95 SGAMYVQEASSMLPPIALKQSIEHTNYVLDMASAPGSKTSQLAALMNN-------QGVLV 147
Query: 214 ANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPC 273
AN++ ++R +L KR+ +++ D + N ++ FD +L D PC
Sbjct: 148 ANELSSSRLKVLSATLKRMGVGNCALSHFDGVIFGNYMFE---------CFDSILLDAPC 198
Query: 274 TGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAV 333
+G+GT+RK+ D W+ + + +Q ++K L GG + YSTC+L PLE++ V
Sbjct: 199 SGEGTVRKDADALKNWSIDSNIEIAQVQKDLIKSAFYALKPGGTLVYSTCTLTPLENQHV 258
Query: 334 IQRLIVE 340
L+ E
Sbjct: 259 CDFLLSE 265
>sp|A3QDA2|RSMF_SHELP Ribosomal RNA small subunit methyltransferase F OS=Shewanella
loihica (strain ATCC BAA-1088 / PV-4) GN=rsmF PE=3 SV=1
Length = 486
Score = 109 bits (272), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 68/214 (31%), Positives = 105/214 (49%), Gaps = 21/214 (9%)
Query: 152 MENATGHISRQEAVSMIPPLLL-----DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNP 206
+E+ G QEA SM+PP L + T +LDM +APGSKT Q+ M++
Sbjct: 84 VEHIQGLFYIQEASSMLPPKALFPEPIEDATSLTLLDMASAPGSKTTQLAAMMNN----- 138
Query: 207 VPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDR 266
GL+VAN+ ++R +L +R+ + +T+ DA V L+ FD
Sbjct: 139 --QGLLVANEYSSSRVKVLHANVQRMGASNLALTHFDARVFGKYLFE---------SFDA 187
Query: 267 VLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLN 326
+L D PC G+GT+RK+PD W S + +Q +++ L GG + YSTC+LN
Sbjct: 188 ILLDAPCGGEGTVRKDPDALKHWDESEIEAIASVQRDLIESAFLALKPGGSLVYSTCTLN 247
Query: 327 PLEDEAVIQRLIVETQGAVQLVDVSAITPALKYA 360
E++ V L AVQ ++ + P + A
Sbjct: 248 RRENQDVCLHLKATYGDAVQFESLAGLFPGAEKA 281
>sp|Q1RAV2|RSMF_ECOUT Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain UTI89 / UPEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 100/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--KG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L +GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYHDAVEFLPLGDLFPGANKA 284
>sp|A1AC00|RSMF_ECOK1 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O1:K1 / APEC GN=rsmF PE=3 SV=2
Length = 479
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 100/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--KG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L +GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYHDAVEFLPLGDLFPGANKA 284
>sp|B7MBP2|RSMF_ECO45 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O45:K1 (strain S88 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 100/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--KG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L +GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYHDAVEFLPLGDLFPGANKA 284
>sp|Q32F19|RSMF_SHIDS Ribosomal RNA small subunit methyltransferase F OS=Shigella
dysenteriae serotype 1 (strain Sd197) GN=rsmF PE=3 SV=2
Length = 479
Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI ++ G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDIAAAPGSKTTQIAARMNN-------EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 TILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L +GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRLGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGTNKA 284
>sp|B1J0Q3|RSMF_ECOLC Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain ATCC 8739 / DSM 1576 / Crooks) GN=rsmF PE=3 SV=2
Length = 479
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 100/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GVAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + PA A
Sbjct: 255 EAVCMWLKETYPDAVEFLPLGELFPAANKA 284
>sp|A8A133|RSMF_ECOHS Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O9:H4 (strain HS) GN=rsmF PE=3 SV=2
Length = 479
Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 100/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GVAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + PA A
Sbjct: 255 EAVCMWLKETYPDAVEFLPLGELFPAANKA 284
>sp|Q8FGS9|RSMF_ECOL6 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=rsmF PE=3
SV=2
Length = 479
Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYHDAVEFLPLGDLFPGANKA 284
>sp|Q321Y0|RSMF_SHIBS Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 4 (strain Sb227) GN=rsmF PE=3 SV=2
Length = 479
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|B2U477|RSMF_SHIB3 Ribosomal RNA small subunit methyltransferase F OS=Shigella boydii
serotype 18 (strain CDC 3083-94 / BS512) GN=rsmF PE=3
SV=2
Length = 479
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|B6IBR3|RSMF_ECOSE Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SE11) GN=rsmF PE=3 SV=2
Length = 479
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|B7M2B1|RSMF_ECO8A Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O8 (strain IAI1) GN=rsmF PE=3 SV=1
Length = 479
Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|B7USL2|RSMF_ECO27 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O127:H6 (strain E2348/69 / EPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|B7NBI3|RSMF_ECOLU Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O17:K52:H18 (strain UMN026 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 100/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G +P FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGIRNVALTHFDGRVF---------GAALPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALCPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV + L AV+ + + + P A
Sbjct: 255 EAVCRWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|B7MVW5|RSMF_ECO81 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O81 (strain ED1a) GN=rsmF PE=3 SV=1
Length = 479
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|B7L7N7|RSMF_ECO55 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain 55989 / EAEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|A7ZMV8|RSMF_ECO24 Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O139:H28 (strain E24377A / ETEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 106 bits (264), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|P76273|RSMF_ECOLI Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12) GN=rsmF PE=1 SV=2
Length = 479
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI ++ G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNN-------EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|B1XHA3|RSMF_ECODH Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / DH10B) GN=rsmF PE=3 SV=1
Length = 479
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI ++ G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNN-------EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|C4ZZJ2|RSMF_ECOBW Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain K12 / MC4100 / BW2952) GN=rsmF PE=3 SV=1
Length = 479
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI ++ G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNN-------EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|B1LD37|RSMF_ECOSM Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
(strain SMS-3-5 / SECEC) GN=rsmF PE=3 SV=2
Length = 479
Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 69/210 (32%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|Q3Z2H4|RSMF_SHISS Ribosomal RNA small subunit methyltransferase F OS=Shigella sonnei
(strain Ss046) GN=rsmF PE=3 SV=2
Length = 479
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 66/210 (31%), Positives = 98/210 (46%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI ++ G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNN-------EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G VP FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAAVPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|A6TB06|RSMF_KLEP7 Ribosomal RNA small subunit methyltransferase F OS=Klebsiella
pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH
78578) GN=rsmF PE=3 SV=2
Length = 477
Score = 105 bits (263), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 63/206 (30%), Positives = 102/206 (49%), Gaps = 18/206 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D + +V+D+ AAPGSKT QI + A G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADNRQPERVMDVAAAPGSKTTQIAARMGNA-------G 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G +P FD +L D
Sbjct: 144 GILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAALPETFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+ D W+P + ++ Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDADALKNWSPESNLDIAATQRELIDSAFHALRPGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPA 356
++VI+ L+ AV+++ + + P
Sbjct: 255 QSVIEWLLSRYPQAVEILPLGELFPG 280
>sp|B1KQN1|RSMF_SHEWM Ribosomal RNA small subunit methyltransferase F OS=Shewanella
woodyi (strain ATCC 51908 / MS32) GN=rsmF PE=3 SV=1
Length = 478
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 64/208 (30%), Positives = 105/208 (50%), Gaps = 20/208 (9%)
Query: 152 MENATGHISRQEAVSMIPPLLL----DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPV 207
+E+ G QEA SM+PP L D + + +LDM +APGSKT Q+ ++
Sbjct: 84 IEHIQGLFYIQEASSMLPPTALFDGLDNSSEYTILDMASAPGSKTTQMASLMDN------ 137
Query: 208 PSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRV 267
GL+VAN+ ++R +L +R+ +T+ DA V LY +FD +
Sbjct: 138 -KGLLVANEYSSSRVKVLHANVQRMGVYNTALTHFDARVFGEYLYH---------QFDAI 187
Query: 268 LCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNP 327
L D PC+G+GT+RK+P W+ ++ Q +++ L GG + YSTC+L+
Sbjct: 188 LLDAPCSGEGTIRKDPLALRNWSLEENASIIETQKALIESAFLALKTGGSLVYSTCALSR 247
Query: 328 LEDEAVIQRLIVETQGAVQLVDVSAITP 355
E++ V + L+ AV+ +S + P
Sbjct: 248 SENQEVCEHLMSCFPQAVEFQSLSELFP 275
>sp|A9MV57|RSMF_SALPB Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rsmF PE=3
SV=2
Length = 479
Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 153 ENATGHISRQEAVSMIPPLLLDVQTHH--KVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L +H +V+DM AAPGSKT QI + G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGN-------RG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G +P FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGIANTALTHFDGRVF---------GAALPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + ++ Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITP 355
EAV L AV+ + + + P
Sbjct: 255 EAVCLWLKETYADAVEFLPLGDLFP 279
>sp|A1RIZ0|RSMF_SHESW Ribosomal RNA small subunit methyltransferase F OS=Shewanella sp.
(strain W3-18-1) GN=rsmF PE=3 SV=2
Length = 486
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 100/207 (48%), Gaps = 23/207 (11%)
Query: 152 MENATGHISRQEAVSMIPPLLLDVQTHHK-------VLDMCAAPGSKTAQIIEMIHAADS 204
+E+ G QEA SM+PP L + VLD+ +APGSKT QI ++H
Sbjct: 84 LEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVLDLASAPGSKTTQIAALMHN--- 140
Query: 205 NPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKF 264
SGL++AN+ +R +L R+ + +T+ D V LY F
Sbjct: 141 ----SGLLIANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYE---------SF 187
Query: 265 DRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324
D VL D PC G+GT+RK+ D W+ ++ + Q +++ L GG + YSTC+
Sbjct: 188 DAVLIDAPCGGEGTVRKDADALKHWSLNDVLAISETQKALIESAFLALKPGGSLVYSTCT 247
Query: 325 LNPLEDEAVIQRLIVETQGAVQLVDVS 351
LN LE++ V + L AVQ +S
Sbjct: 248 LNRLENQGVCEYLKQTYGDAVQFESLS 274
>sp|A4Y7J8|RSMF_SHEPC Ribosomal RNA small subunit methyltransferase F OS=Shewanella
putrefaciens (strain CN-32 / ATCC BAA-453) GN=rsmF PE=3
SV=2
Length = 486
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/207 (32%), Positives = 100/207 (48%), Gaps = 23/207 (11%)
Query: 152 MENATGHISRQEAVSMIPPLLLDVQTHHK-------VLDMCAAPGSKTAQIIEMIHAADS 204
+E+ G QEA SM+PP L + VLD+ +APGSKT QI ++H
Sbjct: 84 LEHIQGLFYIQEASSMLPPTALFTPSAFTPSAKWQCVLDLASAPGSKTTQIAALMHN--- 140
Query: 205 NPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKF 264
SGL++AN+ +R +L R+ + +T+ D V LY F
Sbjct: 141 ----SGLLIANEYSASRVKVLHANVLRMGASHCALTHFDGRVFGEYLYE---------SF 187
Query: 265 DRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324
D VL D PC G+GT+RK+ D W+ ++ + Q +++ L GG + YSTC+
Sbjct: 188 DAVLIDAPCGGEGTVRKDADALKHWSLNDVLAISETQKALIESAFLALKPGGSLVYSTCT 247
Query: 325 LNPLEDEAVIQRLIVETQGAVQLVDVS 351
LN LE++ V + L AVQ +S
Sbjct: 248 LNRLENQGVCEYLKQTYGDAVQFESLS 274
>sp|B4TY18|RSMF_SALSV Ribosomal RNA small subunit methyltransferase F OS=Salmonella
schwarzengrund (strain CVM19633) GN=rsmF PE=3 SV=2
Length = 479
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 153 ENATGHISRQEAVSMIPPLLLDVQTHH--KVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L +H +V+DM AAPGSKT QI + G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGN-------RG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G +P FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGIANTALTHFDGRVF---------GAALPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + ++ Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITP 355
EAV L AV+ + + + P
Sbjct: 255 EAVCLWLKETYADAVEFLPLGDLFP 279
>sp|Q8Z662|RSMF_SALTI Ribosomal RNA small subunit methyltransferase F OS=Salmonella typhi
GN=rsmF PE=3 SV=1
Length = 479
Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 153 ENATGHISRQEAVSMIPPLLLDVQTHH--KVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L +H +V+DM AAPGSKT QI + G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGN-------RG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G +P FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGIANTALTHFDGRVF---------GAALPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + ++ Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITP 355
EAV L AV+ + + + P
Sbjct: 255 EAVCLWLKETYADAVEFLPLGDLFP 279
>sp|B7NS84|RSMF_ECO7I Ribosomal RNA small subunit methyltransferase F OS=Escherichia coli
O7:K1 (strain IAI39 / ExPEC) GN=rsmF PE=3 SV=1
Length = 479
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 99/210 (47%), Gaps = 18/210 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G +P FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGISNVALTHFDGRVF---------GAALPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPALKYA 360
EAV L AV+ + + + P A
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPGANKA 284
>sp|Q8ZNZ2|RSMF_SALTY Ribosomal RNA small subunit methyltransferase F OS=Salmonella
typhimurium (strain LT2 / SGSC1412 / ATCC 700720)
GN=rsmF PE=3 SV=1
Length = 479
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 153 ENATGHISRQEAVSMIPPLLLDVQTHH--KVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L +H +V+DM AAPGSKT QI + G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGN-------RG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G +P FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGIANTALTHFDGRVF---------GAALPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + ++ Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITP 355
EAV L AV+ + + + P
Sbjct: 255 EAVCLWLKETYADAVEFLPLGDLFP 279
>sp|B7LPL0|RSMF_ESCF3 Ribosomal RNA small subunit methyltransferase F OS=Escherichia
fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73)
GN=rsmF PE=3 SV=1
Length = 479
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 99/206 (48%), Gaps = 18/206 (8%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L D + +V+D+ AAPGSKT QI AA N G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADGNSPQRVMDVAAAPGSKTTQI-----AARMNN--EG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G +P FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGIRNVALTHFDGRVF---------GAALPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + + Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNREEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITPA 356
EAV L AV+ + + + P
Sbjct: 255 EAVCLWLKETYPDAVEFLPLGDLFPG 280
>sp|B6ELC0|RSMF_ALISL Ribosomal RNA small subunit methyltransferase F OS=Aliivibrio
salmonicida (strain LFI1238) GN=rsmF PE=3 SV=1
Length = 473
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 95/197 (48%), Gaps = 18/197 (9%)
Query: 153 ENATGHISRQEAVSMIP--PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ G QEA SM+P LL D LDM +APGSKT Q+ A N G
Sbjct: 90 EHMAGLFYIQEASSMMPVTALLKDNDNIEMALDMASAPGSKTTQLA----AGMKN---KG 142
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
+VAN+ ++R +L +R +T+ D V G +P FD +L D
Sbjct: 143 ALVANEYSSSRVKILCSNVQRCGVSNVALTHFDGRVF---------GGWLPETFDSILLD 193
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+GT+RK+PD W+P + + Q ++K L GG + YSTC+LN E+
Sbjct: 194 APCSGEGTIRKDPDAMHNWSPESVIEIGDTQRDLIKSAFHALKPGGVMVYSTCTLNHEEN 253
Query: 331 EAVIQRLIVETQGAVQL 347
+ + L+ E AV
Sbjct: 254 QNICHHLVTEFGDAVTF 270
>sp|B4SV89|RSMF_SALNS Ribosomal RNA small subunit methyltransferase F OS=Salmonella
newport (strain SL254) GN=rsmF PE=3 SV=2
Length = 479
Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 153 ENATGHISRQEAVSMIPPLLLDVQTHH--KVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L +H +V+DM AAPGSKT QI + G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGN-------RG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G +P FD +L D
Sbjct: 144 AILANEFSASRVKVLHANISRCGIANTALTHFDGRVF---------GAALPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + ++ Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITP 355
EAV L AV+ + + + P
Sbjct: 255 EAVCLWLKETYADAVEFLPLGDLFP 279
>sp|C0Q2Y5|RSMF_SALPC Ribosomal RNA small subunit methyltransferase F OS=Salmonella
paratyphi C (strain RKS4594) GN=rsmF PE=3 SV=1
Length = 479
Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 65/205 (31%), Positives = 98/205 (47%), Gaps = 18/205 (8%)
Query: 153 ENATGHISRQEAVSMIPPLLLDVQTHH--KVLDMCAAPGSKTAQIIEMIHAADSNPVPSG 210
E+ +G QEA SM+P L +H +V+DM AAPGSKT QI + G
Sbjct: 91 EHLSGLFYIQEASSMLPVAALFADDNHPQRVMDMAAAPGSKTTQIAARMGN-------RG 143
Query: 211 LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270
++AN+ +R +L R +T+ D V G +P FD +L D
Sbjct: 144 TILANEFSASRVKVLHANISRCGIANTALTHFDGRVF---------GAALPEMFDAILLD 194
Query: 271 VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330
PC+G+G +RK+PD W+P + ++ Q ++ L GG + YSTC+LN E+
Sbjct: 195 APCSGEGVVRKDPDALKNWSPESNLDIAATQRELLDSAFHALRPGGTLVYSTCTLNRQEN 254
Query: 331 EAVIQRLIVETQGAVQLVDVSAITP 355
EAV L AV+ + + + P
Sbjct: 255 EAVCLWLKETYADAVEFLPLGDLFP 279
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.134 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 253,280,528
Number of Sequences: 539616
Number of extensions: 11348248
Number of successful extensions: 34349
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 33718
Number of HSP's gapped (non-prelim): 245
length of query: 646
length of database: 191,569,459
effective HSP length: 124
effective length of query: 522
effective length of database: 124,657,075
effective search space: 65070993150
effective search space used: 65070993150
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)