Query psy17365
Match_columns 646
No_of_seqs 510 out of 2930
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 20:31:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17365.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17365hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2198|consensus 100.0 2E-71 4.4E-76 580.3 20.7 349 32-388 11-361 (375)
2 PRK11933 yebU rRNA (cytosine-C 100.0 2.2E-63 4.8E-68 548.8 34.5 444 45-620 6-454 (470)
3 COG0144 Sun tRNA and rRNA cyto 100.0 8.1E-58 1.8E-62 491.2 26.6 291 48-427 59-350 (355)
4 PF01189 Nol1_Nop2_Fmu: NOL1/N 100.0 1.5E-55 3.1E-60 460.6 16.1 277 65-427 1-281 (283)
5 KOG1122|consensus 100.0 2.6E-52 5.6E-57 440.0 23.8 290 55-427 147-437 (460)
6 PRK14903 16S rRNA methyltransf 100.0 1.5E-48 3.3E-53 429.6 25.9 249 57-351 146-394 (431)
7 PRK14901 16S rRNA methyltransf 100.0 2E-47 4.4E-52 421.7 25.6 246 56-343 160-405 (434)
8 TIGR00446 nop2p NOL1/NOP2/sun 100.0 1E-47 2.2E-52 398.0 21.9 220 77-343 1-220 (264)
9 TIGR00563 rsmB ribosomal RNA s 100.0 9.4E-46 2E-50 407.6 26.4 237 60-343 151-389 (426)
10 PRK14902 16S rRNA methyltransf 100.0 1.3E-43 2.9E-48 392.5 27.1 247 57-351 161-407 (444)
11 PRK10901 16S rRNA methyltransf 100.0 4.6E-43 1E-47 386.3 27.2 242 60-349 157-398 (427)
12 PRK14904 16S rRNA methyltransf 100.0 5.7E-43 1.2E-47 387.4 25.9 242 57-350 163-404 (445)
13 KOG2360|consensus 100.0 1.5E-31 3.3E-36 280.4 15.5 290 59-425 116-407 (413)
14 PRK15128 23S rRNA m(5)C1962 me 99.7 2.7E-16 5.8E-21 172.0 15.4 196 119-363 183-382 (396)
15 COG1092 Predicted SAM-dependen 99.6 6.4E-15 1.4E-19 159.7 14.0 178 155-363 198-379 (393)
16 COG2242 CobL Precorrin-6B meth 99.6 5.8E-14 1.3E-18 136.9 14.0 136 167-350 24-159 (187)
17 PF10672 Methyltrans_SAM: S-ad 99.5 4.3E-14 9.2E-19 147.9 6.9 177 118-349 85-263 (286)
18 PRK11783 rlmL 23S rRNA m(2)G24 99.5 4.3E-13 9.3E-18 156.9 14.8 168 155-358 519-688 (702)
19 PRK00377 cbiT cobalt-precorrin 99.5 6.8E-13 1.5E-17 131.9 13.7 151 156-351 20-171 (198)
20 TIGR00537 hemK_rel_arch HemK-r 99.4 4.2E-12 9.2E-17 124.0 14.9 155 167-348 9-163 (179)
21 PF13659 Methyltransf_26: Meth 99.4 1.8E-12 3.8E-17 116.9 8.7 116 178-324 1-117 (117)
22 TIGR03704 PrmC_rel_meth putati 99.4 8.8E-12 1.9E-16 128.8 15.0 144 177-343 86-233 (251)
23 TIGR01177 conserved hypothetic 99.4 6.5E-12 1.4E-16 134.6 14.5 131 163-326 162-298 (329)
24 PRK14967 putative methyltransf 99.4 1.3E-11 2.9E-16 124.9 15.2 146 174-347 33-181 (223)
25 PF12847 Methyltransf_18: Meth 99.3 1.1E-11 2.5E-16 110.6 12.3 111 177-323 1-112 (112)
26 PTZ00146 fibrillarin; Provisio 99.3 2.2E-11 4.8E-16 127.4 14.9 108 173-321 128-236 (293)
27 PF05175 MTS: Methyltransferas 99.3 9.8E-12 2.1E-16 120.8 10.5 123 163-321 17-139 (170)
28 PRK09328 N5-glutamine S-adenos 99.3 1.8E-10 3.9E-15 119.5 20.5 145 174-342 105-254 (275)
29 PRK04266 fibrillarin; Provisio 99.3 3.4E-11 7.3E-16 122.6 14.7 136 173-351 68-209 (226)
30 TIGR03533 L3_gln_methyl protei 99.3 6.3E-11 1.4E-15 124.6 17.1 142 176-342 120-266 (284)
31 PRK07402 precorrin-6B methylas 99.3 2.7E-11 5.8E-16 120.1 13.1 148 157-350 20-168 (196)
32 TIGR03534 RF_mod_PrmC protein- 99.3 7E-11 1.5E-15 120.6 15.5 143 177-342 87-233 (251)
33 PF08704 GCD14: tRNA methyltra 99.3 1.3E-11 2.9E-16 126.8 9.7 142 154-342 19-163 (247)
34 COG2226 UbiE Methylase involve 99.2 3.7E-11 8.1E-16 122.6 11.5 124 173-339 47-170 (238)
35 TIGR00080 pimt protein-L-isoas 99.2 7.3E-11 1.6E-15 118.9 12.9 106 171-321 71-176 (215)
36 PRK08287 cobalt-precorrin-6Y C 99.2 1.6E-10 3.5E-15 113.7 14.1 131 164-342 18-148 (187)
37 PF01209 Ubie_methyltran: ubiE 99.2 3E-11 6.5E-16 123.5 8.6 129 171-341 41-169 (233)
38 COG2519 GCD14 tRNA(1-methylade 99.2 8.2E-11 1.8E-15 119.7 11.5 135 156-341 75-211 (256)
39 PRK11805 N5-glutamine S-adenos 99.2 1.2E-10 2.6E-15 123.8 13.1 139 179-342 135-278 (307)
40 TIGR00536 hemK_fam HemK family 99.2 4.5E-10 9.9E-15 118.0 17.1 138 178-339 115-257 (284)
41 TIGR02469 CbiT precorrin-6Y C5 99.2 2.9E-10 6.2E-15 102.8 13.4 109 172-322 14-122 (124)
42 COG4123 Predicted O-methyltran 99.2 9.7E-11 2.1E-15 119.8 10.8 154 165-342 32-186 (248)
43 TIGR00138 gidB 16S rRNA methyl 99.2 3E-10 6.6E-15 111.8 13.9 126 177-351 42-168 (181)
44 PRK14968 putative methyltransf 99.1 9.3E-10 2E-14 107.1 15.4 147 171-342 17-165 (188)
45 PRK14966 unknown domain/N5-glu 99.1 5.8E-10 1.2E-14 122.0 15.3 145 175-342 249-397 (423)
46 PRK00121 trmB tRNA (guanine-N( 99.1 3.5E-10 7.7E-15 113.0 12.1 117 177-323 40-157 (202)
47 TIGR00438 rrmJ cell division p 99.1 8.6E-10 1.9E-14 108.7 14.5 117 174-321 29-145 (188)
48 PRK03522 rumB 23S rRNA methylu 99.1 2.4E-10 5.2E-15 121.9 10.8 108 174-326 170-277 (315)
49 PRK13942 protein-L-isoaspartat 99.1 4.1E-10 8.9E-15 113.4 12.0 105 171-320 70-174 (212)
50 PF13847 Methyltransf_31: Meth 99.1 7.7E-10 1.7E-14 105.1 12.2 111 176-324 2-112 (152)
51 TIGR02752 MenG_heptapren 2-hep 99.1 9E-10 1.9E-14 111.5 13.4 112 172-322 40-151 (231)
52 PF01135 PCMT: Protein-L-isoas 99.1 3E-10 6.5E-15 114.3 9.5 105 171-320 66-170 (209)
53 PRK13944 protein-L-isoaspartat 99.1 1.3E-09 2.8E-14 109.2 13.0 106 171-321 66-172 (205)
54 COG2890 HemK Methylase of poly 99.1 2.1E-09 4.5E-14 112.9 14.7 146 180-351 113-262 (280)
55 PRK13168 rumA 23S rRNA m(5)U19 99.1 7.8E-10 1.7E-14 123.2 11.8 88 173-276 293-380 (443)
56 PRK11188 rrmJ 23S rRNA methylt 99.1 1.9E-09 4.1E-14 108.5 13.4 130 175-340 49-180 (209)
57 PRK00107 gidB 16S rRNA methylt 99.1 1.6E-09 3.4E-14 107.4 12.5 119 177-344 45-163 (187)
58 TIGR00091 tRNA (guanine-N(7)-) 99.0 2.5E-09 5.5E-14 106.1 13.1 117 177-322 16-132 (194)
59 TIGR00479 rumA 23S rRNA (uraci 99.0 2E-09 4.3E-14 119.5 13.7 111 172-324 287-397 (431)
60 PRK11873 arsM arsenite S-adeno 99.0 3.6E-09 7.7E-14 110.1 14.8 114 171-323 71-184 (272)
61 COG2518 Pcm Protein-L-isoaspar 99.0 1.5E-09 3.3E-14 108.2 11.4 104 170-321 65-168 (209)
62 PLN02233 ubiquinone biosynthes 99.0 5.9E-09 1.3E-13 108.4 14.8 114 172-324 68-184 (261)
63 PRK01544 bifunctional N5-gluta 99.0 5.4E-09 1.2E-13 118.3 15.7 142 177-342 138-285 (506)
64 PRK09489 rsmC 16S ribosomal RN 99.0 6.1E-09 1.3E-13 112.3 15.0 134 163-336 182-315 (342)
65 PRK00312 pcm protein-L-isoaspa 99.0 3.9E-09 8.5E-14 105.9 12.4 105 171-323 72-176 (212)
66 COG2263 Predicted RNA methylas 99.0 1E-08 2.2E-13 100.3 13.8 124 174-347 42-165 (198)
67 PF02475 Met_10: Met-10+ like- 98.9 1.8E-09 4E-14 107.8 8.4 101 175-320 99-200 (200)
68 KOG1540|consensus 98.9 7.7E-09 1.7E-13 105.0 12.5 135 171-342 94-231 (296)
69 COG2265 TrmA SAM-dependent met 98.9 3.9E-09 8.5E-14 116.8 10.2 110 171-323 287-396 (432)
70 COG2520 Predicted methyltransf 98.9 9.7E-09 2.1E-13 109.8 12.7 151 155-350 157-320 (341)
71 PRK15001 SAM-dependent 23S rib 98.9 9.4E-09 2E-13 112.0 12.7 135 155-325 204-343 (378)
72 TIGR02085 meth_trns_rumB 23S r 98.9 5.4E-09 1.2E-13 114.1 10.8 83 174-275 230-312 (374)
73 PRK10909 rsmD 16S rRNA m(2)G96 98.9 5.8E-09 1.3E-13 104.3 9.8 80 176-273 52-131 (199)
74 PRK04338 N(2),N(2)-dimethylgua 98.9 3.9E-09 8.5E-14 115.4 9.3 101 177-321 57-157 (382)
75 COG1041 Predicted DNA modifica 98.9 6.4E-09 1.4E-13 110.6 10.5 121 170-323 190-311 (347)
76 PRK13943 protein-L-isoaspartat 98.9 1.3E-08 2.7E-13 108.9 12.8 105 172-321 75-179 (322)
77 PRK14121 tRNA (guanine-N(7)-)- 98.9 1.2E-08 2.5E-13 111.2 12.1 119 175-325 120-238 (390)
78 PLN02476 O-methyltransferase 98.8 1.3E-08 2.8E-13 106.4 10.8 148 139-323 81-229 (278)
79 TIGR00308 TRM1 tRNA(guanine-26 98.8 5.4E-09 1.2E-13 113.9 8.3 104 178-324 45-148 (374)
80 PF03602 Cons_hypoth95: Conser 98.8 3.3E-09 7.3E-14 104.7 6.0 109 177-322 42-153 (183)
81 PF05958 tRNA_U5-meth_tr: tRNA 98.8 6.9E-09 1.5E-13 112.4 8.9 95 172-277 192-292 (352)
82 PRK00517 prmA ribosomal protei 98.8 4.7E-08 1E-12 100.9 14.4 119 175-350 117-236 (250)
83 PLN02244 tocopherol O-methyltr 98.8 3.2E-08 7E-13 106.7 13.7 108 176-324 117-225 (340)
84 KOG2915|consensus 98.8 3.5E-08 7.6E-13 101.0 12.7 142 154-342 84-227 (314)
85 COG2264 PrmA Ribosomal protein 98.8 4E-08 8.7E-13 103.3 13.4 136 166-351 149-287 (300)
86 PLN02396 hexaprenyldihydroxybe 98.8 4.5E-08 9.7E-13 104.8 14.1 107 174-322 128-235 (322)
87 PRK08317 hypothetical protein; 98.8 6.7E-08 1.5E-12 97.0 14.6 129 172-340 14-146 (241)
88 PRK11036 putative S-adenosyl-L 98.8 3.3E-08 7.1E-13 102.2 12.6 108 176-324 43-151 (255)
89 PLN02781 Probable caffeoyl-CoA 98.8 2.1E-08 4.5E-13 102.7 10.3 116 172-323 63-179 (234)
90 COG0293 FtsJ 23S rRNA methylas 98.8 3E-08 6.5E-13 98.8 10.6 133 175-341 43-175 (205)
91 TIGR00406 prmA ribosomal prote 98.8 7.5E-08 1.6E-12 101.5 14.2 124 175-350 157-281 (288)
92 COG2813 RsmC 16S RNA G1207 met 98.8 6.3E-08 1.4E-12 101.4 12.8 153 154-349 133-287 (300)
93 PLN02672 methionine S-methyltr 98.8 4.8E-08 1.1E-12 117.7 13.6 144 178-342 119-295 (1082)
94 KOG2904|consensus 98.8 7.9E-08 1.7E-12 98.5 12.7 147 177-339 148-300 (328)
95 PRK05031 tRNA (uracil-5-)-meth 98.8 2.5E-08 5.5E-13 108.4 9.7 88 179-276 208-301 (362)
96 PRK15451 tRNA cmo(5)U34 methyl 98.8 1E-07 2.2E-12 98.2 13.7 110 175-322 54-164 (247)
97 PF01728 FtsJ: FtsJ-like methy 98.7 9.5E-09 2.1E-13 100.5 5.5 141 174-349 20-163 (181)
98 PF06325 PrmA: Ribosomal prote 98.7 5.4E-08 1.2E-12 102.8 11.3 124 175-351 159-282 (295)
99 PHA03412 putative methyltransf 98.7 5.4E-08 1.2E-12 99.2 10.8 112 177-319 49-160 (241)
100 PRK11207 tellurite resistance 98.7 1E-07 2.2E-12 95.0 12.6 108 173-321 26-133 (197)
101 PRK01683 trans-aconitate 2-met 98.7 1.2E-07 2.6E-12 97.7 13.5 105 172-322 26-130 (258)
102 TIGR00095 RNA methyltransferas 98.7 5.5E-08 1.2E-12 96.5 10.4 83 177-274 49-132 (189)
103 COG0742 N6-adenine-specific me 98.7 2.5E-08 5.5E-13 98.0 7.8 82 177-274 43-125 (187)
104 PRK15068 tRNA mo(5)U34 methylt 98.7 2.1E-07 4.5E-12 99.8 15.4 109 173-323 118-227 (322)
105 TIGR00452 methyltransferase, p 98.7 2E-07 4.3E-12 99.4 14.2 115 173-329 117-232 (314)
106 PF02353 CMAS: Mycolic acid cy 98.7 8.4E-08 1.8E-12 100.5 11.2 116 168-325 53-169 (273)
107 TIGR02143 trmA_only tRNA (urac 98.7 6.7E-08 1.5E-12 104.8 10.2 89 179-277 199-293 (353)
108 PRK14103 trans-aconitate 2-met 98.7 1.1E-07 2.3E-12 98.3 10.9 101 173-321 25-125 (255)
109 cd02440 AdoMet_MTases S-adenos 98.7 1.9E-07 4.2E-12 79.2 10.7 103 180-321 1-103 (107)
110 PF01170 UPF0020: Putative RNA 98.7 1.2E-07 2.7E-12 93.1 10.6 127 171-323 22-150 (179)
111 PRK10258 biotin biosynthesis p 98.7 8E-08 1.7E-12 98.7 9.6 115 162-323 27-141 (251)
112 COG2227 UbiG 2-polyprenyl-3-me 98.7 5E-08 1.1E-12 98.9 7.8 105 176-323 58-162 (243)
113 PF08241 Methyltransf_11: Meth 98.7 6.2E-08 1.3E-12 82.9 7.4 95 182-320 1-95 (95)
114 PTZ00098 phosphoethanolamine N 98.7 1.2E-07 2.6E-12 98.8 10.6 110 172-323 47-157 (263)
115 PLN02336 phosphoethanolamine N 98.6 3.1E-07 6.8E-12 103.2 14.5 127 173-341 262-388 (475)
116 PRK00216 ubiE ubiquinone/menaq 98.6 5.8E-07 1.3E-11 90.6 15.1 114 173-325 47-161 (239)
117 TIGR00477 tehB tellurite resis 98.6 2.8E-07 6.1E-12 91.6 12.3 107 173-321 26-132 (195)
118 PRK04457 spermidine synthase; 98.6 3E-07 6.6E-12 95.8 12.9 115 176-325 65-180 (262)
119 PF13649 Methyltransf_25: Meth 98.6 7.8E-08 1.7E-12 84.9 7.1 101 181-316 1-101 (101)
120 PHA03411 putative methyltransf 98.6 3.5E-07 7.7E-12 95.2 12.9 142 174-342 61-206 (279)
121 PF01269 Fibrillarin: Fibrilla 98.6 6.9E-07 1.5E-11 89.9 13.5 138 173-351 69-211 (229)
122 PF02384 N6_Mtase: N-6 DNA Met 98.6 9.2E-08 2E-12 101.5 7.6 176 156-341 25-205 (311)
123 PLN03075 nicotianamine synthas 98.6 4.8E-07 1E-11 95.3 12.2 109 177-322 123-233 (296)
124 TIGR00740 methyltransferase, p 98.6 7.4E-07 1.6E-11 91.1 13.3 109 176-322 52-161 (239)
125 PF01596 Methyltransf_3: O-met 98.5 4.8E-08 1E-12 98.1 3.7 114 175-324 43-157 (205)
126 COG2230 Cfa Cyclopropane fatty 98.5 3.4E-07 7.5E-12 95.6 10.0 115 168-324 63-178 (283)
127 PF09445 Methyltransf_15: RNA 98.5 2.7E-07 5.9E-12 89.2 8.4 82 180-278 2-84 (163)
128 PLN02490 MPBQ/MSBQ methyltrans 98.5 1E-06 2.2E-11 95.0 13.6 103 176-321 112-214 (340)
129 PRK11705 cyclopropane fatty ac 98.5 4.7E-07 1E-11 99.3 11.2 111 170-325 160-270 (383)
130 COG4122 Predicted O-methyltran 98.5 4.1E-07 8.9E-12 92.0 9.6 116 171-326 53-170 (219)
131 PRK05134 bifunctional 3-demeth 98.5 1.3E-06 2.7E-11 88.7 13.1 109 175-325 46-154 (233)
132 PRK00811 spermidine synthase; 98.5 1.2E-06 2.5E-11 92.4 12.8 128 177-341 76-208 (283)
133 PRK01581 speE spermidine synth 98.5 1.3E-06 2.8E-11 94.3 13.1 135 171-342 145-289 (374)
134 PRK12335 tellurite resistance 98.5 1.3E-06 2.7E-11 92.2 12.4 103 177-321 120-222 (287)
135 TIGR01934 MenG_MenH_UbiE ubiqu 98.5 2.2E-06 4.7E-11 85.5 13.6 109 175-324 37-145 (223)
136 smart00650 rADc Ribosomal RNA 98.5 9.2E-07 2E-11 85.7 10.5 80 172-273 8-87 (169)
137 smart00828 PKS_MT Methyltransf 98.4 3.6E-06 7.8E-11 84.8 14.6 103 180-323 2-105 (224)
138 PRK06922 hypothetical protein; 98.4 1.3E-06 2.8E-11 100.2 12.3 128 172-325 413-540 (677)
139 TIGR00417 speE spermidine synt 98.4 2.5E-06 5.4E-11 89.2 12.5 128 174-339 70-201 (270)
140 PRK03612 spermidine synthase; 98.4 1.6E-06 3.5E-11 98.8 11.7 114 176-324 296-417 (521)
141 TIGR02072 BioC biotin biosynth 98.4 1.4E-06 3.1E-11 87.6 9.9 102 177-322 34-135 (240)
142 KOG1596|consensus 98.4 1E-06 2.2E-11 88.8 8.5 127 174-341 153-283 (317)
143 COG2521 Predicted archaeal met 98.4 3E-07 6.6E-12 92.4 4.6 139 173-349 130-274 (287)
144 TIGR02716 C20_methyl_CrtF C-20 98.4 3.6E-06 7.9E-11 89.3 12.9 120 170-330 142-262 (306)
145 PF02390 Methyltransf_4: Putat 98.3 3E-06 6.5E-11 84.6 11.0 135 180-349 20-157 (195)
146 KOG4589|consensus 98.3 4.3E-06 9.4E-11 81.6 11.3 137 175-348 67-207 (232)
147 TIGR01983 UbiG ubiquinone bios 98.3 3.4E-06 7.3E-11 84.8 11.1 107 177-324 45-151 (224)
148 PF05401 NodS: Nodulation prot 98.3 3.6E-06 7.7E-11 83.4 8.9 140 173-355 39-185 (201)
149 PLN02589 caffeoyl-CoA O-methyl 98.2 2.9E-06 6.2E-11 87.7 8.5 111 176-321 78-189 (247)
150 PRK00050 16S rRNA m(4)C1402 me 98.2 1.7E-06 3.7E-11 91.5 6.9 90 172-276 14-103 (296)
151 TIGR03438 probable methyltrans 98.2 9.1E-06 2E-10 86.3 12.2 127 176-337 62-189 (301)
152 PRK14896 ksgA 16S ribosomal RN 98.2 1.1E-06 2.3E-11 91.4 4.9 80 172-275 24-103 (258)
153 COG0220 Predicted S-adenosylme 98.2 5.1E-06 1.1E-10 84.8 9.5 127 179-340 50-176 (227)
154 PF08242 Methyltransf_12: Meth 98.2 4.4E-07 9.5E-12 79.6 1.2 99 182-318 1-99 (99)
155 PLN02336 phosphoethanolamine N 98.2 1.1E-05 2.4E-10 90.8 12.6 113 172-324 32-144 (475)
156 PRK11088 rrmA 23S rRNA methylt 98.2 8.8E-06 1.9E-10 85.0 10.7 98 176-322 84-181 (272)
157 TIGR02021 BchM-ChlM magnesium 98.2 1.8E-05 4E-10 79.7 12.6 104 175-321 53-157 (219)
158 COG1889 NOP1 Fibrillarin-like 98.2 2E-05 4.3E-10 78.1 12.1 141 173-355 72-217 (231)
159 PTZ00338 dimethyladenosine tra 98.2 4.3E-06 9.2E-11 88.6 8.0 84 171-276 30-114 (294)
160 smart00138 MeTrc Methyltransfe 98.2 1.7E-05 3.7E-10 82.8 12.3 113 176-321 98-241 (264)
161 PRK11727 23S rRNA mA1618 methy 98.1 2.7E-05 5.9E-10 83.4 13.6 147 176-342 113-284 (321)
162 PF03848 TehB: Tellurite resis 98.1 1.5E-05 3.2E-10 79.3 10.5 103 177-322 30-133 (192)
163 PF13489 Methyltransf_23: Meth 98.1 4.7E-06 1E-10 78.5 6.5 99 175-325 20-118 (161)
164 TIGR03840 TMPT_Se_Te thiopurin 98.1 1.8E-05 3.9E-10 80.1 11.0 111 176-325 33-155 (213)
165 COG4076 Predicted RNA methylas 98.1 4.9E-06 1.1E-10 81.3 5.9 99 179-319 34-132 (252)
166 KOG1270|consensus 98.1 1.1E-05 2.5E-10 82.7 8.6 103 175-322 87-195 (282)
167 KOG1663|consensus 98.1 2.5E-05 5.5E-10 78.8 10.5 148 138-321 33-182 (237)
168 COG4106 Tam Trans-aconitate me 98.1 1.4E-05 3.1E-10 79.9 8.5 101 175-321 28-128 (257)
169 KOG1661|consensus 98.0 8E-05 1.7E-09 74.3 13.4 101 175-320 80-191 (237)
170 KOG2187|consensus 98.0 9.4E-06 2E-10 89.9 7.5 116 171-327 377-494 (534)
171 KOG1271|consensus 98.0 2.1E-05 4.5E-10 76.7 8.8 118 180-332 70-191 (227)
172 TIGR02987 met_A_Alw26 type II 98.0 4.8E-05 1E-09 86.8 13.2 169 177-350 31-225 (524)
173 PLN02366 spermidine synthase 98.0 6.5E-05 1.4E-09 80.2 13.2 110 177-320 91-204 (308)
174 PRK10742 putative methyltransf 98.0 1.6E-05 3.5E-10 81.7 7.4 89 167-274 76-175 (250)
175 KOG2671|consensus 98.0 1.3E-05 2.8E-10 84.8 6.7 139 166-326 197-355 (421)
176 KOG1099|consensus 97.9 4.7E-05 1E-09 76.6 9.7 138 179-347 43-185 (294)
177 PRK00274 ksgA 16S ribosomal RN 97.9 1.5E-05 3.2E-10 83.5 6.4 81 172-275 37-117 (272)
178 COG0275 Predicted S-adenosylme 97.9 0.00016 3.5E-09 75.9 13.0 91 171-274 17-107 (314)
179 PRK01544 bifunctional N5-gluta 97.9 0.00012 2.7E-09 83.2 13.4 137 176-349 346-485 (506)
180 KOG1098|consensus 97.9 2.1E-05 4.5E-10 88.3 6.2 128 175-340 42-173 (780)
181 PRK07580 Mg-protoporphyrin IX 97.9 0.00016 3.5E-09 72.9 12.3 72 176-270 62-134 (230)
182 PRK13255 thiopurine S-methyltr 97.8 0.00016 3.5E-09 73.4 12.0 112 175-325 35-158 (218)
183 TIGR03587 Pse_Me-ase pseudamin 97.8 0.0001 2.3E-09 74.0 10.1 73 174-270 40-112 (204)
184 PRK05785 hypothetical protein; 97.8 0.00012 2.6E-09 74.7 10.6 91 177-316 51-141 (226)
185 PRK06202 hypothetical protein; 97.8 0.0001 2.2E-09 75.0 9.9 108 174-320 57-164 (232)
186 PLN02823 spermine synthase 97.8 0.00012 2.6E-09 79.0 10.6 118 170-322 97-220 (336)
187 KOG3420|consensus 97.7 2.2E-05 4.8E-10 73.9 3.3 101 177-321 48-148 (185)
188 PLN02585 magnesium protoporphy 97.7 0.00026 5.6E-09 75.8 11.2 70 177-269 144-218 (315)
189 PF02527 GidB: rRNA small subu 97.7 0.00014 3E-09 72.1 8.4 110 166-321 38-147 (184)
190 TIGR00755 ksgA dimethyladenosi 97.7 0.00011 2.5E-09 75.9 8.2 77 172-272 24-103 (253)
191 COG0286 HsdM Type I restrictio 97.6 0.00069 1.5E-08 76.8 14.5 175 157-340 166-346 (489)
192 COG0030 KsgA Dimethyladenosine 97.6 0.00016 3.6E-09 74.9 8.6 87 170-277 23-109 (259)
193 PF02005 TRM: N2,N2-dimethylgu 97.6 8.5E-05 1.9E-09 81.3 6.7 104 178-324 50-155 (377)
194 PF08003 Methyltransf_9: Prote 97.6 0.0006 1.3E-08 72.0 12.1 109 176-326 114-223 (315)
195 PF12147 Methyltransf_20: Puta 97.6 0.0012 2.5E-08 69.3 13.8 131 178-342 136-267 (311)
196 KOG2899|consensus 97.6 0.00038 8.2E-09 70.9 9.7 47 177-231 58-104 (288)
197 PF03291 Pox_MCEL: mRNA cappin 97.6 0.00034 7.4E-09 75.4 10.1 115 177-322 62-186 (331)
198 PF01861 DUF43: Protein of unk 97.6 0.00037 7.9E-09 71.3 9.5 130 177-350 44-176 (243)
199 PF05185 PRMT5: PRMT5 arginine 97.6 0.00018 3.9E-09 80.5 8.0 126 178-338 187-315 (448)
200 PF01564 Spermine_synth: Sperm 97.5 0.00029 6.3E-09 72.9 7.5 134 170-341 70-208 (246)
201 COG0116 Predicted N6-adenine-s 97.4 0.0012 2.7E-08 71.7 12.3 128 171-322 185-344 (381)
202 PRK11783 rlmL 23S rRNA m(2)G24 97.4 0.0015 3.2E-08 77.3 13.9 124 176-322 189-347 (702)
203 TIGR00006 S-adenosyl-methyltra 97.4 0.00035 7.6E-09 74.3 7.6 91 172-276 15-105 (305)
204 PRK11760 putative 23S rRNA C24 97.4 0.0004 8.6E-09 74.5 7.7 74 175-275 209-282 (357)
205 KOG4300|consensus 97.4 0.00051 1.1E-08 68.5 7.8 118 179-340 78-197 (252)
206 PF07021 MetW: Methionine bios 97.4 0.00099 2.2E-08 66.1 9.9 71 175-269 11-81 (193)
207 COG0357 GidB Predicted S-adeno 97.4 0.00066 1.4E-08 68.7 8.5 97 178-319 68-165 (215)
208 COG3963 Phospholipid N-methylt 97.2 0.0012 2.6E-08 63.9 8.4 115 173-324 44-158 (194)
209 TIGR00478 tly hemolysin TlyA f 97.2 0.00065 1.4E-08 69.5 6.2 40 176-224 74-113 (228)
210 PF05219 DREV: DREV methyltran 97.2 0.0014 3.1E-08 67.7 8.6 94 177-321 94-187 (265)
211 COG1867 TRM1 N2,N2-dimethylgua 97.2 0.001 2.2E-08 71.7 7.6 120 178-342 53-173 (380)
212 COG0421 SpeE Spermidine syntha 97.2 0.0018 3.9E-08 68.3 9.4 120 169-324 69-192 (282)
213 KOG2730|consensus 97.2 0.00027 5.9E-09 71.0 3.1 89 177-281 94-183 (263)
214 TIGR02081 metW methionine bios 97.1 0.0019 4.1E-08 64.0 8.9 71 176-271 12-83 (194)
215 cd00315 Cyt_C5_DNA_methylase C 97.1 0.00097 2.1E-08 70.1 7.0 79 180-281 2-80 (275)
216 PF00891 Methyltransf_2: O-met 97.1 0.0037 8E-08 63.9 10.5 115 172-334 95-211 (241)
217 KOG3191|consensus 97.0 0.0098 2.1E-07 58.5 12.5 146 178-347 44-190 (209)
218 KOG1541|consensus 97.0 0.0031 6.8E-08 63.6 9.1 143 155-340 26-174 (270)
219 KOG0820|consensus 97.0 0.0025 5.5E-08 66.0 8.6 80 172-273 53-133 (315)
220 PRK13256 thiopurine S-methyltr 97.0 0.0032 6.9E-08 64.4 9.0 113 175-324 41-165 (226)
221 KOG1499|consensus 96.9 0.0037 8.1E-08 67.0 9.4 115 177-330 60-177 (346)
222 PF10294 Methyltransf_16: Puta 96.9 0.0036 7.7E-08 61.3 8.5 115 175-327 43-160 (173)
223 KOG1253|consensus 96.8 0.0011 2.3E-08 73.7 4.4 112 173-324 105-217 (525)
224 PF05724 TPMT: Thiopurine S-me 96.6 0.0041 8.9E-08 63.3 6.7 127 174-339 34-180 (218)
225 PF01795 Methyltransf_5: MraW 96.6 0.00078 1.7E-08 71.7 1.5 91 172-275 15-105 (310)
226 TIGR01444 fkbM_fam methyltrans 96.6 0.0065 1.4E-07 56.5 7.3 58 180-245 1-58 (143)
227 TIGR00497 hsdM type I restrict 96.6 0.011 2.4E-07 67.4 10.3 177 154-342 192-377 (501)
228 PF00398 RrnaAD: Ribosomal RNA 96.6 0.0047 1E-07 64.4 6.7 84 171-273 24-107 (262)
229 KOG1500|consensus 96.5 0.011 2.4E-07 62.9 8.8 122 177-340 177-302 (517)
230 PLN02232 ubiquinone biosynthes 96.5 0.014 3.1E-07 56.1 9.1 80 213-324 1-83 (160)
231 COG3897 Predicted methyltransf 96.4 0.003 6.6E-08 62.6 4.2 70 177-269 79-148 (218)
232 TIGR03439 methyl_EasF probable 96.3 0.035 7.6E-07 59.7 11.9 134 176-339 75-211 (319)
233 PF08123 DOT1: Histone methyla 96.3 0.013 2.8E-07 59.2 8.1 120 172-330 37-165 (205)
234 PF06080 DUF938: Protein of un 96.3 0.037 8.1E-07 55.6 11.0 142 178-349 26-172 (204)
235 COG4976 Predicted methyltransf 96.2 0.0089 1.9E-07 60.7 6.3 131 174-351 122-264 (287)
236 PF04816 DUF633: Family of unk 96.2 0.049 1.1E-06 55.0 11.6 120 181-349 1-121 (205)
237 COG1189 Predicted rRNA methyla 96.2 0.013 2.8E-07 60.0 7.0 74 177-272 79-153 (245)
238 PF00145 DNA_methylase: C-5 cy 96.1 0.031 6.7E-07 58.9 10.3 78 180-281 2-79 (335)
239 PF13578 Methyltransf_24: Meth 96.1 0.0012 2.7E-08 58.6 -0.6 103 182-321 1-104 (106)
240 KOG2361|consensus 95.9 0.017 3.7E-07 59.1 6.5 109 180-321 74-182 (264)
241 KOG1975|consensus 95.9 0.038 8.1E-07 58.8 9.0 137 166-341 108-250 (389)
242 KOG3010|consensus 95.6 0.042 9.2E-07 56.3 8.0 125 175-341 30-156 (261)
243 PRK00536 speE spermidine synth 95.5 0.14 3E-06 53.6 11.8 120 170-342 66-189 (262)
244 PF10354 DUF2431: Domain of un 95.5 0.19 4.1E-06 49.0 12.0 139 187-350 6-150 (166)
245 PRK04148 hypothetical protein; 95.5 0.089 1.9E-06 49.6 9.1 67 177-269 16-83 (134)
246 PRK10611 chemotaxis methyltran 95.3 0.16 3.6E-06 53.8 11.8 115 179-322 117-262 (287)
247 KOG2782|consensus 95.3 0.0079 1.7E-07 60.5 1.7 97 171-278 37-133 (303)
248 COG1064 AdhP Zn-dependent alco 95.2 0.084 1.8E-06 57.1 9.1 95 174-321 163-258 (339)
249 TIGR00675 dcm DNA-methyltransf 95.1 0.053 1.2E-06 58.1 7.3 77 181-281 1-77 (315)
250 PF06962 rRNA_methylase: Putat 95.1 0.16 3.4E-06 48.2 9.5 117 211-348 1-121 (140)
251 PF04445 SAM_MT: Putative SAM- 95.0 0.033 7.1E-07 57.2 5.1 86 168-272 64-160 (234)
252 KOG0024|consensus 94.9 0.11 2.3E-06 55.6 8.6 108 173-324 165-275 (354)
253 KOG1227|consensus 94.8 0.015 3.3E-07 61.1 1.9 74 177-270 194-269 (351)
254 COG1352 CheR Methylase of chem 94.6 0.25 5.4E-06 51.9 10.5 119 179-320 98-239 (268)
255 COG4262 Predicted spermidine s 94.3 0.24 5.2E-06 53.6 9.7 134 174-342 286-428 (508)
256 KOG3115|consensus 94.3 0.11 2.4E-06 52.0 6.8 114 179-322 62-183 (249)
257 PF05971 Methyltransf_10: Prot 94.2 0.19 4.2E-06 53.5 8.8 154 178-349 103-282 (299)
258 PF01739 CheR: CheR methyltran 94.1 0.19 4.2E-06 50.3 8.2 115 178-322 32-175 (196)
259 KOG2078|consensus 94.1 0.024 5.2E-07 62.2 1.7 64 175-248 247-312 (495)
260 PF01234 NNMT_PNMT_TEMT: NNMT/ 93.9 0.18 3.9E-06 52.6 7.8 141 177-351 56-238 (256)
261 COG0270 Dcm Site-specific DNA 93.9 0.16 3.4E-06 54.8 7.6 83 179-282 4-86 (328)
262 PF04989 CmcI: Cephalosporin h 93.8 0.1 2.2E-06 52.7 5.4 160 156-347 10-185 (206)
263 PF13679 Methyltransf_32: Meth 93.7 0.19 4.2E-06 47.3 6.8 55 175-233 23-77 (141)
264 PRK01747 mnmC bifunctional tRN 93.6 0.27 5.9E-06 58.0 9.4 129 177-342 57-219 (662)
265 COG0500 SmtA SAM-dependent met 93.4 1.1 2.5E-05 38.8 11.0 109 181-330 52-163 (257)
266 PF05891 Methyltransf_PK: AdoM 93.4 0.14 3E-06 52.0 5.7 105 177-320 55-159 (218)
267 PF05148 Methyltransf_8: Hypot 93.4 0.25 5.5E-06 49.9 7.4 114 174-349 69-182 (219)
268 PF03141 Methyltransf_29: Puta 93.4 0.12 2.5E-06 58.3 5.4 104 180-326 120-223 (506)
269 PRK10458 DNA cytosine methylas 92.4 0.39 8.4E-06 54.4 8.0 94 176-280 86-186 (467)
270 PHA01634 hypothetical protein 92.3 0.59 1.3E-05 43.7 7.6 76 177-276 28-103 (156)
271 COG4798 Predicted methyltransf 92.2 2.3 5E-05 42.7 12.1 40 171-217 42-81 (238)
272 PF03059 NAS: Nicotianamine sy 91.8 0.94 2E-05 47.8 9.5 106 179-321 122-229 (276)
273 COG1568 Predicted methyltransf 91.3 0.57 1.2E-05 49.2 7.1 153 153-350 127-286 (354)
274 PF10237 N6-adenineMlase: Prob 91.2 0.99 2.1E-05 44.0 8.3 123 165-338 12-135 (162)
275 COG2384 Predicted SAM-dependen 91.1 3.6 7.7E-05 42.0 12.3 124 176-348 15-139 (226)
276 COG1063 Tdh Threonine dehydrog 91.0 0.99 2.1E-05 49.1 9.2 102 175-321 166-268 (350)
277 COG2933 Predicted SAM-dependen 91.0 0.44 9.4E-06 49.6 5.8 70 175-271 209-278 (358)
278 PRK11524 putative methyltransf 90.6 0.45 9.7E-06 50.2 5.9 45 176-230 207-251 (284)
279 PRK11524 putative methyltransf 90.4 0.44 9.6E-06 50.3 5.6 76 235-325 7-82 (284)
280 PF00107 ADH_zinc_N: Zinc-bind 90.3 0.48 1E-05 43.0 5.0 88 188-322 2-89 (130)
281 TIGR03451 mycoS_dep_FDH mycoth 89.7 1.9 4.2E-05 46.4 10.0 104 173-321 172-275 (358)
282 PF01555 N6_N4_Mtase: DNA meth 89.3 0.55 1.2E-05 46.5 5.0 42 175-226 189-230 (231)
283 PRK09880 L-idonate 5-dehydroge 88.7 3.7 8E-05 44.0 11.2 101 174-322 166-266 (343)
284 KOG1709|consensus 88.4 2.8 6E-05 42.8 9.0 112 176-330 100-212 (271)
285 KOG3987|consensus 88.3 0.31 6.7E-06 49.1 2.4 39 177-225 112-150 (288)
286 cd08283 FDH_like_1 Glutathione 87.9 1.3 2.8E-05 48.5 7.1 48 172-227 179-227 (386)
287 PF09243 Rsm22: Mitochondrial 87.8 2.9 6.3E-05 44.0 9.4 45 180-231 36-80 (274)
288 cd08230 glucose_DH Glucose deh 87.4 2.9 6.2E-05 45.0 9.4 95 175-320 170-267 (355)
289 TIGR02822 adh_fam_2 zinc-bindi 87.2 4.2 9.2E-05 43.4 10.5 91 173-320 161-252 (329)
290 PF05430 Methyltransf_30: S-ad 87.0 0.48 1E-05 44.1 2.6 75 237-348 33-107 (124)
291 cd08281 liver_ADH_like1 Zinc-d 86.7 3.2 7E-05 45.0 9.4 103 173-321 187-289 (371)
292 PF11599 AviRa: RRNA methyltra 86.4 1.1 2.4E-05 45.5 5.0 49 178-232 52-100 (246)
293 PRK13699 putative methylase; P 86.1 1.5 3.2E-05 45.0 5.9 48 175-232 161-208 (227)
294 cd08237 ribitol-5-phosphate_DH 85.8 3.9 8.5E-05 43.9 9.4 96 174-322 160-256 (341)
295 PF13636 Nol1_Nop2_Fmu_2: pre- 85.7 1 2.2E-05 40.3 4.0 91 514-629 10-100 (102)
296 TIGR03201 dearomat_had 6-hydro 85.5 3.9 8.5E-05 43.9 9.2 50 173-235 162-212 (349)
297 KOG3178|consensus 84.6 2.9 6.3E-05 45.3 7.5 106 171-323 167-276 (342)
298 TIGR03366 HpnZ_proposed putati 84.2 5.6 0.00012 41.3 9.4 101 174-321 117-217 (280)
299 PRK10309 galactitol-1-phosphat 84.1 6.4 0.00014 42.1 10.0 104 173-321 156-259 (347)
300 cd08254 hydroxyacyl_CoA_DH 6-h 83.9 7.8 0.00017 40.7 10.4 100 174-321 162-262 (338)
301 PF03721 UDPG_MGDP_dh_N: UDP-g 80.8 9.8 0.00021 37.7 9.2 127 187-349 7-149 (185)
302 PRK13699 putative methylase; P 80.8 5.1 0.00011 41.0 7.4 86 238-342 3-88 (227)
303 PLN02740 Alcohol dehydrogenase 80.2 11 0.00023 41.2 10.1 53 173-236 194-246 (381)
304 TIGR02825 B4_12hDH leukotriene 80.2 7.3 0.00016 41.1 8.6 100 173-319 134-234 (325)
305 PRK09424 pntA NAD(P) transhydr 78.9 18 0.00039 41.7 11.6 117 173-324 160-287 (509)
306 cd08238 sorbose_phosphate_red 78.9 10 0.00022 41.8 9.6 50 173-228 171-222 (410)
307 PLN02827 Alcohol dehydrogenase 78.2 9.8 0.00021 41.6 9.1 102 173-320 189-293 (378)
308 TIGR02818 adh_III_F_hyde S-(hy 78.2 9.3 0.0002 41.5 8.8 53 173-236 181-233 (368)
309 KOG0023|consensus 77.6 9.5 0.00021 41.2 8.2 59 174-245 178-238 (360)
310 PF01555 N6_N4_Mtase: DNA meth 75.7 6.2 0.00013 38.9 6.1 80 264-349 1-80 (231)
311 KOG1269|consensus 74.3 5.3 0.00012 43.9 5.6 110 168-319 101-212 (364)
312 PF07669 Eco57I: Eco57I restri 74.1 11 0.00023 33.9 6.6 79 263-351 2-82 (106)
313 cd08239 THR_DH_like L-threonin 74.0 20 0.00042 38.0 9.8 102 173-320 159-260 (339)
314 cd08278 benzyl_alcohol_DH Benz 73.7 15 0.00033 39.7 9.0 103 173-321 182-284 (365)
315 PLN03154 putative allyl alcoho 73.0 16 0.00034 39.4 8.9 100 173-320 154-256 (348)
316 KOG3045|consensus 72.4 10 0.00022 39.8 6.7 103 178-342 181-283 (325)
317 PRK12939 short chain dehydroge 71.7 22 0.00047 35.5 9.0 62 178-247 7-68 (250)
318 KOG1197|consensus 71.6 13 0.00027 39.1 7.1 50 172-228 141-190 (336)
319 KOG1501|consensus 71.6 8 0.00017 43.2 6.0 59 180-247 69-128 (636)
320 PRK12429 3-hydroxybutyrate deh 71.2 21 0.00046 35.8 8.8 87 178-272 4-90 (258)
321 PF11899 DUF3419: Protein of u 71.1 6.8 0.00015 43.4 5.5 50 170-229 28-77 (380)
322 cd08293 PTGR2 Prostaglandin re 69.2 16 0.00035 38.6 7.9 100 174-320 149-252 (345)
323 PRK06181 short chain dehydroge 68.4 30 0.00064 35.1 9.3 60 180-247 3-62 (263)
324 cd08277 liver_alcohol_DH_like 68.1 37 0.00081 36.6 10.5 105 173-321 180-285 (365)
325 PRK05599 hypothetical protein; 67.9 24 0.00052 35.8 8.5 83 181-271 3-85 (246)
326 PF04672 Methyltransf_19: S-ad 67.7 19 0.00042 37.9 7.7 117 180-325 71-193 (267)
327 cd05278 FDH_like Formaldehyde 67.3 31 0.00068 36.4 9.5 47 173-226 163-209 (347)
328 PRK13394 3-hydroxybutyrate deh 66.9 31 0.00068 34.7 9.1 89 178-274 7-95 (262)
329 KOG4174|consensus 66.7 82 0.0018 33.1 11.7 133 174-327 53-195 (282)
330 cd05285 sorbitol_DH Sorbitol d 66.1 24 0.00052 37.5 8.4 104 172-320 157-263 (343)
331 cd08236 sugar_DH NAD(P)-depend 65.0 27 0.0006 36.9 8.6 103 172-320 154-256 (343)
332 PRK07576 short chain dehydroge 64.9 40 0.00087 34.5 9.5 87 177-271 8-94 (264)
333 PLN03209 translocon at the inn 64.7 68 0.0015 37.5 12.0 84 173-270 75-166 (576)
334 PRK07533 enoyl-(acyl carrier p 64.3 40 0.00087 34.4 9.3 134 177-321 9-147 (258)
335 PRK12937 short chain dehydroge 64.1 37 0.00079 33.8 8.8 136 178-324 5-141 (245)
336 PRK08324 short chain dehydroge 63.9 25 0.00054 41.8 8.7 134 177-322 421-557 (681)
337 PF03141 Methyltransf_29: Puta 63.8 21 0.00046 40.6 7.5 42 302-350 447-491 (506)
338 cd08300 alcohol_DH_class_III c 63.7 43 0.00093 36.2 9.9 53 173-236 182-234 (368)
339 TIGR01202 bchC 2-desacetyl-2-h 63.4 47 0.001 35.0 9.9 18 304-321 213-230 (308)
340 cd08255 2-desacetyl-2-hydroxye 63.2 48 0.001 33.8 9.7 48 172-226 92-139 (277)
341 cd08294 leukotriene_B4_DH_like 62.9 49 0.0011 34.5 9.9 101 173-320 139-239 (329)
342 cd08234 threonine_DH_like L-th 62.9 50 0.0011 34.6 10.0 101 172-319 154-254 (334)
343 cd08285 NADP_ADH NADP(H)-depen 62.7 65 0.0014 34.3 10.9 103 173-320 162-264 (351)
344 cd08295 double_bond_reductase_ 62.4 32 0.00069 36.5 8.5 55 173-237 147-201 (338)
345 PRK07326 short chain dehydroge 61.8 41 0.00089 33.3 8.7 60 178-246 6-65 (237)
346 PRK08594 enoyl-(acyl carrier p 61.8 59 0.0013 33.3 10.0 134 177-322 6-147 (257)
347 TIGR02819 fdhA_non_GSH formald 61.8 49 0.0011 36.5 10.0 117 173-321 181-298 (393)
348 KOG2352|consensus 61.7 9.2 0.0002 43.3 4.2 134 179-336 297-430 (482)
349 cd08232 idonate-5-DH L-idonate 60.4 49 0.0011 34.9 9.4 42 176-225 164-206 (339)
350 cd08301 alcohol_DH_plants Plan 59.1 58 0.0013 35.1 9.9 52 173-235 183-234 (369)
351 PRK06914 short chain dehydroge 59.0 50 0.0011 33.8 9.0 88 180-275 5-93 (280)
352 COG3270 Uncharacterized conser 58.9 19 0.00041 33.5 5.0 92 515-631 33-124 (127)
353 PLN02586 probable cinnamyl alc 58.8 43 0.00092 36.3 8.8 96 175-320 181-276 (360)
354 PRK07109 short chain dehydroge 58.6 75 0.0016 34.1 10.6 130 178-322 8-143 (334)
355 TIGR03026 NDP-sugDHase nucleot 58.5 86 0.0019 34.8 11.3 119 187-341 7-138 (411)
356 cd08242 MDR_like Medium chain 58.1 99 0.0021 32.2 11.2 93 173-320 151-243 (319)
357 COG0677 WecC UDP-N-acetyl-D-ma 57.9 57 0.0012 36.4 9.3 126 187-343 16-148 (436)
358 PRK05786 fabG 3-ketoacyl-(acyl 57.4 58 0.0013 32.3 8.9 127 178-322 5-135 (238)
359 PRK07102 short chain dehydroge 57.4 1E+02 0.0022 30.8 10.7 83 180-272 3-85 (243)
360 PRK07831 short chain dehydroge 56.8 67 0.0014 32.6 9.4 90 177-272 16-106 (262)
361 PRK15182 Vi polysaccharide bio 56.8 88 0.0019 35.2 11.0 116 186-341 12-138 (425)
362 PRK08945 putative oxoacyl-(acy 56.7 1.3E+02 0.0027 30.2 11.3 64 175-245 9-72 (247)
363 KOG1562|consensus 56.7 45 0.00097 35.8 7.9 123 178-340 122-248 (337)
364 PRK07523 gluconate 5-dehydroge 56.4 59 0.0013 32.8 8.9 88 177-272 9-96 (255)
365 COG0604 Qor NADPH:quinone redu 56.4 73 0.0016 34.4 10.0 101 174-323 139-242 (326)
366 PRK08085 gluconate 5-dehydroge 56.4 75 0.0016 32.0 9.7 88 178-273 9-96 (254)
367 PRK07832 short chain dehydroge 56.2 49 0.0011 33.9 8.4 56 185-246 6-61 (272)
368 PRK08063 enoyl-(acyl carrier p 56.1 77 0.0017 31.6 9.6 87 178-272 4-91 (250)
369 PRK07984 enoyl-(acyl carrier p 55.8 85 0.0018 32.3 10.1 86 178-271 6-92 (262)
370 PRK06194 hypothetical protein; 55.7 53 0.0011 33.8 8.5 90 178-275 6-95 (287)
371 COG2961 ComJ Protein involved 55.6 42 0.00092 35.1 7.4 103 208-342 109-211 (279)
372 PRK07666 fabG 3-ketoacyl-(acyl 55.3 71 0.0015 31.8 9.2 87 178-272 7-93 (239)
373 PRK12829 short chain dehydroge 54.9 55 0.0012 32.9 8.4 87 176-272 9-95 (264)
374 PRK07904 short chain dehydroge 54.7 46 0.001 33.9 7.8 67 176-248 6-73 (253)
375 PF00106 adh_short: short chai 54.6 30 0.00065 32.2 6.0 89 184-278 5-95 (167)
376 PRK07677 short chain dehydroge 54.2 61 0.0013 32.7 8.5 86 179-272 2-87 (252)
377 PRK08340 glucose-1-dehydrogena 54.0 65 0.0014 32.6 8.8 83 180-271 2-84 (259)
378 PRK07890 short chain dehydroge 53.8 89 0.0019 31.3 9.7 87 177-271 4-90 (258)
379 PRK08339 short chain dehydroge 53.6 1E+02 0.0022 31.6 10.2 86 178-271 8-93 (263)
380 PRK09186 flagellin modificatio 53.5 66 0.0014 32.2 8.7 87 178-271 4-91 (256)
381 COG0863 DNA modification methy 53.1 32 0.0007 35.8 6.5 49 175-233 220-268 (302)
382 cd08231 MDR_TM0436_like Hypoth 51.7 1.2E+02 0.0025 32.5 10.7 101 176-320 176-278 (361)
383 TIGR01963 PHB_DH 3-hydroxybuty 51.6 1.6E+02 0.0034 29.3 11.1 85 180-272 3-87 (255)
384 PF07091 FmrO: Ribosomal RNA m 51.6 30 0.00064 36.2 5.6 60 176-244 104-163 (251)
385 PRK12826 3-ketoacyl-(acyl-carr 51.4 1.3E+02 0.0029 29.7 10.4 88 178-273 6-93 (251)
386 PRK08251 short chain dehydroge 51.2 1.1E+02 0.0024 30.5 9.8 88 179-273 3-91 (248)
387 PRK06079 enoyl-(acyl carrier p 50.9 93 0.002 31.6 9.3 85 177-271 6-91 (252)
388 PLN02702 L-idonate 5-dehydroge 50.8 1.5E+02 0.0032 31.8 11.3 107 173-320 177-283 (364)
389 PF07942 N2227: N2227-like pro 50.6 1.9E+02 0.0042 30.6 11.6 37 176-222 55-91 (270)
390 PRK06197 short chain dehydroge 50.6 1.5E+02 0.0033 31.0 11.1 88 177-271 15-103 (306)
391 COG3129 Predicted SAM-dependen 50.5 23 0.0005 36.7 4.6 86 176-276 77-166 (292)
392 cd05281 TDH Threonine dehydrog 50.4 80 0.0017 33.5 9.1 99 175-319 161-259 (341)
393 PF07279 DUF1442: Protein of u 50.2 41 0.0009 34.4 6.3 78 178-271 42-123 (218)
394 PF05050 Methyltransf_21: Meth 49.4 30 0.00065 32.2 5.0 39 183-228 1-42 (167)
395 PRK06949 short chain dehydroge 49.1 1E+02 0.0022 30.9 9.2 88 177-272 8-95 (258)
396 cd08261 Zn_ADH7 Alcohol dehydr 48.4 90 0.002 32.9 9.1 46 172-225 154-199 (337)
397 cd08284 FDH_like_2 Glutathione 48.0 1.2E+02 0.0025 32.1 9.8 51 173-234 163-213 (344)
398 PRK05867 short chain dehydroge 47.9 83 0.0018 31.7 8.4 86 178-271 9-94 (253)
399 KOG0821|consensus 47.8 23 0.00051 36.3 4.1 61 177-247 50-110 (326)
400 PRK07454 short chain dehydroge 47.8 1.1E+02 0.0023 30.5 9.0 61 179-247 7-67 (241)
401 PLN02514 cinnamyl-alcohol dehy 47.6 1.3E+02 0.0029 32.3 10.4 96 175-320 178-273 (357)
402 cd08233 butanediol_DH_like (2R 47.6 1.5E+02 0.0033 31.4 10.7 52 173-235 168-219 (351)
403 PRK06603 enoyl-(acyl carrier p 47.6 1.1E+02 0.0023 31.3 9.2 136 178-322 8-146 (260)
404 PRK06505 enoyl-(acyl carrier p 47.5 1.5E+02 0.0032 30.6 10.3 87 177-271 6-93 (271)
405 PRK09242 tropinone reductase; 47.5 1.1E+02 0.0024 30.7 9.3 133 178-324 9-148 (257)
406 PRK07063 short chain dehydroge 47.3 1.3E+02 0.0029 30.3 9.8 87 178-271 7-94 (260)
407 PF11968 DUF3321: Putative met 47.1 26 0.00057 35.8 4.4 112 179-342 53-173 (219)
408 TIGR00959 ffh signal recogniti 46.7 1.1E+02 0.0024 34.5 9.7 87 179-272 99-191 (428)
409 PRK06701 short chain dehydroge 46.6 1.1E+02 0.0023 32.1 9.1 134 177-322 45-181 (290)
410 PRK10083 putative oxidoreducta 46.6 1.9E+02 0.0041 30.4 11.2 53 173-235 156-208 (339)
411 COG5459 Predicted rRNA methyla 46.6 33 0.00071 37.6 5.2 19 304-322 207-225 (484)
412 PRK06198 short chain dehydroge 46.4 1.1E+02 0.0024 30.7 9.1 132 178-324 6-145 (260)
413 PRK06077 fabG 3-ketoacyl-(acyl 46.2 1.3E+02 0.0027 30.0 9.4 136 178-324 6-142 (252)
414 KOG2651|consensus 45.9 27 0.00059 38.6 4.5 41 171-220 147-187 (476)
415 cd05279 Zn_ADH1 Liver alcohol 45.5 1.6E+02 0.0034 31.8 10.5 105 173-321 179-284 (365)
416 cd00401 AdoHcyase S-adenosyl-L 45.4 86 0.0019 35.2 8.5 88 176-322 200-289 (413)
417 TIGR02415 23BDH acetoin reduct 45.3 94 0.002 31.1 8.3 86 185-277 6-91 (254)
418 PF02086 MethyltransfD12: D12 45.0 25 0.00055 35.8 4.1 39 177-225 20-58 (260)
419 cd08286 FDH_like_ADH2 formalde 44.9 1.1E+02 0.0024 32.3 9.1 51 174-235 163-213 (345)
420 KOG0919|consensus 44.9 16 0.00034 38.0 2.4 82 180-285 5-91 (338)
421 PLN02178 cinnamyl-alcohol dehy 44.3 1E+02 0.0022 33.6 8.9 94 176-321 177-272 (375)
422 PF02254 TrkA_N: TrkA-N domain 44.1 30 0.00066 30.6 4.0 67 186-272 4-71 (116)
423 cd08265 Zn_ADH3 Alcohol dehydr 43.9 1.7E+02 0.0037 31.8 10.6 106 173-320 199-305 (384)
424 PF03492 Methyltransf_7: SAM d 43.9 1.5E+02 0.0032 32.3 9.9 42 179-220 18-67 (334)
425 PRK06172 short chain dehydroge 43.8 1.6E+02 0.0034 29.5 9.7 86 178-271 7-92 (253)
426 KOG1331|consensus 43.7 41 0.00089 35.8 5.3 98 177-321 45-143 (293)
427 PRK07774 short chain dehydroge 43.3 98 0.0021 30.9 8.0 88 178-273 6-93 (250)
428 KOG0822|consensus 43.0 87 0.0019 36.2 7.9 119 180-336 370-494 (649)
429 PRK07478 short chain dehydroge 42.9 1.2E+02 0.0026 30.5 8.6 87 178-272 6-92 (254)
430 PRK06139 short chain dehydroge 42.7 1.3E+02 0.0028 32.3 9.3 88 178-273 7-94 (330)
431 PRK07062 short chain dehydroge 42.4 1.4E+02 0.003 30.3 9.0 88 178-272 8-96 (265)
432 PRK05866 short chain dehydroge 42.4 1.2E+02 0.0026 31.7 8.8 62 178-247 40-101 (293)
433 PRK08159 enoyl-(acyl carrier p 42.3 2.1E+02 0.0045 29.5 10.5 134 178-322 10-148 (272)
434 PRK05855 short chain dehydroge 42.3 82 0.0018 35.7 8.1 88 178-273 315-402 (582)
435 PRK07097 gluconate 5-dehydroge 42.2 1.7E+02 0.0038 29.6 9.8 89 177-273 9-97 (265)
436 PRK12384 sorbitol-6-phosphate 42.2 1.6E+02 0.0034 29.7 9.4 87 179-272 3-90 (259)
437 PRK05717 oxidoreductase; Valid 42.2 1.2E+02 0.0026 30.5 8.6 86 178-274 10-95 (255)
438 cd08298 CAD2 Cinnamyl alcohol 42.0 2.5E+02 0.0054 29.3 11.1 93 172-320 162-254 (329)
439 PRK05876 short chain dehydroge 41.5 1.6E+02 0.0035 30.4 9.5 87 178-272 6-92 (275)
440 PRK08415 enoyl-(acyl carrier p 41.3 1.5E+02 0.0033 30.6 9.3 134 178-322 5-143 (274)
441 PF14314 Methyltrans_Mon: Viru 41.2 82 0.0018 37.5 7.8 72 261-351 413-485 (675)
442 PRK07231 fabG 3-ketoacyl-(acyl 41.0 94 0.002 30.9 7.5 87 178-273 5-91 (251)
443 PRK06196 oxidoreductase; Provi 41.0 1.7E+02 0.0037 30.8 9.7 83 178-272 26-108 (315)
444 PRK07814 short chain dehydroge 40.7 1.7E+02 0.0036 29.7 9.4 63 177-247 9-71 (263)
445 PRK08643 acetoin reductase; Va 40.6 1.8E+02 0.004 29.1 9.6 84 180-271 4-87 (256)
446 cd08243 quinone_oxidoreductase 40.6 1.5E+02 0.0033 30.4 9.2 98 174-320 139-236 (320)
447 PLN02896 cinnamyl-alcohol dehy 40.4 2.2E+02 0.0048 30.4 10.7 82 178-275 10-91 (353)
448 PRK08265 short chain dehydroge 40.3 1.2E+02 0.0026 30.8 8.3 83 178-271 6-88 (261)
449 PRK08416 7-alpha-hydroxysteroi 40.2 2.4E+02 0.0053 28.5 10.5 88 178-272 8-96 (260)
450 cd08282 PFDH_like Pseudomonas 40.2 1.3E+02 0.0029 32.5 9.0 112 173-320 172-283 (375)
451 PRK06113 7-alpha-hydroxysteroi 40.1 1.9E+02 0.004 29.1 9.5 87 178-272 11-97 (255)
452 PRK11064 wecC UDP-N-acetyl-D-m 39.4 4.7E+02 0.01 29.2 13.2 37 303-340 100-136 (415)
453 PLN02668 indole-3-acetate carb 39.1 3.4E+02 0.0074 30.3 11.8 50 178-227 64-120 (386)
454 TIGR00006 S-adenosyl-methyltra 39.0 36 0.00077 36.7 4.1 37 302-341 220-256 (305)
455 TIGR03206 benzo_BadH 2-hydroxy 39.0 2.1E+02 0.0046 28.3 9.7 87 178-273 3-90 (250)
456 PRK06940 short chain dehydroge 38.9 1.9E+02 0.0042 29.8 9.6 114 189-321 11-124 (275)
457 PRK08278 short chain dehydroge 38.7 1.3E+02 0.0028 30.9 8.2 131 178-323 6-149 (273)
458 KOG3201|consensus 38.7 33 0.00072 33.7 3.4 123 178-342 30-155 (201)
459 cd08279 Zn_ADH_class_III Class 38.6 2.2E+02 0.0049 30.5 10.4 102 173-319 178-279 (363)
460 PRK05396 tdh L-threonine 3-deh 38.5 1.6E+02 0.0034 31.1 9.1 100 176-321 162-262 (341)
461 PRK12744 short chain dehydroge 38.3 1.4E+02 0.0031 30.0 8.4 132 178-324 8-147 (257)
462 PRK05872 short chain dehydroge 38.2 1.5E+02 0.0032 31.0 8.7 87 177-272 8-94 (296)
463 cd08287 FDH_like_ADH3 formalde 38.2 2.4E+02 0.0052 29.7 10.4 105 173-322 164-268 (345)
464 PRK07792 fabG 3-ketoacyl-(acyl 38.0 1.6E+02 0.0035 31.0 9.0 86 178-272 12-98 (306)
465 cd08296 CAD_like Cinnamyl alco 37.4 1.9E+02 0.0042 30.4 9.5 99 173-320 159-257 (333)
466 PRK07530 3-hydroxybutyryl-CoA 37.0 2.5E+02 0.0055 29.3 10.2 42 180-229 6-47 (292)
467 PRK08213 gluconate 5-dehydroge 36.8 2.8E+02 0.0061 27.8 10.3 90 177-274 11-100 (259)
468 PRK07889 enoyl-(acyl carrier p 36.7 1.3E+02 0.0027 30.7 7.7 132 177-322 6-145 (256)
469 cd08256 Zn_ADH2 Alcohol dehydr 36.4 2.5E+02 0.0055 29.7 10.3 52 173-235 170-221 (350)
470 PF01795 Methyltransf_5: MraW 36.3 24 0.00051 38.1 2.3 38 302-342 221-258 (310)
471 PRK12743 oxidoreductase; Provi 36.3 1.5E+02 0.0032 30.0 8.1 85 179-271 3-88 (256)
472 PRK00050 16S rRNA m(4)C1402 me 36.2 42 0.00092 35.9 4.1 37 302-341 216-252 (296)
473 TIGR02632 RhaD_aldol-ADH rhamn 36.1 1.7E+02 0.0037 34.9 9.6 88 178-272 414-502 (676)
474 PRK05875 short chain dehydroge 35.0 2.7E+02 0.0058 28.3 9.9 88 178-272 7-95 (276)
475 PRK05854 short chain dehydroge 34.8 3.2E+02 0.0069 28.8 10.6 87 178-271 14-101 (313)
476 PRK07074 short chain dehydroge 34.7 1.3E+02 0.0029 30.1 7.5 82 180-271 4-85 (257)
477 cd08240 6_hydroxyhexanoate_dh_ 34.4 3E+02 0.0066 29.1 10.5 99 176-320 174-272 (350)
478 cd08269 Zn_ADH9 Alcohol dehydr 34.3 2.8E+02 0.0061 28.4 10.0 103 172-319 124-226 (312)
479 PRK08267 short chain dehydroge 34.2 1.9E+02 0.0042 29.0 8.6 82 181-272 4-86 (260)
480 PF03657 UPF0113: Uncharacteri 33.9 16 0.00035 35.6 0.6 72 494-575 37-110 (162)
481 PRK07806 short chain dehydroge 33.8 3.4E+02 0.0075 26.9 10.3 128 178-322 6-134 (248)
482 PRK14974 cell division protein 33.8 2.9E+02 0.0063 30.1 10.2 55 179-236 140-198 (336)
483 cd08291 ETR_like_1 2-enoyl thi 33.6 1.9E+02 0.0042 30.3 8.7 47 177-236 142-191 (324)
484 cd08245 CAD Cinnamyl alcohol d 33.6 3E+02 0.0064 28.7 10.1 45 173-225 158-202 (330)
485 PRK08589 short chain dehydroge 33.5 2.3E+02 0.005 29.0 9.1 86 178-272 6-91 (272)
486 PRK10867 signal recognition pa 33.4 1.3E+02 0.0027 34.1 7.5 90 179-272 100-192 (433)
487 PRK06138 short chain dehydroge 33.4 1.8E+02 0.0038 29.0 8.0 88 178-274 5-92 (252)
488 PRK06124 gluconate 5-dehydroge 33.2 2.9E+02 0.0063 27.6 9.7 87 177-271 10-96 (256)
489 COG1062 AdhC Zn-dependent alco 33.2 93 0.002 34.1 6.1 54 171-236 179-233 (366)
490 TIGR02817 adh_fam_1 zinc-bindi 33.1 1.7E+02 0.0037 30.6 8.2 94 178-319 149-244 (336)
491 PF01488 Shikimate_DH: Shikima 33.0 1.7E+02 0.0037 27.1 7.2 76 177-277 11-86 (135)
492 PRK06500 short chain dehydroge 32.7 2.1E+02 0.0046 28.3 8.5 127 178-322 6-136 (249)
493 TIGR03589 PseB UDP-N-acetylglu 32.7 3.1E+02 0.0067 29.1 10.1 79 178-271 4-82 (324)
494 cd05288 PGDH Prostaglandin deh 32.2 2.4E+02 0.0051 29.3 9.1 101 174-320 142-242 (329)
495 PF04378 RsmJ: Ribosomal RNA s 32.1 29 0.00064 36.1 2.1 74 184-273 62-135 (245)
496 PRK05884 short chain dehydroge 31.5 2.2E+02 0.0048 28.3 8.4 122 185-322 6-130 (223)
497 KOG2940|consensus 31.5 72 0.0016 33.2 4.6 106 178-331 73-180 (325)
498 PRK06182 short chain dehydroge 31.4 1.5E+02 0.0032 30.3 7.2 81 178-272 3-83 (273)
499 cd08274 MDR9 Medium chain dehy 31.3 2.4E+02 0.0052 29.6 9.0 17 304-320 255-271 (350)
500 PRK09291 short chain dehydroge 31.1 3.8E+02 0.0083 26.6 10.1 78 180-271 4-81 (257)
No 1
>KOG2198|consensus
Probab=100.00 E-value=2e-71 Score=580.31 Aligned_cols=349 Identities=46% Similarity=0.758 Sum_probs=318.8
Q ss_pred CCCCChhHhhhccHHHHHHHHhCCCCC-HHHHHHHHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhccccccc
Q psy17365 32 TRHENYAEIVRENKDFEQYYKAQKICP-ENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSE 110 (646)
Q Consensus 32 ~~~~~~~~~~~~n~~f~~yy~~~~~~~-~~e~~~f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~ 110 (646)
+....|..|.+.|+.|+.||+.|.++. ++||..|++.++.+||.+||+.... .+.+++....++.++..+... ..++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~l~~f~~~~e~~~~~~~ir~~Lps~fr~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~E~ 88 (375)
T KOG2198|consen 11 RMLKDKKKIAKTNPKFEKYYKALDHFDKEDEFGDFWETIRKPLPSTFRYTALV-NNADALLSIFEEYEFESLKDR-VIEG 88 (375)
T ss_pred hhhhhhHHhhccchhhHHHHHHHhcCcchHHHHHHHHHHHhccchhhhHHHhc-cchHHHHHHHhhccchhhhhh-hccc
Confidence 334578899999999999999999998 9999999999999999999999998 788899888888777666554 3344
Q ss_pred ccccCcccccCCCCCceeeeeccccccccchhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCch
Q psy17365 111 EEKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGS 190 (646)
Q Consensus 111 ~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGg 190 (646)
+....+.++||||++++|+.++....+++++.+.+||.|++.++..|.|++||++||+|+++|+++||++||||||||||
T Consensus 89 ~~~e~~~~~p~~p~~~a~~~~~~~~~~r~~~~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~ 168 (375)
T KOG2198|consen 89 LKFEAPFELPWYPDNLAFEKDVKLDEIRKSPPLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGG 168 (375)
T ss_pred cccCccccCCCCcccchhhhcCcccccccCCchhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCc
Confidence 55667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecC
Q psy17365 191 KTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCD 270 (646)
Q Consensus 191 KT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D 270 (646)
||+||++.++.+. ..|.|+|||++.+|+.+|+|+++++..+++.++++|++.+|+.... ..+......||+||||
T Consensus 169 Kt~qLLeal~~~~----~~g~vvaND~d~~R~~~L~~q~~~l~~~~~~v~~~~~~~~p~~~~~-~~~~~~~~~fDrVLvD 243 (375)
T KOG2198|consen 169 KTAQLLEALHKDP----TRGYVVANDVDPKRLNMLVHQLKRLPSPNLLVTNHDASLFPNIYLK-DGNDKEQLKFDRVLVD 243 (375)
T ss_pred cHHHHHHHHhcCC----CCCeeEecccCHHHHHHHHHHHhccCCcceeeecccceeccccccc-cCchhhhhhcceeEEe
Confidence 9999999998432 2689999999999999999999999999999999999999987543 1122456789999999
Q ss_pred CCCCCCcccccCcccccc-CCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEee
Q psy17365 271 VPCTGDGTMRKNPDIWTK-WTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVD 349 (646)
Q Consensus 271 ~PCSG~G~lrk~pd~~~~-w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~ 349 (646)
|||||||++|+++++|.. |+.....+|+.+|.+||.+++++||+||+|||||||+||+|||+||+++|++.++++++++
T Consensus 244 VPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSLnpieNEaVV~~~L~~~~~~~~lv~ 323 (375)
T KOG2198|consen 244 VPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSLNPIENEAVVQEALQKVGGAVELVD 323 (375)
T ss_pred cccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCCCchhhHHHHHHHHHHhcCccccee
Confidence 999999999999999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCccCCCCcccccCCCCCCCccCCcCCCccccc
Q psy17365 350 VSAITPALKYAPGLSQWRPASKDNLDGYGSFDEVPDKWK 388 (646)
Q Consensus 350 ~~~~lp~l~~~~G~~~w~v~~~~~~~~~~~~~~~~~~~~ 388 (646)
++..+|.+++.+|.+.|++.+..+ .+|.++.++|....
T Consensus 324 ~~~~lp~l~r~~g~t~~~~~~~~~-~~~~~~~~vp~~~~ 361 (375)
T KOG2198|consen 324 VSGDLPGLKRMFGSTGWKVHDKVL-KWFTSPLEVPKLVA 361 (375)
T ss_pred eccccccceecCCCCcceEEecCc-ccccCccccccchh
Confidence 999999999999999999999888 68999999987643
No 2
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=100.00 E-value=2.2e-63 Score=548.81 Aligned_cols=444 Identities=22% Similarity=0.328 Sum_probs=333.3
Q ss_pred HHHHHHHHhCCCCCH-HHHHHHHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccccCCC
Q psy17365 45 KDFEQYYKAQKICPE-NEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYP 123 (646)
Q Consensus 45 ~~f~~yy~~~~~~~~-~e~~~f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~p 123 (646)
+.|.++|+. ++++ +|+++|++++++|+|+++|||++| ++.+++.+.|++.++ ...++||+|
T Consensus 6 ~~fv~~~~~--~lg~~ee~~~~l~a~~~~~~~~lRvN~lK-~~~~~~~~~L~~~g~---------------~~~~~p~~~ 67 (470)
T PRK11933 6 DAFLTQMRE--AMPSHLSMDDFIAACQRPLRRSIRVNTLK-ISVADFLQLMAPYGW---------------TLTPIPWCE 67 (470)
T ss_pred HHHHHHHHH--HhCCcHHHHHHHHHcCCCCCeEEEEcCCc-CCHHHHHHHHHhCCC---------------ceeECCCCC
Confidence 446666663 4555 689999999999999999999999 999999888866543 234789999
Q ss_pred CCceeeeec-cccccccchhhhhhhhhhhcccccccEEEeccccccccccc--CCCCCCeEEEEcCCCchHHHHHHHHhh
Q psy17365 124 EQMGWQLQL-SRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLL--DVQTHHKVLDMCAAPGSKTAQIIEMIH 200 (646)
Q Consensus 124 ~~l~~~~~~-~~~~l~~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~L--d~~pg~~VLDmCAaPGgKT~~lae~l~ 200 (646)
+++.+.... ....+..++.| ..|.||+||++||+|+.+| +++||++||||||||||||+|||++|+
T Consensus 68 ~g~~~~~~~~~~~~~~~~~~~-----------~~G~~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~ 136 (470)
T PRK11933 68 EGFWIERDDEDALPLGNTAEH-----------LSGLFYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMN 136 (470)
T ss_pred ceEEEecCccccCCcccChHH-----------HCCcEEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcC
Confidence 976432110 01135666655 6999999999999999999 999999999999999999999999986
Q ss_pred hcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccc
Q psy17365 201 AADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMR 280 (646)
Q Consensus 201 ~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lr 280 (646)
+.|.|+|||++.+|++.|.+|++|+|+.|+.+++.|+..+.... ...||+||+||||||+|++|
T Consensus 137 -------~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~---------~~~fD~ILvDaPCSG~G~~r 200 (470)
T PRK11933 137 -------NQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAAL---------PETFDAILLDAPCSGEGTVR 200 (470)
T ss_pred -------CCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhc---------hhhcCeEEEcCCCCCCcccc
Confidence 68999999999999999999999999999999999998764321 24699999999999999999
Q ss_pred cCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEeeccccCCCCccC
Q psy17365 281 KNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALKYA 360 (646)
Q Consensus 281 k~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~~~~~lp~l~~~ 360 (646)
|+|++++.|+++++..++.+|++||.+|+++|||||+|||||||++|+|||+||+++|+++++.++++++...++
T Consensus 201 k~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT~~~eENE~vV~~~L~~~~~~~~~~~~~~~~~----- 275 (470)
T PRK11933 201 KDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCTLNREENQAVCLWLKETYPDAVEFEPLGDLFP----- 275 (470)
T ss_pred cCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCHHHHHHHHHHHHHHCCCcEEecccccccc-----
Confidence 999999999999999999999999999999999999999999999999999999999999986566655421111
Q ss_pred CCCcccccCCCCCCCccCCcCCCcccccccccCCCCCCCCCcccccccccccccCCcCCCCCcccccCCCCCCCCCCCCC
Q psy17365 361 PGLSQWRPASKDNLDGYGSFDEVPDKWKTQVRPQMFPTGDPSHHLERCSVFGLLPHQQGPRADNGEAESKPEPEASSPTR 440 (646)
Q Consensus 361 ~G~~~w~v~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~~~~~~~l~~c~~~Ri~Ph~~~tgG~~~~k~~~~~~~~~~~~~ 440 (646)
|... ......|+ |+|||.++|+|||+.+..+..... .
T Consensus 276 -~~~~------------------------------------~~~~~~~~--r~~P~~~~~dGfFiA~lrk~~~~~----~ 312 (470)
T PRK11933 276 -GAEK------------------------------------ALTEEGFL--HVFPQIYDSEGFFVARLRKTASVP----R 312 (470)
T ss_pred -cccc------------------------------------ccCCCCeE--EECCCCCCCcceeeEEEEecCCcc----c
Confidence 1100 00134688 999999999999987743321110 0
Q ss_pred CCCcccccCCCCCCCCCCccccC-CCcchhhhhHhhhCCCCCCCCCceeeeccCCCcCEEEEcChhhHHHHhhCCCCceE
Q psy17365 441 EPPSKKRKRQPQGYKEDPFVFFN-TDEAVWPPIRDFYEISPSLPVDCLLTRCLVGKKKIIYFTSPMVKNIIQSNENNLKI 519 (646)
Q Consensus 441 ~~~~~k~~~~~~~~~~~pf~~~~-~~~~~~~~i~~~ygi~~~f~~~~~~~R~~~g~~~~iy~~s~~~~~i~~~~~~~lki 519 (646)
.+..+++. . ..||.-.. .+.+.|....+.|+++.. +...++.+ +++||++...... ...+|||
T Consensus 313 ~~~~~~~~-~-----k~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~-----~~~l~~~p~~~~~----~~~~l~v 376 (470)
T PRK11933 313 LPAPKYKV-G-----KFPFTPAKDKEAQEIRQAAASVGLSWP-ENLRLWQR-----DKEVWLFPAGIEP----LIGKVRF 376 (470)
T ss_pred cccccccc-c-----cccccccchhHHHHHHHHHHhcCCCCC-CCCcEEEE-----CCEEEEeccccch----hhcCCeE
Confidence 01111111 0 01222222 223457766666777532 22335554 3689999886532 3467999
Q ss_pred EeCceeeEEEecCCCCccceeeccchhHHHhhhhCCCcEEEeCHHHHHHHHhcCCCCCCccccccCHHHHhhhcccCCCC
Q psy17365 520 INTGVKSFARCDNKVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILNNSTPEQPTDLELLRPETRQTLTREGFGV 599 (646)
Q Consensus 520 v~~Gvk~F~r~~~~~~~c~~Ri~~eg~~~l~~~~~~kr~v~~~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 599 (646)
+++|+.+=+-.+. +|..++..+..+.+.- .++.++++.++....|..+.-. .+ + ...-
T Consensus 377 ~r~Gl~lg~~kk~-----rfePs~ala~~l~~~~-~~~~~~l~~~~~~~Yl~ge~l~----~~---~---------~~~~ 434 (470)
T PRK11933 377 SRIGIKLAETHKK-----GYRWQHEAVIALASPD-NANAFELTPQEAEEWYMGRDIY----PQ---T---------APPA 434 (470)
T ss_pred eeeceeEeeeecC-----CeeEcHHHHHHhCccc-ccceEecCHHHHHHHHCCCCcc----CC---C---------CCCC
Confidence 9999999776543 5899999988887765 7899999999999999876654 11 1 1123
Q ss_pred ccEEEEEecCCCeEEEEeeec
Q psy17365 600 GSCLLELQDDLPLSLVGWRGK 620 (646)
Q Consensus 600 G~~v~~~~~~~~~~~~~w~g~ 620 (646)
|-++|.++ +.++=++-..|.
T Consensus 435 G~~lv~~~-g~~lG~gK~~~~ 454 (470)
T PRK11933 435 GEVIVTYQ-GQPIGLAKRVGN 454 (470)
T ss_pred CEEEEEEC-CEeeEEEEeeCC
Confidence 77777765 444545555553
No 3
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.1e-58 Score=491.20 Aligned_cols=291 Identities=30% Similarity=0.474 Sum_probs=237.2
Q ss_pred HHHHHhCCCCCHHHHHHHHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccccCCCCCce
Q psy17365 48 EQYYKAQKICPENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMG 127 (646)
Q Consensus 48 ~~yy~~~~~~~~~e~~~f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~l~ 127 (646)
..++.. .+++++|+.|++++++++|+++|||+++ .+.+++.+.|+..++.. .+..+.+.++.
T Consensus 59 ~~~~~~--~~~~~~~~~~~~a~~~~~~~~~Rvn~lk-~~~~~~~~~l~~~~~~~---------------~~~~~~~~~~~ 120 (355)
T COG0144 59 VEKLPD--ALGEDEAEAIAAALLRPPPRSLRVNTLK-ADVEELLEALEEAGVLD---------------EKPWVLDEVLR 120 (355)
T ss_pred HHHHHH--HcChHHHHHHHHHcCCCCCeeEEEcCcc-CCHHHHHHHHhhccccc---------------ccCCccccEEE
Confidence 444442 4466779999999999999999999999 99999999887654321 11123333322
Q ss_pred eeeeccccccccchhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCC
Q psy17365 128 WQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPV 207 (646)
Q Consensus 128 ~~~~~~~~~l~~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~ 207 (646)
+. ....+.+.++| ..|+|++||.+||+|+.+|+++||++||||||||||||+|||++|.
T Consensus 121 --i~-~~~~~~~~~~~-----------~~G~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~------- 179 (355)
T COG0144 121 --IE-ASGPIGRLPEF-----------AEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELME------- 179 (355)
T ss_pred --ec-CCCCcccChhh-----------hceEEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcC-------
Confidence 21 12234445544 7999999999999999999999999999999999999999999986
Q ss_pred CC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCcccc
Q psy17365 208 PS-GLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIW 286 (646)
Q Consensus 208 ~~-G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~ 286 (646)
+. +.|+|+|++++|++.|++|++|+|+.|+.+++.|+..++.... ...+||+||+||||||+|++||+|+++
T Consensus 180 ~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~-------~~~~fD~iLlDaPCSg~G~irr~Pd~~ 252 (355)
T COG0144 180 NEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLP-------GGEKFDRILLDAPCSGTGVIRRDPDVK 252 (355)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEeccccccccccc-------ccCcCcEEEECCCCCCCcccccCcccc
Confidence 43 4569999999999999999999999999999999988765432 113699999999999999999999999
Q ss_pred ccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEeeccccCCCCccCCCCccc
Q psy17365 287 TKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALKYAPGLSQW 366 (646)
Q Consensus 287 ~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~~~~~lp~l~~~~G~~~w 366 (646)
+.|++.++..++.+|.+||.+|+++|||||+|||||||++|+|||+||.++|+++++ ++++++... |
T Consensus 253 ~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTCS~~~eENE~vV~~~L~~~~~-~~~~~~~~~------------~ 319 (355)
T COG0144 253 WRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTCSLTPEENEEVVERFLERHPD-FELEPVRLP------------W 319 (355)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEccCCchhcCHHHHHHHHHhCCC-ceeeccccc------------c
Confidence 999999999999999999999999999999999999999999999999999999974 777765411 2
Q ss_pred ccCCCCCCCccCCcCCCcccccccccCCCCCCCCCcccccccccccccCCcCCCCCccccc
Q psy17365 367 RPASKDNLDGYGSFDEVPDKWKTQVRPQMFPTGDPSHHLERCSVFGLLPHQQGPRADNGEA 427 (646)
Q Consensus 367 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~fp~~~~~~~l~~c~~~Ri~Ph~~~tgG~~~~k 427 (646)
... ++... ..+.+|+ |+|||.+.|.|||..+
T Consensus 320 ~~~--------------------------~~~~~--~~~~~~~--r~~p~~~~~dGFFia~ 350 (355)
T COG0144 320 GPL--------------------------FEGLG--SELGKTR--RLYPHVHGTDGFFIAK 350 (355)
T ss_pred ccc--------------------------ccccc--cccCCeE--EECCCCCCCCCeEEEE
Confidence 110 00000 1367899 9999999889998865
No 4
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=100.00 E-value=1.5e-55 Score=460.58 Aligned_cols=277 Identities=32% Similarity=0.508 Sum_probs=229.9
Q ss_pred HHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccccCCCCCceeeeeccccccccchhhh
Q psy17365 65 MLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFS 144 (646)
Q Consensus 65 f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~ 144 (646)
+|++++.++|.++|||++| ++.+++.+.|+++++. ..+++|.|+.+.. .......+..++.|
T Consensus 1 il~~~n~~~~~~iRvN~~k-~~~~~~~~~L~~~g~~---------------~~~~~~~~~~~~~-~~~~~~~i~~l~~~- 62 (283)
T PF01189_consen 1 ILEANNCPPPVTIRVNTLK-ISREELLEELEEEGIQ---------------LEPIPRSPDALRV-IGKSPYSICSLPEF- 62 (283)
T ss_dssp HHHHCTS--GEEEEE-TTT-SSHHHHHHHHHHTTHE---------------EEEETSTTCEEEE-EEECSSCGGGSHHH-
T ss_pred CccccCCCCCeEEEECcCc-CCHHHHHHHHhhcccc---------------eEEcccccchhcc-ccccccchhhchhh-
Confidence 6899999999999999999 9999999999887642 2466778875221 22233456666766
Q ss_pred hhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHH
Q psy17365 145 KLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYM 224 (646)
Q Consensus 145 ~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~ 224 (646)
+.|++++||.+||+++.+|+++||+.||||||||||||+|||++|. +.|.|+|+|++.+|+..
T Consensus 63 ----------~~G~~~vQd~sS~l~~~~L~~~~~~~VLD~CAapGgKt~~la~~~~-------~~g~i~A~D~~~~Rl~~ 125 (283)
T PF01189_consen 63 ----------KNGLFYVQDESSQLVALALDPQPGERVLDMCAAPGGKTTHLAELMG-------NKGEIVANDISPKRLKR 125 (283)
T ss_dssp ----------HTTSEEEHHHHHHHHHHHHTTTTTSEEEESSCTTSHHHHHHHHHTT-------TTSEEEEEESSHHHHHH
T ss_pred ----------hCCcEEecccccccccccccccccccccccccCCCCceeeeeeccc-------chhHHHHhccCHHHHHH
Confidence 6999999999999999999999999999999999999999999986 68999999999999999
Q ss_pred HHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHH
Q psy17365 225 LVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRI 304 (646)
Q Consensus 225 L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~I 304 (646)
|..|++|+|..++.+++.|++.+..... ...||+||+||||||+|+++++|++.+.|++.++..++.+|.+|
T Consensus 126 l~~~~~r~g~~~v~~~~~D~~~~~~~~~--------~~~fd~VlvDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~i 197 (283)
T PF01189_consen 126 LKENLKRLGVFNVIVINADARKLDPKKP--------ESKFDRVLVDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREI 197 (283)
T ss_dssp HHHHHHHTT-SSEEEEESHHHHHHHHHH--------TTTEEEEEEECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHH
T ss_pred HHHHHHhcCCceEEEEeecccccccccc--------ccccchhhcCCCccchhhhhhccchhhcccccccchHHHHHHHH
Confidence 9999999999999999999887532111 13599999999999999999999998888999999999999999
Q ss_pred HHHHHHhh----ccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEeeccccCCCCccCCCCcccccCCCCCCCccCCc
Q psy17365 305 VKRGVEML----AVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALKYAPGLSQWRPASKDNLDGYGSF 380 (646)
Q Consensus 305 L~~A~~lL----KpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~~~~~lp~l~~~~G~~~w~v~~~~~~~~~~~~ 380 (646)
|++|++++ ||||+|||||||++|+|||+||++||++++ .++++++....+ .+|+..|
T Consensus 198 L~~a~~~~~~~~k~gG~lvYsTCS~~~eENE~vV~~fl~~~~-~~~l~~~~~~~~----~~~~~~~-------------- 258 (283)
T PF01189_consen 198 LDNAAKLLNIDFKPGGRLVYSTCSLSPEENEEVVEKFLKRHP-DFELVPIPLPEP----PPGFKSY-------------- 258 (283)
T ss_dssp HHHHHHCEHHHBEEEEEEEEEESHHHGGGTHHHHHHHHHHST-SEEEECCESSTC----EEESSGG--------------
T ss_pred HHHHHHhhcccccCCCeEEEEeccHHHHHHHHHHHHHHHhCC-CcEEEecccccc----ccccccc--------------
Confidence 99999999 999999999999999999999999999997 488887652111 1112111
Q ss_pred CCCcccccccccCCCCCCCCCcccccccccccccCCcCCCCCccccc
Q psy17365 381 DEVPDKWKTQVRPQMFPTGDPSHHLERCSVFGLLPHQQGPRADNGEA 427 (646)
Q Consensus 381 ~~~~~~~~~~~~~~~fp~~~~~~~l~~c~~~Ri~Ph~~~tgG~~~~k 427 (646)
+ ..+.|+ |+|||.++|+|||+++
T Consensus 259 -----------------~-----~~~~~~--r~~P~~~~~dGFFiA~ 281 (283)
T PF01189_consen 259 -----------------P-----IGEGCL--RILPHRHGTDGFFIAK 281 (283)
T ss_dssp -----------------C-----TGGGSE--EESTTTSSSSSEEEEE
T ss_pred -----------------c-----CCCCEE--EeCCCCCCCCCEEEEE
Confidence 0 257889 9999999999998754
No 5
>KOG1122|consensus
Probab=100.00 E-value=2.6e-52 Score=439.97 Aligned_cols=290 Identities=28% Similarity=0.414 Sum_probs=241.5
Q ss_pred CCCCHHHHHHHHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccc-cCCCCCceeeeecc
Q psy17365 55 KICPENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICL-PWYPEQMGWQLQLS 133 (646)
Q Consensus 55 ~~~~~~e~~~f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~-~~~p~~l~~~~~~~ 133 (646)
.+++..|..+||++...+.|+++|.||+| .-..++...|.+.+. ...++ +|..-|+. +.-+
T Consensus 147 e~~~~~ev~~~~e~~~~~rp~tir~ntlk-~~rrd~~~~L~nrgv---------------~~~pl~~ws~vgl~--v~~s 208 (460)
T KOG1122|consen 147 ELFPLVEVYEFLEANEKPRPVTIRTNTLK-TRRRDLAVELSNRGV---------------NLDPLGKWSKVGLV--VFDS 208 (460)
T ss_pred ccccHHHHHHHHHhhcCCCCeeEEecccc-hhhhhHHHHHHhccc---------------CcccccccccceEE--EecC
Confidence 45577899999999999999999999999 777777777765542 11233 37766553 3223
Q ss_pred ccccccchhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEE
Q psy17365 134 RRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVV 213 (646)
Q Consensus 134 ~~~l~~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~Vv 213 (646)
-..+...|.| ..|++..|+++|+||+.+|+||||++||||||||||||+|||++|+ ++|.|+
T Consensus 209 ~vpigat~e~-----------lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMk-------n~G~I~ 270 (460)
T KOG1122|consen 209 VVPIGATPEY-----------LAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMK-------NTGVIF 270 (460)
T ss_pred ccccCCchhh-----------cccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHc-------CCceEE
Confidence 2334555544 5999999999999999999999999999999999999999999997 799999
Q ss_pred EEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcch
Q psy17365 214 ANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSN 293 (646)
Q Consensus 214 A~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~ 293 (646)
|||.+..|+..+..|+.|+|+.|.+++++|+..||.... ...|||||+||||||+|++.|.+.+.+..+..+
T Consensus 271 AnD~n~~r~~~l~~n~~rlGv~ntiv~n~D~~ef~~~~~--------~~~fDRVLLDAPCSGtgvi~K~~~vkt~k~~~d 342 (460)
T KOG1122|consen 271 ANDSNENRLKSLKANLHRLGVTNTIVSNYDGREFPEKEF--------PGSFDRVLLDAPCSGTGVISKDQSVKTNKTVKD 342 (460)
T ss_pred ecccchHHHHHHHHHHHHhCCCceEEEccCccccccccc--------CcccceeeecCCCCCCcccccccccccchhHHH
Confidence 999999999999999999999999999999998874221 237999999999999999999999855445789
Q ss_pred hhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEeeccccCCCCccCCCCcccccCCCCC
Q psy17365 294 GNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALKYAPGLSQWRPASKDN 373 (646)
Q Consensus 294 ~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~~~~~lp~l~~~~G~~~w~v~~~~~ 373 (646)
+.+++.+|+++|..|.+++++||+|||||||+.++|||+||+++|++++ .++|+++...+++ +| .
T Consensus 343 i~~~~~LQr~LllsAi~lv~~GGvLVYSTCSI~~~ENE~vV~yaL~K~p-~~kL~p~~~~iG~----~G--~-------- 407 (460)
T KOG1122|consen 343 ILRYAHLQRELLLSAIDLVKAGGVLVYSTCSITVEENEAVVDYALKKRP-EVKLVPTGLDIGG----EG--R-------- 407 (460)
T ss_pred HHHhHHHHHHHHHHHHhhccCCcEEEEEeeecchhhhHHHHHHHHHhCC-ceEeccccccCCC----CC--c--------
Confidence 9999999999999999999999999999999999999999999999997 5999988744432 44 1
Q ss_pred CCccCCcCCCcccccccccCCCCCCCCCcccccccccccccCCcCCCCCccccc
Q psy17365 374 LDGYGSFDEVPDKWKTQVRPQMFPTGDPSHHLERCSVFGLLPHQQGPRADNGEA 427 (646)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~~~~~fp~~~~~~~l~~c~~~Ri~Ph~~~tgG~~~~k 427 (646)
++...|.| .|.-.. |+|||.++-.|||.+|
T Consensus 408 -----------------~~~~~~~p-----sl~~~~--r~yPh~hnmdgffvaK 437 (460)
T KOG1122|consen 408 -----------------FRGGRFHP-----SLKLTR--RFYPHVHNMDGFFVAK 437 (460)
T ss_pred -----------------ccCcccCc-----chhhee--eecCcccCCchHHHHH
Confidence 11233455 366667 9999999999999877
No 6
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.5e-48 Score=429.60 Aligned_cols=249 Identities=28% Similarity=0.463 Sum_probs=218.6
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccccCCCCCceeeeeccccc
Q psy17365 57 CPENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRA 136 (646)
Q Consensus 57 ~~~~e~~~f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~ 136 (646)
+++++++++++++++++|+++|||++| ++.+++.+.|++.++ ...+.||+|+++. +......
T Consensus 146 ~g~~~~~~~~~~~~~~~~~~~RvN~~k-~~~~~~~~~l~~~g~---------------~~~~~~~~~~~~~--~~~~~~~ 207 (431)
T PRK14903 146 LPEEAVLRIMEWNQEPLPTMLRVNSLA-ITREEVIKILAEEGT---------------EAVPGKHSPFSLI--VRKLGVN 207 (431)
T ss_pred cCHHHHHHHHHHhcCCCCeeEEeeCCc-CCHHHHHHHHHHCCC---------------eeEECCCCCceEE--EcCCCCC
Confidence 456899999999999999999999999 999999998876653 2246778888653 2211223
Q ss_pred cccchhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEc
Q psy17365 137 IRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAND 216 (646)
Q Consensus 137 l~~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~D 216 (646)
+..++.| ..|.+++||.+||+++.++++++|++|||+|||||+||+++++.++ +.|.|+|+|
T Consensus 208 ~~~~~~~-----------~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~-------~~g~V~a~D 269 (431)
T PRK14903 208 MNDSRVI-----------KDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMK-------DQGKILAVD 269 (431)
T ss_pred cccChHH-----------HCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcC-------CCCEEEEEE
Confidence 5556655 6999999999999999999999999999999999999999999875 578999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhh
Q psy17365 217 VDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNN 296 (646)
Q Consensus 217 is~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~ 296 (646)
++++|++.+++|++++|+.++.++++|+..++... ...||+|||||||||.|+++++|++++.|++.++..
T Consensus 270 is~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~---------~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~ 340 (431)
T PRK14903 270 ISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYV---------QDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKK 340 (431)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhh---------hccCCEEEECCCCCCCccccCChHHHHhCCHHHHHH
Confidence 99999999999999999999999999998764311 246999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEeecc
Q psy17365 297 LHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVS 351 (646)
Q Consensus 297 l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~~~ 351 (646)
++.+|.+||.+|+++|||||+|||||||++++|||+||.+||+++++ ++++++.
T Consensus 341 l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~~eEne~vv~~fl~~~~~-~~~~~~~ 394 (431)
T PRK14903 341 LSEIQLRIVSQAWKLLEKGGILLYSTCTVTKEENTEVVKRFVYEQKD-AEVIDIR 394 (431)
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEEECCCChhhCHHHHHHHHHhCCC-cEEeccc
Confidence 99999999999999999999999999999999999999999999874 6776653
No 7
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=2e-47 Score=421.68 Aligned_cols=246 Identities=25% Similarity=0.381 Sum_probs=215.3
Q ss_pred CCCHHHHHHHHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccccCCCCCceeeeecccc
Q psy17365 56 ICPENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRR 135 (646)
Q Consensus 56 ~~~~~e~~~f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~ 135 (646)
.+++++++++++++++++|+++|||++| ++.+++.+.|++.++ ...+.||+|+++.+. ....
T Consensus 160 ~~g~~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~---------------~~~~~~~~~~~~~~~--~~~~ 221 (434)
T PRK14901 160 WLGLEEAEQLCKWFNQPPSLDLRINPLR-TSLEEVQAALAEAGI---------------TATPIPGLPQGLRLT--GNPG 221 (434)
T ss_pred HhCHHHHHHHHHHhCCCCCeEEEECCCC-CCHHHHHHHHHHCCC---------------ceEECCCCCCeEEec--CCCC
Confidence 3457889999999999999999999999 999999988876653 234678999876432 2122
Q ss_pred ccccchhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEE
Q psy17365 136 AIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAN 215 (646)
Q Consensus 136 ~l~~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~ 215 (646)
.+..+|.| ..|++++||.+|++++.+|++++|++|||+|||||+||++++++++ +.|.|+|+
T Consensus 222 ~~~~~~~f-----------~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~-------~~g~v~a~ 283 (434)
T PRK14901 222 SIRQLPGY-----------EEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMG-------DQGEIWAV 283 (434)
T ss_pred ccccChHH-----------hCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhC-------CCceEEEE
Confidence 35666666 6999999999999999999999999999999999999999999875 57899999
Q ss_pred cCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhh
Q psy17365 216 DVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGN 295 (646)
Q Consensus 216 Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~ 295 (646)
|+++.|++.+++|++++|+.+|.++++|+..++.... .....||+||+||||||+|+++++|++.+.|++.++.
T Consensus 284 D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~------~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~ 357 (434)
T PRK14901 284 DRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKP------QWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQ 357 (434)
T ss_pred cCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccc------cccccCCEEEEeCCCCcccccccCcchhhhCCHHHHH
Confidence 9999999999999999999999999999987642110 0124799999999999999999999998888999999
Q ss_pred hhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccC
Q psy17365 296 NLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQG 343 (646)
Q Consensus 296 ~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~ 343 (646)
.++.+|.+||.+|+++|||||+|||||||++|+|||+||.++|+++++
T Consensus 358 ~l~~~Q~~iL~~a~~~lkpgG~lvystcsi~~~Ene~~v~~~l~~~~~ 405 (434)
T PRK14901 358 ELAPLQAELLESLAPLLKPGGTLVYATCTLHPAENEAQIEQFLARHPD 405 (434)
T ss_pred HHHHHHHHHHHHHHHhcCCCCEEEEEeCCCChhhHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999863
No 8
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=100.00 E-value=1e-47 Score=398.01 Aligned_cols=220 Identities=33% Similarity=0.568 Sum_probs=190.9
Q ss_pred EEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccccCCCCCceeeeeccccccccchhhhhhhhhhhccccc
Q psy17365 77 FRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENAT 156 (646)
Q Consensus 77 ~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~l~~~~~~~~~~~fl~~~~~~ 156 (646)
+|||++| ++.+++++.|++.++. ..||.+.+ +|.+......+..++.| ..
T Consensus 1 ~RvN~lk-~~~~~~~~~l~~~~~~-----------------~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~~ 50 (264)
T TIGR00446 1 IRVNTLK-ISVADLLQRLENRGVT-----------------LIPWCEEG-FFEVNESPLPIGSTPEY-----------LS 50 (264)
T ss_pred CeecCCC-CCHHHHHHHHHhCCCc-----------------eeecCCCc-eEEEeCCCCCcccChhH-----------hC
Confidence 6999999 9999999998776532 12333322 23332122235666666 69
Q ss_pred ccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q psy17365 157 GHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC 236 (646)
Q Consensus 157 G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n 236 (646)
|++++||.+||+++.+|+++||++|||+|||||+||++|+++++ +.|.|+|+|+++.|++.+++|++++|+.+
T Consensus 51 G~~~~qd~~s~~~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~-------~~g~v~a~D~~~~~l~~~~~n~~~~g~~~ 123 (264)
T TIGR00446 51 GLYYIQEASSMIPPLALEPDPPERVLDMAAAPGGKTTQISALMK-------NEGAIVANEFSKSRTKVLIANINRCGVLN 123 (264)
T ss_pred CeEEEECHHHHHHHHHhCCCCcCEEEEECCCchHHHHHHHHHcC-------CCCEEEEEcCCHHHHHHHHHHHHHcCCCc
Confidence 99999999999999999999999999999999999999999875 57899999999999999999999999999
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCC
Q psy17365 237 AIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGG 316 (646)
Q Consensus 237 i~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG 316 (646)
+.+++.|+..++.. ...||+||+||||||.|+++++|++++.|+++++..++.+|.+||.+|+++|||||
T Consensus 124 v~~~~~D~~~~~~~----------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG 193 (264)
T TIGR00446 124 VAVTNFDGRVFGAA----------VPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGG 193 (264)
T ss_pred EEEecCCHHHhhhh----------ccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999998765421 13599999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCCCccccHHHHHHHHHHccC
Q psy17365 317 KIAYSTCSLNPLEDEAVIQRLIVETQG 343 (646)
Q Consensus 317 ~LVYSTCSl~p~ENE~VV~~~L~~~~~ 343 (646)
+|||||||++++|||+||+++|+++++
T Consensus 194 ~lvYstcs~~~~Ene~vv~~~l~~~~~ 220 (264)
T TIGR00446 194 VLVYSTCSLEPEENEAVVDYLLEKRPD 220 (264)
T ss_pred EEEEEeCCCChHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999875
No 9
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=100.00 E-value=9.4e-46 Score=407.62 Aligned_cols=237 Identities=27% Similarity=0.439 Sum_probs=203.6
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccccCCCCCceeeeecccccccc
Q psy17365 60 NEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRT 139 (646)
Q Consensus 60 ~e~~~f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~l~~ 139 (646)
+++++|++++++++|+++|||++| ++.+++.+.|+++++ ...+.+|+|+++. +. ....+..
T Consensus 151 ~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~---------------~~~~~~~~~~~~~--~~-~~~~~~~ 211 (426)
T TIGR00563 151 GQWQSICEANNQRPPMWLRINRTK-HSRDEWLALLAEAGM---------------KGFPHDLAPDAVR--LE-TPAAVHA 211 (426)
T ss_pred HHHHHHHHHhCCCCCeEEEEcCCc-CCHHHHHHHHHhcCC---------------ceeeCCCCCCeEE--EC-CCCCccc
Confidence 667899999999999999999999 999999888876653 2346678888653 32 1223555
Q ss_pred chhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCH
Q psy17365 140 SQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDN 219 (646)
Q Consensus 140 ~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~ 219 (646)
++.| +.|++++||.+||+++.+|++++|++|||||||||+||+++++.+ +.|.|+|+|+++
T Consensus 212 ~~~~-----------~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~--------~~~~v~a~D~~~ 272 (426)
T TIGR00563 212 LPGF-----------EEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELA--------PQAQVVALDIHE 272 (426)
T ss_pred Cchh-----------hCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHc--------CCCeEEEEeCCH
Confidence 5655 799999999999999999999999999999999999999999986 368999999999
Q ss_pred HHHHHHHHHHHHcCCCCeEE--EecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhh
Q psy17365 220 NRCYMLVHQAKRLNSPCAII--TNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNL 297 (646)
Q Consensus 220 ~Rl~~L~~n~~rlg~~ni~v--~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l 297 (646)
.|++.+++|++++|+. +.+ ..+|+..++.. .....||+||+||||||.|+++++|++.+.|++.++..+
T Consensus 273 ~~l~~~~~n~~r~g~~-~~v~~~~~d~~~~~~~--------~~~~~fD~VllDaPcSg~G~~~~~p~~~~~~~~~~~~~l 343 (426)
T TIGR00563 273 HRLKRVYENLKRLGLT-IKAETKDGDGRGPSQW--------AENEQFDRILLDAPCSATGVIRRHPDIKWLRKPRDIAEL 343 (426)
T ss_pred HHHHHHHHHHHHcCCC-eEEEEecccccccccc--------ccccccCEEEEcCCCCCCcccccCcchhhcCCHHHHHHH
Confidence 9999999999999987 445 45555433211 012579999999999999999999999888899999999
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccC
Q psy17365 298 HGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQG 343 (646)
Q Consensus 298 ~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~ 343 (646)
+.+|.+||.+|+++|||||+|||||||++|+|||+||.++|+++++
T Consensus 344 ~~lQ~~lL~~a~~~LkpgG~lvystcs~~~~Ene~~v~~~l~~~~~ 389 (426)
T TIGR00563 344 AELQSEILDAIWPLLKTGGTLVYATCSVLPEENSEQIKAFLQEHPD 389 (426)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhCHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999999999874
No 10
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=1.3e-43 Score=392.46 Aligned_cols=247 Identities=30% Similarity=0.464 Sum_probs=217.5
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccccCCCCCceeeeeccccc
Q psy17365 57 CPENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRA 136 (646)
Q Consensus 57 ~~~~e~~~f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~ 136 (646)
++++++++|++++++++|+++|||+.| .+.+++.+.|+++++ ...+.||+|+++. +. ...
T Consensus 161 ~g~~~~~~~l~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~g~---------------~~~~~~~~~~~~~--~~--~~~ 220 (444)
T PRK14902 161 YGEEKAEKILESLNEPPKASIRVNTLK-ISVEELIEKLEEEGY---------------EVEESLLSPEALV--IE--KGN 220 (444)
T ss_pred hCHHHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHHcCc---------------eeEEcCCCCCeEE--Ee--CCC
Confidence 467899999999999999999999999 899998888876642 2346789998654 32 234
Q ss_pred cccchhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEc
Q psy17365 137 IRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAND 216 (646)
Q Consensus 137 l~~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~D 216 (646)
+..++.| ..|.+++||.+|++++.++++++|++|||+|||||++|+++++.++ +.|.|+|+|
T Consensus 221 ~~~~~~~-----------~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~-------~~~~v~avD 282 (444)
T PRK14902 221 IAGTDLF-----------KDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLK-------NTGKVVALD 282 (444)
T ss_pred cccChHH-----------hCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhC-------CCCEEEEEe
Confidence 6677766 6999999999999999999999999999999999999999999874 578999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhh
Q psy17365 217 VDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNN 296 (646)
Q Consensus 217 is~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~ 296 (646)
+++.+++.+++|++++|+.++.++++|+..++... ...||+|++||||||.|+++++|++.+.|++.++..
T Consensus 283 i~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~---------~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~ 353 (444)
T PRK14902 283 IHEHKLKLIEENAKRLGLTNIETKALDARKVHEKF---------AEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIES 353 (444)
T ss_pred CCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchh---------cccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHH
Confidence 99999999999999999999999999997753211 146999999999999999999999988888999999
Q ss_pred hHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEeecc
Q psy17365 297 LHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVS 351 (646)
Q Consensus 297 l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~~~ 351 (646)
+..+|.++|..|.++|||||+|||||||++++|||+||.++|++++ .++++++.
T Consensus 354 l~~~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~vv~~~l~~~~-~~~~~~~~ 407 (444)
T PRK14902 354 LQEIQLEILESVAQYLKKGGILVYSTCTIEKEENEEVIEAFLEEHP-EFELVPLQ 407 (444)
T ss_pred HHHHHHHHHHHHHHHcCCCCEEEEEcCCCChhhhHHHHHHHHHhCC-CcEEeccc
Confidence 9999999999999999999999999999999999999999999886 47777654
No 11
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=4.6e-43 Score=386.30 Aligned_cols=242 Identities=29% Similarity=0.452 Sum_probs=208.8
Q ss_pred HHHHHHHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccccCCCCCceeeeecccccccc
Q psy17365 60 NEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRT 139 (646)
Q Consensus 60 ~e~~~f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~l~~ 139 (646)
+++++|++++++++|+++|||++| ++.+++.+.|++.++ ...+.||+|+++.+. ....+..
T Consensus 157 ~~~~~~~~~~~~~~~~~~Rvn~~k-~~~~~~~~~l~~~~~---------------~~~~~~~~~~~~~~~---~~~~~~~ 217 (427)
T PRK10901 157 EQWQAILAANNQRPPMWLRVNRRH-HSRDAYLALLAEAGI---------------EAFPHAVGPDAIRLE---TPVPVHQ 217 (427)
T ss_pred HHHHHHHHHcCCCCCeEEEEcCCC-CCHHHHHHHHHhCCC---------------ceeecCCCCCeEEEC---CCCCccc
Confidence 679999999999999999999999 999999888876543 234678999866432 1123455
Q ss_pred chhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCH
Q psy17365 140 SQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDN 219 (646)
Q Consensus 140 ~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~ 219 (646)
++.| +.|.+++||.+||+++.+|++++|++|||+|||||++|+++++.+. .+.|+|+|+++
T Consensus 218 ~~~~-----------~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~--------~~~v~a~D~s~ 278 (427)
T PRK10901 218 LPGF-----------AEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAP--------QAQVVALDIDA 278 (427)
T ss_pred Cchh-----------hCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcC--------CCEEEEEeCCH
Confidence 5555 6999999999999999999999999999999999999999999852 47999999999
Q ss_pred HHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHH
Q psy17365 220 NRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHG 299 (646)
Q Consensus 220 ~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~ 299 (646)
.+++.+++|++++|.. +.++++|+..++... ....||+|++||||||.|+++++|++.+.+++.++..+..
T Consensus 279 ~~l~~~~~n~~~~g~~-~~~~~~D~~~~~~~~--------~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~ 349 (427)
T PRK10901 279 QRLERVRENLQRLGLK-ATVIVGDARDPAQWW--------DGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAA 349 (427)
T ss_pred HHHHHHHHHHHHcCCC-eEEEEcCcccchhhc--------ccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHH
Confidence 9999999999999986 688899997653211 1246999999999999999999999977778889999999
Q ss_pred HHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEee
Q psy17365 300 IQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVD 349 (646)
Q Consensus 300 lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~ 349 (646)
+|.++|.+|.++|||||+|||||||++++|||++|.++|+++++ +++++
T Consensus 350 ~q~~iL~~a~~~LkpGG~lvystcs~~~~Ene~~v~~~l~~~~~-~~~~~ 398 (427)
T PRK10901 350 LQSEILDALWPLLKPGGTLLYATCSILPEENEQQIKAFLARHPD-AELLD 398 (427)
T ss_pred HHHHHHHHHHHhcCCCCEEEEEeCCCChhhCHHHHHHHHHhCCC-CEEec
Confidence 99999999999999999999999999999999999999999864 56544
No 12
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=100.00 E-value=5.7e-43 Score=387.44 Aligned_cols=242 Identities=24% Similarity=0.342 Sum_probs=205.3
Q ss_pred CCHHHHHHHHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccccCCCCCceeeeeccccc
Q psy17365 57 CPENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRA 136 (646)
Q Consensus 57 ~~~~e~~~f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~ 136 (646)
+++++++++++++++++|+++|||+++ .+.+++.+.|..++++ ..+.+| + ++ .+. ...
T Consensus 163 ~g~~~~~~~~~~~~~~~~~~~Rvn~~~-~~~~~~~~~l~~~~~~---------------~~~~~~-~-~~--~~~--~~~ 220 (445)
T PRK14904 163 YGEERTEAMLSYNNQAPLFGFRINRLK-TTPEKFLAAPADASVT---------------FEKSGL-P-NF--FLS--KDF 220 (445)
T ss_pred hChHHHHHHHHHhCCCCCceeEeCCCC-CCHHHHHHHHHhCCCc---------------eEEcCc-c-eE--EEe--ccc
Confidence 356788999999999999999999999 8999988887655432 112222 2 22 121 111
Q ss_pred cccchhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEc
Q psy17365 137 IRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAND 216 (646)
Q Consensus 137 l~~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~D 216 (646)
....+.| ..|.+++||++|++++.+|++++|++|||+|||||+||+++++.++ +.|.|+|+|
T Consensus 221 ~~~~~~~-----------~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~-------~~~~V~avD 282 (445)
T PRK14904 221 SLFEPFL-----------KLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQ-------NRGQITAVD 282 (445)
T ss_pred cccChHH-----------hCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhC-------CCcEEEEEE
Confidence 1112333 6999999999999999999999999999999999999999999875 468999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhh
Q psy17365 217 VDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNN 296 (646)
Q Consensus 217 is~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~ 296 (646)
+++.|++.+++|++++|+.+|.++++|+..++. ...||+|++||||||+|+++++|++.+.|+++++..
T Consensus 283 ~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~-----------~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~ 351 (445)
T PRK14904 283 RYPQKLEKIRSHASALGITIIETIEGDARSFSP-----------EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAE 351 (445)
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEeCccccccc-----------CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHH
Confidence 999999999999999999999999999977531 146999999999999999999999988889999999
Q ss_pred hHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEeec
Q psy17365 297 LHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDV 350 (646)
Q Consensus 297 l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~~ 350 (646)
+..+|.+||.+|.++|||||+|||||||++|+|||+||.++|++|++ +++++.
T Consensus 352 l~~~q~~iL~~a~~~lkpgG~lvystcs~~~~Ene~~v~~~l~~~~~-~~~~~~ 404 (445)
T PRK14904 352 LVGLQAELLDHAASLLKPGGVLVYATCSIEPEENELQIEAFLQRHPE-FSAEPS 404 (445)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEEeCCCChhhHHHHHHHHHHhCCC-CEEecc
Confidence 99999999999999999999999999999999999999999999874 666554
No 13
>KOG2360|consensus
Probab=99.97 E-value=1.5e-31 Score=280.38 Aligned_cols=290 Identities=22% Similarity=0.308 Sum_probs=216.2
Q ss_pred HHHHHHHHHHhCCCCCcEEEEcCCCccCHHHHHHHHHHhhHHhhhcccccccccccCcccccCCCCCceeeeeccccccc
Q psy17365 59 ENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIR 138 (646)
Q Consensus 59 ~~e~~~f~~al~~~lP~~~RVN~~k~~~~~~l~~~L~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~l~ 138 (646)
++..+++.-..+.++|.++||||++ ...++.+..|..+.+..+... .++ ...-.+.+++-+.+. ....|.
T Consensus 116 ~~~~~~l~~t~~~~~pr~vRINtlk-~~~~e~~~~L~~e~~~~~~~l--~p~----~~~~D~~~~~ll~~~---~~n~i~ 185 (413)
T KOG2360|consen 116 VKSLRELKLTMKIPLPRYVRINTLK-GTTDEALDYLDYEKWKMITEL--KPD----EFYVDPHVENLIIFP---PSNFIV 185 (413)
T ss_pred HHHHHHhhccCCCCCceeEEeeccc-Cchhhhhhhhhhhhhhhhhhc--CCc----ceeccccchhhcccC---CCccee
Confidence 3556666665667999999999999 888888888877665533322 000 011123333322221 112345
Q ss_pred cchhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCC
Q psy17365 139 TSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVD 218 (646)
Q Consensus 139 ~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis 218 (646)
.++.| ++|.+.+||.+|++|+.+|++.+|..|+|+|||||.||+|+|..+. +.|.++|.|.+
T Consensus 186 ~~~ly-----------~~g~~ilqd~asclpA~ll~p~~g~~v~d~caapg~KTsH~a~i~~-------n~gki~afe~d 247 (413)
T KOG2360|consen 186 EHELY-----------KNGKFILQDKASCLPAHLLDPRPGSRVIDTCAAPGNKTSHLAAIMR-------NQGKIYAFERD 247 (413)
T ss_pred ecccc-----------ccCceEEechhhcchhhhcCCCCCCceeeeccccccchhhHHHHhh-------ccCCcchhhhh
Confidence 55555 7999999999999999999999999999999999999999999986 68999999999
Q ss_pred HHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCcccc--ccCCcchhhh
Q psy17365 219 NNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIW--TKWTPSNGNN 296 (646)
Q Consensus 219 ~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~--~~w~~~~~~~ 296 (646)
.+|.+.+..+++..|..++....+|+...+.. ........||+||+|||.|+..+.-.+. ..-.+..+..
T Consensus 248 ~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~~--------~~~~~v~~iL~DpscSgSgm~~r~~~~~~~e~~~~~rL~~ 319 (413)
T KOG2360|consen 248 AKRAATLRKLLKIAGVSIVESVEGDFLNTATP--------EKFRDVTYILVDPSCSGSGMVSRQDEDPGAETESPERLEN 319 (413)
T ss_pred hHHHHHHHHHHHHcCCCccccccccccCCCCc--------ccccceeEEEeCCCCCCCccccceeeccCCCcccHHHHHH
Confidence 99999999999999999988888888763211 1124567899999999999875532221 1224678899
Q ss_pred hHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEeeccccCCCCccCCCCcccccCCCCCCCc
Q psy17365 297 LHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALKYAPGLSQWRPASKDNLDG 376 (646)
Q Consensus 297 l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~~~~~lp~l~~~~G~~~w~v~~~~~~~~ 376 (646)
|...|..++.+|+.+-+. -++||||||++.+|||.||++.|...++.+++.... .+|.. -..|+.+|
T Consensus 320 L~~fq~~~~~hal~fp~~-k~vvystcs~~reene~vv~d~l~~~p~~~~l~~kK-~~p~w-~~rg~~~~---------- 386 (413)
T KOG2360|consen 320 LQSFQIRILKHALTFPNL-KRLVYSTCSLHREENEQVVQEVLQQNPDAKRLAPKK-VLPAW-PHRGLSTF---------- 386 (413)
T ss_pred HHHHHHHHHHHHhcCCch-hheeeecchhhhhhhhHHHHHHHhhChhHhhhchhh-cchhh-hhcCCccc----------
Confidence 999999999999996665 789999999999999999999999887656655422 23311 11223333
Q ss_pred cCCcCCCcccccccccCCCCCCCCCcccccccccccccCCcCCCCCccc
Q psy17365 377 YGSFDEVPDKWKTQVRPQMFPTGDPSHHLERCSVFGLLPHQQGPRADNG 425 (646)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~fp~~~~~~~l~~c~~~Ri~Ph~~~tgG~~~ 425 (646)
+ --+.|+ |-.|-...|+|||+
T Consensus 387 --------------------~------~~e~~l--r~~p~~~~~~gffv 407 (413)
T KOG2360|consen 387 --------------------S------GAEHCL--RASPKSTLTIGFFV 407 (413)
T ss_pred --------------------c------ccccce--ecccCCCCcceEEE
Confidence 1 237899 99999999999875
No 14
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.69 E-value=2.7e-16 Score=171.98 Aligned_cols=196 Identities=15% Similarity=0.112 Sum_probs=143.9
Q ss_pred ccCCCCCceeeeeccccccccchhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHH
Q psy17365 119 LPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEM 198 (646)
Q Consensus 119 ~~~~p~~l~~~~~~~~~~l~~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~ 198 (646)
+....+|+.|.+++... .++|.+..|.........+ .+|.+|||+|||+|+.+++++.
T Consensus 183 ~~v~E~g~~f~vdl~~g------------------~ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~- 240 (396)
T PRK15128 183 LPIEEHGMKLLVDIQGG------------------HKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALM- 240 (396)
T ss_pred EEEEECCEEEEEecccc------------------cccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHHh-
Confidence 44456777777765432 2689999998776554433 4688999999999999876552
Q ss_pred hhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCC
Q psy17365 199 IHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP--CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGD 276 (646)
Q Consensus 199 l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~--ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~ 276 (646)
. +...|+++|+|+..++.+++|++.+|+. ++.++++|+..+..... .....||.|++|||+...
T Consensus 241 -~-------ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~------~~~~~fDlVilDPP~f~~ 306 (396)
T PRK15128 241 -G-------GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYR------DRGEKFDVIVMDPPKFVE 306 (396)
T ss_pred -C-------CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHH------hcCCCCCEEEECCCCCCC
Confidence 2 3568999999999999999999999985 78999999876532110 012479999999996432
Q ss_pred cccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC--CCccccHHHHHHHHHHccCcEEEeeccccC
Q psy17365 277 GTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS--LNPLEDEAVIQRLIVETQGAVQLVDVSAIT 354 (646)
Q Consensus 277 G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS--l~p~ENE~VV~~~L~~~~~~~elv~~~~~l 354 (646)
. ...+........+++..|.++|++||.|+++||| +..++-.++|.++..+.+..++++.....-
T Consensus 307 ~-------------k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~scs~~~~~~~f~~~v~~aa~~~~~~~~~l~~~~~~ 373 (396)
T PRK15128 307 N-------------KSQLMGACRGYKDINMLAIQLLNPGGILLTFSCSGLMTSDLFQKIIADAAIDAGRDVQFIEQFRQA 373 (396)
T ss_pred C-------------hHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeCCCcCCHHHHHHHHHHHHHHcCCeEEEEEEcCCC
Confidence 2 1122233344668889999999999999999999 777777888888888887788888776555
Q ss_pred CCCccCCCC
Q psy17365 355 PALKYAPGL 363 (646)
Q Consensus 355 p~l~~~~G~ 363 (646)
|+++..+++
T Consensus 374 ~DhP~~~~~ 382 (396)
T PRK15128 374 ADHPVIATY 382 (396)
T ss_pred CCCCCCCCC
Confidence 555444433
No 15
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.60 E-value=6.4e-15 Score=159.72 Aligned_cols=178 Identities=16% Similarity=0.115 Sum_probs=135.0
Q ss_pred ccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q psy17365 155 ATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS 234 (646)
Q Consensus 155 ~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~ 234 (646)
++|.|..|..+...+...+ .|.+|||+||-+|+.|.++|.. +...|+++|+|...++.+++|++-+|+
T Consensus 198 kTGfFlDqR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~g---------GA~~vt~VD~S~~al~~a~~N~~LNg~ 265 (393)
T COG1092 198 KTGFFLDQRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALG---------GASEVTSVDLSKRALEWARENAELNGL 265 (393)
T ss_pred cceeeHHhHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhc---------CCCceEEEeccHHHHHHHHHHHHhcCC
Confidence 7999999998876554443 3999999999999999998753 567999999999999999999999997
Q ss_pred C--CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhh
Q psy17365 235 P--CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEML 312 (646)
Q Consensus 235 ~--ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lL 312 (646)
. .+.++++|+..+..... ....+||+|++||| ++.+++ .......+-..+|+..|+++|
T Consensus 266 ~~~~~~~i~~Dvf~~l~~~~------~~g~~fDlIilDPP-----sF~r~k--------~~~~~~~rdy~~l~~~~~~iL 326 (393)
T COG1092 266 DGDRHRFIVGDVFKWLRKAE------RRGEKFDLIILDPP-----SFARSK--------KQEFSAQRDYKDLNDLALRLL 326 (393)
T ss_pred CccceeeehhhHHHHHHHHH------hcCCcccEEEECCc-----ccccCc--------ccchhHHHHHHHHHHHHHHHc
Confidence 5 37899999987654322 22358999999999 222333 333556677789999999999
Q ss_pred ccCCeEEEEcCCCCcccc--HHHHHHHHHHccCcEEEeeccccCCCCccCCCC
Q psy17365 313 AVGGKIAYSTCSLNPLED--EAVIQRLIVETQGAVQLVDVSAITPALKYAPGL 363 (646)
Q Consensus 313 KpGG~LVYSTCSl~p~EN--E~VV~~~L~~~~~~~elv~~~~~lp~l~~~~G~ 363 (646)
+|||+++.||||-+-..+ ..+|...+...+..++++......|++...+++
T Consensus 327 ~pgG~l~~~s~~~~~~~~~f~~~i~~a~~~~~~~~~~~~~~~~~~D~p~~~~~ 379 (393)
T COG1092 327 APGGTLVTSSCSRHFSSDLFLEIIARAAAAAGRRAQEIEGEGQPPDHPRNAQI 379 (393)
T ss_pred CCCCEEEEEecCCccCHHHHHHHHHHHHHhcCCcEEEeeccCCCCCccccccC
Confidence 999999999999555444 466666666666567777655455555444433
No 16
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.55 E-value=5.8e-14 Score=136.90 Aligned_cols=136 Identities=22% Similarity=0.261 Sum_probs=112.3
Q ss_pred cccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCC
Q psy17365 167 MIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASV 246 (646)
Q Consensus 167 ml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~ 246 (646)
.+....|.++||++++|++||+|+.|..+| +++ +.|+|+|+|.++++++.+++|++++|++|+.++.+||..
T Consensus 24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~-------p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~ 95 (187)
T COG2242 24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAG-------PSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPE 95 (187)
T ss_pred HHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhC-------CCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchH
Confidence 355567899999999999999999999999 554 799999999999999999999999999999999999965
Q ss_pred CccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCC
Q psy17365 247 MPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLN 326 (646)
Q Consensus 247 ~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~ 326 (646)
... ....||+|++. |.|. ...||+.++..||+||+||-..-++
T Consensus 96 ~L~----------~~~~~daiFIG----Gg~~----------------------i~~ile~~~~~l~~ggrlV~naitl- 138 (187)
T COG2242 96 ALP----------DLPSPDAIFIG----GGGN----------------------IEEILEAAWERLKPGGRLVANAITL- 138 (187)
T ss_pred hhc----------CCCCCCEEEEC----CCCC----------------------HHHHHHHHHHHcCcCCeEEEEeecH-
Confidence 432 11269999984 2221 1368999999999999999765555
Q ss_pred ccccHHHHHHHHHHccCcEEEeec
Q psy17365 327 PLEDEAVIQRLIVETQGAVQLVDV 350 (646)
Q Consensus 327 p~ENE~VV~~~L~~~~~~~elv~~ 350 (646)
||++...+.+++.+.. +++.+
T Consensus 139 --E~~~~a~~~~~~~g~~-ei~~v 159 (187)
T COG2242 139 --ETLAKALEALEQLGGR-EIVQV 159 (187)
T ss_pred --HHHHHHHHHHHHcCCc-eEEEE
Confidence 9999999999999873 44443
No 17
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.48 E-value=4.3e-14 Score=147.91 Aligned_cols=177 Identities=16% Similarity=0.178 Sum_probs=118.8
Q ss_pred cccCCCCCceeeeeccccccccchhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHH
Q psy17365 118 CLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIE 197 (646)
Q Consensus 118 ~~~~~p~~l~~~~~~~~~~l~~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae 197 (646)
......+|+.|.+++...+ ++|+|..|.......... -.|.+|||+||.+||.|++++.
T Consensus 85 ~~~v~E~gl~f~v~l~~gq------------------ktGlFlDqR~nR~~v~~~---~~gkrvLnlFsYTGgfsv~Aa~ 143 (286)
T PF10672_consen 85 FFTVEENGLKFRVDLTDGQ------------------KTGLFLDQRENRKWVRKY---AKGKRVLNLFSYTGGFSVAAAA 143 (286)
T ss_dssp EEEEEETTEEEEEESSSSS------------------STSS-GGGHHHHHHHHHH---CTTCEEEEET-TTTHHHHHHHH
T ss_pred ceEEEECCEEEEEEcCCCC------------------cceEcHHHHhhHHHHHHH---cCCCceEEecCCCCHHHHHHHH
Confidence 3344567888887764322 789999999988665443 3588999999999999998764
Q ss_pred HhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCC
Q psy17365 198 MIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP--CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTG 275 (646)
Q Consensus 198 ~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~--ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG 275 (646)
. +...|+++|.|...++.+++|++.+|+. .+.++.+|+..+.... ....+||.|++|||.-.
T Consensus 144 g---------GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~-------~~~~~fD~IIlDPPsF~ 207 (286)
T PF10672_consen 144 G---------GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRL-------KKGGRFDLIILDPPSFA 207 (286)
T ss_dssp T---------TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHH-------HHTT-EEEEEE--SSEE
T ss_pred C---------CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHH-------hcCCCCCEEEECCCCCC
Confidence 2 4668999999999999999999999864 6889999987643211 11358999999999443
Q ss_pred CcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEee
Q psy17365 276 DGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVD 349 (646)
Q Consensus 276 ~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~ 349 (646)
-| + ..+.+-..+|+..|+++|+|||.|+.+|||-+-..+. ..+.+.+...++++++
T Consensus 208 k~----------~------~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~~i~~~~--l~~~~~~~a~~~~~~~ 263 (286)
T PF10672_consen 208 KS----------K------FDLERDYKKLLRRAMKLLKPGGLLLTCSCSHHISPDF--LLEAVAEAAREVEFIE 263 (286)
T ss_dssp SS----------T------CEHHHHHHHHHHHHHHTEEEEEEEEEEE--TTS-HHH--HHHHHHHHHHHCEEEE
T ss_pred CC----------H------HHHHHHHHHHHHHHHHhcCCCCEEEEEcCCcccCHHH--HHHHHHHhCccceEee
Confidence 22 1 1234567789999999999999999999996655542 2233333323455554
No 18
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.46 E-value=4.3e-13 Score=156.92 Aligned_cols=168 Identities=11% Similarity=0.111 Sum_probs=122.7
Q ss_pred ccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q psy17365 155 ATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS 234 (646)
Q Consensus 155 ~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~ 234 (646)
++|.+..|.....+...+ .+|.+|||+|||+|+.+++++.. +...|+++|+|+..++.+++|++.+|+
T Consensus 519 ~tG~flDqr~~R~~~~~~---~~g~rVLDlf~gtG~~sl~aa~~---------Ga~~V~~vD~s~~al~~a~~N~~~ng~ 586 (702)
T PRK11783 519 DTGLFLDHRPTRRMIGQM---AKGKDFLNLFAYTGTASVHAALG---------GAKSTTTVDMSNTYLEWAERNFALNGL 586 (702)
T ss_pred cceECHHHHHHHHHHHHh---cCCCeEEEcCCCCCHHHHHHHHC---------CCCEEEEEeCCHHHHHHHHHHHHHhCC
Confidence 578887787665444332 35889999999999999998863 355799999999999999999999998
Q ss_pred C--CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhh
Q psy17365 235 P--CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEML 312 (646)
Q Consensus 235 ~--ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lL 312 (646)
. ++.++++|+..+.... ...||.|++|||+.+.+. . ..........+.+++..+.++|
T Consensus 587 ~~~~v~~i~~D~~~~l~~~---------~~~fDlIilDPP~f~~~~---~--------~~~~~~~~~~y~~l~~~a~~lL 646 (702)
T PRK11783 587 SGRQHRLIQADCLAWLKEA---------REQFDLIFIDPPTFSNSK---R--------MEDSFDVQRDHVALIKDAKRLL 646 (702)
T ss_pred CccceEEEEccHHHHHHHc---------CCCcCEEEECCCCCCCCC---c--------cchhhhHHHHHHHHHHHHHHHc
Confidence 5 6899999986643210 247999999999876431 1 0112233455778999999999
Q ss_pred ccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEeeccccCCCCc
Q psy17365 313 AVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALK 358 (646)
Q Consensus 313 KpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~~~~~lp~l~ 358 (646)
+|||.|++++|+-.-..+ .+++.+.+..++++.....-++++
T Consensus 647 ~~gG~l~~~~~~~~~~~~----~~~~~~~g~~~~~i~~~~~~~Dhp 688 (702)
T PRK11783 647 RPGGTLYFSNNKRGFKMD----EEGLAKLGLKAEEITAKTLPPDFA 688 (702)
T ss_pred CCCCEEEEEeCCccCChh----HHHHHhCCCeEEEEecCCCCCCCC
Confidence 999999999998655544 455566665667666544444443
No 19
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.46 E-value=6.8e-13 Score=131.94 Aligned_cols=151 Identities=17% Similarity=0.228 Sum_probs=113.3
Q ss_pred cccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-C
Q psy17365 156 TGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-S 234 (646)
Q Consensus 156 ~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~ 234 (646)
.+.++.++... +....+++.++++|||+|||+|..+.+++..+. +.+.|+|+|+++.+++.+++|++.+| .
T Consensus 20 ~~~~t~~~~r~-~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~-------~~~~v~avD~~~~~~~~a~~n~~~~g~~ 91 (198)
T PRK00377 20 EIPMTKEEIRA-LALSKLRLRKGDMILDIGCGTGSVTVEASLLVG-------ETGKVYAVDKDEKAINLTRRNAEKFGVL 91 (198)
T ss_pred CCCCCHHHHHH-HHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHHHHhCCC
Confidence 34444444433 333456889999999999999999999988764 46799999999999999999999999 4
Q ss_pred CCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhcc
Q psy17365 235 PCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAV 314 (646)
Q Consensus 235 ~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKp 314 (646)
.++.++++|+..+.... ...||+|+++.. . .+ ...++..+.++|||
T Consensus 92 ~~v~~~~~d~~~~l~~~---------~~~~D~V~~~~~---~------~~----------------~~~~l~~~~~~Lkp 137 (198)
T PRK00377 92 NNIVLIKGEAPEILFTI---------NEKFDRIFIGGG---S------EK----------------LKEIISASWEIIKK 137 (198)
T ss_pred CCeEEEEechhhhHhhc---------CCCCCEEEECCC---c------cc----------------HHHHHHHHHHHcCC
Confidence 78889999986542110 146999998531 0 01 13679999999999
Q ss_pred CCeEEEEcCCCCccccHHHHHHHHHHccCcEEEeecc
Q psy17365 315 GGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVS 351 (646)
Q Consensus 315 GG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~~~ 351 (646)
||++|+.+|++ ++...+...|++++-.++++.+.
T Consensus 138 gG~lv~~~~~~---~~~~~~~~~l~~~g~~~~~~~~~ 171 (198)
T PRK00377 138 GGRIVIDAILL---ETVNNALSALENIGFNLEITEVI 171 (198)
T ss_pred CcEEEEEeecH---HHHHHHHHHHHHcCCCeEEEEEe
Confidence 99999988876 66677777888776555665543
No 20
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.40 E-value=4.2e-12 Score=124.02 Aligned_cols=155 Identities=18% Similarity=0.144 Sum_probs=110.4
Q ss_pred cccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCC
Q psy17365 167 MIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASV 246 (646)
Q Consensus 167 ml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~ 246 (646)
++....++..++.+|||+|||+|..+..++.. .. .|+++|+++..++.+++|++..+. ++.+.+.|+..
T Consensus 9 ~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~---------~~-~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~ 77 (179)
T TIGR00537 9 LLLEANLRELKPDDVLEIGAGTGLVAIRLKGK---------GK-CILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFK 77 (179)
T ss_pred HHHHHHHHhcCCCeEEEeCCChhHHHHHHHhc---------CC-EEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccc
Confidence 34444455667789999999999999988764 12 899999999999999999998876 57888888754
Q ss_pred CccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCC
Q psy17365 247 MPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLN 326 (646)
Q Consensus 247 ~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~ 326 (646)
.+ ...||.|++++|+.....-.+ .+-+..+...........+.++|.++.++|||||++++.+++.
T Consensus 78 ~~------------~~~fD~Vi~n~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~- 143 (179)
T TIGR00537 78 GV------------RGKFDVILFNPPYLPLEDDLR-RGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSL- 143 (179)
T ss_pred cc------------CCcccEEEECCCCCCCcchhc-ccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEecc-
Confidence 32 137999999999854332111 1111122212222334567889999999999999999988776
Q ss_pred ccccHHHHHHHHHHccCcEEEe
Q psy17365 327 PLEDEAVIQRLIVETQGAVQLV 348 (646)
Q Consensus 327 p~ENE~VV~~~L~~~~~~~elv 348 (646)
.++..+...|++.+-..+.+
T Consensus 144 --~~~~~~~~~l~~~gf~~~~~ 163 (179)
T TIGR00537 144 --NGEPDTFDKLDERGFRYEIV 163 (179)
T ss_pred --CChHHHHHHHHhCCCeEEEE
Confidence 35677788888876444433
No 21
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.36 E-value=1.8e-12 Score=116.91 Aligned_cols=116 Identities=19% Similarity=0.226 Sum_probs=89.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
|.+|||+|||+|..+..+++.. ...++++|+++..++++++++.+.+. .++.++++|+..+....
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~---------~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~----- 66 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRG---------AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL----- 66 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHC---------TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----
T ss_pred CCEEEEcCcchHHHHHHHHHHC---------CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----
Confidence 6799999999999999888762 46899999999999999999999987 57999999987764211
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
...+||.|++|||+........ ....+...+++++.++|+|||.+++.+|.
T Consensus 67 ---~~~~~D~Iv~npP~~~~~~~~~--------------~~~~~~~~~~~~~~~~L~~gG~~~~~~~~ 117 (117)
T PF13659_consen 67 ---PDGKFDLIVTNPPYGPRSGDKA--------------ALRRLYSRFLEAAARLLKPGGVLVFITPA 117 (117)
T ss_dssp ---TTT-EEEEEE--STTSBTT------------------GGCHHHHHHHHHHHHEEEEEEEEEEEEG
T ss_pred ---cCceeEEEEECCCCccccccch--------------hhHHHHHHHHHHHHHHcCCCeEEEEEeCC
Confidence 1367999999999875422111 11115568999999999999999999874
No 22
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.36 E-value=8.8e-12 Score=128.80 Aligned_cols=144 Identities=13% Similarity=0.157 Sum_probs=105.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
++.+|||+|||+|..+..++... +...|+|+|+|+..++.+++|+++++ +.++++|+.......
T Consensus 86 ~~~~vLDlg~GsG~i~l~la~~~--------~~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~~----- 149 (251)
T TIGR03704 86 GTLVVVDLCCGSGAVGAALAAAL--------DGIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPTA----- 149 (251)
T ss_pred CCCEEEEecCchHHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcchh-----
Confidence 34589999999999999998764 34589999999999999999999877 367788875432100
Q ss_pred CCCCCCCCCeeecCCCCCCCccccc-CccccccCC---cchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHH
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRK-NPDIWTKWT---PSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEA 332 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk-~pd~~~~w~---~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~ 332 (646)
....||.|++||||...+.+.. .|+....+. ..........+.+++..|.++|+|||++++.+.. ++..
T Consensus 150 ---~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~~~----~~~~ 222 (251)
T TIGR03704 150 ---LRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVETSE----RQAP 222 (251)
T ss_pred ---cCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEECc----chHH
Confidence 0146999999999999887765 344422111 1122345677899999999999999999988653 2334
Q ss_pred HHHHHHHHccC
Q psy17365 333 VIQRLIVETQG 343 (646)
Q Consensus 333 VV~~~L~~~~~ 343 (646)
-|..+|++++-
T Consensus 223 ~v~~~l~~~g~ 233 (251)
T TIGR03704 223 LAVEAFARAGL 233 (251)
T ss_pred HHHHHHHHCCC
Confidence 46667777653
No 23
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.36 E-value=6.5e-12 Score=134.59 Aligned_cols=131 Identities=22% Similarity=0.207 Sum_probs=102.8
Q ss_pred ccccccccc------ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q psy17365 163 EAVSMIPPL------LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC 236 (646)
Q Consensus 163 d~~Sml~~~------~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n 236 (646)
.+++|-|.+ ++++++|+.|||.|||+|+.+..++.. ...|+|+|+++..+..++.|+++.|..+
T Consensus 162 ~~~~l~~~la~~~~~l~~~~~g~~vLDp~cGtG~~lieaa~~----------~~~v~g~Di~~~~~~~a~~nl~~~g~~~ 231 (329)
T TIGR01177 162 KPGSMDPKLARAMVNLARVTEGDRVLDPFCGTGGFLIEAGLM----------GAKVIGCDIDWKMVAGARINLEHYGIED 231 (329)
T ss_pred CCCCCCHHHHHHHHHHhCCCCcCEEEECCCCCCHHHHHHHHh----------CCeEEEEcCCHHHHHHHHHHHHHhCCCC
Confidence 455554433 356889999999999999998775532 4589999999999999999999999988
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCC
Q psy17365 237 AIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGG 316 (646)
Q Consensus 237 i~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG 316 (646)
+.+.++|+..++.. ...||.|++||||....... ...+..++.++|..+.+.|||||
T Consensus 232 i~~~~~D~~~l~~~----------~~~~D~Iv~dPPyg~~~~~~-------------~~~~~~l~~~~l~~~~r~Lk~gG 288 (329)
T TIGR01177 232 FFVKRGDATKLPLS----------SESVDAIATDPPYGRSTTAA-------------GDGLESLYERSLEEFHEVLKSEG 288 (329)
T ss_pred CeEEecchhcCCcc----------cCCCCEEEECCCCcCccccc-------------CCchHHHHHHHHHHHHHHccCCc
Confidence 88999999876531 24799999999985432110 12344677899999999999999
Q ss_pred eEEEEcCCCC
Q psy17365 317 KIAYSTCSLN 326 (646)
Q Consensus 317 ~LVYSTCSl~ 326 (646)
+++|.+++-.
T Consensus 289 ~lv~~~~~~~ 298 (329)
T TIGR01177 289 WIVYAVPTRI 298 (329)
T ss_pred EEEEEEcCCC
Confidence 9999987753
No 24
>PRK14967 putative methyltransferase; Provisional
Probab=99.35 E-value=1.3e-11 Score=124.92 Aligned_cols=146 Identities=18% Similarity=0.232 Sum_probs=101.6
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
.+.++++|||+|||+|..+..++.. +.+.|+++|+++.+++.+++|+++.+. ++.++++|+....
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~---------~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~~~~d~~~~~----- 97 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAA---------GAGSVTAVDISRRAVRSARLNALLAGV-DVDVRRGDWARAV----- 97 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHc---------CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEEEECchhhhc-----
Confidence 4678899999999999999888754 246899999999999999999998887 5778888875421
Q ss_pred CCCCCCCCCCCCeeecCCCCC---CCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcccc
Q psy17365 254 DADGNKVPMKFDRVLCDVPCT---GDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCS---G~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~EN 330 (646)
....||.|++|+|.. ..+...+.|+. .|.. .......+..++..+.++||+||++++.+.+++ +
T Consensus 98 ------~~~~fD~Vi~npPy~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~~~~~---~ 164 (223)
T PRK14967 98 ------EFRPFDVVVSNPPYVPAPPDAPPSRGPAR--AWDA--GPDGRAVLDRLCDAAPALLAPGGSLLLVQSELS---G 164 (223)
T ss_pred ------cCCCeeEEEECCCCCCCCcccccccChhH--hhhC--CCcHHHHHHHHHHHHHHhcCCCcEEEEEEeccc---C
Confidence 124799999998743 33333333333 2321 112234567899999999999999997554443 2
Q ss_pred HHHHHHHHHHccCcEEE
Q psy17365 331 EAVIQRLIVETQGAVQL 347 (646)
Q Consensus 331 E~VV~~~L~~~~~~~el 347 (646)
-..+...+++.+-.++.
T Consensus 165 ~~~~~~~l~~~g~~~~~ 181 (223)
T PRK14967 165 VERTLTRLSEAGLDAEV 181 (223)
T ss_pred HHHHHHHHHHCCCCeEE
Confidence 22344556665533333
No 25
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.34 E-value=1.1e-11 Score=110.60 Aligned_cols=111 Identities=23% Similarity=0.289 Sum_probs=85.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-SPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
||.+|||+|||+|..+..+++.. +...|+|+|+|+..++.+++++...+ ..++.+++.|+ ....
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~--------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~------ 65 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLF--------PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP------ 65 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHH--------TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcC--------CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc------
Confidence 68899999999999999999854 47789999999999999999996555 47899999998 2111
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
.....||.|+++. .+... .... ..+.++|+++.++|+|||+||.+||
T Consensus 66 ---~~~~~~D~v~~~~-~~~~~----------------~~~~-~~~~~~l~~~~~~L~pgG~lvi~~~ 112 (112)
T PF12847_consen 66 ---DFLEPFDLVICSG-FTLHF----------------LLPL-DERRRVLERIRRLLKPGGRLVINTC 112 (112)
T ss_dssp ---TTSSCEEEEEECS-GSGGG----------------CCHH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred ---ccCCCCCEEEECC-Ccccc----------------ccch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence 1124699999864 11110 1111 4566889999999999999999998
No 26
>PTZ00146 fibrillarin; Provisional
Probab=99.32 E-value=2.2e-11 Score=127.39 Aligned_cols=108 Identities=25% Similarity=0.353 Sum_probs=80.7
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+.++||++|||+|||||.+|.++|+.+. ++|.|+|+|+++..++.|...++.. +||.++..|+.......
T Consensus 128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG-------~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~y~- 197 (293)
T PTZ00146 128 IPIKPGSKVLYLGAASGTTVSHVSDLVG-------PEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQKYR- 197 (293)
T ss_pred eccCCCCEEEEeCCcCCHHHHHHHHHhC-------CCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhhhh-
Confidence 5679999999999999999999999985 5899999999977665565555432 68888999986421111
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHH-HHHHHHHhhccCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYR-IVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~-IL~~A~~lLKpGG~LVYS 321 (646)
.....||+|++|+. .|+ |.+ ++.+|.++|||||+++.+
T Consensus 198 ------~~~~~vDvV~~Dva---------~pd----------------q~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 198 ------MLVPMVDVIFADVA---------QPD----------------QARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred ------cccCCCCEEEEeCC---------Ccc----------------hHHHHHHHHHHhccCCCEEEEE
Confidence 01246999999984 132 233 345788899999999874
No 27
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.30 E-value=9.8e-12 Score=120.82 Aligned_cols=123 Identities=17% Similarity=0.200 Sum_probs=93.2
Q ss_pred cccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEec
Q psy17365 163 EAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNH 242 (646)
Q Consensus 163 d~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~ 242 (646)
|.+|.+....+...++.+|||+|||+|..+..++... +...|+|+|+++..++.++.|+++++..++.+...
T Consensus 17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~--------~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~ 88 (170)
T PF05175_consen 17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG--------PDAKVTAVDINPDALELAKRNAERNGLENVEVVQS 88 (170)
T ss_dssp HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS--------TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEES
T ss_pred CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC--------CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccc
Confidence 4455455555555578899999999999999998763 46689999999999999999999999988889998
Q ss_pred CCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 243 DASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 243 Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
|...... ..+||.|+++||....+ ......+.+++..|.++|||||.|+..
T Consensus 89 d~~~~~~-----------~~~fD~Iv~NPP~~~~~-----------------~~~~~~~~~~i~~a~~~Lk~~G~l~lv 139 (170)
T PF05175_consen 89 DLFEALP-----------DGKFDLIVSNPPFHAGG-----------------DDGLDLLRDFIEQARRYLKPGGRLFLV 139 (170)
T ss_dssp STTTTCC-----------TTCEEEEEE---SBTTS-----------------HCHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred ccccccc-----------ccceeEEEEccchhccc-----------------ccchhhHHHHHHHHHHhccCCCEEEEE
Confidence 8754321 26899999999932211 122346678999999999999988543
No 28
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.30 E-value=1.8e-10 Score=119.50 Aligned_cols=145 Identities=16% Similarity=0.219 Sum_probs=105.8
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
...++.+|||+|||+|..+..++..+ +...|+|+|+++..++.+++|++.....++.+++.|+.....
T Consensus 105 ~~~~~~~vLDiG~GsG~~~~~la~~~--------~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~~---- 172 (275)
T PRK09328 105 LLKEPLRVLDLGTGSGAIALALAKER--------PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPLP---- 172 (275)
T ss_pred cccCCCEEEEEcCcHHHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcCC----
Confidence 44577899999999999999998875 467999999999999999999984445678899988743210
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCccccc-CccccccCCcch----hhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcc
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRK-NPDIWTKWTPSN----GNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPL 328 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk-~pd~~~~w~~~~----~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ 328 (646)
...||.|++||||...+.+.. .+++ ..+.+.. .......+..++..+.++|+|||++++.+ +..
T Consensus 173 -------~~~fD~Iv~npPy~~~~~~~~~~~~v-~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e~-g~~-- 241 (275)
T PRK09328 173 -------GGRFDLIVSNPPYIPEADIHLLQPEV-RDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLEI-GYD-- 241 (275)
T ss_pred -------CCceeEEEECCCcCCcchhhhCCchh-hhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEEE-Cch--
Confidence 247999999999998876542 2222 1122221 22345677899999999999999999753 322
Q ss_pred ccHHHHHHHHHHcc
Q psy17365 329 EDEAVIQRLIVETQ 342 (646)
Q Consensus 329 ENE~VV~~~L~~~~ 342 (646)
..+.+..++.+.+
T Consensus 242 -~~~~~~~~l~~~g 254 (275)
T PRK09328 242 -QGEAVRALLAAAG 254 (275)
T ss_pred -HHHHHHHHHHhCC
Confidence 2334666777654
No 29
>PRK04266 fibrillarin; Provisional
Probab=99.30 E-value=3.4e-11 Score=122.59 Aligned_cols=136 Identities=21% Similarity=0.223 Sum_probs=94.8
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
++++||++|||+|||+|..|.++++.+ +.|.|+|+|+++.+++.+.++++.. .|+.++.+|+.......
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v--------~~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~~~~~- 136 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIV--------EEGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKPERYA- 136 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhc--------CCCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCcchhh-
Confidence 788999999999999999999999876 3689999999999999888877653 68888999986521000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc------CCCC
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST------CSLN 326 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST------CSl~ 326 (646)
.....||.|++|.+ +|+. ...+|..+.++|||||++|.+. +...
T Consensus 137 ------~l~~~~D~i~~d~~---------~p~~---------------~~~~L~~~~r~LKpGG~lvI~v~~~~~d~~~~ 186 (226)
T PRK04266 137 ------HVVEKVDVIYQDVA---------QPNQ---------------AEIAIDNAEFFLKDGGYLLLAIKARSIDVTKD 186 (226)
T ss_pred ------hccccCCEEEECCC---------ChhH---------------HHHHHHHHHHhcCCCcEEEEEEecccccCcCC
Confidence 01245999998865 1221 1245789999999999999742 2222
Q ss_pred ccccHHHHHHHHHHccCcEEEeecc
Q psy17365 327 PLEDEAVIQRLIVETQGAVQLVDVS 351 (646)
Q Consensus 327 p~ENE~VV~~~L~~~~~~~elv~~~ 351 (646)
+.+--......|+..+ |+++...
T Consensus 187 ~~~~~~~~~~~l~~aG--F~~i~~~ 209 (226)
T PRK04266 187 PKEIFKEEIRKLEEGG--FEILEVV 209 (226)
T ss_pred HHHHHHHHHHHHHHcC--CeEEEEE
Confidence 2211112335666654 6666544
No 30
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.30 E-value=6.3e-11 Score=124.61 Aligned_cols=142 Identities=14% Similarity=0.207 Sum_probs=105.6
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~~ 254 (646)
.++.+|||+|||+|..+..++... +...|+|+|+|+..++.+++|++++|+. ++.++++|+....
T Consensus 120 ~~~~~vLDlG~GsG~i~~~la~~~--------~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~------ 185 (284)
T TIGR03533 120 EPVKRILDLCTGSGCIAIACAYAF--------PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL------ 185 (284)
T ss_pred CCCCEEEEEeCchhHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc------
Confidence 456789999999999999998764 4679999999999999999999999985 6889999975321
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchh----hhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcccc
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNG----NNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~----~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~EN 330 (646)
....||.|++|||+...+.+...+..+ .+.+..+ ......+..++..+.++|+|||+|+.-+. . .
T Consensus 186 -----~~~~fD~Iv~NPPy~~~~~~~~l~~~~-~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~g---~--~ 254 (284)
T TIGR03533 186 -----PGRKYDLIVSNPPYVDAEDMADLPAEY-HHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEVG---N--S 254 (284)
T ss_pred -----CCCCccEEEECCCCCCccchhhCCHhh-hcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEEC---c--C
Confidence 013699999999998877654433322 2223221 23346778999999999999999986543 2 2
Q ss_pred HHHHHHHHHHcc
Q psy17365 331 EAVIQRLIVETQ 342 (646)
Q Consensus 331 E~VV~~~L~~~~ 342 (646)
.+.|..++.+++
T Consensus 255 ~~~v~~~~~~~~ 266 (284)
T TIGR03533 255 MEALEEAYPDVP 266 (284)
T ss_pred HHHHHHHHHhCC
Confidence 235666776654
No 31
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.29 E-value=2.7e-11 Score=120.14 Aligned_cols=148 Identities=18% Similarity=0.203 Sum_probs=108.9
Q ss_pred ccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q psy17365 157 GHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC 236 (646)
Q Consensus 157 G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n 236 (646)
|.-..|...+++....++++++++|||+|||+|..|..++... +.+.|+|+|+++.+++.+++|+++++..+
T Consensus 20 ~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~--------~~~~V~~vD~s~~~~~~a~~n~~~~~~~~ 91 (196)
T PRK07402 20 GIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC--------PKGRVIAIERDEEVVNLIRRNCDRFGVKN 91 (196)
T ss_pred CCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC--------CCCEEEEEeCCHHHHHHHHHHHHHhCCCC
Confidence 4445567777766777888999999999999999999988653 46899999999999999999999999989
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCC
Q psy17365 237 AIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGG 316 (646)
Q Consensus 237 i~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG 316 (646)
+.++++|+...... ....+|.|.+|.. . + ...++..+.++|+|||
T Consensus 92 v~~~~~d~~~~~~~---------~~~~~d~v~~~~~----~------~----------------~~~~l~~~~~~LkpgG 136 (196)
T PRK07402 92 VEVIEGSAPECLAQ---------LAPAPDRVCIEGG----R------P----------------IKEILQAVWQYLKPGG 136 (196)
T ss_pred eEEEECchHHHHhh---------CCCCCCEEEEECC----c------C----------------HHHHHHHHHHhcCCCe
Confidence 99999998542110 0124677776531 0 0 1367899999999999
Q ss_pred eEEEEcCCCCccccHHHHHHHHHHccC-cEEEeec
Q psy17365 317 KIAYSTCSLNPLEDEAVIQRLIVETQG-AVQLVDV 350 (646)
Q Consensus 317 ~LVYSTCSl~p~ENE~VV~~~L~~~~~-~~elv~~ 350 (646)
++++.++++ +.-..+.+.+++... .++.+.+
T Consensus 137 ~li~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 168 (196)
T PRK07402 137 RLVATASSL---EGLYAISEGLAQLQARNIEVVQA 168 (196)
T ss_pred EEEEEeecH---HHHHHHHHHHHhcCCCCceEEEE
Confidence 999988764 444445666665432 3455544
No 32
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.28 E-value=7e-11 Score=120.60 Aligned_cols=143 Identities=17% Similarity=0.181 Sum_probs=104.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+|||+|||+|..+..++... +...|+++|+++..++.++.+++..+..++.+.++|+....
T Consensus 87 ~~~~ilDig~G~G~~~~~l~~~~--------~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~-------- 150 (251)
T TIGR03534 87 GPLRVLDLGTGSGAIALALAKER--------PDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL-------- 150 (251)
T ss_pred CCCeEEEEeCcHhHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC--------
Confidence 34589999999999999998764 45689999999999999999999999988999999985421
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcch----hhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHH
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSN----GNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEA 332 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~----~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~ 332 (646)
....||.|++|||+...+.+.........|.+.. ..........++..+.++|+|||.+++. ++. ...+
T Consensus 151 ---~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~-~~~---~~~~ 223 (251)
T TIGR03534 151 ---PGGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLE-IGY---DQGE 223 (251)
T ss_pred ---cCCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEE-ECc---cHHH
Confidence 1257999999999998776543222212222211 1122344468999999999999999986 333 3345
Q ss_pred HHHHHHHHcc
Q psy17365 333 VIQRLIVETQ 342 (646)
Q Consensus 333 VV~~~L~~~~ 342 (646)
-+.++|.+++
T Consensus 224 ~~~~~l~~~g 233 (251)
T TIGR03534 224 AVRALFEAAG 233 (251)
T ss_pred HHHHHHHhCC
Confidence 5667777765
No 33
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.27 E-value=1.3e-11 Score=126.79 Aligned_cols=142 Identities=20% Similarity=0.297 Sum_probs=99.7
Q ss_pred cccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q psy17365 154 NATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN 233 (646)
Q Consensus 154 ~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg 233 (646)
+.+..+|.-|.+- ....|++.||++||+.++|+|+.|..||..++ +.|.|+..|++.+|++.+++|++++|
T Consensus 19 rrtQIiYpkD~~~--I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~-------p~G~v~t~E~~~~~~~~A~~n~~~~g 89 (247)
T PF08704_consen 19 RRTQIIYPKDISY--ILMRLDIRPGSRVLEAGTGSGSLTHALARAVG-------PTGHVYTYEFREDRAEKARKNFERHG 89 (247)
T ss_dssp SSS----HHHHHH--HHHHTT--TT-EEEEE--TTSHHHHHHHHHHT-------TTSEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CCcceeeCchHHH--HHHHcCCCCCCEEEEecCCcHHHHHHHHHHhC-------CCeEEEccccCHHHHHHHHHHHHHcC
Confidence 3455566666553 34578999999999999999999999999986 79999999999999999999999999
Q ss_pred CC-CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhh
Q psy17365 234 SP-CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEML 312 (646)
Q Consensus 234 ~~-ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lL 312 (646)
.. +|.+.+.|...-.. . . .....||.|++|.| +|. ..|.++.+.|
T Consensus 90 l~~~v~~~~~Dv~~~g~--~---~--~~~~~~DavfLDlp---------~Pw------------------~~i~~~~~~L 135 (247)
T PF08704_consen 90 LDDNVTVHHRDVCEEGF--D---E--ELESDFDAVFLDLP---------DPW------------------EAIPHAKRAL 135 (247)
T ss_dssp CCTTEEEEES-GGCG----S---T--T-TTSEEEEEEESS---------SGG------------------GGHHHHHHHE
T ss_pred CCCCceeEecceecccc--c---c--cccCcccEEEEeCC---------CHH------------------HHHHHHHHHH
Confidence 86 78999999853110 0 0 01257999999998 444 3588999999
Q ss_pred -ccCCeEE-EEcCCCCccccHHHHHHHHHHcc
Q psy17365 313 -AVGGKIA-YSTCSLNPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 313 -KpGG~LV-YSTCSl~p~ENE~VV~~~L~~~~ 342 (646)
|+||+|+ ||.|- |.-.-....|++++
T Consensus 136 ~~~gG~i~~fsP~i----eQv~~~~~~L~~~g 163 (247)
T PF08704_consen 136 KKPGGRICCFSPCI----EQVQKTVEALREHG 163 (247)
T ss_dssp -EEEEEEEEEESSH----HHHHHHHHHHHHTT
T ss_pred hcCCceEEEECCCH----HHHHHHHHHHHHCC
Confidence 8999875 55442 33333445566664
No 34
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=3.7e-11 Score=122.62 Aligned_cols=124 Identities=21% Similarity=0.308 Sum_probs=97.7
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+.+.||++|||+|||+|-.|..+++.. ++|.|+++|+|..+|+..++.+...|..++.++.+||..+|-
T Consensus 47 ~~~~~g~~vLDva~GTGd~a~~~~k~~--------g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf--- 115 (238)
T COG2226 47 LGIKPGDKVLDVACGTGDMALLLAKSV--------GTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPF--- 115 (238)
T ss_pred hCCCCCCEEEEecCCccHHHHHHHHhc--------CCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCC---
Confidence 345599999999999999999999986 489999999999999999999999998889999999999882
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHH
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEA 332 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~ 332 (646)
+...||.|.+. .| +|.-+|+ .+.|+++.+.|||||+++- +.+++-++.
T Consensus 116 -------~D~sFD~vt~~-----fg-lrnv~d~----------------~~aL~E~~RVlKpgG~~~v--le~~~p~~~- 163 (238)
T COG2226 116 -------PDNSFDAVTIS-----FG-LRNVTDI----------------DKALKEMYRVLKPGGRLLV--LEFSKPDNP- 163 (238)
T ss_pred -------CCCccCEEEee-----eh-hhcCCCH----------------HHHHHHHHHhhcCCeEEEE--EEcCCCCch-
Confidence 13689999872 22 3433443 3679999999999997763 456655553
Q ss_pred HHHHHHH
Q psy17365 333 VIQRLIV 339 (646)
Q Consensus 333 VV~~~L~ 339 (646)
++..++.
T Consensus 164 ~~~~~~~ 170 (238)
T COG2226 164 VLRKAYI 170 (238)
T ss_pred hhHHHHH
Confidence 3334443
No 35
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.23 E-value=7.3e-11 Score=118.86 Aligned_cols=106 Identities=20% Similarity=0.254 Sum_probs=86.9
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
.++++++|++|||+|||+|..|..++...+ ..|.|+++|+++..++.++++++++|..|+.++++|+.....
T Consensus 71 ~~l~~~~~~~VLDiG~GsG~~a~~la~~~~-------~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~- 142 (215)
T TIGR00080 71 ELLELKPGMKVLEIGTGSGYQAAVLAEIVG-------RDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE- 142 (215)
T ss_pred HHhCCCCcCEEEEECCCccHHHHHHHHHhC-------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc-
Confidence 356789999999999999999999998864 468899999999999999999999999999999999865321
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
....||+|++++++.. +.....+.|+|||+||..
T Consensus 143 ---------~~~~fD~Ii~~~~~~~----------------------------~~~~~~~~L~~gG~lv~~ 176 (215)
T TIGR00080 143 ---------PLAPYDRIYVTAAGPK----------------------------IPEALIDQLKEGGILVMP 176 (215)
T ss_pred ---------ccCCCCEEEEcCCccc----------------------------ccHHHHHhcCcCcEEEEE
Confidence 1247999999876422 223456789999999964
No 36
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.22 E-value=1.6e-10 Score=113.68 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=100.5
Q ss_pred ccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecC
Q psy17365 164 AVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHD 243 (646)
Q Consensus 164 ~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~D 243 (646)
.+..+....|++.++.+|||+|||+|..+..++... +.+.|+++|+++..++.+++|+++++..++.+.++|
T Consensus 18 ~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~--------~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d 89 (187)
T PRK08287 18 EVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF--------PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGE 89 (187)
T ss_pred HHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecC
Confidence 333344445677889999999999999999998763 468999999999999999999999988888888888
Q ss_pred CCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 244 ASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 244 a~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
+.... ...||.|+++.. .+ . + ..++..+.++|+|||+++++..
T Consensus 90 ~~~~~------------~~~~D~v~~~~~---~~------~------------~----~~~l~~~~~~Lk~gG~lv~~~~ 132 (187)
T PRK08287 90 APIEL------------PGKADAIFIGGS---GG------N------------L----TAIIDWSLAHLHPGGRLVLTFI 132 (187)
T ss_pred chhhc------------CcCCCEEEECCC---cc------C------------H----HHHHHHHHHhcCCCeEEEEEEe
Confidence 63210 146999998632 01 0 0 2578889999999999998654
Q ss_pred CCCccccHHHHHHHHHHcc
Q psy17365 324 SLNPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 324 Sl~p~ENE~VV~~~L~~~~ 342 (646)
. .++...+..++++++
T Consensus 133 ~---~~~~~~~~~~l~~~g 148 (187)
T PRK08287 133 L---LENLHSALAHLEKCG 148 (187)
T ss_pred c---HhhHHHHHHHHHHCC
Confidence 3 467777778888876
No 37
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.21 E-value=3e-11 Score=123.53 Aligned_cols=129 Identities=23% Similarity=0.346 Sum_probs=86.4
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
..+.+++|.+|||+|||+|-.|..++..++ +.|.|+++|+++..++.+++.++..+..+|.++.+||..+|-
T Consensus 41 ~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~-------~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~- 112 (233)
T PF01209_consen 41 KLLGLRPGDRVLDVACGTGDVTRELARRVG-------PNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPF- 112 (233)
T ss_dssp HHHT--S--EEEEET-TTSHHHHHHGGGSS----------EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-
T ss_pred hccCCCCCCEEEEeCCChHHHHHHHHHHCC-------CccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcC-
Confidence 345788999999999999999998887764 578999999999999999999999998899999999998863
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcccc
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~EN 330 (646)
....||.|.| +.| +|.-|| +.+.|++..++|||||+++.- .++.-+|
T Consensus 113 ---------~d~sfD~v~~-----~fg-lrn~~d----------------~~~~l~E~~RVLkPGG~l~il--e~~~p~~ 159 (233)
T PF01209_consen 113 ---------PDNSFDAVTC-----SFG-LRNFPD----------------RERALREMYRVLKPGGRLVIL--EFSKPRN 159 (233)
T ss_dssp ----------TT-EEEEEE-----ES--GGG-SS----------------HHHHHHHHHHHEEEEEEEEEE--EEEB-SS
T ss_pred ---------CCCceeEEEH-----Hhh-HHhhCC----------------HHHHHHHHHHHcCCCeEEEEe--eccCCCC
Confidence 1257999986 223 333333 236799999999999999854 3444455
Q ss_pred HHHHHHHHHHc
Q psy17365 331 EAVIQRLIVET 341 (646)
Q Consensus 331 E~VV~~~L~~~ 341 (646)
. .+..+..-+
T Consensus 160 ~-~~~~~~~~y 169 (233)
T PF01209_consen 160 P-LLRALYKFY 169 (233)
T ss_dssp H-HHHHHHHH-
T ss_pred c-hhhceeeee
Confidence 4 566666555
No 38
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.21 E-value=8.2e-11 Score=119.71 Aligned_cols=135 Identities=18% Similarity=0.219 Sum_probs=105.1
Q ss_pred cccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q psy17365 156 TGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP 235 (646)
Q Consensus 156 ~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ 235 (646)
.--||--| |.+.+..+++.||++|||.++|+|..|+.||..++ +.|.|+..|+...+++.+++|++..|+.
T Consensus 75 tQiIyPKD--~~~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg-------~~G~v~tyE~r~d~~k~A~~Nl~~~~l~ 145 (256)
T COG2519 75 TQIIYPKD--AGYIVARLGISPGSRVLEAGTGSGALTAYLARAVG-------PEGHVTTYEIREDFAKTARENLSEFGLG 145 (256)
T ss_pred CceecCCC--HHHHHHHcCCCCCCEEEEcccCchHHHHHHHHhhC-------CCceEEEEEecHHHHHHHHHHHHHhccc
Confidence 33444444 33555678999999999999999999999998886 7899999999999999999999999988
Q ss_pred C-eEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhcc
Q psy17365 236 C-AIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAV 314 (646)
Q Consensus 236 n-i~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKp 314 (646)
+ +.+...|...... ...||+|++|.| +|. +.|.++.++|||
T Consensus 146 d~v~~~~~Dv~~~~~-----------~~~vDav~LDmp---------~PW------------------~~le~~~~~Lkp 187 (256)
T COG2519 146 DRVTLKLGDVREGID-----------EEDVDAVFLDLP---------DPW------------------NVLEHVSDALKP 187 (256)
T ss_pred cceEEEecccccccc-----------ccccCEEEEcCC---------ChH------------------HHHHHHHHHhCC
Confidence 7 8888888765421 237999999988 443 579999999999
Q ss_pred CCeEE-EEcCCCCccccHHHHHHHHHHc
Q psy17365 315 GGKIA-YSTCSLNPLEDEAVIQRLIVET 341 (646)
Q Consensus 315 GG~LV-YSTCSl~p~ENE~VV~~~L~~~ 341 (646)
||.++ |+.|. |+-.-+-..|+++
T Consensus 188 gg~~~~y~P~v----eQv~kt~~~l~~~ 211 (256)
T COG2519 188 GGVVVVYSPTV----EQVEKTVEALRER 211 (256)
T ss_pred CcEEEEEcCCH----HHHHHHHHHHHhc
Confidence 99766 65543 3333333445555
No 39
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.20 E-value=1.2e-10 Score=123.82 Aligned_cols=139 Identities=14% Similarity=0.226 Sum_probs=102.4
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCccccccCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~~~~g 257 (646)
.+|||+|||+|..+..++... +...|+|+|+|+..++.+++|+++++.. ++.++++|+.....
T Consensus 135 ~~VLDlG~GsG~iai~la~~~--------p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~-------- 198 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAF--------PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALP-------- 198 (307)
T ss_pred CEEEEEechhhHHHHHHHHHC--------CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCC--------
Confidence 689999999999999998764 4678999999999999999999999975 58899999754210
Q ss_pred CCCCCCCCeeecCCCCCCCcccccCccccccCCcchh----hhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHH
Q psy17365 258 NKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNG----NNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAV 333 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~----~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~V 333 (646)
...||.|++|||+.+.+.+...+..+ .+.|..+ ..-......|+..+.++|+|||++++-+ .. +.+.
T Consensus 199 ---~~~fDlIvsNPPyi~~~~~~~l~~~~-~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E~---g~--~~~~ 269 (307)
T PRK11805 199 ---GRRYDLIVSNPPYVDAEDMADLPAEY-RHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVEV---GN--SRVH 269 (307)
T ss_pred ---CCCccEEEECCCCCCccchhhcCHhh-ccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEEE---Cc--CHHH
Confidence 13699999999999887654333222 2333211 2223677889999999999999998642 22 2233
Q ss_pred HHHHHHHcc
Q psy17365 334 IQRLIVETQ 342 (646)
Q Consensus 334 V~~~L~~~~ 342 (646)
+...+.+++
T Consensus 270 ~~~~~~~~~ 278 (307)
T PRK11805 270 LEEAYPDVP 278 (307)
T ss_pred HHHHHhhCC
Confidence 666666543
No 40
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.20 E-value=4.5e-10 Score=118.00 Aligned_cols=138 Identities=14% Similarity=0.207 Sum_probs=101.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~~~~ 256 (646)
+.+|||+|||+|..+..++... +...|+|+|+++..++.+++|+++++..+ +.+..+|.....
T Consensus 115 ~~~vLDlG~GsG~i~l~la~~~--------~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~-------- 178 (284)
T TIGR00536 115 ILHILDLGTGSGCIALALAYEF--------PNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL-------- 178 (284)
T ss_pred CCEEEEEeccHhHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC--------
Confidence 3689999999999999998764 35689999999999999999999999865 889998875421
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcch----hhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHH
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSN----GNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEA 332 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~----~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~ 332 (646)
....||.|++|||+.....+...++... +.|.. ...-.....+|+..|.++|+|||.|++.++.- ...
T Consensus 179 ---~~~~fDlIvsNPPyi~~~~~~~~~~~~~-~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~g~~----q~~ 250 (284)
T TIGR00536 179 ---AGQKIDIIVSNPPYIDEEDLADLPNVVR-FEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEIGNW----QQK 250 (284)
T ss_pred ---cCCCccEEEECCCCCCcchhhcCCcccc-cCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEECcc----HHH
Confidence 0126999999999987765433333321 33321 12234577899999999999999999776532 333
Q ss_pred HHHHHHH
Q psy17365 333 VIQRLIV 339 (646)
Q Consensus 333 VV~~~L~ 339 (646)
.|.+++.
T Consensus 251 ~~~~~~~ 257 (284)
T TIGR00536 251 SLKELLR 257 (284)
T ss_pred HHHHHHH
Confidence 4555565
No 41
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.19 E-value=2.9e-10 Score=102.77 Aligned_cols=109 Identities=22% Similarity=0.278 Sum_probs=87.1
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.+.+.++++|||+|||+|..+..+++.+ +.+.|+++|+++..++.++++++.++..++.++..|+......
T Consensus 14 ~~~~~~~~~vldlG~G~G~~~~~l~~~~--------~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~- 84 (124)
T TIGR02469 14 KLRLRPGDVLWDIGAGSGSITIEAARLV--------PNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALED- 84 (124)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHHC--------CCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccChh-
Confidence 3456778899999999999999998875 4579999999999999999999999988888888887643211
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
....||.|+++.+ + ....++++.+.++|||||+++.+.
T Consensus 85 --------~~~~~D~v~~~~~----------~---------------~~~~~~l~~~~~~Lk~gG~li~~~ 122 (124)
T TIGR02469 85 --------SLPEPDRVFIGGS----------G---------------GLLQEILEAIWRRLRPGGRIVLNA 122 (124)
T ss_pred --------hcCCCCEEEECCc----------c---------------hhHHHHHHHHHHHcCCCCEEEEEe
Confidence 1247999998642 0 012378999999999999999653
No 42
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.18 E-value=9.7e-11 Score=119.82 Aligned_cols=154 Identities=15% Similarity=0.210 Sum_probs=116.9
Q ss_pred cccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecC
Q psy17365 165 VSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHD 243 (646)
Q Consensus 165 ~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~D 243 (646)
.++|.+.+..+....+|||+|||.|..++.+|+.. +...|+++|+++...+++.+|++..+.. +|.+++.|
T Consensus 32 DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~--------~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~D 103 (248)
T COG4123 32 DAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRT--------EKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEAD 103 (248)
T ss_pred HHHHHHhhcccccCCeEEEecCCcCHHHHHHhccC--------CCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhh
Confidence 35666777777778999999999999999998774 3479999999999999999999987764 69999999
Q ss_pred CCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 244 ASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 244 a~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
...+..... ...||.|+|+||.--.|.- ++++-... .........-.++++.|.++||+||++.+.
T Consensus 104 i~~~~~~~~--------~~~fD~Ii~NPPyf~~~~~-~~~~~~~~---~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V-- 169 (248)
T COG4123 104 IKEFLKALV--------FASFDLIICNPPYFKQGSR-LNENPLRA---IARHEITLDLEDLIRAAAKLLKPGGRLAFV-- 169 (248)
T ss_pred HHHhhhccc--------ccccCEEEeCCCCCCCccc-cCcChhhh---hhhhhhcCCHHHHHHHHHHHccCCCEEEEE--
Confidence 988765332 2469999999999888865 33332110 011111222357899999999999999775
Q ss_pred CCCccccHHHHHHHHHHcc
Q psy17365 324 SLNPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 324 Sl~p~ENE~VV~~~L~~~~ 342 (646)
+|.|.-.-|-..|++++
T Consensus 170 --~r~erl~ei~~~l~~~~ 186 (248)
T COG4123 170 --HRPERLAEIIELLKSYN 186 (248)
T ss_pred --ecHHHHHHHHHHHHhcC
Confidence 77787777777787765
No 43
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.18 E-value=3e-10 Score=111.78 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=95.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
+|.+|||+|||+|..+..++... +.+.|+|+|+++.+++++++++++++..++.++++|+..++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~--------~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~------- 106 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIAR--------PELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQH------- 106 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHC--------CCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccc-------
Confidence 48899999999999999887542 467899999999999999999999999899999999877521
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHH
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQR 336 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~ 336 (646)
...||.|++++ .+ + ...++..+.++|+|||+++.. .....+..+..
T Consensus 107 ----~~~fD~I~s~~----~~------~----------------~~~~~~~~~~~LkpgG~lvi~----~~~~~~~~~~~ 152 (181)
T TIGR00138 107 ----EEQFDVITSRA----LA------S----------------LNVLLELTLNLLKVGGYFLAY----KGKKYLDEIEE 152 (181)
T ss_pred ----cCCccEEEehh----hh------C----------------HHHHHHHHHHhcCCCCEEEEE----cCCCcHHHHHH
Confidence 24799999863 00 0 124677778999999999965 35556666666
Q ss_pred HHHHcc-CcEEEeecc
Q psy17365 337 LIVETQ-GAVQLVDVS 351 (646)
Q Consensus 337 ~L~~~~-~~~elv~~~ 351 (646)
+.+++. ..++.+++.
T Consensus 153 ~~e~~~~~~~~~~~~~ 168 (181)
T TIGR00138 153 AKRKCQVLGVEPLEVP 168 (181)
T ss_pred HHHhhhhcCceEeecc
Confidence 666632 126666654
No 44
>PRK14968 putative methyltransferase; Provisional
Probab=99.14 E-value=9.3e-10 Score=107.13 Aligned_cols=147 Identities=18% Similarity=0.143 Sum_probs=102.9
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC--eEEEecCCCCCc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC--AIITNHDASVMP 248 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n--i~v~~~Da~~~p 248 (646)
..+...++.+|||+|||.|..+..++.. ...|+|+|+++..++.+++++...+..+ +.+.++|.....
T Consensus 17 ~~~~~~~~~~vLd~G~G~G~~~~~l~~~----------~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~ 86 (188)
T PRK14968 17 ENAVDKKGDRVLEVGTGSGIVAIVAAKN----------GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF 86 (188)
T ss_pred HhhhccCCCEEEEEccccCHHHHHHHhh----------cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc
Confidence 3444578889999999999999988865 3579999999999999999998888766 777888864421
Q ss_pred cccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcc
Q psy17365 249 NVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPL 328 (646)
Q Consensus 249 ~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ 328 (646)
....||.|++++|+...+......+ |..+..............++.++.++|||||.+++..+++..
T Consensus 87 -----------~~~~~d~vi~n~p~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~~~~- 153 (188)
T PRK14968 87 -----------RGDKFDVILFNPPYLPTEEEEEWDD-WLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSSLTG- 153 (188)
T ss_pred -----------cccCceEEEECCCcCCCCchhhhhh-hhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcccCC-
Confidence 1136999999999865442211111 111111112222345568899999999999999888777643
Q ss_pred ccHHHHHHHHHHcc
Q psy17365 329 EDEAVIQRLIVETQ 342 (646)
Q Consensus 329 ENE~VV~~~L~~~~ 342 (646)
..-+..++.+.+
T Consensus 154 --~~~l~~~~~~~g 165 (188)
T PRK14968 154 --EDEVLEYLEKLG 165 (188)
T ss_pred --HHHHHHHHHHCC
Confidence 334556777765
No 45
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.14 E-value=5.8e-10 Score=121.99 Aligned_cols=145 Identities=14% Similarity=0.176 Sum_probs=102.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
+.++.+|||+|||+|..+..++... +...|+|+|+|+..++.+++|+++++. ++.++++|......
T Consensus 249 l~~~~rVLDLGcGSG~IaiaLA~~~--------p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~gDl~e~~l----- 314 (423)
T PRK14966 249 LPENGRVWDLGTGSGAVAVTVALER--------PDAFVRASDISPPALETARKNAADLGA-RVEFAHGSWFDTDM----- 314 (423)
T ss_pred cCCCCEEEEEeChhhHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEcchhcccc-----
Confidence 3466799999999999998887653 467899999999999999999999886 78889998754210
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcc----hhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcccc
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPS----NGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~----~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~EN 330 (646)
.....||.|++|||....+.....+... ++.|. ....--...++|+..+.+.|+|||.+++.. . ...
T Consensus 315 ----~~~~~FDLIVSNPPYI~~~e~~l~~~~v-~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lilEi---G-~~Q 385 (423)
T PRK14966 315 ----PSEGKWDIIVSNPPYIENGDKHLLQGDL-RFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLLEH---G-FDQ 385 (423)
T ss_pred ----ccCCCccEEEECCCCCCcchhhhcchhh-hcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEEEE---C-ccH
Confidence 0013699999999987765432222211 22221 112223456799999999999999988542 2 244
Q ss_pred HHHHHHHHHHcc
Q psy17365 331 EAVIQRLIVETQ 342 (646)
Q Consensus 331 E~VV~~~L~~~~ 342 (646)
.+.|.+++.+.+
T Consensus 386 ~e~V~~ll~~~G 397 (423)
T PRK14966 386 GAAVRGVLAENG 397 (423)
T ss_pred HHHHHHHHHHCC
Confidence 556677777754
No 46
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.13 E-value=3.5e-10 Score=113.05 Aligned_cols=117 Identities=15% Similarity=0.190 Sum_probs=88.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCC-CCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDA-SVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da-~~~p~~~~~~~ 255 (646)
++.+|||+|||+|..+..+++.. +.+.|+|+|+++.+++.++++++..+.+++.++++|+ ..++...
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~--------p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~---- 107 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKAN--------PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF---- 107 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHC--------CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc----
Confidence 57899999999999999998864 4678999999999999999999999988999999998 5543211
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
....||.|++..|. | |.......-...+..+|.++.++|||||+++++|+
T Consensus 108 ----~~~~~D~V~~~~~~---------p-----~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~ 157 (202)
T PRK00121 108 ----PDGSLDRIYLNFPD---------P-----WPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD 157 (202)
T ss_pred ----CccccceEEEECCC---------C-----CCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC
Confidence 12469999986541 1 11000000011346789999999999999998874
No 47
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.13 E-value=8.6e-10 Score=108.67 Aligned_cols=117 Identities=19% Similarity=0.162 Sum_probs=80.8
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
.+++|++|||+|||||+.|.+++.... +.+.|+|+|+++.+ ..+++.++++|+.........
T Consensus 29 ~i~~g~~VLDiG~GtG~~~~~l~~~~~-------~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l 90 (188)
T TIGR00438 29 LIKPGDTVLDLGAAPGGWSQVAVEQVG-------GKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKI 90 (188)
T ss_pred ccCCCCEEEEecCCCCHHHHHHHHHhC-------CCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHH
Confidence 457899999999999999999998763 46799999999864 235677888887653210000
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
........||.|++|+++...| .|+...... ...+..+|..+.++|+|||+++..
T Consensus 91 --~~~~~~~~~D~V~~~~~~~~~g----------~~~~~~~~~-~~~~~~~l~~~~~~LkpgG~lvi~ 145 (188)
T TIGR00438 91 --RERVGDDKVDVVMSDAAPNISG----------YWDIDHLRS-IDLVELALDIAKEVLKPKGNFVVK 145 (188)
T ss_pred --HHHhCCCCccEEEcCCCCCCCC----------CccccHHHH-HHHHHHHHHHHHHHccCCCEEEEE
Confidence 0000124699999997644344 233222222 235678999999999999999975
No 48
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.12 E-value=2.4e-10 Score=121.87 Aligned_cols=108 Identities=15% Similarity=0.117 Sum_probs=83.8
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
+..++.+|||+|||+|..+..+|.. ...|+|+|+++..++.+++|++.+|+.++.+.++|+..+...
T Consensus 170 ~~~~~~~VLDl~cG~G~~sl~la~~----------~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~--- 236 (315)
T PRK03522 170 RELPPRSMWDLFCGVGGFGLHCATP----------GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATA--- 236 (315)
T ss_pred HhcCCCEEEEccCCCCHHHHHHHhc----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHh---
Confidence 3345789999999999999998863 358999999999999999999999998999999999765321
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCC
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLN 326 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~ 326 (646)
....||.|++|||++|.+. .+...+.-++| +++||++|.-.
T Consensus 237 ------~~~~~D~Vv~dPPr~G~~~-------------------------~~~~~l~~~~~-~~ivyvsc~p~ 277 (315)
T PRK03522 237 ------QGEVPDLVLVNPPRRGIGK-------------------------ELCDYLSQMAP-RFILYSSCNAQ 277 (315)
T ss_pred ------cCCCCeEEEECCCCCCccH-------------------------HHHHHHHHcCC-CeEEEEECCcc
Confidence 0135999999999887541 12222333566 57999999753
No 49
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.12 E-value=4.1e-10 Score=113.44 Aligned_cols=105 Identities=25% Similarity=0.286 Sum_probs=84.3
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
.++++++|++|||+|||+|..|..+++.++ ..|.|+++|+++..++.++++++++|..++.++++|+.....
T Consensus 70 ~~l~~~~g~~VLdIG~GsG~~t~~la~~~~-------~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~- 141 (212)
T PRK13942 70 ELLDLKEGMKVLEIGTGSGYHAAVVAEIVG-------KSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE- 141 (212)
T ss_pred HHcCCCCcCEEEEECCcccHHHHHHHHhcC-------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC-
Confidence 356789999999999999999999998864 468999999999999999999999999999999999865321
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
....||+|+++.-+ ++ +.....+.|||||+||.
T Consensus 142 ---------~~~~fD~I~~~~~~---------~~-------------------~~~~l~~~LkpgG~lvi 174 (212)
T PRK13942 142 ---------ENAPYDRIYVTAAG---------PD-------------------IPKPLIEQLKDGGIMVI 174 (212)
T ss_pred ---------cCCCcCEEEECCCc---------cc-------------------chHHHHHhhCCCcEEEE
Confidence 12579999986421 11 12234567999999985
No 50
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.10 E-value=7.7e-10 Score=105.06 Aligned_cols=111 Identities=18% Similarity=0.251 Sum_probs=90.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
+.+.+|||+|||+|..+..++..+. +.+.++++|+++..++.+++++++++++|+.+.++|+..++.. .
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~-------~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~-~--- 70 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELN-------PGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE-L--- 70 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHST-------TTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC-S---
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcC-------CCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc-c---
Confidence 5678999999999999999996543 5788999999999999999999999999999999999885432 1
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
...||.|+++.++... .....+|..+.++|++||.++.+.+.
T Consensus 71 -----~~~~D~I~~~~~l~~~----------------------~~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 71 -----EEKFDIIISNGVLHHF----------------------PDPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp -----STTEEEEEEESTGGGT----------------------SHHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred -----CCCeeEEEEcCchhhc----------------------cCHHHHHHHHHHHcCCCcEEEEEECC
Confidence 1579999998664111 11236789999999999999988776
No 51
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.10 E-value=9e-10 Score=111.49 Aligned_cols=112 Identities=21% Similarity=0.312 Sum_probs=89.5
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.+.+++|.+|||+|||+|..+..+++..+ +.+.|+++|+++..++.+++++++.+.+++.++++|+..++.
T Consensus 40 ~l~~~~~~~vLDiGcG~G~~~~~la~~~~-------~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-- 110 (231)
T TIGR02752 40 RMNVQAGTSALDVCCGTADWSIALAEAVG-------PEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF-- 110 (231)
T ss_pred hcCCCCCCEEEEeCCCcCHHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC--
Confidence 45778899999999999999999998764 467999999999999999999998888899999999876541
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
....||.|+++-. ++..++ ..++|..+.++|+|||+++..+
T Consensus 111 --------~~~~fD~V~~~~~------l~~~~~----------------~~~~l~~~~~~Lk~gG~l~~~~ 151 (231)
T TIGR02752 111 --------DDNSFDYVTIGFG------LRNVPD----------------YMQVLREMYRVVKPGGKVVCLE 151 (231)
T ss_pred --------CCCCccEEEEecc------cccCCC----------------HHHHHHHHHHHcCcCeEEEEEE
Confidence 1257999987532 221121 1367899999999999998653
No 52
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.09 E-value=3e-10 Score=114.30 Aligned_cols=105 Identities=22% Similarity=0.295 Sum_probs=82.1
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
.+|+++||++|||+++|+|..|+.|+.+++ +.|.|+++|+++.-++.+++++++++..||.+..+|+..-.
T Consensus 66 ~~L~l~pg~~VLeIGtGsGY~aAlla~lvg-------~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~-- 136 (209)
T PF01135_consen 66 EALDLKPGDRVLEIGTGSGYQAALLAHLVG-------PVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW-- 136 (209)
T ss_dssp HHTTC-TT-EEEEES-TTSHHHHHHHHHHS-------TTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT--
T ss_pred HHHhcCCCCEEEEecCCCcHHHHHHHHhcC-------ccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc--
Confidence 457899999999999999999999999985 57899999999999999999999999999999999986421
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
.....||+|++.+.|. ..|.. -++.|++||+||.
T Consensus 137 --------~~~apfD~I~v~~a~~------~ip~~----------------------l~~qL~~gGrLV~ 170 (209)
T PF01135_consen 137 --------PEEAPFDRIIVTAAVP------EIPEA----------------------LLEQLKPGGRLVA 170 (209)
T ss_dssp --------GGG-SEEEEEESSBBS------S--HH----------------------HHHTEEEEEEEEE
T ss_pred --------ccCCCcCEEEEeeccc------hHHHH----------------------HHHhcCCCcEEEE
Confidence 1235799999986542 23332 3567999999993
No 53
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.07 E-value=1.3e-09 Score=109.19 Aligned_cols=106 Identities=18% Similarity=0.213 Sum_probs=84.2
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCcc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPN 249 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~ 249 (646)
.+|++++|++|||+|||+|..|..++++++ +.|.|+++|+++..++.+++|+++++.. ++.+.++|+.....
T Consensus 66 ~~l~~~~~~~VLDiG~GsG~~~~~la~~~~-------~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~ 138 (205)
T PRK13944 66 ELIEPRPGMKILEVGTGSGYQAAVCAEAIE-------RRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE 138 (205)
T ss_pred HhcCCCCCCEEEEECcCccHHHHHHHHhcC-------CCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc
Confidence 346788999999999999999999998864 4689999999999999999999999976 48899999865321
Q ss_pred ccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 250 VLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 250 ~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
....||+|+++.... .+.....+.|+|||+|+..
T Consensus 139 ----------~~~~fD~Ii~~~~~~----------------------------~~~~~l~~~L~~gG~lvi~ 172 (205)
T PRK13944 139 ----------KHAPFDAIIVTAAAS----------------------------TIPSALVRQLKDGGVLVIP 172 (205)
T ss_pred ----------cCCCccEEEEccCcc----------------------------hhhHHHHHhcCcCcEEEEE
Confidence 124799999986521 1123456789999999864
No 54
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=2.1e-09 Score=112.94 Aligned_cols=146 Identities=18% Similarity=0.281 Sum_probs=102.0
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
+|||+|+|+|..++.+|... +...|+|+|+|++.++.++.|++++|+.++.++..|... ..
T Consensus 113 ~ilDlGTGSG~iai~la~~~--------~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dlf~--~~--------- 173 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEG--------PDAEVIAVDISPDALALARENAERNGLVRVLVVQSDLFE--PL--------- 173 (280)
T ss_pred cEEEecCChHHHHHHHHhhC--------cCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeeccc--cc---------
Confidence 79999999999999998764 467999999999999999999999998776666665432 11
Q ss_pred CCCCCCeeecCCCCCCCcccccCccccccCCcc----hhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHH
Q psy17365 260 VPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPS----NGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQ 335 (646)
Q Consensus 260 ~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~----~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~ 335 (646)
..+||.|+++||+-..-.....|+... ..|. ....-.....+|+..+..+|++||.++.- ++.+. .+.|.
T Consensus 174 -~~~fDlIVsNPPYip~~~~~~~~~~~~-~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~le-~g~~q---~~~v~ 247 (280)
T COG2890 174 -RGKFDLIVSNPPYIPAEDPELLPEVVR-YEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLILE-IGLTQ---GEAVK 247 (280)
T ss_pred -CCceeEEEeCCCCCCCcccccChhhhc-cCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEEE-ECCCc---HHHHH
Confidence 137999999999876651111222111 1110 11123346779999999999999988854 55533 45566
Q ss_pred HHHHHccCcEEEeecc
Q psy17365 336 RLIVETQGAVQLVDVS 351 (646)
Q Consensus 336 ~~L~~~~~~~elv~~~ 351 (646)
+++.+.+. +..+...
T Consensus 248 ~~~~~~~~-~~~v~~~ 262 (280)
T COG2890 248 ALFEDTGF-FEIVETL 262 (280)
T ss_pred HHHHhcCC-ceEEEEE
Confidence 67777664 5545443
No 55
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.06 E-value=7.8e-10 Score=123.25 Aligned_cols=88 Identities=22% Similarity=0.146 Sum_probs=72.0
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+++.+|.+|||+|||+|..|..+|.. .+.|+|+|+|+..++.+++|++.++..|+.+.++|+.......
T Consensus 293 l~~~~~~~VLDlgcGtG~~sl~la~~----------~~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~- 361 (443)
T PRK13168 293 LDPQPGDRVLDLFCGLGNFTLPLARQ----------AAEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ- 361 (443)
T ss_pred hcCCCCCEEEEEeccCCHHHHHHHHh----------CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh-
Confidence 46678999999999999999998865 3589999999999999999999999999999999986532100
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCC
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGD 276 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~ 276 (646)
......||.|++|||++|.
T Consensus 362 -----~~~~~~fD~Vi~dPPr~g~ 380 (443)
T PRK13168 362 -----PWALGGFDKVLLDPPRAGA 380 (443)
T ss_pred -----hhhcCCCCEEEECcCCcCh
Confidence 0012469999999998874
No 56
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.05 E-value=1.9e-09 Score=108.49 Aligned_cols=130 Identities=19% Similarity=0.113 Sum_probs=84.0
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc-cc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL-YT 253 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~-~~ 253 (646)
+++|.+|||+|||||+.|..+++.++ +.|.|+|+|+++. .+.+++.++++|+...+... ..
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~-------~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~ 110 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIG-------DKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALL 110 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcC-------CCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHH
Confidence 36788999999999999999998864 4689999999881 23567899999988743100 00
Q ss_pred CCCCCCCCCCCCeeecCC-CCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHH
Q psy17365 254 DADGNKVPMKFDRVLCDV-PCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEA 332 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~-PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~ 332 (646)
.. .....||.|++|. |.- .| +| . .+......+...+|..+.++|||||++|..+ ...+...
T Consensus 111 ~~---~~~~~~D~V~S~~~~~~-~g----~~------~-~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~---~~~~~~~ 172 (209)
T PRK11188 111 ER---VGDSKVQVVMSDMAPNM-SG----TP------A-VDIPRAMYLVELALDMCRDVLAPGGSFVVKV---FQGEGFD 172 (209)
T ss_pred HH---hCCCCCCEEecCCCCcc-CC----Ch------H-HHHHHHHHHHHHHHHHHHHHcCCCCEEEEEE---ecCcCHH
Confidence 00 0125799999985 311 11 11 0 0111112224579999999999999999643 4445544
Q ss_pred HHHHHHHH
Q psy17365 333 VIQRLIVE 340 (646)
Q Consensus 333 VV~~~L~~ 340 (646)
-+...|++
T Consensus 173 ~~l~~l~~ 180 (209)
T PRK11188 173 EYLREIRS 180 (209)
T ss_pred HHHHHHHh
Confidence 34444443
No 57
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.05 E-value=1.6e-09 Score=107.36 Aligned_cols=119 Identities=19% Similarity=0.164 Sum_probs=93.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
++.+|||+|||+|..+..++... +.+.|+|+|+++.+++.++++++..+.+++.+.+.|+..++.
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~--------~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~------- 109 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIAR--------PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ------- 109 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHC--------CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-------
Confidence 48899999999999999888753 478999999999999999999999999889999999877532
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHH
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQR 336 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~ 336 (646)
..+||.|+++. .+ ++ ..++..+.++|||||++++.... ...+.+.+
T Consensus 110 ----~~~fDlV~~~~----~~----~~------------------~~~l~~~~~~LkpGG~lv~~~~~----~~~~~l~~ 155 (187)
T PRK00107 110 ----EEKFDVVTSRA----VA----SL------------------SDLVELCLPLLKPGGRFLALKGR----DPEEEIAE 155 (187)
T ss_pred ----CCCccEEEEcc----cc----CH------------------HHHHHHHHHhcCCCeEEEEEeCC----ChHHHHHH
Confidence 24799999852 11 00 25788999999999999987544 34455565
Q ss_pred HHHHccCc
Q psy17365 337 LIVETQGA 344 (646)
Q Consensus 337 ~L~~~~~~ 344 (646)
+.+..+..
T Consensus 156 ~~~~~~~~ 163 (187)
T PRK00107 156 LPKALGGK 163 (187)
T ss_pred HHHhcCce
Confidence 56655543
No 58
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.03 E-value=2.5e-09 Score=106.13 Aligned_cols=117 Identities=17% Similarity=0.249 Sum_probs=88.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+|||+|||+|..+..+|... +.+.|+|+|++..++..+..++++.++.|+.++++|+..++....
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~--------p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~---- 83 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQN--------PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF---- 83 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhC--------CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC----
Confidence 45689999999999999999763 578999999999999999999999999999999999976542111
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
....||.|+++.| +| |.+-.. .... -++..++..+.++|||||.|.++|
T Consensus 84 ---~~~~~d~v~~~~p---------dp--w~k~~h-~~~r--~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 84 ---PDGSLSKVFLNFP---------DP--WPKKRH-NKRR--ITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred ---CCCceeEEEEECC---------Cc--CCCCCc-cccc--cCCHHHHHHHHHHhCCCCEEEEEe
Confidence 1136999999876 22 111000 0001 114578999999999999998876
No 59
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.03 E-value=2e-09 Score=119.54 Aligned_cols=111 Identities=17% Similarity=0.140 Sum_probs=85.0
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
++++.++++|||+|||+|..+..+|.. ...|+|+|+++..++.+++|++.+|+.|+.++.+|+..+....
T Consensus 287 ~l~~~~~~~vLDl~cG~G~~sl~la~~----------~~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 287 ALELQGEELVVDAYCGVGTFTLPLAKQ----------AKSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQ 356 (431)
T ss_pred HhccCCCCEEEEcCCCcCHHHHHHHHh----------CCEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHH
Confidence 345678899999999999999998865 3489999999999999999999999999999999986532100
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
. .....||.|++|||.+|.. ..+|.. +.-++++ .+||.+|.
T Consensus 357 ~------~~~~~~D~vi~dPPr~G~~------------------------~~~l~~-l~~l~~~-~ivyvsc~ 397 (431)
T TIGR00479 357 P------WAGQIPDVLLLDPPRKGCA------------------------AEVLRT-IIELKPE-RIVYVSCN 397 (431)
T ss_pred H------hcCCCCCEEEECcCCCCCC------------------------HHHHHH-HHhcCCC-EEEEEcCC
Confidence 0 0113699999999987643 134443 3347885 58899896
No 60
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.03 E-value=3.6e-09 Score=110.10 Aligned_cols=114 Identities=18% Similarity=0.273 Sum_probs=90.1
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
.+.++.+|++|||+|||+|..+.+++..++ +.+.|+++|+++.+++.++++...++..++.+..+|+..++.
T Consensus 71 ~~~~~~~g~~VLDiG~G~G~~~~~~a~~~g-------~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~- 142 (272)
T PRK11873 71 ALAELKPGETVLDLGSGGGFDCFLAARRVG-------PTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV- 142 (272)
T ss_pred hhccCCCCCEEEEeCCCCCHHHHHHHHHhC-------CCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC-
Confidence 345688999999999999988888877664 567999999999999999999999999899988899876541
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
....||.|+++.- +...|+. ..++.++.++|||||+|+.+.-
T Consensus 143 ---------~~~~fD~Vi~~~v------~~~~~d~----------------~~~l~~~~r~LkpGG~l~i~~~ 184 (272)
T PRK11873 143 ---------ADNSVDVIISNCV------INLSPDK----------------ERVFKEAFRVLKPGGRFAISDV 184 (272)
T ss_pred ---------CCCceeEEEEcCc------ccCCCCH----------------HHHHHHHHHHcCCCcEEEEEEe
Confidence 1247999997632 1111221 3679999999999999998753
No 61
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=1.5e-09 Score=108.20 Aligned_cols=104 Identities=18% Similarity=0.305 Sum_probs=85.5
Q ss_pred ccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcc
Q psy17365 170 PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPN 249 (646)
Q Consensus 170 ~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~ 249 (646)
..+|+++||++||+++||+|.-|+-||++. |.|+++|+++.-++.++.|++++|..||.+.++|+..
T Consensus 65 ~~~L~~~~g~~VLEIGtGsGY~aAvla~l~----------~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~--- 131 (209)
T COG2518 65 LQLLELKPGDRVLEIGTGSGYQAAVLARLV----------GRVVSIERIEELAEQARRNLETLGYENVTVRHGDGSK--- 131 (209)
T ss_pred HHHhCCCCCCeEEEECCCchHHHHHHHHHh----------CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCccc---
Confidence 456899999999999999999999999883 5999999999999999999999999999999999864
Q ss_pred ccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 250 VLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 250 ~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
|......||+|++.+- ...-|+. -++.||+||+||.-
T Consensus 132 -------G~~~~aPyD~I~Vtaa------a~~vP~~----------------------Ll~QL~~gGrlv~P 168 (209)
T COG2518 132 -------GWPEEAPYDRIIVTAA------APEVPEA----------------------LLDQLKPGGRLVIP 168 (209)
T ss_pred -------CCCCCCCcCEEEEeec------cCCCCHH----------------------HHHhcccCCEEEEE
Confidence 2233468999999653 1223332 24569999999953
No 62
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.00 E-value=5.9e-09 Score=108.36 Aligned_cols=114 Identities=16% Similarity=0.238 Sum_probs=86.6
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHH---HcCCCCeEEEecCCCCCc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAK---RLNSPCAIITNHDASVMP 248 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~---rlg~~ni~v~~~Da~~~p 248 (646)
.+.++++++|||+|||+|..+..+++.++ +.+.|+|+|+|+..++.++++.. ..+..++.++++|+..+|
T Consensus 68 ~~~~~~~~~VLDlGcGtG~~~~~la~~~~-------~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp 140 (261)
T PLN02233 68 WSGAKMGDRVLDLCCGSGDLAFLLSEKVG-------SDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLP 140 (261)
T ss_pred HhCCCCCCEEEEECCcCCHHHHHHHHHhC-------CCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCC
Confidence 45678899999999999999988887753 46899999999999999887653 224568899999998765
Q ss_pred cccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 249 NVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 249 ~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
. ....||.|++.- +++.-++ ...+|.++.++|||||+++.++.+
T Consensus 141 ~----------~~~sfD~V~~~~------~l~~~~d----------------~~~~l~ei~rvLkpGG~l~i~d~~ 184 (261)
T PLN02233 141 F----------DDCYFDAITMGY------GLRNVVD----------------RLKAMQEMYRVLKPGSRVSILDFN 184 (261)
T ss_pred C----------CCCCEeEEEEec------ccccCCC----------------HHHHHHHHHHHcCcCcEEEEEECC
Confidence 2 124799998631 1222222 136799999999999999987655
No 63
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.00 E-value=5.4e-09 Score=118.28 Aligned_cols=142 Identities=14% Similarity=0.227 Sum_probs=101.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~~~ 255 (646)
++.+|||+|||+|..+..++..+ +...|+|+|+|+..++.++.|++++++. ++.++++|+....
T Consensus 138 ~~~~VLDlG~GsG~iai~la~~~--------p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~------- 202 (506)
T PRK01544 138 KFLNILELGTGSGCIAISLLCEL--------PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI------- 202 (506)
T ss_pred CCCEEEEccCchhHHHHHHHHHC--------CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC-------
Confidence 45789999999999999888764 4679999999999999999999999875 5888888864311
Q ss_pred CCCCCCCCCCeeecCCCCCCCccccc-CccccccCCcch----hhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcccc
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRK-NPDIWTKWTPSN----GNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk-~pd~~~~w~~~~----~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~EN 330 (646)
....||.|+++||......... .+++ ..+.|.. ...-.....+|+..+.++|+|||.+++. +..+ .
T Consensus 203 ----~~~~fDlIvsNPPYi~~~~~~~l~~~v-~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE-ig~~---q 273 (506)
T PRK01544 203 ----EKQKFDFIVSNPPYISHSEKSEMAIET-INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE-IGFK---Q 273 (506)
T ss_pred ----cCCCccEEEECCCCCCchhhhhcCchh-hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE-ECCc---h
Confidence 0147999999999887654311 1222 1222211 1223346778999999999999999875 4443 3
Q ss_pred HHHHHHHHHHcc
Q psy17365 331 EAVIQRLIVETQ 342 (646)
Q Consensus 331 E~VV~~~L~~~~ 342 (646)
.+.|..++.+.+
T Consensus 274 ~~~v~~~~~~~g 285 (506)
T PRK01544 274 EEAVTQIFLDHG 285 (506)
T ss_pred HHHHHHHHHhcC
Confidence 445666666654
No 64
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.99 E-value=6.1e-09 Score=112.33 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=97.2
Q ss_pred cccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEec
Q psy17365 163 EAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNH 242 (646)
Q Consensus 163 d~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~ 242 (646)
|..|.+....+......+|||+|||.|..+..++... +...|+++|+++..++.++.|+++.++. ..+...
T Consensus 182 D~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~--------p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~ 252 (342)
T PRK09489 182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS--------PKIRLTLSDVSAAALESSRATLAANGLE-GEVFAS 252 (342)
T ss_pred CHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEc
Confidence 4454444444444445689999999999999988763 4668999999999999999999998875 355666
Q ss_pred CCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 243 DASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 243 Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
|+.... ...||.|++++|-- .|. + .....-.+++..|.++|||||.|++.+
T Consensus 253 D~~~~~------------~~~fDlIvsNPPFH-~g~-----~-----------~~~~~~~~~i~~a~~~LkpgG~L~iVa 303 (342)
T PRK09489 253 NVFSDI------------KGRFDMIISNPPFH-DGI-----Q-----------TSLDAAQTLIRGAVRHLNSGGELRIVA 303 (342)
T ss_pred cccccc------------CCCccEEEECCCcc-CCc-----c-----------ccHHHHHHHHHHHHHhcCcCCEEEEEE
Confidence 653311 25799999999942 111 0 001223578999999999999999999
Q ss_pred CCCCccccHHHHHH
Q psy17365 323 CSLNPLEDEAVIQR 336 (646)
Q Consensus 323 CSl~p~ENE~VV~~ 336 (646)
+++.|.+. .+++
T Consensus 304 n~~l~y~~--~l~~ 315 (342)
T PRK09489 304 NAFLPYPD--LLDE 315 (342)
T ss_pred eCCCChHH--HHHH
Confidence 99888764 4443
No 65
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.98 E-value=3.9e-09 Score=105.87 Aligned_cols=105 Identities=18% Similarity=0.211 Sum_probs=83.5
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
.+++++++++|||+|||+|..|..++... +.|+++|+++..+..++++++++++.++.++.+|+....
T Consensus 72 ~~l~~~~~~~VLeiG~GsG~~t~~la~~~----------~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~-- 139 (212)
T PRK00312 72 ELLELKPGDRVLEIGTGSGYQAAVLAHLV----------RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW-- 139 (212)
T ss_pred HhcCCCCCCEEEEECCCccHHHHHHHHHh----------CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC--
Confidence 35678899999999999999998777652 479999999999999999999999999999999975421
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
.....||+|+++.+|.. +.....++|+|||+|+.+..
T Consensus 140 --------~~~~~fD~I~~~~~~~~----------------------------~~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 140 --------PAYAPFDRILVTAAAPE----------------------------IPRALLEQLKEGGILVAPVG 176 (212)
T ss_pred --------CcCCCcCEEEEccCchh----------------------------hhHHHHHhcCCCcEEEEEEc
Confidence 11257999999875421 22345678999999997653
No 66
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.96 E-value=1e-08 Score=100.30 Aligned_cols=124 Identities=20% Similarity=0.259 Sum_probs=101.1
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
+.-.|..|+|+|||+|..+...+-+ +...|+|+|+|++.++.+++|+++ +..++.+++.|++.+.
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~l---------Ga~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~dv~~~~----- 106 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALL---------GASRVLAVDIDPEALEIARANAEE-LLGDVEFVVADVSDFR----- 106 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhc---------CCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcchhhcC-----
Confidence 4446888999999999988876644 467999999999999999999999 4567999999998764
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHH
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAV 333 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~V 333 (646)
..||.|+.||| .|+.++++|. ..|..|++.- ..||| ++..-+++-
T Consensus 107 --------~~~dtvimNPP---FG~~~rhaDr-----------------~Fl~~Ale~s----~vVYs---iH~a~~~~f 151 (198)
T COG2263 107 --------GKFDTVIMNPP---FGSQRRHADR-----------------PFLLKALEIS----DVVYS---IHKAGSRDF 151 (198)
T ss_pred --------CccceEEECCC---CccccccCCH-----------------HHHHHHHHhh----heEEE---eeccccHHH
Confidence 57999999999 6777888875 6788888875 57996 566668888
Q ss_pred HHHHHHHccCcEEE
Q psy17365 334 IQRLIVETQGAVQL 347 (646)
Q Consensus 334 V~~~L~~~~~~~el 347 (646)
+..+....++.+..
T Consensus 152 ~~~~~~~~G~~v~~ 165 (198)
T COG2263 152 VEKFAADLGGTVTH 165 (198)
T ss_pred HHHHHHhcCCeEEE
Confidence 88888888765443
No 67
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.95 E-value=1.8e-09 Score=107.82 Aligned_cols=101 Identities=26% Similarity=0.295 Sum_probs=75.4
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCCCcccccc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASVMPNVLYT 253 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~ 253 (646)
+++|+.||||+||-|..|+++|..- ....|+|+|+++..++.|++|++.+++.+ +.++++|+..++.
T Consensus 99 v~~~e~VlD~faGIG~f~l~~ak~~--------~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~---- 166 (200)
T PF02475_consen 99 VKPGEVVLDMFAGIGPFSLPIAKHG--------KAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP---- 166 (200)
T ss_dssp --TT-EEEETT-TTTTTHHHHHHHT---------SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG-------
T ss_pred CCcceEEEEccCCccHHHHHHhhhc--------CccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC----
Confidence 6789999999999999999998742 35689999999999999999999999876 6789999988753
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
...||+|+++.|-+.. ..|..|+.++++||.+-|
T Consensus 167 -------~~~~drvim~lp~~~~--------------------------~fl~~~~~~~~~~g~ihy 200 (200)
T PF02475_consen 167 -------EGKFDRVIMNLPESSL--------------------------EFLDAALSLLKEGGIIHY 200 (200)
T ss_dssp -------TT-EEEEEE--TSSGG--------------------------GGHHHHHHHEEEEEEEEE
T ss_pred -------ccccCEEEECChHHHH--------------------------HHHHHHHHHhcCCcEEEC
Confidence 2579999999883332 358889999999999877
No 68
>KOG1540|consensus
Probab=98.94 E-value=7.7e-09 Score=104.96 Aligned_cols=135 Identities=17% Similarity=0.187 Sum_probs=104.4
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC---CeEEEecCCCCC
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP---CAIITNHDASVM 247 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~---ni~v~~~Da~~~ 247 (646)
..|+|.+|++|||||+|+|-.|.-|.+.+.+..+ ...+.|+..|+++..++..++++++.++. .+.++++||..+
T Consensus 94 ~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~--~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 94 SKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFG--DRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred hccCCCCCCeEEEecCCcchhHHHHHHhhccccC--CCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 3578889999999999999999999988753211 12478999999999999999998876653 488999999998
Q ss_pred ccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCc
Q psy17365 248 PNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNP 327 (646)
Q Consensus 248 p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p 327 (646)
| +. ...||+... +.| ||.-+++ .+.|++|++.|||||++. |-..+
T Consensus 172 p-Fd---------d~s~D~yTi-----afG-IRN~th~----------------~k~l~EAYRVLKpGGrf~---cLeFs 216 (296)
T KOG1540|consen 172 P-FD---------DDSFDAYTI-----AFG-IRNVTHI----------------QKALREAYRVLKPGGRFS---CLEFS 216 (296)
T ss_pred C-CC---------CCcceeEEE-----ecc-eecCCCH----------------HHHHHHHHHhcCCCcEEE---EEEcc
Confidence 7 21 246887654 223 4544443 267999999999999876 88777
Q ss_pred cccHHHHHHHHHHcc
Q psy17365 328 LEDEAVIQRLIVETQ 342 (646)
Q Consensus 328 ~ENE~VV~~~L~~~~ 342 (646)
.+|.+.+.++...+.
T Consensus 217 kv~~~~l~~fy~~ys 231 (296)
T KOG1540|consen 217 KVENEPLKWFYDQYS 231 (296)
T ss_pred ccccHHHHHHHHhhh
Confidence 777778899988764
No 69
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.91 E-value=3.9e-09 Score=116.80 Aligned_cols=110 Identities=18% Similarity=0.221 Sum_probs=89.2
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
.+++..++++|||+.||.|..|+.+|.. ...|+|+|+++..++.+++|++.+|+.|+.+..+|+..+...
T Consensus 287 ~~~~~~~~~~vlDlYCGvG~f~l~lA~~----------~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~ 356 (432)
T COG2265 287 EWLELAGGERVLDLYCGVGTFGLPLAKR----------VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPA 356 (432)
T ss_pred HHHhhcCCCEEEEeccCCChhhhhhccc----------CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhh
Confidence 4466788999999999999999999854 568999999999999999999999999999999999887543
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
.. ....||.|++|||-+|.+. .+++...+ ++| -+|||++|
T Consensus 357 ~~-------~~~~~d~VvvDPPR~G~~~------------------------~~lk~l~~-~~p-~~IvYVSC 396 (432)
T COG2265 357 WW-------EGYKPDVVVVDPPRAGADR------------------------EVLKQLAK-LKP-KRIVYVSC 396 (432)
T ss_pred cc-------ccCCCCEEEECCCCCCCCH------------------------HHHHHHHh-cCC-CcEEEEeC
Confidence 21 1247999999999888761 33444333 555 46999999
No 70
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.91 E-value=9.7e-09 Score=109.83 Aligned_cols=151 Identities=21% Similarity=0.210 Sum_probs=108.8
Q ss_pred ccccEEEecccc-ccccccc--------CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHH
Q psy17365 155 ATGHISRQEAVS-MIPPLLL--------DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYML 225 (646)
Q Consensus 155 ~~G~i~~Qd~~S-ml~~~~L--------d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L 225 (646)
+.|..+..|.+. |+.+-+. .+.+|++||||+||-|-.|+.+|.. +.-.|+|+|+++..++.|
T Consensus 157 E~G~~f~vD~~Kv~Fsprl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~---------g~~~V~A~diNP~A~~~L 227 (341)
T COG2520 157 ENGCRFKVDVAKVYFSPRLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKK---------GRPKVYAIDINPDAVEYL 227 (341)
T ss_pred cCCEEEEEchHHeEECCCchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhc---------CCceEEEEecCHHHHHHH
Confidence 577777777765 3332221 2567999999999999999999876 233499999999999999
Q ss_pred HHHHHHcCCCC-eEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHH
Q psy17365 226 VHQAKRLNSPC-AIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRI 304 (646)
Q Consensus 226 ~~n~~rlg~~n-i~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~I 304 (646)
++|++.+++.+ +.++++|+..++... ..||+|++.-|-+. ...
T Consensus 228 ~eNi~LN~v~~~v~~i~gD~rev~~~~----------~~aDrIim~~p~~a--------------------------~~f 271 (341)
T COG2520 228 KENIRLNKVEGRVEPILGDAREVAPEL----------GVADRIIMGLPKSA--------------------------HEF 271 (341)
T ss_pred HHHHHhcCccceeeEEeccHHHhhhcc----------ccCCEEEeCCCCcc--------------------------hhh
Confidence 99999999988 789999998875421 46999999877221 256
Q ss_pred HHHHHHhhccCCeEEEEc-CCCCccc--cHHHHHHHHHHccCcEEEeec
Q psy17365 305 VKRGVEMLAVGGKIAYST-CSLNPLE--DEAVIQRLIVETQGAVQLVDV 350 (646)
Q Consensus 305 L~~A~~lLKpGG~LVYST-CSl~p~E--NE~VV~~~L~~~~~~~elv~~ 350 (646)
+..|+++++.||.|.|-+ |.-+..+ .+..+..+..+.+-.++....
T Consensus 272 l~~A~~~~k~~g~iHyy~~~~e~~~~~~~~~~i~~~~~~~~~~~~v~~~ 320 (341)
T COG2520 272 LPLALELLKDGGIIHYYEFVPEDDIEERPEKRIKSAARKGGYKVEVLKV 320 (341)
T ss_pred HHHHHHHhhcCcEEEEEeccchhhcccchHHHHHHHHhhccCcceEEEE
Confidence 889999999999988653 3322221 234555555554333454443
No 71
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.91 E-value=9.4e-09 Score=112.01 Aligned_cols=135 Identities=14% Similarity=0.165 Sum_probs=98.1
Q ss_pred ccccEEEe--cccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc
Q psy17365 155 ATGHISRQ--EAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL 232 (646)
Q Consensus 155 ~~G~i~~Q--d~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl 232 (646)
..|.|+.. |..+.+....+....+.+|||+|||+|..+..++... |...|+++|+|+..++.+++|++.+
T Consensus 204 ~~gVFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~--------P~~~V~~vD~S~~Av~~A~~N~~~n 275 (378)
T PRK15001 204 HANVFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN--------PQAKVVFVDESPMAVASSRLNVETN 275 (378)
T ss_pred cCCccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHHHHc
Confidence 45666665 5556665555555556799999999999999988763 5789999999999999999999888
Q ss_pred CCC---CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHH
Q psy17365 233 NSP---CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGV 309 (646)
Q Consensus 233 g~~---ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~ 309 (646)
+.. ++.+...|+.... ....||.|+|+||..-...+ +. ..-.+++..|.
T Consensus 276 ~~~~~~~v~~~~~D~l~~~-----------~~~~fDlIlsNPPfh~~~~~----------~~-------~ia~~l~~~a~ 327 (378)
T PRK15001 276 MPEALDRCEFMINNALSGV-----------EPFRFNAVLCNPPFHQQHAL----------TD-------NVAWEMFHHAR 327 (378)
T ss_pred CcccCceEEEEEccccccC-----------CCCCEEEEEECcCcccCccC----------CH-------HHHHHHHHHHH
Confidence 643 5677777763210 12479999999996432111 10 12247899999
Q ss_pred HhhccCCeEEEEcCCC
Q psy17365 310 EMLAVGGKIAYSTCSL 325 (646)
Q Consensus 310 ~lLKpGG~LVYSTCSl 325 (646)
+.|+|||.|...+-..
T Consensus 328 ~~LkpGG~L~iV~nr~ 343 (378)
T PRK15001 328 RCLKINGELYIVANRH 343 (378)
T ss_pred HhcccCCEEEEEEecC
Confidence 9999999998775333
No 72
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.91 E-value=5.4e-09 Score=114.15 Aligned_cols=83 Identities=11% Similarity=0.073 Sum_probs=68.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
+..++.+|||+|||.|..++.+|.. ...|+|+|+++..++.+++|++.+++.++.+.++|+..+....
T Consensus 230 ~~~~~~~vLDL~cG~G~~~l~la~~----------~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~-- 297 (374)
T TIGR02085 230 REIPVTQMWDLFCGVGGFGLHCAGP----------DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ-- 297 (374)
T ss_pred HhcCCCEEEEccCCccHHHHHHhhc----------CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc--
Confidence 3346789999999999999988843 3589999999999999999999999999999999987643210
Q ss_pred CCCCCCCCCCCCeeecCCCCCC
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTG 275 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG 275 (646)
...||.|++|||..|
T Consensus 298 -------~~~~D~vi~DPPr~G 312 (374)
T TIGR02085 298 -------MSAPELVLVNPPRRG 312 (374)
T ss_pred -------CCCCCEEEECCCCCC
Confidence 135999999999654
No 73
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=98.90 E-value=5.8e-09 Score=104.27 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=65.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.++.+|||+|||+|+.+..++.. ..+.|+++|+++..++.+++|++.+++.++.++++|+..+...
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr---------~a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~----- 117 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSR---------YAAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ----- 117 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHc---------CCCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh-----
Confidence 46789999999999999865443 2568999999999999999999999998999999998653210
Q ss_pred CCCCCCCCCCeeecCCCC
Q psy17365 256 DGNKVPMKFDRVLCDVPC 273 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PC 273 (646)
....||.|++|||.
T Consensus 118 ----~~~~fDlV~~DPPy 131 (199)
T PRK10909 118 ----PGTPHNVVFVDPPF 131 (199)
T ss_pred ----cCCCceEEEECCCC
Confidence 01359999999994
No 74
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.89 E-value=3.9e-09 Score=115.36 Aligned_cols=101 Identities=19% Similarity=0.213 Sum_probs=81.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
++.+|||++||+|..++.+|... +...|+|||+++..++.+++|++.+++.++.+++.|+..+...
T Consensus 57 ~~~~vLDl~aGsG~~~l~~a~~~--------~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~------ 122 (382)
T PRK04338 57 PRESVLDALSASGIRGIRYALET--------GVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE------ 122 (382)
T ss_pred CCCEEEECCCcccHHHHHHHHHC--------CCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh------
Confidence 45789999999999999988653 2348999999999999999999999999888999998664310
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
...||+|++||| |.+. ..|..|+..+++||.|.+|
T Consensus 123 ----~~~fD~V~lDP~--Gs~~------------------------~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 123 ----ERKFDVVDIDPF--GSPA------------------------PFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred ----cCCCCEEEECCC--CCcH------------------------HHHHHHHHHhcCCCEEEEE
Confidence 146999999998 4331 4678889999997755444
No 75
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.89 E-value=6.4e-09 Score=110.61 Aligned_cols=121 Identities=19% Similarity=0.229 Sum_probs=97.4
Q ss_pred ccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEec-CCCCCc
Q psy17365 170 PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNH-DASVMP 248 (646)
Q Consensus 170 ~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~-Da~~~p 248 (646)
+.+..+++|+.|||=.||+||....+. ++ ...++++|++.+++.-++.|++..|+....+... ||+.+|
T Consensus 190 VNLa~v~~G~~vlDPFcGTGgiLiEag-l~---------G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lp 259 (347)
T COG1041 190 VNLARVKRGELVLDPFCGTGGILIEAG-LM---------GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLP 259 (347)
T ss_pred HHHhccccCCEeecCcCCccHHHHhhh-hc---------CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCC
Confidence 334568999999999999999877654 33 4689999999999999999999999888766666 999887
Q ss_pred cccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 249 NVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 249 ~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
+. ...||.|++|||+--. +......+..+..++|..+.++||+||++||.+-
T Consensus 260 -l~---------~~~vdaIatDPPYGrs-------------t~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 260 -LR---------DNSVDAIATDPPYGRS-------------TKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred -CC---------CCccceEEecCCCCcc-------------cccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 21 1369999999995221 2223344788999999999999999999999864
No 76
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.89 E-value=1.3e-08 Score=108.92 Aligned_cols=105 Identities=17% Similarity=0.268 Sum_probs=83.2
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.++++++++|||+|||+|..|..+++..+ ..|.|+++|+++..++.++++++++|..++.++.+|+...+.
T Consensus 75 ~L~i~~g~~VLDIG~GtG~~a~~LA~~~~-------~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~-- 145 (322)
T PRK13943 75 WVGLDKGMRVLEIGGGTGYNAAVMSRVVG-------EKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVP-- 145 (322)
T ss_pred hcCCCCCCEEEEEeCCccHHHHHHHHhcC-------CCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhccc--
Confidence 35688999999999999999999998763 357899999999999999999999999999999999765431
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
....||+|++++.+. .+....++.|+|||+++..
T Consensus 146 --------~~~~fD~Ii~~~g~~----------------------------~ip~~~~~~LkpgG~Lvv~ 179 (322)
T PRK13943 146 --------EFAPYDVIFVTVGVD----------------------------EVPETWFTQLKEGGRVIVP 179 (322)
T ss_pred --------ccCCccEEEECCchH----------------------------HhHHHHHHhcCCCCEEEEE
Confidence 114699999874310 1233456789999998854
No 77
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.88 E-value=1.2e-08 Score=111.16 Aligned_cols=119 Identities=17% Similarity=0.277 Sum_probs=94.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
...+..|||+|||+|..+.++|... |.+.++|+|++...+..+..++.+.|+.|+.++++||..+....
T Consensus 120 ~~~~p~vLEIGcGsG~~ll~lA~~~--------P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~--- 188 (390)
T PRK14121 120 KNQEKILIEIGFGSGRHLLYQAKNN--------PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELL--- 188 (390)
T ss_pred CCCCCeEEEEcCcccHHHHHHHHhC--------CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhC---
Confidence 4557799999999999999999874 67899999999999999999999999999999999997653221
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL 325 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl 325 (646)
....||.|++.-|+ -|.+-.. .++ .|..+|..+.++|+|||.+...|.+.
T Consensus 189 -----~~~s~D~I~lnFPd-----------PW~KkrH---RRl--v~~~fL~e~~RvLkpGG~l~l~TD~~ 238 (390)
T PRK14121 189 -----PSNSVEKIFVHFPV-----------PWDKKPH---RRV--ISEDFLNEALRVLKPGGTLELRTDSE 238 (390)
T ss_pred -----CCCceeEEEEeCCC-----------Cccccch---hhc--cHHHHHHHHHHHcCCCcEEEEEEECH
Confidence 12579999987652 2211111 122 36789999999999999999998664
No 78
>PLN02476 O-methyltransferase
Probab=98.85 E-value=1.3e-08 Score=106.39 Aligned_cols=148 Identities=11% Similarity=0.150 Sum_probs=106.0
Q ss_pred cchhhhhhhhhhhcccccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCC
Q psy17365 139 TSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVD 218 (646)
Q Consensus 139 ~~~~~~~~~~fl~~~~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis 218 (646)
..+.+..+.++-. ++....+.+.....++...++...+..+|||+|++.|.-|+.+|..+. +.|.|+++|.+
T Consensus 81 ~~~~L~~l~e~a~-~~~~~~~~v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~-------~~G~V~TiE~d 152 (278)
T PLN02476 81 EPKILRQLREETS-KMRGSQMQVSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLP-------ESGCLVACERD 152 (278)
T ss_pred CCHHHHHHHHHHH-hccCCccccCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCC-------CCCEEEEEECC
Confidence 3445555544321 111123344444555556666777788999999999999999998874 57899999999
Q ss_pred HHHHHHHHHHHHHcCCC-CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhh
Q psy17365 219 NNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNL 297 (646)
Q Consensus 219 ~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l 297 (646)
+++++.+++|+++.|+. +|.++.+||........ ..+ ....||.|++|++
T Consensus 153 ~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~--~~~--~~~~FD~VFIDa~------------------------- 203 (278)
T PLN02476 153 SNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMI--QNG--EGSSYDFAFVDAD------------------------- 203 (278)
T ss_pred HHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHH--hcc--cCCCCCEEEECCC-------------------------
Confidence 99999999999999986 79999999976432110 011 1247999999987
Q ss_pred HHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 298 HGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 298 ~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
.......+..++++|++||.||.--.
T Consensus 204 K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 204 KRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred HHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 02234678889999999999996544
No 79
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.85 E-value=5.4e-09 Score=113.85 Aligned_cols=104 Identities=18% Similarity=0.165 Sum_probs=83.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+-+|||++||+|.-++.++.... +...|++||+++..++.+++|++.++..++.+++.|+..+....
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~-------ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~------ 111 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIE-------GVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR------ 111 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCC-------CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh------
Confidence 35899999999999998886532 34689999999999999999999999989999999997653211
Q ss_pred CCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 258 NKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
..+||+|.+||+ |+. . ..|+.|++.++.||.| |.|||
T Consensus 112 ---~~~fDvIdlDPf--Gs~------~------------------~fld~al~~~~~~glL-~vTaT 148 (374)
T TIGR00308 112 ---NRKFHVIDIDPF--GTP------A------------------PFVDSAIQASAERGLL-LVTAT 148 (374)
T ss_pred ---CCCCCEEEeCCC--CCc------H------------------HHHHHHHHhcccCCEE-EEEec
Confidence 146999999997 221 1 4688999999998855 55665
No 80
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=98.85 E-value=3.3e-09 Score=104.66 Aligned_cols=109 Identities=18% Similarity=0.158 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~~~ 255 (646)
+|.+|||+|||+|+....++++ +...|+.+|.|++.+..+++|++.++..+ +.+++.|+..+.....
T Consensus 42 ~g~~vLDLFaGSGalGlEALSR---------GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~--- 109 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSR---------GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA--- 109 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHT---------T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHH---
T ss_pred CCCeEEEcCCccCccHHHHHhc---------CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhc---
Confidence 5889999999999999877655 57799999999999999999999999886 8889999765432110
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHH--HhhccCCeEEEEc
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGV--EMLAVGGKIAYST 322 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~--~lLKpGG~LVYST 322 (646)
.....||.|++|||+-..- . . ..+|.... .+|+++|.||+-+
T Consensus 110 ---~~~~~fDiIflDPPY~~~~----------------~--~----~~~l~~l~~~~~l~~~~~ii~E~ 153 (183)
T PF03602_consen 110 ---KKGEKFDIIFLDPPYAKGL----------------Y--Y----EELLELLAENNLLNEDGLIIIEH 153 (183)
T ss_dssp ---HCTS-EEEEEE--STTSCH----------------H--H----HHHHHHHHHTTSEEEEEEEEEEE
T ss_pred ---ccCCCceEEEECCCcccch----------------H--H----HHHHHHHHHCCCCCCCEEEEEEe
Confidence 1136899999999943211 0 0 12333333 7899999888653
No 81
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.84 E-value=6.9e-09 Score=112.43 Aligned_cols=95 Identities=21% Similarity=0.238 Sum_probs=62.8
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
++++.++ .|||++||.|..|+.||.. ...|+|+|+++..++.+++|++.+++.|+.++++++..+....
T Consensus 192 ~l~~~~~-~vlDlycG~G~fsl~la~~----------~~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~ 260 (352)
T PF05958_consen 192 WLDLSKG-DVLDLYCGVGTFSLPLAKK----------AKKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKAL 260 (352)
T ss_dssp HCTT-TT-EEEEES-TTTCCHHHHHCC----------SSEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHH
T ss_pred HhhcCCC-cEEEEeecCCHHHHHHHhh----------CCeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHH
Confidence 4566666 8999999999999999864 4689999999999999999999999999999998886653211
Q ss_pred ccC-----CCC-CCCCCCCCeeecCCCCCCCc
Q psy17365 252 YTD-----ADG-NKVPMKFDRVLCDVPCTGDG 277 (646)
Q Consensus 252 ~~~-----~~g-~~~~~~FD~IL~D~PCSG~G 277 (646)
... ..+ ......+|.||+|||-+|.+
T Consensus 261 ~~~r~~~~~~~~~~~~~~~d~vilDPPR~G~~ 292 (352)
T PF05958_consen 261 AKAREFNRLKGIDLKSFKFDAVILDPPRAGLD 292 (352)
T ss_dssp CCS-GGTTGGGS-GGCTTESEEEE---TT-SC
T ss_pred HhhHHHHhhhhhhhhhcCCCEEEEcCCCCCch
Confidence 100 000 00123689999999999876
No 82
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.84 E-value=4.7e-08 Score=100.92 Aligned_cols=119 Identities=18% Similarity=0.187 Sum_probs=84.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCcccccc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYT 253 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~ 253 (646)
+.++.+|||+|||+|..+..++.. +.+.|+|+|+|+.+++.+++|+++.++. .+.+..+|
T Consensus 117 ~~~~~~VLDiGcGsG~l~i~~~~~---------g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~---------- 177 (250)
T PRK00517 117 VLPGKTVLDVGCGSGILAIAAAKL---------GAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGD---------- 177 (250)
T ss_pred cCCCCEEEEeCCcHHHHHHHHHHc---------CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCC----------
Confidence 468899999999999877765543 3457999999999999999999988863 22221111
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHH
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAV 333 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~V 333 (646)
..||.|+++.. ......++..+.++|||||+++.|.... +..+-
T Consensus 178 --------~~fD~Vvani~-------------------------~~~~~~l~~~~~~~LkpgG~lilsgi~~---~~~~~ 221 (250)
T PRK00517 178 --------LKADVIVANIL-------------------------ANPLLELAPDLARLLKPGGRLILSGILE---EQADE 221 (250)
T ss_pred --------CCcCEEEEcCc-------------------------HHHHHHHHHHHHHhcCCCcEEEEEECcH---hhHHH
Confidence 26999998632 1123467889999999999999885433 34455
Q ss_pred HHHHHHHccCcEEEeec
Q psy17365 334 IQRLIVETQGAVQLVDV 350 (646)
Q Consensus 334 V~~~L~~~~~~~elv~~ 350 (646)
+...+.+++ ++++..
T Consensus 222 v~~~l~~~G--f~~~~~ 236 (250)
T PRK00517 222 VLEAYEEAG--FTLDEV 236 (250)
T ss_pred HHHHHHHCC--CEEEEE
Confidence 666777765 555543
No 83
>PLN02244 tocopherol O-methyltransferase
Probab=98.84 E-value=3.2e-08 Score=106.71 Aligned_cols=108 Identities=17% Similarity=0.134 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~~ 254 (646)
+++.+|||+|||+|+.+..+++.. .+.|+++|+++..++.++++++..|.. ++.+..+|+..++.
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~---------g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~----- 182 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY---------GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPF----- 182 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc---------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCC-----
Confidence 678899999999999999998763 358999999999999999998888874 68999999977642
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
....||.|++- +++.+-++ ..+++.++.++|||||+|+.+++.
T Consensus 183 -----~~~~FD~V~s~------~~~~h~~d----------------~~~~l~e~~rvLkpGG~lvi~~~~ 225 (340)
T PLN02244 183 -----EDGQFDLVWSM------ESGEHMPD----------------KRKFVQELARVAAPGGRIIIVTWC 225 (340)
T ss_pred -----CCCCccEEEEC------CchhccCC----------------HHHHHHHHHHHcCCCcEEEEEEec
Confidence 12579999873 11222222 136789999999999999988753
No 84
>KOG2915|consensus
Probab=98.83 E-value=3.5e-08 Score=100.99 Aligned_cols=142 Identities=17% Similarity=0.235 Sum_probs=108.9
Q ss_pred cccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q psy17365 154 NATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN 233 (646)
Q Consensus 154 ~~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg 233 (646)
+.+-.+|.-|.+ +....|++.||.+||..+.|+||.+..++..++ |+|.|+..|.+..|.+.+.+..+..|
T Consensus 84 hRTQI~Yt~Dia--~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~-------ptGhl~tfefH~~Ra~ka~eeFr~hg 154 (314)
T KOG2915|consen 84 HRTQILYTPDIA--MILSMLEIRPGSVVLESGTGSGSLSHAIARAVA-------PTGHLYTFEFHETRAEKALEEFREHG 154 (314)
T ss_pred CcceEEecccHH--HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhC-------cCcceEEEEecHHHHHHHHHHHHHhC
Confidence 345555665543 344578999999999999999999999999986 89999999999999999999999999
Q ss_pred CC-CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhh
Q psy17365 234 SP-CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEML 312 (646)
Q Consensus 234 ~~-ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lL 312 (646)
+. |+.+++-|...-... .....+|.|++|.| +|. ..+-+|+++|
T Consensus 155 i~~~vt~~hrDVc~~GF~--------~ks~~aDaVFLDlP---------aPw------------------~AiPha~~~l 199 (314)
T KOG2915|consen 155 IGDNVTVTHRDVCGSGFL--------IKSLKADAVFLDLP---------APW------------------EAIPHAAKIL 199 (314)
T ss_pred CCcceEEEEeecccCCcc--------ccccccceEEEcCC---------Chh------------------hhhhhhHHHh
Confidence 75 688888887642211 11367999999999 554 3577888899
Q ss_pred ccCCeEEEEcCCCCcc-ccHHHHHHHHHHcc
Q psy17365 313 AVGGKIAYSTCSLNPL-EDEAVIQRLIVETQ 342 (646)
Q Consensus 313 KpGG~LVYSTCSl~p~-ENE~VV~~~L~~~~ 342 (646)
|.+|.-+ |||+|- |.-+--.++|++++
T Consensus 200 k~~g~r~---csFSPCIEQvqrtce~l~~~g 227 (314)
T KOG2915|consen 200 KDEGGRL---CSFSPCIEQVQRTCEALRSLG 227 (314)
T ss_pred hhcCceE---EeccHHHHHHHHHHHHHHhCC
Confidence 9988533 888874 44445556667765
No 85
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=4e-08 Score=103.27 Aligned_cols=136 Identities=14% Similarity=0.148 Sum_probs=99.0
Q ss_pred ccccccccC--CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEec
Q psy17365 166 SMIPPLLLD--VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNH 242 (646)
Q Consensus 166 Sml~~~~Ld--~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~ 242 (646)
..+...+|+ .++|.+|||++||+|-.+..++.+ +...|+|+|+|+..++..++|+.+++++. +.....
T Consensus 149 T~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL---------GA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~ 219 (300)
T COG2264 149 TSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL---------GAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGF 219 (300)
T ss_pred HHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc---------CCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccc
Confidence 334444443 569999999999999998887765 57899999999999999999999999875 111111
Q ss_pred CCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 243 DASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 243 Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
+.... .....||.|+++. |+..-..+...+..+|||||+++.|=
T Consensus 220 ~~~~~-----------~~~~~~DvIVANI-------------------------LA~vl~~La~~~~~~lkpgg~lIlSG 263 (300)
T COG2264 220 LLLEV-----------PENGPFDVIVANI-------------------------LAEVLVELAPDIKRLLKPGGRLILSG 263 (300)
T ss_pred cchhh-----------cccCcccEEEehh-------------------------hHHHHHHHHHHHHHHcCCCceEEEEe
Confidence 11111 1225899999852 45566688999999999999999984
Q ss_pred CCCCccccHHHHHHHHHHccCcEEEeecc
Q psy17365 323 CSLNPLEDEAVIQRLIVETQGAVQLVDVS 351 (646)
Q Consensus 323 CSl~p~ENE~VV~~~L~~~~~~~elv~~~ 351 (646)
+.... +..|.+++.+.+ |+++++.
T Consensus 264 --Il~~q-~~~V~~a~~~~g--f~v~~~~ 287 (300)
T COG2264 264 --ILEDQ-AESVAEAYEQAG--FEVVEVL 287 (300)
T ss_pred --ehHhH-HHHHHHHHHhCC--CeEeEEE
Confidence 44444 666777776654 6777654
No 86
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.82 E-value=4.5e-08 Score=104.78 Aligned_cols=107 Identities=16% Similarity=0.096 Sum_probs=81.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLY 252 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~ 252 (646)
.+.+|.+|||+|||.|..+..++.. .+.|+++|++++.++.++.++...+. .++.++++|+..++.
T Consensus 128 ~~~~g~~ILDIGCG~G~~s~~La~~----------g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~--- 194 (322)
T PLN02396 128 KPFEGLKFIDIGCGGGLLSEPLARM----------GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLAD--- 194 (322)
T ss_pred cCCCCCEEEEeeCCCCHHHHHHHHc----------CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhh---
Confidence 3567889999999999998877742 45899999999999999887665443 478899999877642
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
....||.|++- +++.+-++. ..+|....++|||||.++.+|
T Consensus 195 -------~~~~FD~Vi~~------~vLeHv~d~----------------~~~L~~l~r~LkPGG~liist 235 (322)
T PLN02396 195 -------EGRKFDAVLSL------EVIEHVANP----------------AEFCKSLSALTIPNGATVLST 235 (322)
T ss_pred -------ccCCCCEEEEh------hHHHhcCCH----------------HHHHHHHHHHcCCCcEEEEEE
Confidence 12579999972 233332221 367888999999999999886
No 87
>PRK08317 hypothetical protein; Provisional
Probab=98.82 E-value=6.7e-08 Score=96.99 Aligned_cols=129 Identities=23% Similarity=0.319 Sum_probs=92.1
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.+++.++.+|||+|||+|..+..++..++ +.+.++++|+++.++..++++... ...++.+...|+..++.
T Consensus 14 ~~~~~~~~~vLdiG~G~G~~~~~~a~~~~-------~~~~v~~~d~~~~~~~~a~~~~~~-~~~~~~~~~~d~~~~~~-- 83 (241)
T PRK08317 14 LLAVQPGDRVLDVGCGPGNDARELARRVG-------PEGRVVGIDRSEAMLALAKERAAG-LGPNVEFVRGDADGLPF-- 83 (241)
T ss_pred HcCCCCCCEEEEeCCCCCHHHHHHHHhcC-------CCcEEEEEeCCHHHHHHHHHHhhC-CCCceEEEecccccCCC--
Confidence 45678899999999999999999998763 467999999999999988877332 34578888888876541
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCC----c
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLN----P 327 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~----p 327 (646)
....||.|+++.. +...++ ...++.++.++|||||.|+.+.+... .
T Consensus 84 --------~~~~~D~v~~~~~------~~~~~~----------------~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~ 133 (241)
T PRK08317 84 --------PDGSFDAVRSDRV------LQHLED----------------PARALAEIARVLRPGGRVVVLDTDWDTLVWH 133 (241)
T ss_pred --------CCCCceEEEEech------hhccCC----------------HHHHHHHHHHHhcCCcEEEEEecCCCceeec
Confidence 1247999997532 111111 24678999999999999998876432 2
Q ss_pred cccHHHHHHHHHH
Q psy17365 328 LEDEAVIQRLIVE 340 (646)
Q Consensus 328 ~ENE~VV~~~L~~ 340 (646)
..+...+..++..
T Consensus 134 ~~~~~~~~~~~~~ 146 (241)
T PRK08317 134 SGDRALMRKILNF 146 (241)
T ss_pred CCChHHHHHHHHH
Confidence 2344455555543
No 88
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.82 E-value=3.3e-08 Score=102.16 Aligned_cols=108 Identities=15% Similarity=0.152 Sum_probs=81.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~~ 254 (646)
.++.+|||+|||+|..+..+++. ...|+++|+++..++.++++++..|. .++.++++|+..++...
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~----------g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~--- 109 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAEL----------GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHL--- 109 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHc----------CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhc---
Confidence 35679999999999999988864 35899999999999999999998886 47889999987653211
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
...||.|++... +..-++ ...+|..+.++|||||+|+....+
T Consensus 110 ------~~~fD~V~~~~v------l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~n 151 (255)
T PRK11036 110 ------ETPVDLILFHAV------LEWVAD----------------PKSVLQTLWSVLRPGGALSLMFYN 151 (255)
T ss_pred ------CCCCCEEEehhH------HHhhCC----------------HHHHHHHHHHHcCCCeEEEEEEEC
Confidence 257999997533 111011 136789999999999999765333
No 89
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.80 E-value=2.1e-08 Score=102.73 Aligned_cols=116 Identities=16% Similarity=0.202 Sum_probs=89.3
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNV 250 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~ 250 (646)
++...+..+|||+|+|.|.-|+.++..+. +.|.|+++|+++++++.+++|+++.|+. ++.++.+|+......
T Consensus 63 l~~~~~~~~vLEiGt~~G~s~l~la~~~~-------~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~ 135 (234)
T PLN02781 63 LVKIMNAKNTLEIGVFTGYSLLTTALALP-------EDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQ 135 (234)
T ss_pred HHHHhCCCEEEEecCcccHHHHHHHHhCC-------CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHH
Confidence 44556677999999999999999988764 5789999999999999999999999985 589999999764211
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
.. .. .....||.|++|++ . ......+..++++|+|||.||...+
T Consensus 136 l~--~~--~~~~~fD~VfiDa~---------k----------------~~y~~~~~~~~~ll~~GG~ii~dn~ 179 (234)
T PLN02781 136 LL--NN--DPKPEFDFAFVDAD---------K----------------PNYVHFHEQLLKLVKVGGIIAFDNT 179 (234)
T ss_pred HH--hC--CCCCCCCEEEECCC---------H----------------HHHHHHHHHHHHhcCCCeEEEEEcC
Confidence 10 00 00247999999975 0 1223578889999999999996543
No 90
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=3e-08 Score=98.84 Aligned_cols=133 Identities=18% Similarity=0.146 Sum_probs=92.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
+++|+.|+|+||||||++..++..++ +++.|+|+|+.+-. .+++|.++.+|++.-.....-
T Consensus 43 ~~~~~~ViDLGAAPGgWsQva~~~~~-------~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l- 103 (205)
T COG0293 43 FKPGMVVVDLGAAPGGWSQVAAKKLG-------AGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKL- 103 (205)
T ss_pred ecCCCEEEEcCCCCCcHHHHHHHHhC-------CCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHH-
Confidence 36799999999999999999998875 57789999998854 356789999998764321100
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHH
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVI 334 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV 334 (646)
........+|.|++|+----+| .|+... .....+-...+.-|...|++||.+| |.....++++.+
T Consensus 104 -~~~l~~~~~DvV~sD~ap~~~g----------~~~~Dh-~r~~~L~~~a~~~a~~vL~~~G~fv---~K~fqg~~~~~~ 168 (205)
T COG0293 104 -LEALGGAPVDVVLSDMAPNTSG----------NRSVDH-ARSMYLCELALEFALEVLKPGGSFV---AKVFQGEDFEDL 168 (205)
T ss_pred -HHHcCCCCcceEEecCCCCcCC----------CccccH-HHHHHHHHHHHHHHHHeeCCCCeEE---EEEEeCCCHHHH
Confidence 0001123479999996433333 333222 2233444566778889999999999 667778888888
Q ss_pred HHHHHHc
Q psy17365 335 QRLIVET 341 (646)
Q Consensus 335 ~~~L~~~ 341 (646)
-+.++++
T Consensus 169 l~~~~~~ 175 (205)
T COG0293 169 LKALRRL 175 (205)
T ss_pred HHHHHHh
Confidence 7778765
No 91
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.79 E-value=7.5e-08 Score=101.53 Aligned_cols=124 Identities=11% Similarity=0.082 Sum_probs=87.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCCCcccccc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASVMPNVLYT 253 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~ 253 (646)
..+|.+|||+|||+|..+..++.. +.+.|+|+|+|+.+++.+++|+.+.++.. +.+...+....
T Consensus 157 ~~~g~~VLDvGcGsG~lai~aa~~---------g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~------ 221 (288)
T TIGR00406 157 DLKDKNVIDVGCGSGILSIAALKL---------GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP------ 221 (288)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHc---------CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc------
Confidence 457899999999999988776643 35689999999999999999999988764 44444442111
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHH
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAV 333 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~V 333 (646)
....||.|+++..+ .....++..+.++|||||+|+.|... .+....
T Consensus 222 ------~~~~fDlVvan~~~-------------------------~~l~~ll~~~~~~LkpgG~li~sgi~---~~~~~~ 267 (288)
T TIGR00406 222 ------IEGKADVIVANILA-------------------------EVIKELYPQFSRLVKPGGWLILSGIL---ETQAQS 267 (288)
T ss_pred ------cCCCceEEEEecCH-------------------------HHHHHHHHHHHHHcCCCcEEEEEeCc---HhHHHH
Confidence 12479999987420 11236788999999999999988642 234445
Q ss_pred HHHHHHHccCcEEEeec
Q psy17365 334 IQRLIVETQGAVQLVDV 350 (646)
Q Consensus 334 V~~~L~~~~~~~elv~~ 350 (646)
|.++++++ |+++.+
T Consensus 268 v~~~~~~~---f~~~~~ 281 (288)
T TIGR00406 268 VCDAYEQG---FTVVEI 281 (288)
T ss_pred HHHHHHcc---CceeeE
Confidence 55556542 555543
No 92
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.77 E-value=6.3e-08 Score=101.38 Aligned_cols=153 Identities=18% Similarity=0.170 Sum_probs=113.0
Q ss_pred cccccEEE--ecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy17365 154 NATGHISR--QEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR 231 (646)
Q Consensus 154 ~~~G~i~~--Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~r 231 (646)
+..|.|+. =|..|.+...-|...++.+|||+|||-|-..+.+|+.. |...|+-+|+|...++..+.|++.
T Consensus 133 t~pGVFS~~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~--------p~~~vtmvDvn~~Av~~ar~Nl~~ 204 (300)
T COG2813 133 TLPGVFSRDKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS--------PQAKLTLVDVNARAVESARKNLAA 204 (300)
T ss_pred eCCCCCcCCCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC--------CCCeEEEEecCHHHHHHHHHhHHH
Confidence 45677776 46678888878888877799999999999999999873 678999999999999999999999
Q ss_pred cCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHh
Q psy17365 232 LNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEM 311 (646)
Q Consensus 232 lg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~l 311 (646)
++..+..+...|...- . ..+||.|+++||-. .| ....+.+-.+|+..|.+.
T Consensus 205 N~~~~~~v~~s~~~~~---------v---~~kfd~IisNPPfh-~G----------------~~v~~~~~~~~i~~A~~~ 255 (300)
T COG2813 205 NGVENTEVWASNLYEP---------V---EGKFDLIISNPPFH-AG----------------KAVVHSLAQEIIAAAARH 255 (300)
T ss_pred cCCCccEEEEeccccc---------c---cccccEEEeCCCcc-CC----------------cchhHHHHHHHHHHHHHh
Confidence 9998864444443221 1 13899999999933 22 122333445899999999
Q ss_pred hccCCeEEEEcCCCCccccHHHHHHHHHHccCcEEEee
Q psy17365 312 LAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVD 349 (646)
Q Consensus 312 LKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv~ 349 (646)
|++||.|-...-..-|.|. . |++.-+.++.+.
T Consensus 256 L~~gGeL~iVan~~l~y~~--~----L~~~Fg~v~~la 287 (300)
T COG2813 256 LKPGGELWIVANRHLPYEK--K----LKELFGNVEVLA 287 (300)
T ss_pred hccCCEEEEEEcCCCChHH--H----HHHhcCCEEEEE
Confidence 9999988877655555443 3 444434455553
No 93
>PLN02672 methionine S-methyltransferase
Probab=98.77 E-value=4.8e-08 Score=117.71 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=104.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC----------------CCeEEEe
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS----------------PCAIITN 241 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~----------------~ni~v~~ 241 (646)
+.+|||+|||+|..+..++... +.+.|+|+|+|+..++.+++|+++++. .++.+++
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~--------~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~ 190 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKW--------LPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYE 190 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEE
Confidence 4689999999999999998874 457999999999999999999998653 3588889
Q ss_pred cCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCccccc-CccccccCCc------------c-h---hhhhHHHHHHH
Q psy17365 242 HDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRK-NPDIWTKWTP------------S-N---GNNLHGIQYRI 304 (646)
Q Consensus 242 ~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk-~pd~~~~w~~------------~-~---~~~l~~lQ~~I 304 (646)
+|...... ....+||+|+++||+-..+-+.. .|++. .+.| - . ...-..+.++|
T Consensus 191 sDl~~~~~---------~~~~~fDlIVSNPPYI~~~e~~~l~~eV~-~~ep~~~~~~~~p~~AL~g~~~g~dGL~~yr~i 260 (1082)
T PLN02672 191 SDLLGYCR---------DNNIELDRIVGCIPQILNPNPEAMSKLVT-ENASEEFLYSLSNYCALQGFVEDQFGLGLIARA 260 (1082)
T ss_pred Cchhhhcc---------ccCCceEEEEECCCcCCCcchhhcChhhh-hccccccccccCccccccCCCCCCcHHHHHHHH
Confidence 88754321 00126999999999887775432 22221 1111 1 1 13445677899
Q ss_pred HHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHcc
Q psy17365 305 VKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 305 L~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~ 342 (646)
+..|.++|+|||.|+ |-+.....++|.++++++.+
T Consensus 261 ~~~a~~~L~pgG~l~---lEiG~~q~~~v~~~l~~~~g 295 (1082)
T PLN02672 261 VEEGISVIKPMGIMI---FNMGGRPGQAVCERLFERRG 295 (1082)
T ss_pred HHHHHHhccCCCEEE---EEECccHHHHHHHHHHHHCC
Confidence 999999999999998 44555566666656777654
No 94
>KOG2904|consensus
Probab=98.76 E-value=7.9e-08 Score=98.52 Aligned_cols=147 Identities=16% Similarity=0.196 Sum_probs=102.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~~~ 255 (646)
.+..+||+|||+|..++.++..+ +.++|+|+|.++..+.++.+|++|+++.+ +.+++.+.+.-.....
T Consensus 148 ~~~~ildlgtGSGaIslsll~~L--------~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~--- 216 (328)
T KOG2904|consen 148 KHTHILDLGTGSGAISLSLLHGL--------PQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEH--- 216 (328)
T ss_pred ccceEEEecCCccHHHHHHHhcC--------CCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccccccccccc---
Confidence 35589999999999999988776 58999999999999999999999999875 6677665432100000
Q ss_pred CCCCCCCCCCeeecCCCCCCCccccc-CccccccCCcc----hhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcccc
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRK-NPDIWTKWTPS----NGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk-~pd~~~~w~~~----~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~EN 330 (646)
....++.|.++++||+--.--++- +|++. .+.+. ...+.-..-..+..-|-++|+|||.+++++--. .+.
T Consensus 217 --~l~~~~~dllvsNPPYI~~dD~~~l~~eV~-~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~~~~--~~~ 291 (328)
T KOG2904|consen 217 --PLLEGKIDLLVSNPPYIRKDDNRQLKPEVR-LYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLELVER--KEH 291 (328)
T ss_pred --ccccCceeEEecCCCcccccchhhcCchhe-ecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEeccc--ccC
Confidence 011267999999999866544332 34442 22222 223444566678888999999999999986433 444
Q ss_pred HHHHHHHHH
Q psy17365 331 EAVIQRLIV 339 (646)
Q Consensus 331 E~VV~~~L~ 339 (646)
...|+..+.
T Consensus 292 ~~lv~~~m~ 300 (328)
T KOG2904|consen 292 SYLVRIWMI 300 (328)
T ss_pred cHHHHHHHH
Confidence 556666554
No 95
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.76 E-value=2.5e-08 Score=108.45 Aligned_cols=88 Identities=14% Similarity=0.132 Sum_probs=66.8
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC---
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA--- 255 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~--- 255 (646)
.+|||+|||+|+.|..++.. ...|+|+|+++..++.+++|++.+|+.|+.+.++|+..+........
T Consensus 208 ~~vLDl~~G~G~~sl~la~~----------~~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~ 277 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARN----------FRRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFN 277 (362)
T ss_pred CeEEEEeccccHHHHHHHhh----------CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccc
Confidence 57999999999999987754 35899999999999999999999999999999999976432110000
Q ss_pred --CCC-CCCCCCCeeecCCCCCCC
Q psy17365 256 --DGN-KVPMKFDRVLCDVPCTGD 276 (646)
Q Consensus 256 --~g~-~~~~~FD~IL~D~PCSG~ 276 (646)
.+. ....+||.|++|||.+|.
T Consensus 278 ~~~~~~~~~~~~D~v~lDPPR~G~ 301 (362)
T PRK05031 278 RLKGIDLKSYNFSTIFVDPPRAGL 301 (362)
T ss_pred ccccccccCCCCCEEEECCCCCCC
Confidence 000 001259999999997653
No 96
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.75 E-value=1e-07 Score=98.18 Aligned_cols=110 Identities=15% Similarity=0.141 Sum_probs=84.0
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCcccccc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYT 253 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~ 253 (646)
+.++.+|||+|||+|..+..+++.+. . +.+.|+|+|+|+..++.+++++.+.+.. ++.++++|+..++.
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~---~---~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~---- 123 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIH---H---DNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI---- 123 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcC---C---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC----
Confidence 35788999999999999988887542 1 5689999999999999999999988765 68899999876541
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
..+|.|++.-. +...+ ...+..++.++.+.|||||.|+.+.
T Consensus 124 --------~~~D~vv~~~~------l~~l~--------------~~~~~~~l~~i~~~LkpGG~l~l~e 164 (247)
T PRK15451 124 --------ENASMVVLNFT------LQFLE--------------PSERQALLDKIYQGLNPGGALVLSE 164 (247)
T ss_pred --------CCCCEEehhhH------HHhCC--------------HHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 34888876311 11000 0123578999999999999999886
No 97
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.75 E-value=9.5e-09 Score=100.50 Aligned_cols=141 Identities=23% Similarity=0.204 Sum_probs=80.7
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc-c
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL-Y 252 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~-~ 252 (646)
++.++.+|||+||||||+|..+++..+ +.+.|+|+|+.+. ...+++..+.+|........ .
T Consensus 20 ~~~~~~~vlDlG~aPGGws~~~~~~~~-------~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i 81 (181)
T PF01728_consen 20 KPGKGFTVLDLGAAPGGWSQVLLQRGG-------PAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDI 81 (181)
T ss_dssp -TTTTEEEEEET-TTSHHHHHHHTSTT-------TEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHG
T ss_pred CcccccEEEEcCCcccceeeeeeeccc-------ccceEEEEecccc-----------ccccceeeeecccchhhHHHhh
Confidence 344568999999999999999987752 4789999999876 13356666677765431111 0
Q ss_pred cCCCCCCCCCCCCeeecCC--CCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcccc
Q psy17365 253 TDADGNKVPMKFDRVLCDV--PCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~--PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~EN 330 (646)
...-. .....||.|++|. +|+|... .+......+....|.-|.++|++||.+|--+-. ..+.
T Consensus 82 ~~~~~-~~~~~~dlv~~D~~~~~~g~~~-------------~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~--~~~~ 145 (181)
T PF01728_consen 82 RKLLP-ESGEKFDLVLSDMAPNVSGDRN-------------IDEFISIRLILSQLLLALELLKPGGTFVIKVFK--GPEI 145 (181)
T ss_dssp GGSHG-TTTCSESEEEE-------SSHH-------------SSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESS--STTS
T ss_pred hhhcc-ccccCcceeccccccCCCCchh-------------hHHHHHHHHHHHHHHHHHhhhcCCCEEEEEecc--CccH
Confidence 00000 0125899999998 5555321 112233466667777888999999998844322 2233
Q ss_pred HHHHHHHHHHccCcEEEee
Q psy17365 331 EAVIQRLIVETQGAVQLVD 349 (646)
Q Consensus 331 E~VV~~~L~~~~~~~elv~ 349 (646)
+.++..+-..+. .+.++.
T Consensus 146 ~~~~~~l~~~F~-~v~~~K 163 (181)
T PF01728_consen 146 EELIYLLKRCFS-KVKIVK 163 (181)
T ss_dssp HHHHHHHHHHHH-HEEEEE
T ss_pred HHHHHHHHhCCe-EEEEEE
Confidence 444444333332 355554
No 98
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.74 E-value=5.4e-08 Score=102.78 Aligned_cols=124 Identities=20% Similarity=0.223 Sum_probs=87.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
..+|.+|||++||+|-.+..++.+ +.+.|+|+|+|+..++.+++|++.+|+.....+. .....+
T Consensus 159 ~~~g~~vLDvG~GSGILaiaA~kl---------GA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~-~~~~~~------ 222 (295)
T PF06325_consen 159 VKPGKRVLDVGCGSGILAIAAAKL---------GAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS-LSEDLV------ 222 (295)
T ss_dssp SSTTSEEEEES-TTSHHHHHHHHT---------TBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES-CTSCTC------
T ss_pred ccCCCEEEEeCCcHHHHHHHHHHc---------CCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE-Eecccc------
Confidence 578999999999999988776654 4779999999999999999999999987633222 211111
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHH
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVI 334 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV 334 (646)
..+||.|+++- +......++....++|+|||+|+.| -+..++.+.|+
T Consensus 223 ------~~~~dlvvANI-------------------------~~~vL~~l~~~~~~~l~~~G~lIlS--GIl~~~~~~v~ 269 (295)
T PF06325_consen 223 ------EGKFDLVVANI-------------------------LADVLLELAPDIASLLKPGGYLILS--GILEEQEDEVI 269 (295)
T ss_dssp ------CS-EEEEEEES--------------------------HHHHHHHHHHCHHHEEEEEEEEEE--EEEGGGHHHHH
T ss_pred ------cccCCEEEECC-------------------------CHHHHHHHHHHHHHhhCCCCEEEEc--cccHHHHHHHH
Confidence 25799999852 2344457788888999999999976 45555555555
Q ss_pred HHHHHHccCcEEEeecc
Q psy17365 335 QRLIVETQGAVQLVDVS 351 (646)
Q Consensus 335 ~~~L~~~~~~~elv~~~ 351 (646)
+++++ + ++++...
T Consensus 270 -~a~~~-g--~~~~~~~ 282 (295)
T PF06325_consen 270 -EAYKQ-G--FELVEER 282 (295)
T ss_dssp -HHHHT-T--EEEEEEE
T ss_pred -HHHHC-C--CEEEEEE
Confidence 45554 3 7776543
No 99
>PHA03412 putative methyltransferase; Provisional
Probab=98.74 E-value=5.4e-08 Score=99.19 Aligned_cols=112 Identities=21% Similarity=0.280 Sum_probs=80.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+|||+|||+|..+..++..+... +...|+|+|+++..++.+++|+ .++.+.+.|+...+.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~-----~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D~~~~~~------- 111 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYA-----KPREIVCVELNHTYYKLGKRIV-----PEATWINADALTTEF------- 111 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccC-----CCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcchhcccc-------
Confidence 46799999999999999998865311 2468999999999999998774 347788888865321
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV 319 (646)
..+||.|+++||..-... .+ + .....-..+-..++..|.+++++|+.|+
T Consensus 112 ----~~~FDlIIsNPPY~~~~~----~d----~--~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 112 ----DTLFDMAISNPPFGKIKT----SD----F--KGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred ----cCCccEEEECCCCCCccc----cc----c--CCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 247999999999776431 11 1 1111123455679999999888877655
No 100
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.74 E-value=1e-07 Score=94.96 Aligned_cols=108 Identities=15% Similarity=0.016 Sum_probs=81.1
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+...++.+|||+|||+|..+..+|+. ...|+|+|+|+..++.++++++..++.++.+...|...++.
T Consensus 26 l~~~~~~~vLDiGcG~G~~a~~La~~----------g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~--- 92 (197)
T PRK11207 26 VKVVKPGKTLDLGCGNGRNSLYLAAN----------GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTF--- 92 (197)
T ss_pred cccCCCCcEEEECCCCCHHHHHHHHC----------CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCc---
Confidence 44556789999999999999998864 24899999999999999999988888888888888765421
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
...||.|++-.. +.. +.+ .....++..+.++|||||.+++.
T Consensus 93 --------~~~fD~I~~~~~------~~~-------~~~-------~~~~~~l~~i~~~LkpgG~~~~~ 133 (197)
T PRK11207 93 --------DGEYDFILSTVV------LMF-------LEA-------KTIPGLIANMQRCTKPGGYNLIV 133 (197)
T ss_pred --------CCCcCEEEEecc------hhh-------CCH-------HHHHHHHHHHHHHcCCCcEEEEE
Confidence 146999996321 110 000 12347899999999999996554
No 101
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=98.73 E-value=1.2e-07 Score=97.75 Aligned_cols=105 Identities=20% Similarity=0.364 Sum_probs=79.9
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.+.+.++.+|||+|||+|..|..+++.. +.+.|+++|+++..++.++++ .+++.+...|+..+..
T Consensus 26 ~~~~~~~~~vLDiGcG~G~~~~~la~~~--------~~~~v~gvD~s~~~i~~a~~~-----~~~~~~~~~d~~~~~~-- 90 (258)
T PRK01683 26 RVPLENPRYVVDLGCGPGNSTELLVERW--------PAARITGIDSSPAMLAEARSR-----LPDCQFVEADIASWQP-- 90 (258)
T ss_pred hCCCcCCCEEEEEcccCCHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHHh-----CCCCeEEECchhccCC--
Confidence 3456788999999999999999998774 467999999999998887765 3567788888865421
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
...||.|++... + .|-+. +..+|.++.++|||||.++.++
T Consensus 91 ---------~~~fD~v~~~~~------l--------~~~~d--------~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 91 ---------PQALDLIFANAS------L--------QWLPD--------HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred ---------CCCccEEEEccC------h--------hhCCC--------HHHHHHHHHHhcCCCcEEEEEC
Confidence 147999998653 1 11111 2468999999999999998763
No 102
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.73 E-value=5.5e-08 Score=96.48 Aligned_cols=83 Identities=18% Similarity=0.134 Sum_probs=66.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~~~ 255 (646)
+|.+|||+|||+|+.+..++.. +...|+++|.++..++.+++|++.+++. ++.+++.|+..+.....
T Consensus 49 ~g~~vLDLfaGsG~lglea~sr---------ga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~--- 116 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSR---------GAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA--- 116 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhC---------CCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh---
Confidence 4789999999999999988765 3568999999999999999999999986 68899999855422110
Q ss_pred CCCCCCCCCCeeecCCCCC
Q psy17365 256 DGNKVPMKFDRVLCDVPCT 274 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCS 274 (646)
.....||+|++|||..
T Consensus 117 ---~~~~~~dvv~~DPPy~ 132 (189)
T TIGR00095 117 ---KKPTFDNVIYLDPPFF 132 (189)
T ss_pred ---ccCCCceEEEECcCCC
Confidence 0112589999999964
No 103
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.73 E-value=2.5e-08 Score=98.03 Aligned_cols=82 Identities=24% Similarity=0.223 Sum_probs=66.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.|.+|||++||+|+..+.++++ +...++.+|.|.+.+..|++|++.++. .++.++..|+..+.....
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSR---------GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~--- 110 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSR---------GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG--- 110 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhC---------CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC---
Confidence 5889999999999999887765 578999999999999999999999994 468888999885432111
Q ss_pred CCCCCCCCCCeeecCCCCC
Q psy17365 256 DGNKVPMKFDRVLCDVPCT 274 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCS 274 (646)
+ ...||.|++|||.-
T Consensus 111 -~---~~~FDlVflDPPy~ 125 (187)
T COG0742 111 -T---REPFDLVFLDPPYA 125 (187)
T ss_pred -C---CCcccEEEeCCCCc
Confidence 1 12599999999954
No 104
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=98.72 E-value=2.1e-07 Score=99.79 Aligned_cols=109 Identities=20% Similarity=0.198 Sum_probs=77.9
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEecCCCCCcccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-SPCAIITNHDASVMPNVL 251 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~~ni~v~~~Da~~~p~~~ 251 (646)
+++.+|.+|||+|||+|..+..++.. +.+.|+++|.++..+.......+..+ -.++.+...|+..++.
T Consensus 118 l~~l~g~~VLDIGCG~G~~~~~la~~---------g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~-- 186 (322)
T PRK15068 118 LSPLKGRTVLDVGCGNGYHMWRMLGA---------GAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA-- 186 (322)
T ss_pred hCCCCCCEEEEeccCCcHHHHHHHHc---------CCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--
Confidence 44557889999999999999988875 34579999999976654333333333 3468888888877652
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
...||.|+| .|++.+..+. ..+|.++.+.|+|||.+|.+|-
T Consensus 187 ---------~~~FD~V~s------~~vl~H~~dp----------------~~~L~~l~~~LkpGG~lvl~~~ 227 (322)
T PRK15068 187 ---------LKAFDTVFS------MGVLYHRRSP----------------LDHLKQLKDQLVPGGELVLETL 227 (322)
T ss_pred ---------cCCcCEEEE------CChhhccCCH----------------HHHHHHHHHhcCCCcEEEEEEE
Confidence 257999996 2333322221 3578999999999999998864
No 105
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=98.70 E-value=2e-07 Score=99.45 Aligned_cols=115 Identities=16% Similarity=0.139 Sum_probs=79.1
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEecCCCCCcccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-SPCAIITNHDASVMPNVL 251 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~~ni~v~~~Da~~~p~~~ 251 (646)
+++.+|.+|||+|||+|..+..++.. +...|+++|.++..+..+....+..+ ..++.+...++..++.
T Consensus 117 l~~~~g~~VLDvGCG~G~~~~~~~~~---------g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~-- 185 (314)
T TIGR00452 117 LSPLKGRTILDVGCGSGYHMWRMLGH---------GAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHE-- 185 (314)
T ss_pred cCCCCCCEEEEeccCCcHHHHHHHHc---------CCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCC--
Confidence 45677899999999999988777654 34589999999987665433222222 2456677777666542
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccc
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLE 329 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~E 329 (646)
...||.|++- |++-+.++. ...|.++.+.|||||.||.+|..+...+
T Consensus 186 ---------~~~FD~V~s~------gvL~H~~dp----------------~~~L~el~r~LkpGG~Lvletl~i~g~~ 232 (314)
T TIGR00452 186 ---------LYAFDTVFSM------GVLYHRKSP----------------LEHLKQLKHQLVIKGELVLETLVIDGDL 232 (314)
T ss_pred ---------CCCcCEEEEc------chhhccCCH----------------HHHHHHHHHhcCCCCEEEEEEEEecCcc
Confidence 1369999963 444332221 2578999999999999999886654433
No 106
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.70 E-value=8.4e-08 Score=100.47 Aligned_cols=116 Identities=15% Similarity=0.139 Sum_probs=82.1
Q ss_pred ccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCC
Q psy17365 168 IPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASV 246 (646)
Q Consensus 168 l~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~ 246 (646)
.....++++||++|||++||-|+.+..+|+.. ...|+++.+|....+.+++.+++.|+.+ +.+...|...
T Consensus 53 ~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~---------g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~ 123 (273)
T PF02353_consen 53 LLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY---------GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRD 123 (273)
T ss_dssp HHHTTTT--TT-EEEEES-TTSHHHHHHHHHH-----------EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG
T ss_pred HHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc---------CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccc
Confidence 33456789999999999999999999999885 3489999999999999999999999864 7888888765
Q ss_pred CccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC
Q psy17365 247 MPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL 325 (646)
Q Consensus 247 ~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl 325 (646)
++ .+||+|++ .|++-+-.. .--...+..+.++|||||+++.-+++.
T Consensus 124 ~~-------------~~fD~IvS------i~~~Ehvg~--------------~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 124 LP-------------GKFDRIVS------IEMFEHVGR--------------KNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp ----------------S-SEEEE------ESEGGGTCG--------------GGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred cC-------------CCCCEEEE------EechhhcCh--------------hHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 53 37999985 243332211 111367899999999999998766654
No 107
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.68 E-value=6.7e-08 Score=104.81 Aligned_cols=89 Identities=12% Similarity=0.128 Sum_probs=66.9
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC--C-
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD--A- 255 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~--~- 255 (646)
.+|||+|||+|..|..++.. ...|+|+|+++..++.+++|++.+|+.|+.++++|+..+....... .
T Consensus 199 ~~vlDl~~G~G~~sl~la~~----------~~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~ 268 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQN----------FRRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFR 268 (353)
T ss_pred CcEEEEeccccHHHHHHHHh----------CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhccccc
Confidence 47999999999999988765 3489999999999999999999999999999999987643210000 0
Q ss_pred --CC-CCCCCCCCeeecCCCCCCCc
Q psy17365 256 --DG-NKVPMKFDRVLCDVPCTGDG 277 (646)
Q Consensus 256 --~g-~~~~~~FD~IL~D~PCSG~G 277 (646)
.+ ......||.|++|||-+|.+
T Consensus 269 ~~~~~~~~~~~~d~v~lDPPR~G~~ 293 (353)
T TIGR02143 269 RLKGIDLKSYNCSTIFVDPPRAGLD 293 (353)
T ss_pred cccccccccCCCCEEEECCCCCCCc
Confidence 00 00012489999999966543
No 108
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=98.67 E-value=1.1e-07 Score=98.31 Aligned_cols=101 Identities=19% Similarity=0.218 Sum_probs=76.8
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+.+.++.+|||+|||+|..+..++... +.+.|+++|+++..++.++++ ++.+.++|+..++.
T Consensus 25 l~~~~~~~vLDlGcG~G~~~~~l~~~~--------p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~~~--- 86 (255)
T PRK14103 25 VGAERARRVVDLGCGPGNLTRYLARRW--------PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDWKP--- 86 (255)
T ss_pred CCCCCCCEEEEEcCCCCHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhCCC---
Confidence 456788999999999999999988764 467899999999988777542 46788888876531
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
...||.|++... +...|+ +..+|.++.+.|||||+++.+
T Consensus 87 --------~~~fD~v~~~~~------l~~~~d----------------~~~~l~~~~~~LkpgG~l~~~ 125 (255)
T PRK14103 87 --------KPDTDVVVSNAA------LQWVPE----------------HADLLVRWVDELAPGSWIAVQ 125 (255)
T ss_pred --------CCCceEEEEehh------hhhCCC----------------HHHHHHHHHHhCCCCcEEEEE
Confidence 147999998653 111111 246899999999999999976
No 109
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.67 E-value=1.9e-07 Score=79.23 Aligned_cols=103 Identities=19% Similarity=0.247 Sum_probs=80.4
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
+|||+|||+|..+..++.. +...++++|+++..+..+.+.....+..++.+...|.......
T Consensus 1 ~ildig~G~G~~~~~~~~~---------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 62 (107)
T cd02440 1 RVLDLGCGTGALALALASG---------PGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPE--------- 62 (107)
T ss_pred CeEEEcCCccHHHHHHhcC---------CCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccc---------
Confidence 4899999999998888761 3679999999999988887655555667788888888765420
Q ss_pred CCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 260 VPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 260 ~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
....||.|+++.+|... ...+..++..+.++|++||.++++
T Consensus 63 ~~~~~d~i~~~~~~~~~---------------------~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 63 ADESFDVIISDPPLHHL---------------------VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred cCCceEEEEEccceeeh---------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 12579999999987652 234567899999999999999876
No 110
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.66 E-value=1.2e-07 Score=93.13 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=83.4
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCC-CCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCCCc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADS-NPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASVMP 248 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~-~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p 248 (646)
.+.++++|+.|||-+||+|+..+..|.+...... .......+++.|++++.++.++.|++..|+.. +.+.+.|++.++
T Consensus 22 ~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l~ 101 (179)
T PF01170_consen 22 NLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDARELP 101 (179)
T ss_dssp HHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGGG
T ss_pred HHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhcc
Confidence 4567889999999999999998887765431000 00001238999999999999999999999865 678888999886
Q ss_pred cccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 249 NVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 249 ~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
.. ...+|.|++|||. |. .......+..+..++++.+.+.|++ ++|+.|+
T Consensus 102 ~~----------~~~~d~IvtnPPy---G~-----------r~~~~~~~~~ly~~~~~~~~~~l~~--~~v~l~~ 150 (179)
T PF01170_consen 102 LP----------DGSVDAIVTNPPY---GR-----------RLGSKKDLEKLYRQFLRELKRVLKP--RAVFLTT 150 (179)
T ss_dssp GT----------TSBSCEEEEE--S---TT-----------SHCHHHHHHHHHHHHHHHHHCHSTT--CEEEEEE
T ss_pred cc----------cCCCCEEEECcch---hh-----------hccCHHHHHHHHHHHHHHHHHHCCC--CEEEEEE
Confidence 21 2479999999993 21 1222344578888999999999998 4444443
No 111
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.66 E-value=8e-08 Score=98.73 Aligned_cols=115 Identities=17% Similarity=0.207 Sum_probs=79.6
Q ss_pred ecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEe
Q psy17365 162 QEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITN 241 (646)
Q Consensus 162 Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~ 241 (646)
|...+......+...++.+|||+|||+|..|..++.. ...|+++|+++..++.++++.. .+.+++
T Consensus 27 q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~----------~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~ 91 (251)
T PRK10258 27 QRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER----------GSQVTALDLSPPMLAQARQKDA-----ADHYLA 91 (251)
T ss_pred HHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc----------CCeEEEEECCHHHHHHHHhhCC-----CCCEEE
Confidence 4444433334444556789999999999988877642 3589999999999887766532 245677
Q ss_pred cCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 242 HDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 242 ~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
+|+..++. ....||.|++..+ + .|... ...+|.++.++|+|||.++++
T Consensus 92 ~d~~~~~~----------~~~~fD~V~s~~~------l--------~~~~d--------~~~~l~~~~~~Lk~gG~l~~~ 139 (251)
T PRK10258 92 GDIESLPL----------ATATFDLAWSNLA------V--------QWCGN--------LSTALRELYRVVRPGGVVAFT 139 (251)
T ss_pred cCcccCcC----------CCCcEEEEEECch------h--------hhcCC--------HHHHHHHHHHHcCCCeEEEEE
Confidence 88876542 1247999997532 1 12111 236789999999999999998
Q ss_pred cC
Q psy17365 322 TC 323 (646)
Q Consensus 322 TC 323 (646)
|-
T Consensus 140 ~~ 141 (251)
T PRK10258 140 TL 141 (251)
T ss_pred eC
Confidence 63
No 112
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.66 E-value=5e-08 Score=98.89 Aligned_cols=105 Identities=16% Similarity=0.184 Sum_probs=78.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
-+|.+|||++||-|..+..||++ ...|+|+|++++-++.++..+...|+. +......+..+. .
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~----------Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~------~ 120 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARL----------GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLA------S 120 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHC----------CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHH------h
Confidence 47889999999999999888875 368999999999999999988887764 222222222221 1
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
. .++||+|+|- -++.+-|+. ..+++.+.+++||||.++.||-
T Consensus 121 ~----~~~FDvV~cm------EVlEHv~dp----------------~~~~~~c~~lvkP~G~lf~STi 162 (243)
T COG2227 121 A----GGQFDVVTCM------EVLEHVPDP----------------ESFLRACAKLVKPGGILFLSTI 162 (243)
T ss_pred c----CCCccEEEEh------hHHHccCCH----------------HHHHHHHHHHcCCCcEEEEecc
Confidence 1 1589999983 445555553 2589999999999999999974
No 113
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=98.66 E-value=6.2e-08 Score=82.85 Aligned_cols=95 Identities=17% Similarity=0.185 Sum_probs=69.7
Q ss_pred EEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCC
Q psy17365 182 LDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVP 261 (646)
Q Consensus 182 LDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~ 261 (646)
||++||+|..+..+++. +...|+++|+++..++.++++.... ++.+..+|+..+|- ..
T Consensus 1 LdiG~G~G~~~~~l~~~---------~~~~v~~~D~~~~~~~~~~~~~~~~---~~~~~~~d~~~l~~----------~~ 58 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR---------GGASVTGIDISEEMLEQARKRLKNE---GVSFRQGDAEDLPF----------PD 58 (95)
T ss_dssp EEET-TTSHHHHHHHHT---------TTCEEEEEES-HHHHHHHHHHTTTS---TEEEEESBTTSSSS-----------T
T ss_pred CEecCcCCHHHHHHHhc---------cCCEEEEEeCCHHHHHHHHhccccc---CchheeehHHhCcc----------cc
Confidence 89999999999999876 3679999999999988887765543 34588899888752 13
Q ss_pred CCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 262 MKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 262 ~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
..||.|++-- ++ ..+ .-+.++++++.++|||||+++.
T Consensus 59 ~sfD~v~~~~------~~-------~~~---------~~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 59 NSFDVVFSNS------VL-------HHL---------EDPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp T-EEEEEEES------HG-------GGS---------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccc------ce-------eec---------cCHHHHHHHHHHHcCcCeEEeC
Confidence 5799999731 11 111 3456889999999999999974
No 114
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=98.65 E-value=1.2e-07 Score=98.75 Aligned_cols=110 Identities=14% Similarity=0.094 Sum_probs=81.0
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.+.+.++.+|||+|||+|+.+..++.. ..+.|+++|+++..+..++++... ..++.+.+.|+...+.
T Consensus 47 ~l~l~~~~~VLDiGcG~G~~a~~la~~---------~~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~~~~-- 113 (263)
T PTZ00098 47 DIELNENSKVLDIGSGLGGGCKYINEK---------YGAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILKKDF-- 113 (263)
T ss_pred hCCCCCCCEEEEEcCCCChhhHHHHhh---------cCCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCcccCCC--
Confidence 357889999999999999998888764 245899999999999888876543 3568888888865431
Q ss_pred ccCCCCCCCCCCCCeeec-CCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 252 YTDADGNKVPMKFDRVLC-DVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~-D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
....||.|++ ++-+ +.+ ..-...+|+++.++|||||+|+.+.-
T Consensus 114 --------~~~~FD~V~s~~~l~-------h~~--------------~~d~~~~l~~i~r~LkPGG~lvi~d~ 157 (263)
T PTZ00098 114 --------PENTFDMIYSRDAIL-------HLS--------------YADKKKLFEKCYKWLKPNGILLITDY 157 (263)
T ss_pred --------CCCCeEEEEEhhhHH-------hCC--------------HHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence 1257999997 2210 000 01234789999999999999997643
No 115
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.64 E-value=3.1e-07 Score=103.16 Aligned_cols=127 Identities=20% Similarity=0.183 Sum_probs=88.7
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+.+.++.+|||+|||+|+.+..++... ...|+|+|+|+..+..+++++...+ .++.+..+|+...+.
T Consensus 262 ~~~~~~~~vLDiGcG~G~~~~~la~~~---------~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~~~--- 328 (475)
T PLN02336 262 LDLKPGQKVLDVGCGIGGGDFYMAENF---------DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKKTY--- 328 (475)
T ss_pred cCCCCCCEEEEEeccCCHHHHHHHHhc---------CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccCCC---
Confidence 456789999999999999998888753 3589999999999999888775333 357888888866431
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHH
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEA 332 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~ 332 (646)
....||.|++. +++...++ ...+|.++.++|||||+|+.++-...+..-..
T Consensus 329 -------~~~~fD~I~s~------~~l~h~~d----------------~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~ 379 (475)
T PLN02336 329 -------PDNSFDVIYSR------DTILHIQD----------------KPALFRSFFKWLKPGGKVLISDYCRSPGTPSP 379 (475)
T ss_pred -------CCCCEEEEEEC------CcccccCC----------------HHHHHHHHHHHcCCCeEEEEEEeccCCCCCcH
Confidence 12479999973 22322222 13689999999999999998865443322222
Q ss_pred HHHHHHHHc
Q psy17365 333 VIQRLIVET 341 (646)
Q Consensus 333 VV~~~L~~~ 341 (646)
....++...
T Consensus 380 ~~~~~~~~~ 388 (475)
T PLN02336 380 EFAEYIKQR 388 (475)
T ss_pred HHHHHHHhc
Confidence 333444443
No 116
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.64 E-value=5.8e-07 Score=90.59 Aligned_cols=114 Identities=22% Similarity=0.287 Sum_probs=83.9
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCcccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVL 251 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~ 251 (646)
+.+.++.+|||+|||+|..+..++.... ....++++|+++..++.+++++...+. .++.+...|+..++.
T Consensus 47 ~~~~~~~~vldiG~G~G~~~~~l~~~~~-------~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-- 117 (239)
T PRK00216 47 LGVRPGDKVLDLACGTGDLAIALAKAVG-------KTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF-- 117 (239)
T ss_pred hCCCCCCeEEEeCCCCCHHHHHHHHHcC-------CCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC--
Confidence 4556788999999999999999988752 257899999999999999998876544 357888888876541
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL 325 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl 325 (646)
....||.|++.- .+...++ ...+|..+.++|++||++++++.+.
T Consensus 118 --------~~~~~D~I~~~~------~l~~~~~----------------~~~~l~~~~~~L~~gG~li~~~~~~ 161 (239)
T PRK00216 118 --------PDNSFDAVTIAF------GLRNVPD----------------IDKALREMYRVLKPGGRLVILEFSK 161 (239)
T ss_pred --------CCCCccEEEEec------ccccCCC----------------HHHHHHHHHHhccCCcEEEEEEecC
Confidence 124799998631 1111111 1367899999999999998875443
No 117
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.63 E-value=2.8e-07 Score=91.64 Aligned_cols=107 Identities=16% Similarity=0.060 Sum_probs=77.2
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+.+.++.+|||+|||.|..+..+|+. .+.|+|+|+++..++.++++++..|++ +.+...|...++.
T Consensus 26 ~~~~~~~~vLDiGcG~G~~a~~la~~----------g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~~~~~--- 91 (195)
T TIGR00477 26 VKTVAPCKTLDLGCGQGRNSLYLSLA----------GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDINAAAL--- 91 (195)
T ss_pred hccCCCCcEEEeCCCCCHHHHHHHHC----------CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccchhccc---
Confidence 34445679999999999999998864 358999999999999999988887775 6666677644321
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
...||.|++-.+.... .. .....++..+.++|||||+++..
T Consensus 92 --------~~~fD~I~~~~~~~~~-------------~~-------~~~~~~l~~~~~~LkpgG~lli~ 132 (195)
T TIGR00477 92 --------NEDYDFIFSTVVFMFL-------------QA-------GRVPEIIANMQAHTRPGGYNLIV 132 (195)
T ss_pred --------cCCCCEEEEecccccC-------------CH-------HHHHHHHHHHHHHhCCCcEEEEE
Confidence 1469999875431110 00 12246899999999999986544
No 118
>PRK04457 spermidine synthase; Provisional
Probab=98.63 E-value=3e-07 Score=95.76 Aligned_cols=115 Identities=15% Similarity=0.098 Sum_probs=84.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-SPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~~ni~v~~~Da~~~p~~~~~~ 254 (646)
.++.+|||+|+|.|+.+..++... +...|+++|+|+..++.+++++...+ .+++.++.+|+..+...
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~--------p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~---- 132 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYL--------PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAV---- 132 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhC--------CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHh----
Confidence 345689999999999999888764 57789999999999999988865444 36789999998765321
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL 325 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl 325 (646)
....||.|++|+- .+.+. |.. -...+++..+.+.|+|||+++...++-
T Consensus 133 -----~~~~yD~I~~D~~-~~~~~----~~~-------------l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 133 -----HRHSTDVILVDGF-DGEGI----IDA-------------LCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred -----CCCCCCEEEEeCC-CCCCC----ccc-------------cCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 1247999999963 22221 110 012478999999999999999865443
No 119
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.62 E-value=7.8e-08 Score=84.94 Aligned_cols=101 Identities=22% Similarity=0.304 Sum_probs=73.2
Q ss_pred EEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCC
Q psy17365 181 VLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKV 260 (646)
Q Consensus 181 VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~ 260 (646)
|||+|||+|..+..++..+.. + +...++++|+|+..++.++++....+. ++.+++.|+..++..
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~--~---~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~---------- 64 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDA--G---PSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS---------- 64 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS----------SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH----------
T ss_pred CEEeecCCcHHHHHHHHHhhh--c---ccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc----------
Confidence 799999999999999988621 0 347999999999999999999888766 788999999886531
Q ss_pred CCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCC
Q psy17365 261 PMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGG 316 (646)
Q Consensus 261 ~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG 316 (646)
...||.|++ ++.. +..- + ...+..++++..++|+|||
T Consensus 65 ~~~~D~v~~----~~~~-~~~~-------~-------~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 65 DGKFDLVVC----SGLS-LHHL-------S-------PEELEALLRRIARLLRPGG 101 (101)
T ss_dssp SSSEEEEEE-----TTG-GGGS-------S-------HHHHHHHHHHHHHTEEEEE
T ss_pred CCCeeEEEE----cCCc-cCCC-------C-------HHHHHHHHHHHHHHhCCCC
Confidence 258999997 2211 1110 1 1234689999999999998
No 120
>PHA03411 putative methyltransferase; Provisional
Probab=98.62 E-value=3.5e-07 Score=95.23 Aligned_cols=142 Identities=17% Similarity=0.125 Sum_probs=93.4
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
++.++.+|||+|||+|..+..++... +...|+++|+++..++.++++ .+++.++++|+..+..
T Consensus 61 ~~~~~grVLDLGcGsGilsl~la~r~--------~~~~V~gVDisp~al~~Ar~n-----~~~v~~v~~D~~e~~~---- 123 (279)
T PHA03411 61 DAHCTGKVLDLCAGIGRLSFCMLHRC--------KPEKIVCVELNPEFARIGKRL-----LPEAEWITSDVFEFES---- 123 (279)
T ss_pred ccccCCeEEEcCCCCCHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHh-----CcCCEEEECchhhhcc----
Confidence 45566799999999999988887653 245899999999998887765 3468889999876531
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHH-HHHHHHHHHHhhccCCeE--EEEcCC-CCccc
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGI-QYRIVKRGVEMLAVGGKI--AYSTCS-LNPLE 329 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~l-Q~~IL~~A~~lLKpGG~L--VYSTCS-l~p~E 329 (646)
...||.|++|||......-.. ..|..|+-. ......+ -.+.+..+..+|+|+|.+ +||+=- ++-.=
T Consensus 124 -------~~kFDlIIsNPPF~~l~~~d~--~~~~~~~GG-~~g~~~l~~~~~l~~v~~~L~p~G~~~~~yss~~~y~~sl 193 (279)
T PHA03411 124 -------NEKFDVVISNPPFGKINTTDT--KDVFEYTGG-EFEFKVMTLGQKFADVGYFIVPTGSAGFAYSGRPYYDGTM 193 (279)
T ss_pred -------cCCCcEEEEcCCccccCchhh--hhhhhhccC-ccccccccHHHHHhhhHheecCCceEEEEEeccccccccC
Confidence 247999999999765432111 111122210 0001111 246788888999999954 366522 23444
Q ss_pred cHHHHHHHHHHcc
Q psy17365 330 DEAVIQRLIVETQ 342 (646)
Q Consensus 330 NE~VV~~~L~~~~ 342 (646)
..+-...+|+.++
T Consensus 194 ~~~~y~~~l~~~g 206 (279)
T PHA03411 194 KSNKYLKWSKQTG 206 (279)
T ss_pred CHHHHHHHHHhcC
Confidence 4555677888876
No 121
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=98.59 E-value=6.9e-07 Score=89.87 Aligned_cols=138 Identities=23% Similarity=0.326 Sum_probs=95.9
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+.++||.+||-++||+|..-.|+++.++ ++|.|+|+|.++.-...|.+-+++ -+||..+-.||+.......
T Consensus 69 ~~ik~gskVLYLGAasGTTVSHvSDIvg-------~~G~VYaVEfs~r~~rdL~~la~~--R~NIiPIl~DAr~P~~Y~~ 139 (229)
T PF01269_consen 69 IPIKPGSKVLYLGAASGTTVSHVSDIVG-------PDGVVYAVEFSPRSMRDLLNLAKK--RPNIIPILEDARHPEKYRM 139 (229)
T ss_dssp -S--TT-EEEEETTTTSHHHHHHHHHHT-------TTSEEEEEESSHHHHHHHHHHHHH--STTEEEEES-TTSGGGGTT
T ss_pred cCCCCCCEEEEecccCCCccchhhhccC-------CCCcEEEEEecchhHHHHHHHhcc--CCceeeeeccCCChHHhhc
Confidence 4578999999999999999999999986 699999999999988888877665 3689999999986543221
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHH-HHHHhhccCCeEEEEc--CCC-Ccc
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVK-RGVEMLAVGGKIAYST--CSL-NPL 328 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~-~A~~lLKpGG~LVYST--CSl-~p~ 328 (646)
.-+.+|.|++|+. .|+ |.+|+. +|-.+||+||.++.+- -|+ ...
T Consensus 140 -------lv~~VDvI~~DVa---------Qp~----------------Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~ 187 (229)
T PF01269_consen 140 -------LVEMVDVIFQDVA---------QPD----------------QARIAALNARHFLKPGGHLIISIKARSIDSTA 187 (229)
T ss_dssp -------TS--EEEEEEE-S---------STT----------------HHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSS
T ss_pred -------ccccccEEEecCC---------ChH----------------HHHHHHHHHHhhccCCcEEEEEEecCcccCcC
Confidence 1257999999987 232 445554 5667999999888664 223 445
Q ss_pred ccHHHHHHHHHHccC-cEEEeecc
Q psy17365 329 EDEAVIQRLIVETQG-AVQLVDVS 351 (646)
Q Consensus 329 ENE~VV~~~L~~~~~-~~elv~~~ 351 (646)
+.++|.+.-.++... .+++++.-
T Consensus 188 ~p~~vf~~e~~~L~~~~~~~~e~i 211 (229)
T PF01269_consen 188 DPEEVFAEEVKKLKEEGFKPLEQI 211 (229)
T ss_dssp SHHHHHHHHHHHHHCTTCEEEEEE
T ss_pred CHHHHHHHHHHHHHHcCCChheEe
Confidence 667777776665432 36665543
No 122
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.58 E-value=9.2e-08 Score=101.47 Aligned_cols=176 Identities=15% Similarity=0.152 Sum_probs=100.3
Q ss_pred cccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q psy17365 156 TGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP 235 (646)
Q Consensus 156 ~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ 235 (646)
.|.++--...+.+.+.+++++++.+|||.|||+|+..+++.+.+.... .......++|+|+++..+.++.-|+.-.|..
T Consensus 25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~-~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~ 103 (311)
T PF02384_consen 25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKR-NKIKEINIYGIEIDPEAVALAKLNLLLHGID 103 (311)
T ss_dssp CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCH-HHHCCEEEEEEES-HHHHHHHHHHHHHTTHH
T ss_pred cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccc-cccccceeEeecCcHHHHHHHHhhhhhhccc
Confidence 455555555556777778999999999999999999998887651000 0003668999999999999888887655543
Q ss_pred --CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhc
Q psy17365 236 --CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLA 313 (646)
Q Consensus 236 --ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLK 313 (646)
+..+...|...-+... ....||.||++||.+..+........-.+|... ...-...+...+.+++++||
T Consensus 104 ~~~~~i~~~d~l~~~~~~--------~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Fi~~~l~~Lk 174 (311)
T PF02384_consen 104 NSNINIIQGDSLENDKFI--------KNQKFDVIIGNPPFGSKEWKDEELEKDERFKKY-FPPKSNAEYAFIEHALSLLK 174 (311)
T ss_dssp CBGCEEEES-TTTSHSCT--------ST--EEEEEEE--CTCES-STGGGCTTCCCTTC-SSSTTEHHHHHHHHHHHTEE
T ss_pred cccccccccccccccccc--------cccccccccCCCCcccccccccccccccccccc-CCCccchhhhhHHHHHhhcc
Confidence 3457777764432211 135799999999988774311100000123221 11112233457889999999
Q ss_pred cCCeEEEEcCC--CCccccHHHHHH-HHHHc
Q psy17365 314 VGGKIAYSTCS--LNPLEDEAVIQR-LIVET 341 (646)
Q Consensus 314 pGG~LVYSTCS--l~p~ENE~VV~~-~L~~~ 341 (646)
+||++++..-+ +....-+.-+.+ +|+++
T Consensus 175 ~~G~~~~Ilp~~~L~~~~~~~~iR~~ll~~~ 205 (311)
T PF02384_consen 175 PGGRAAIILPNGFLFSSSSEKKIRKYLLENG 205 (311)
T ss_dssp EEEEEEEEEEHHHHHGSTHHHHHHHHHHHHE
T ss_pred cccceeEEecchhhhccchHHHHHHHHHhhc
Confidence 99997766543 333222445554 44443
No 123
>PLN03075 nicotianamine synthase; Provisional
Probab=98.56 E-value=4.8e-07 Score=95.34 Aligned_cols=109 Identities=12% Similarity=0.106 Sum_probs=83.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-cCCCC-eEEEecCCCCCccccccC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR-LNSPC-AIITNHDASVMPNVLYTD 254 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~r-lg~~n-i~v~~~Da~~~p~~~~~~ 254 (646)
+..+|+|+|||||+.|+.++...+ .+.|.++++|+|+.+++.+++++.+ .++.+ +.+..+|+...+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~------~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~----- 191 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHH------LPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE----- 191 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhc------CCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----
Confidence 668999999999988877654322 1688999999999999999999965 77754 9999999876431
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
....||.|+|++ +- .|.. ..+.++|++..+.|+|||.|++-+
T Consensus 192 -----~l~~FDlVF~~A-Li-------------~~dk-------~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 192 -----SLKEYDVVFLAA-LV-------------GMDK-------EEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred -----ccCCcCEEEEec-cc-------------cccc-------ccHHHHHHHHHHhcCCCcEEEEec
Confidence 124799999983 11 1211 123588999999999999999765
No 124
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.56 E-value=7.4e-07 Score=91.08 Aligned_cols=109 Identities=15% Similarity=0.120 Sum_probs=82.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~~ 254 (646)
.++.+|||+|||+|..+..+++.+. . +.+.|+++|+++..+..++++++..+. .++.++++|+..++.
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~---~---p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~----- 120 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNIN---Q---PNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEI----- 120 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcC---C---CCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCC-----
Confidence 5788999999999999999988752 0 467899999999999999999887664 468889999876541
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
..+|.|++.-. +.. +.+ .....+|.++.+.|||||.++.+.
T Consensus 121 -------~~~d~v~~~~~------l~~-------~~~-------~~~~~~l~~i~~~LkpgG~l~i~d 161 (239)
T TIGR00740 121 -------KNASMVILNFT------LQF-------LPP-------EDRIALLTKIYEGLNPNGVLVLSE 161 (239)
T ss_pred -------CCCCEEeeecc------hhh-------CCH-------HHHHHHHHHHHHhcCCCeEEEEee
Confidence 34787775321 110 010 113478999999999999999874
No 125
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.54 E-value=4.8e-08 Score=98.11 Aligned_cols=114 Identities=18% Similarity=0.234 Sum_probs=86.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCcccccc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYT 253 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~ 253 (646)
...-.+||++|++.|.-|+.+|+.+. +.|.|+++|+++++.+.+++++++.|.. .|.++.+||..+.....
T Consensus 43 ~~~~k~vLEIGt~~GySal~la~~l~-------~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~- 114 (205)
T PF01596_consen 43 LTRPKRVLEIGTFTGYSALWLAEALP-------EDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA- 114 (205)
T ss_dssp HHT-SEEEEESTTTSHHHHHHHHTST-------TTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH-
T ss_pred hcCCceEEEeccccccHHHHHHHhhc-------ccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH-
Confidence 33455999999999999999998874 4799999999999999999999999985 68999999976422111
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
.++ ..+.||.|++|+. + ..+...+..++++|++||.||.--+-
T Consensus 115 -~~~--~~~~fD~VFiDa~---------------K----------~~y~~y~~~~~~ll~~ggvii~DN~l 157 (205)
T PF01596_consen 115 -NDG--EEGQFDFVFIDAD---------------K----------RNYLEYFEKALPLLRPGGVIIADNVL 157 (205)
T ss_dssp -HTT--TTTSEEEEEEEST---------------G----------GGHHHHHHHHHHHEEEEEEEEEETTT
T ss_pred -hcc--CCCceeEEEEccc---------------c----------cchhhHHHHHhhhccCCeEEEEcccc
Confidence 011 1257999999985 0 12345677888999999999865443
No 126
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.53 E-value=3.4e-07 Score=95.57 Aligned_cols=115 Identities=14% Similarity=0.111 Sum_probs=91.1
Q ss_pred ccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCC
Q psy17365 168 IPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASV 246 (646)
Q Consensus 168 l~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~ 246 (646)
+....|.++||++|||++||-|+.+..+|+.. ...|+++++|++.++.+++.++..|+. +|.+...|-..
T Consensus 63 ~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y---------~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd 133 (283)
T COG2230 63 LILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY---------GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRD 133 (283)
T ss_pred HHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc---------CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccc
Confidence 34456789999999999999999999999874 468999999999999999999999998 88888888766
Q ss_pred CccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 247 MPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 247 ~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
+. +.||+|+. -|++.+-- . ......+..+.++|+|||+++.-|-+
T Consensus 134 ~~-------------e~fDrIvS------vgmfEhvg-------~-------~~~~~ff~~~~~~L~~~G~~llh~I~ 178 (283)
T COG2230 134 FE-------------EPFDRIVS------VGMFEHVG-------K-------ENYDDFFKKVYALLKPGGRMLLHSIT 178 (283)
T ss_pred cc-------------cccceeee------hhhHHHhC-------c-------ccHHHHHHHHHhhcCCCceEEEEEec
Confidence 53 35999984 35443211 0 11236789999999999999876544
No 127
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.53 E-value=2.7e-07 Score=89.25 Aligned_cols=82 Identities=24% Similarity=0.204 Sum_probs=58.3
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccccCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYTDADGN 258 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~~~~g~ 258 (646)
.|||+|||-||-|.|.|... ..|+|+|+|+.|+++++||++-+|+ .+|.++++|+..+.....
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~----------~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~------ 65 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTF----------DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK------ 65 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-----------EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------
T ss_pred EEEEeccCcCHHHHHHHHhC----------CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc------
Confidence 69999999999999999763 3799999999999999999999996 589999999877543211
Q ss_pred CCCCCCCeeecCCCCCCCcc
Q psy17365 259 KVPMKFDRVLCDVPCTGDGT 278 (646)
Q Consensus 259 ~~~~~FD~IL~D~PCSG~G~ 278 (646)
....||.|+++||=-|-.-
T Consensus 66 -~~~~~D~vFlSPPWGGp~Y 84 (163)
T PF09445_consen 66 -SNKIFDVVFLSPPWGGPSY 84 (163)
T ss_dssp ------SEEEE---BSSGGG
T ss_pred -ccccccEEEECCCCCCccc
Confidence 0112899999999666543
No 128
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=98.52 E-value=1e-06 Score=94.98 Aligned_cols=103 Identities=22% Similarity=0.250 Sum_probs=76.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.++.+|||+|||+|..+..+++.+ +.+.|+++|+++..++.++++.. ..++.++.+|+..++.
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~--------~~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~------ 174 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHV--------DAKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPF------ 174 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCC------
Confidence 468899999999999998888764 34689999999999888877643 3567788888876542
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
....||.|++. +++...++ ...+|+++.++|||||+++.+
T Consensus 175 ----~~~sFDvVIs~------~~L~~~~d----------------~~~~L~e~~rvLkPGG~LvIi 214 (340)
T PLN02490 175 ----PTDYADRYVSA------GSIEYWPD----------------PQRGIKEAYRVLKIGGKACLI 214 (340)
T ss_pred ----CCCceeEEEEc------ChhhhCCC----------------HHHHHHHHHHhcCCCcEEEEE
Confidence 12479999873 22221121 125799999999999998865
No 129
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=98.52 E-value=4.7e-07 Score=99.31 Aligned_cols=111 Identities=16% Similarity=0.087 Sum_probs=80.7
Q ss_pred ccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcc
Q psy17365 170 PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPN 249 (646)
Q Consensus 170 ~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~ 249 (646)
...++++||++|||+|||+|+.+.++++.. ...|+|+|+|+..++.++++++.+ ++.+...|...+
T Consensus 160 ~~~l~l~~g~rVLDIGcG~G~~a~~la~~~---------g~~V~giDlS~~~l~~A~~~~~~l---~v~~~~~D~~~l-- 225 (383)
T PRK11705 160 CRKLQLKPGMRVLDIGCGWGGLARYAAEHY---------GVSVVGVTISAEQQKLAQERCAGL---PVEIRLQDYRDL-- 225 (383)
T ss_pred HHHhCCCCCCEEEEeCCCccHHHHHHHHHC---------CCEEEEEeCCHHHHHHHHHHhccC---eEEEEECchhhc--
Confidence 344678899999999999999999998763 358999999999999998887532 366777776443
Q ss_pred ccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC
Q psy17365 250 VLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL 325 (646)
Q Consensus 250 ~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl 325 (646)
...||.|++- +++..-+. .....++..+.++|||||+++.++.+.
T Consensus 226 -----------~~~fD~Ivs~------~~~ehvg~--------------~~~~~~l~~i~r~LkpGG~lvl~~i~~ 270 (383)
T PRK11705 226 -----------NGQFDRIVSV------GMFEHVGP--------------KNYRTYFEVVRRCLKPDGLFLLHTIGS 270 (383)
T ss_pred -----------CCCCCEEEEe------CchhhCCh--------------HHHHHHHHHHHHHcCCCcEEEEEEccC
Confidence 1469999862 22211110 112367889999999999999876443
No 130
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.51 E-value=4.1e-07 Score=91.99 Aligned_cols=116 Identities=16% Similarity=0.164 Sum_probs=89.9
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEe-cCCCCCc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITN-HDASVMP 248 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~-~Da~~~p 248 (646)
.++......+||+++++-|.-|+.||..+. ..|+++++|+++++.+.+++|+++.|+.+ |.++. +|+....
T Consensus 53 ~L~~~~~~k~iLEiGT~~GySal~mA~~l~-------~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l 125 (219)
T COG4122 53 LLARLSGPKRILEIGTAIGYSALWMALALP-------DDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVL 125 (219)
T ss_pred HHHHhcCCceEEEeecccCHHHHHHHhhCC-------CCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHH
Confidence 345556777999999999999999999874 37899999999999999999999999987 66666 4775532
Q ss_pred cccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCC
Q psy17365 249 NVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLN 326 (646)
Q Consensus 249 ~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~ 326 (646)
.. ...+.||.|+.|+- ...+...+..++++|+|||.||.=--.+.
T Consensus 126 ~~--------~~~~~fDliFIDad-------------------------K~~yp~~le~~~~lLr~GGliv~DNvl~~ 170 (219)
T COG4122 126 SR--------LLDGSFDLVFIDAD-------------------------KADYPEYLERALPLLRPGGLIVADNVLFG 170 (219)
T ss_pred Hh--------ccCCCccEEEEeCC-------------------------hhhCHHHHHHHHHHhCCCcEEEEeecccC
Confidence 21 11368999999973 11234679999999999999885544433
No 131
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.51 E-value=1.3e-06 Score=88.72 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=80.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
+.++.+|||+|||+|..+..++.. ...++++|+++..+..+..++...+. ++.++..|+..++..
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~----------~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~---- 110 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARL----------GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE---- 110 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHc----------CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh----
Confidence 457889999999999988877653 24699999999999999988887766 466677776654321
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL 325 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl 325 (646)
....||.|++.-. +...++ ...+|..+.++|+|||+++.+++.-
T Consensus 111 -----~~~~fD~Ii~~~~------l~~~~~----------------~~~~l~~~~~~L~~gG~l~v~~~~~ 154 (233)
T PRK05134 111 -----HPGQFDVVTCMEM------LEHVPD----------------PASFVRACAKLVKPGGLVFFSTLNR 154 (233)
T ss_pred -----cCCCccEEEEhhH------hhccCC----------------HHHHHHHHHHHcCCCcEEEEEecCC
Confidence 1257999997432 111111 1257899999999999999987753
No 132
>PRK00811 spermidine synthase; Provisional
Probab=98.49 E-value=1.2e-06 Score=92.36 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=88.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-----CCCeEEEecCCCCCcccc
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-----SPCAIITNHDASVMPNVL 251 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-----~~ni~v~~~Da~~~p~~~ 251 (646)
...+|||+|+|.|+.+..++... +...|+++|+|+..++.+++.+..++ -+++.++.+|+..+...
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~--------~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~- 146 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHP--------SVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE- 146 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCC--------CCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh-
Confidence 34689999999999988887531 34689999999999999999886543 45789999999775321
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccH
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDE 331 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE 331 (646)
...+||+|++|++ +|. .+. . +-...++++.+.+.|+|||.+|..+-+ |....
T Consensus 147 --------~~~~yDvIi~D~~---------dp~-----~~~--~--~l~t~ef~~~~~~~L~~gGvlv~~~~~--~~~~~ 198 (283)
T PRK00811 147 --------TENSFDVIIVDST---------DPV-----GPA--E--GLFTKEFYENCKRALKEDGIFVAQSGS--PFYQA 198 (283)
T ss_pred --------CCCcccEEEECCC---------CCC-----Cch--h--hhhHHHHHHHHHHhcCCCcEEEEeCCC--cccCH
Confidence 1257999999974 111 111 0 112357788899999999998864333 33344
Q ss_pred HHHHHHHHHc
Q psy17365 332 AVIQRLIVET 341 (646)
Q Consensus 332 ~VV~~~L~~~ 341 (646)
..+..+++..
T Consensus 199 ~~~~~i~~tl 208 (283)
T PRK00811 199 DEIKDMHRKL 208 (283)
T ss_pred HHHHHHHHHH
Confidence 4555555443
No 133
>PRK01581 speE spermidine synthase; Validated
Probab=98.48 E-value=1.3e-06 Score=94.30 Aligned_cols=135 Identities=15% Similarity=0.158 Sum_probs=86.4
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHH--H---HH--cCCCCeEEEecC
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQ--A---KR--LNSPCAIITNHD 243 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n--~---~r--lg~~ni~v~~~D 243 (646)
++..+.| .+||++|+|.|+.+..++..- +...|+++|+|+..++.+++. + .+ +.-+++.++.+|
T Consensus 145 m~~h~~P-krVLIIGgGdG~tlrelLk~~--------~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~D 215 (374)
T PRK01581 145 MSKVIDP-KRVLILGGGDGLALREVLKYE--------TVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCD 215 (374)
T ss_pred HHhCCCC-CEEEEECCCHHHHHHHHHhcC--------CCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECc
Confidence 3334444 499999999998655554321 357899999999999988852 1 11 234689999999
Q ss_pred CCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 244 ASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 244 a~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
+..+... ....||+|++|+| +|.. .....+ ...+.+..+.+.|+|||++|.-+
T Consensus 216 a~~fL~~---------~~~~YDVIIvDl~---------DP~~------~~~~~L--yT~EFy~~~~~~LkPgGV~V~Qs- 268 (374)
T PRK01581 216 AKEFLSS---------PSSLYDVIIIDFP---------DPAT------ELLSTL--YTSELFARIATFLTEDGAFVCQS- 268 (374)
T ss_pred HHHHHHh---------cCCCccEEEEcCC---------Cccc------cchhhh--hHHHHHHHHHHhcCCCcEEEEec-
Confidence 9875421 1247999999976 1211 001111 12477889999999999988653
Q ss_pred CCCccccHHHH---HHHHHHcc
Q psy17365 324 SLNPLEDEAVI---QRLIVETQ 342 (646)
Q Consensus 324 Sl~p~ENE~VV---~~~L~~~~ 342 (646)
-+|.....++ ...|++..
T Consensus 269 -~sp~~~~~~~~~i~~tL~~af 289 (374)
T PRK01581 269 -NSPADAPLVYWSIGNTIEHAG 289 (374)
T ss_pred -CChhhhHHHHHHHHHHHHHhC
Confidence 3344444453 34444443
No 134
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.47 E-value=1.3e-06 Score=92.15 Aligned_cols=103 Identities=19% Similarity=0.074 Sum_probs=77.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
++.+|||+|||+|..+..++.. ...|+|+|+|+..++.++++++..++ ++.+...|+...+.
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~----------g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~~------- 181 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL----------GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSASI------- 181 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhcccc-------
Confidence 3449999999999999888764 35899999999999999999998888 78888888754321
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
...||.|++-..+.-. + ......++....++|+|||++++.
T Consensus 182 ----~~~fD~I~~~~vl~~l-----~---------------~~~~~~~l~~~~~~LkpgG~~l~v 222 (287)
T PRK12335 182 ----QEEYDFILSTVVLMFL-----N---------------RERIPAIIKNMQEHTNPGGYNLIV 222 (287)
T ss_pred ----cCCccEEEEcchhhhC-----C---------------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence 2579999974321100 0 012347899999999999996653
No 135
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=98.47 E-value=2.2e-06 Score=85.49 Aligned_cols=109 Identities=20% Similarity=0.254 Sum_probs=80.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
..++.+|||+|||+|..+..++.... ..+.++++|+++..+..++++.. ...++.+..+|+...+.
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~-------~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~~~----- 102 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAP-------DRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEALPF----- 102 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcC-------CCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcCCC-----
Confidence 34788999999999999999887752 23789999999999998888765 34567888888876541
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
....||.|++.- .+...++. ..+|+++.++|+|||+++..+.+
T Consensus 103 -----~~~~~D~i~~~~------~~~~~~~~----------------~~~l~~~~~~L~~gG~l~~~~~~ 145 (223)
T TIGR01934 103 -----EDNSFDAVTIAF------GLRNVTDI----------------QKALREMYRVLKPGGRLVILEFS 145 (223)
T ss_pred -----CCCcEEEEEEee------eeCCcccH----------------HHHHHHHHHHcCCCcEEEEEEec
Confidence 124699998621 11111111 26799999999999999977654
No 136
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.47 E-value=9.2e-07 Score=85.73 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=65.9
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.+++.++++|||+|||+|..|..+++. .+.|+|+|+|+..+..+++++.. ..++.++++|+..++..
T Consensus 8 ~~~~~~~~~vLEiG~G~G~lt~~l~~~----------~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~- 74 (169)
T smart00650 8 AANLRPGDTVLEIGPGKGALTEELLER----------AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLP- 74 (169)
T ss_pred hcCCCCcCEEEEECCCccHHHHHHHhc----------CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCcc-
Confidence 356778999999999999999998865 35899999999999999988754 45789999999876421
Q ss_pred ccCCCCCCCCCCCCeeecCCCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPC 273 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PC 273 (646)
...||.|+.|+|.
T Consensus 75 ---------~~~~d~vi~n~Py 87 (169)
T smart00650 75 ---------KLQPYKVVGNLPY 87 (169)
T ss_pred ---------ccCCCEEEECCCc
Confidence 1359999999995
No 137
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.45 E-value=3.6e-06 Score=84.79 Aligned_cols=103 Identities=17% Similarity=0.193 Sum_probs=78.2
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCccccccCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYTDADGN 258 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~~~~g~ 258 (646)
+|||+|||.|+.+..+++.. +...|+++|+++..+..++++++..|.. ++.+...|+...+.
T Consensus 2 ~vLDiGcG~G~~~~~la~~~--------~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~--------- 64 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERH--------PHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPF--------- 64 (224)
T ss_pred eEEEECCCCCHHHHHHHHHC--------CCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCC---------
Confidence 79999999999999888764 3568999999999999999999888764 57888888754321
Q ss_pred CCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 259 KVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 259 ~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
...||.|++- +++...++ ...++..+.++|||||+++.++.
T Consensus 65 --~~~fD~I~~~------~~l~~~~~----------------~~~~l~~~~~~LkpgG~l~i~~~ 105 (224)
T smart00828 65 --PDTYDLVFGF------EVIHHIKD----------------KMDLFSNISRHLKDGGHLVLADF 105 (224)
T ss_pred --CCCCCEeehH------HHHHhCCC----------------HHHHHHHHHHHcCCCCEEEEEEc
Confidence 1469999852 11111111 24689999999999999997753
No 138
>PRK06922 hypothetical protein; Provisional
Probab=98.44 E-value=1.3e-06 Score=100.22 Aligned_cols=128 Identities=16% Similarity=0.132 Sum_probs=87.2
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
+++..++.+|||+|||+|..+..+++.. +.+.|+|+|+++..++.++.+....+. ++.++++|+..++...
T Consensus 413 i~d~~~g~rVLDIGCGTG~ls~~LA~~~--------P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~f 483 (677)
T PRK06922 413 ILDYIKGDTIVDVGAGGGVMLDMIEEET--------EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSF 483 (677)
T ss_pred HhhhcCCCEEEEeCCCCCHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCcccc
Confidence 4455678999999999999888888764 578999999999999999888766553 5778888987765321
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL 325 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl 325 (646)
....||.|++..+-... +..-|.--..|+ .....++|.++.++|||||+++.+.-++
T Consensus 484 --------edeSFDvVVsn~vLH~L--~syIp~~g~~f~-------~edl~kiLreI~RVLKPGGrLII~D~v~ 540 (677)
T PRK06922 484 --------EKESVDTIVYSSILHEL--FSYIEYEGKKFN-------HEVIKKGLQSAYEVLKPGGRIIIRDGIM 540 (677)
T ss_pred --------CCCCEEEEEEchHHHhh--hhhccccccccc-------HHHHHHHHHHHHHHcCCCcEEEEEeCcc
Confidence 12579999975431000 000000000111 1234578999999999999999874333
No 139
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.40 E-value=2.5e-06 Score=89.19 Aligned_cols=128 Identities=14% Similarity=0.090 Sum_probs=86.4
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEecCCCCCcc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN----SPCAIITNHDASVMPN 249 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg----~~ni~v~~~Da~~~p~ 249 (646)
...|. +||++++|.|+.+..++... +...|+++|+++..++.+++++..++ .+++.++..|+..+..
T Consensus 70 ~~~p~-~VL~iG~G~G~~~~~ll~~~--------~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~ 140 (270)
T TIGR00417 70 HPNPK-HVLVIGGGDGGVLREVLKHK--------SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLA 140 (270)
T ss_pred CCCCC-EEEEEcCCchHHHHHHHhCC--------CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHH
Confidence 34444 99999999999887776542 25689999999999999988875543 3567788888865432
Q ss_pred ccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccc
Q psy17365 250 VLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLE 329 (646)
Q Consensus 250 ~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~E 329 (646)
. ....||+|++|++-. .+. . ..+ ...+.++.+.++|+|||.++..+++. .-
T Consensus 141 ~---------~~~~yDvIi~D~~~~-~~~-----~----------~~l--~~~ef~~~~~~~L~pgG~lv~~~~~~--~~ 191 (270)
T TIGR00417 141 D---------TENTFDVIIVDSTDP-VGP-----A----------ETL--FTKEFYELLKKALNEDGIFVAQSESP--WI 191 (270)
T ss_pred h---------CCCCccEEEEeCCCC-CCc-----c----------cch--hHHHHHHHHHHHhCCCcEEEEcCCCc--cc
Confidence 1 125799999997621 111 0 011 12467888999999999999876653 23
Q ss_pred cHHHHHHHHH
Q psy17365 330 DEAVIQRLIV 339 (646)
Q Consensus 330 NE~VV~~~L~ 339 (646)
+...+..+++
T Consensus 192 ~~~~~~~~~~ 201 (270)
T TIGR00417 192 QLELITDLKR 201 (270)
T ss_pred CHHHHHHHHH
Confidence 3444444433
No 140
>PRK03612 spermidine synthase; Provisional
Probab=98.39 E-value=1.6e-06 Score=98.75 Aligned_cols=114 Identities=20% Similarity=0.273 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCC-cEEEEEcCCHHHHHHHHHH--HHH-----cCCCCeEEEecCCCCC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPS-GLVVANDVDNNRCYMLVHQ--AKR-----LNSPCAIITNHDASVM 247 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~-G~VvA~Dis~~Rl~~L~~n--~~r-----lg~~ni~v~~~Da~~~ 247 (646)
.+..+|||+|+|.|..+.+++.. +. ..|+++|+|++.++.++++ +.. +.-+++.++++|+..+
T Consensus 296 ~~~~rVL~IG~G~G~~~~~ll~~---------~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~ 366 (521)
T PRK03612 296 ARPRRVLVLGGGDGLALREVLKY---------PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNW 366 (521)
T ss_pred CCCCeEEEEcCCccHHHHHHHhC---------CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHH
Confidence 34578999999999988877653 23 6999999999999999884 222 2236789999999875
Q ss_pred ccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 248 PNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 248 p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
... ...+||.|++|.|-.. .|.. .. -...++++.+.+.|+|||.++..++|
T Consensus 367 l~~---------~~~~fDvIi~D~~~~~------~~~~---------~~--L~t~ef~~~~~~~L~pgG~lv~~~~~ 417 (521)
T PRK03612 367 LRK---------LAEKFDVIIVDLPDPS------NPAL---------GK--LYSVEFYRLLKRRLAPDGLLVVQSTS 417 (521)
T ss_pred HHh---------CCCCCCEEEEeCCCCC------Ccch---------hc--cchHHHHHHHHHhcCCCeEEEEecCC
Confidence 321 1257999999987221 1111 00 11246788899999999999977665
No 141
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=98.38 E-value=1.4e-06 Score=87.58 Aligned_cols=102 Identities=20% Similarity=0.232 Sum_probs=75.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+|||+|||+|..+..+++.. +...++++|+++..+..+.++.. +++.++..|+...+.
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~--------~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~~~~~~------- 94 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRF--------PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDAEKLPL------- 94 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhC--------CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecchhhCCC-------
Confidence 34689999999999999998874 46679999999998877765443 467888888876542
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
....||.|++....... ++ -..+|.++.++|+|||.+++++
T Consensus 95 ---~~~~fD~vi~~~~l~~~------~~----------------~~~~l~~~~~~L~~~G~l~~~~ 135 (240)
T TIGR02072 95 ---EDSSFDLIVSNLALQWC------DD----------------LSQALSELARVLKPGGLLAFST 135 (240)
T ss_pred ---CCCceeEEEEhhhhhhc------cC----------------HHHHHHHHHHHcCCCcEEEEEe
Confidence 12479999986432111 11 1257899999999999999874
No 142
>KOG1596|consensus
Probab=98.38 E-value=1e-06 Score=88.82 Aligned_cols=127 Identities=26% Similarity=0.329 Sum_probs=100.1
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
-++||.+||=++||+|..-.|+++.++ |.|.|+|+|.+...-..|...+++ -+||+.+..||+...+...
T Consensus 153 hikpGsKVLYLGAasGttVSHvSDiVG-------peG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArhP~KYRm- 222 (317)
T KOG1596|consen 153 HIKPGSKVLYLGAASGTTVSHVSDIVG-------PEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARHPAKYRM- 222 (317)
T ss_pred eecCCceEEEeeccCCceeehhhcccC-------CCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCCchheee-
Confidence 478999999999999999999999987 899999999998776667666553 4688999999987544321
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHH-HHHHHhhccCCeEEEE---cCCCCccc
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIV-KRGVEMLAVGGKIAYS---TCSLNPLE 329 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL-~~A~~lLKpGG~LVYS---TCSl~p~E 329 (646)
.-...|.|+.|++ .|| |.+|| -+|..+||+||.+|.| .|+=....
T Consensus 223 ------lVgmVDvIFaDva---------qpd----------------q~RivaLNA~~FLk~gGhfvisikancidstv~ 271 (317)
T KOG1596|consen 223 ------LVGMVDVIFADVA---------QPD----------------QARIVALNAQYFLKNGGHFVISIKANCIDSTVF 271 (317)
T ss_pred ------eeeeEEEEeccCC---------Cch----------------hhhhhhhhhhhhhccCCeEEEEEeccccccccc
Confidence 1146899999998 444 33444 4788899999988865 68888999
Q ss_pred cHHHHHHHHHHc
Q psy17365 330 DEAVIQRLIVET 341 (646)
Q Consensus 330 NE~VV~~~L~~~ 341 (646)
+|+|.+.-.++.
T Consensus 272 ae~vFa~Ev~kl 283 (317)
T KOG1596|consen 272 AEAVFAAEVKKL 283 (317)
T ss_pred HHHHHHHHHHHH
Confidence 999988766554
No 143
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.38 E-value=3e-07 Score=92.40 Aligned_cols=139 Identities=18% Similarity=0.239 Sum_probs=93.8
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHH--HHHcCCCCeEEEecCCCCCccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQ--AKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n--~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
..++.|.+|||.|.|-|..++..++. ++..|+.+|.|+.-+.++.-| ...+-..+|.++.+|+.++-..
T Consensus 130 V~~~~G~rVLDtC~GLGYtAi~a~~r---------GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~ 200 (287)
T COG2521 130 VKVKRGERVLDTCTGLGYTAIEALER---------GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKD 200 (287)
T ss_pred eccccCCEeeeeccCccHHHHHHHHc---------CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhc
Confidence 45677999999999999988877765 466899999999987776555 2223334688999998765322
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE-EEcCC---CC
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA-YSTCS---LN 326 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV-YSTCS---l~ 326 (646)
+ ..+.||.|+-||| +++... +|- -.++-++.+++||+||+|+ |.--. +.
T Consensus 201 ~--------~D~sfDaIiHDPP---------------RfS~Ag--eLY--seefY~El~RiLkrgGrlFHYvG~Pg~ryr 253 (287)
T COG2521 201 F--------DDESFDAIIHDPP---------------RFSLAG--ELY--SEEFYRELYRILKRGGRLFHYVGNPGKRYR 253 (287)
T ss_pred C--------CccccceEeeCCC---------------ccchhh--hHh--HHHHHHHHHHHcCcCCcEEEEeCCCCcccc
Confidence 1 1367999999999 333222 111 1356677789999999998 44321 12
Q ss_pred ccccHHHHHHHHHHccCcEEEee
Q psy17365 327 PLEDEAVIQRLIVETQGAVQLVD 349 (646)
Q Consensus 327 p~ENE~VV~~~L~~~~~~~elv~ 349 (646)
-..-..=|++-|++-+ |+.|+
T Consensus 254 G~d~~~gVa~RLr~vG--F~~v~ 274 (287)
T COG2521 254 GLDLPKGVAERLRRVG--FEVVK 274 (287)
T ss_pred cCChhHHHHHHHHhcC--ceeee
Confidence 2233455777777765 56554
No 144
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.37 E-value=3.6e-06 Score=89.29 Aligned_cols=120 Identities=12% Similarity=0.071 Sum_probs=87.7
Q ss_pred ccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCc
Q psy17365 170 PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMP 248 (646)
Q Consensus 170 ~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p 248 (646)
...++..++.+|||+|||+|..+..+++.. |.+.++++|. +..++.+++++++.|.. ++.++.+|+...+
T Consensus 142 ~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~--------p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 142 LEEAKLDGVKKMIDVGGGIGDISAAMLKHF--------PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred HHHcCCCCCCEEEEeCCchhHHHHHHHHHC--------CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 344567888999999999999999998874 5788999997 78899999999998875 5888999976421
Q ss_pred cccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcc
Q psy17365 249 NVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPL 328 (646)
Q Consensus 249 ~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ 328 (646)
...+|.|++- ++ ...|... .-..+|+++.+.|+|||+|+.....+...
T Consensus 213 ------------~~~~D~v~~~------~~-------lh~~~~~-------~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 260 (306)
T TIGR02716 213 ------------YPEADAVLFC------RI-------LYSANEQ-------LSTIMCKKAFDAMRSGGRLLILDMVIDDP 260 (306)
T ss_pred ------------CCCCCEEEeE------hh-------hhcCChH-------HHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence 1236887751 11 1123222 12468999999999999998776555444
Q ss_pred cc
Q psy17365 329 ED 330 (646)
Q Consensus 329 EN 330 (646)
++
T Consensus 261 ~~ 262 (306)
T TIGR02716 261 EN 262 (306)
T ss_pred CC
Confidence 43
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.35 E-value=3e-06 Score=84.56 Aligned_cols=135 Identities=16% Similarity=0.289 Sum_probs=92.7
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
.+||+|||-|..++++|..- |.-.++|+|+...++..+...+.+.+++|+.++++||..+.....
T Consensus 20 l~lEIG~G~G~~l~~~A~~~--------Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~------- 84 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRN--------PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLF------- 84 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHS--------TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHS-------
T ss_pred eEEEecCCCCHHHHHHHHHC--------CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcc-------
Confidence 89999999999999999874 677999999999999999999999999999999999987433221
Q ss_pred CCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHH
Q psy17365 260 VPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIV 339 (646)
Q Consensus 260 ~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~ 339 (646)
....+|.|.+.=| +| |.+-+... .+ -.|...|....+.|+|||.|...| .++....++++
T Consensus 85 ~~~~v~~i~i~FP---------DP--WpK~rH~k-rR--l~~~~fl~~~~~~L~~gG~l~~~T------D~~~y~~~~~~ 144 (195)
T PF02390_consen 85 PPGSVDRIYINFP---------DP--WPKKRHHK-RR--LVNPEFLELLARVLKPGGELYFAT------DVEEYAEWMLE 144 (195)
T ss_dssp TTTSEEEEEEES----------------SGGGGG-GS--TTSHHHHHHHHHHEEEEEEEEEEE------S-HHHHHHHHH
T ss_pred cCCchheEEEeCC---------CC--Ccccchhh-hh--cCCchHHHHHHHHcCCCCEEEEEe------CCHHHHHHHHH
Confidence 1256888888765 44 32321111 11 134578888899999999998877 45555555553
Q ss_pred ---HccCcEEEee
Q psy17365 340 ---ETQGAVQLVD 349 (646)
Q Consensus 340 ---~~~~~~elv~ 349 (646)
.+.+.++.+.
T Consensus 145 ~~~~~~~~f~~~~ 157 (195)
T PF02390_consen 145 QFEESHPGFENIE 157 (195)
T ss_dssp HHHHHSTTEEEE-
T ss_pred HHHhcCcCeEEcc
Confidence 3222466653
No 146
>KOG4589|consensus
Probab=98.33 E-value=4.3e-06 Score=81.62 Aligned_cols=137 Identities=22% Similarity=0.254 Sum_probs=93.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEec-CCCCCc---cc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNH-DASVMP---NV 250 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~-Da~~~p---~~ 250 (646)
+.|+++|||++||||+++.-+.+..+ |.|.|.++|+-.- ...+.+.++.+ |.+... .+
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~-------p~g~v~gVDllh~-----------~p~~Ga~~i~~~dvtdp~~~~ki 128 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVN-------PNGMVLGVDLLHI-----------EPPEGATIIQGNDVTDPETYRKI 128 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhC-------CCceEEEEeeeec-----------cCCCCcccccccccCCHHHHHHH
Confidence 36799999999999999988888765 8999999997431 12334445554 554421 11
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcccc
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~EN 330 (646)
.... .....|.||.|.---.+|. +..+-..+..+-...|.-|+.+++|+|.+| |-+...+.
T Consensus 129 ~e~l-----p~r~VdvVlSDMapnaTGv-----------r~~Dh~~~i~LC~s~l~~al~~~~p~g~fv---cK~w~g~e 189 (232)
T KOG4589|consen 129 FEAL-----PNRPVDVVLSDMAPNATGV-----------RIRDHYRSIELCDSALLFALTLLIPNGSFV---CKLWDGSE 189 (232)
T ss_pred HHhC-----CCCcccEEEeccCCCCcCc-----------chhhHHHHHHHHHHHHHHhhhhcCCCcEEE---EEEecCCc
Confidence 1111 1257899999964444443 233445566777788899999999999999 88888888
Q ss_pred HHHHHHHHHHccCcEEEe
Q psy17365 331 EAVIQRLIVETQGAVQLV 348 (646)
Q Consensus 331 E~VV~~~L~~~~~~~elv 348 (646)
++-.+.-|..+-..+..+
T Consensus 190 ~~~l~r~l~~~f~~Vk~v 207 (232)
T KOG4589|consen 190 EALLQRRLQAVFTNVKKV 207 (232)
T ss_pred hHHHHHHHHHHhhhcEee
Confidence 877777776543334444
No 147
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.33 E-value=3.4e-06 Score=84.81 Aligned_cols=107 Identities=17% Similarity=0.172 Sum_probs=80.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+|||+|||+|..+.+++.. ...++++|+++..+..++.++.+.+..++.+...|+..++..
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~----------~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~------ 108 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARL----------GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK------ 108 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhc----------CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC------
Confidence 4789999999999988887753 235999999999999999998887776678888887665421
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
....||.|++... +..-+ -...+|..+.++|++||.++.++|.
T Consensus 109 ---~~~~~D~i~~~~~------l~~~~----------------~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 109 ---GAKSFDVVTCMEV------LEHVP----------------DPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred ---CCCCccEEEehhH------HHhCC----------------CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 0247999997421 11111 1236889999999999999988764
No 148
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=98.25 E-value=3.6e-06 Score=83.44 Aligned_cols=140 Identities=14% Similarity=0.133 Sum_probs=89.9
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
|.-..-.++||++||-|..|.+||.+ ...++|+|+++..++.+++++. +.++|.+...|...+.
T Consensus 39 Lp~~ry~~alEvGCs~G~lT~~LA~r----------Cd~LlavDis~~Al~~Ar~Rl~--~~~~V~~~~~dvp~~~---- 102 (201)
T PF05401_consen 39 LPRRRYRRALEVGCSIGVLTERLAPR----------CDRLLAVDISPRALARARERLA--GLPHVEWIQADVPEFW---- 102 (201)
T ss_dssp HTTSSEEEEEEE--TTSHHHHHHGGG----------EEEEEEEES-HHHHHHHHHHTT--T-SSEEEEES-TTT------
T ss_pred cCccccceeEecCCCccHHHHHHHHh----------hCceEEEeCCHHHHHHHHHhcC--CCCCeEEEECcCCCCC----
Confidence 44445568999999999999999876 4589999999999999988776 3578999999875542
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC-------
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL------- 325 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl------- 325 (646)
..+.||.|++ |..+. .+++. ......+.+....|+|||.||..|-.-
T Consensus 103 -------P~~~FDLIV~----SEVlY---------YL~~~------~~L~~~l~~l~~~L~pgG~LV~g~~rd~~c~~wg 156 (201)
T PF05401_consen 103 -------PEGRFDLIVL----SEVLY---------YLDDA------EDLRAALDRLVAALAPGGHLVFGHARDANCRRWG 156 (201)
T ss_dssp --------SS-EEEEEE----ES-GG---------GSSSH------HHHHHHHHHHHHTEEEEEEEEEEEE-HHHHHHTT
T ss_pred -------CCCCeeEEEE----ehHhH---------cCCCH------HHHHHHHHHHHHHhCCCCEEEEEEecCCcccccC
Confidence 1368999995 43332 22221 112357788889999999999754221
Q ss_pred CccccHHHHHHHHHHccCcEEEeeccccCC
Q psy17365 326 NPLEDEAVIQRLIVETQGAVQLVDVSAITP 355 (646)
Q Consensus 326 ~p~ENE~VV~~~L~~~~~~~elv~~~~~lp 355 (646)
++. ..+-|.++|.++-..++.+.+....+
T Consensus 157 h~~-ga~tv~~~~~~~~~~~~~~~~~~~~~ 185 (201)
T PF05401_consen 157 HAA-GAETVLEMLQEHLTEVERVECRGGSP 185 (201)
T ss_dssp -S---HHHHHHHHHHHSEEEEEEEEE-SST
T ss_pred ccc-chHHHHHHHHHHhhheeEEEEcCCCC
Confidence 112 35566677777655677776654443
No 149
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.25 E-value=2.9e-06 Score=87.70 Aligned_cols=111 Identities=16% Similarity=0.217 Sum_probs=84.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~~ 254 (646)
..-.+||+++++.|.-|+.+|..+. +.|.|+++|.++.+.+.++.++++.|+ .+|.++.+|+........
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~-------~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~-- 148 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALP-------EDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMI-- 148 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCC-------CCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHH--
Confidence 3445899999999999999998764 578999999999999999999999996 568999999876422111
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
..+ .....||.|++|+- .......+..++++|++||.||.=
T Consensus 149 ~~~-~~~~~fD~iFiDad-------------------------K~~Y~~y~~~~l~ll~~GGviv~D 189 (247)
T PLN02589 149 EDG-KYHGTFDFIFVDAD-------------------------KDNYINYHKRLIDLVKVGGVIGYD 189 (247)
T ss_pred hcc-ccCCcccEEEecCC-------------------------HHHhHHHHHHHHHhcCCCeEEEEc
Confidence 011 01257999999963 112235677788999999999854
No 150
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.24 E-value=1.7e-06 Score=91.47 Aligned_cols=90 Identities=21% Similarity=0.242 Sum_probs=73.1
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
+|.++||..+||+++|.||.|..+++.+. +.|.|+|+|.|+..++.++++++. ..++.+++.|...+....
T Consensus 14 ~L~~~pg~~vlD~TlG~GGhS~~il~~~~-------~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 14 ALAIKPDGIYVDGTFGGGGHSRAILERLG-------PKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred hhCCCCCCEEEEeCcCChHHHHHHHHhCC-------CCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHH
Confidence 45678999999999999999999998863 479999999999999999888765 467999999998875432
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGD 276 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~ 276 (646)
. .+ ...+|.|++|-=+|..
T Consensus 85 ~---~~---~~~vDgIl~DLGvSs~ 103 (296)
T PRK00050 85 A---EG---LGKVDGILLDLGVSSP 103 (296)
T ss_pred H---cC---CCccCEEEECCCcccc
Confidence 1 11 1369999999877764
No 151
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.23 E-value=9.1e-06 Score=86.31 Aligned_cols=127 Identities=11% Similarity=0.063 Sum_probs=81.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-SPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~~ni~v~~~Da~~~p~~~~~~ 254 (646)
.++.+|||+|||+|.||..|++.+. ....++|+|+|+..+..+.+++.... --++..+++|+........
T Consensus 62 ~~~~~iLELGcGtG~~t~~Ll~~l~-------~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~-- 132 (301)
T TIGR03438 62 GAGCELVELGSGSSRKTRLLLDALR-------QPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPP-- 132 (301)
T ss_pred CCCCeEEecCCCcchhHHHHHHhhc-------cCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhc--
Confidence 4678999999999999999998863 14679999999999999988876532 1235667888865321110
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHH
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVI 334 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV 334 (646)
.........++++.+ .|.+ . ..-+.++|+++.+.|+|||.++... +...+.+++
T Consensus 133 ---~~~~~~~~~~~~gs~---~~~~----------~-------~~e~~~~L~~i~~~L~pgG~~lig~---d~~~~~~~~ 186 (301)
T TIGR03438 133 ---EPAAGRRLGFFPGST---IGNF----------T-------PEEAVAFLRRIRQLLGPGGGLLIGV---DLVKDPAVL 186 (301)
T ss_pred ---ccccCCeEEEEeccc---ccCC----------C-------HHHHHHHHHHHHHhcCCCCEEEEec---cCCCCHHHH
Confidence 000011122332221 2211 1 1123578999999999999999654 444566666
Q ss_pred HHH
Q psy17365 335 QRL 337 (646)
Q Consensus 335 ~~~ 337 (646)
..+
T Consensus 187 ~~a 189 (301)
T TIGR03438 187 EAA 189 (301)
T ss_pred HHh
Confidence 444
No 152
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.23 E-value=1.1e-06 Score=91.35 Aligned_cols=80 Identities=18% Similarity=0.197 Sum_probs=66.4
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.+++.+++.|||+|||+|..|..+++. .+.|+|+|+|+..+..+++++.. .+++.++++|+..++.
T Consensus 24 ~~~~~~~~~VLEIG~G~G~lt~~L~~~----------~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~-- 89 (258)
T PRK14896 24 YAEDTDGDPVLEIGPGKGALTDELAKR----------AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL-- 89 (258)
T ss_pred hcCCCCcCeEEEEeCccCHHHHHHHHh----------CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc--
Confidence 456788999999999999999999875 24799999999999999888754 4689999999976531
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTG 275 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG 275 (646)
..||.|+++.|..-
T Consensus 90 ----------~~~d~Vv~NlPy~i 103 (258)
T PRK14896 90 ----------PEFNKVVSNLPYQI 103 (258)
T ss_pred ----------hhceEEEEcCCccc
Confidence 24899999999653
No 153
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.22 E-value=5.1e-06 Score=84.77 Aligned_cols=127 Identities=16% Similarity=0.178 Sum_probs=97.9
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGN 258 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~ 258 (646)
..+||+|+|.|..++++|..- |.-.++|+|+....+..+...+++.+++|+.++++||..+.....
T Consensus 50 pi~lEIGfG~G~~l~~~A~~n--------P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~------ 115 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKN--------PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI------ 115 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHC--------CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC------
Confidence 479999999999999999873 677899999999999999999999999999999999987654332
Q ss_pred CCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHH
Q psy17365 259 KVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLI 338 (646)
Q Consensus 259 ~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L 338 (646)
..+..|+|.+.=| +|.-..+-...+ -+|...|....+.|||||.|-+.| .++....+.+
T Consensus 116 -~~~sl~~I~i~FP---------DPWpKkRH~KRR-----l~~~~fl~~~a~~Lk~gG~l~~aT------D~~~y~e~~~ 174 (227)
T COG0220 116 -PDGSLDKIYINFP---------DPWPKKRHHKRR-----LTQPEFLKLYARKLKPGGVLHFAT------DNEEYFEWMM 174 (227)
T ss_pred -CCCCeeEEEEECC---------CCCCCccccccc-----cCCHHHHHHHHHHccCCCEEEEEe------cCHHHHHHHH
Confidence 1236888888765 333322211122 246678999999999999999988 6777777744
Q ss_pred HH
Q psy17365 339 VE 340 (646)
Q Consensus 339 ~~ 340 (646)
..
T Consensus 175 ~~ 176 (227)
T COG0220 175 LE 176 (227)
T ss_pred HH
Confidence 33
No 154
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=98.20 E-value=4.4e-07 Score=79.56 Aligned_cols=99 Identities=16% Similarity=0.205 Sum_probs=60.1
Q ss_pred EEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCC
Q psy17365 182 LDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVP 261 (646)
Q Consensus 182 LDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~ 261 (646)
||++||+|..+..+++.. +.+.++++|+|+..+..+++++...+..+......+....... ...
T Consensus 1 LdiGcG~G~~~~~l~~~~--------~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~ 64 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEEL--------PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY--------DPP 64 (99)
T ss_dssp -EESTTTS-TTTTHHHHC---------EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C--------CC-
T ss_pred CEeCccChHHHHHHHHhC--------CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc--------ccc
Confidence 799999999999999875 4789999999999998888888887766555554444332211 011
Q ss_pred CCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeE
Q psy17365 262 MKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKI 318 (646)
Q Consensus 262 ~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~L 318 (646)
..||.|++- +++..-++ ...+|.++.++|||||.|
T Consensus 65 ~~fD~V~~~------~vl~~l~~----------------~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 65 ESFDLVVAS------NVLHHLED----------------IEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---SEEEEE-------TTS--S-----------------HHHHHHHHTTT-TSS-EE
T ss_pred cccceehhh------hhHhhhhh----------------HHHHHHHHHHHcCCCCCC
Confidence 489999962 22221122 237899999999999986
No 155
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=98.20 E-value=1.1e-05 Score=90.75 Aligned_cols=113 Identities=19% Similarity=0.087 Sum_probs=78.2
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.+++.++.+|||+|||+|..|..+++. .+.|+|+|+++..+...+... ...+++.+++.|+......
T Consensus 32 ~l~~~~~~~vLDlGcG~G~~~~~la~~----------~~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~~~- 98 (475)
T PLN02336 32 LLPPYEGKSVLELGAGIGRFTGELAKK----------AGQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPDLN- 98 (475)
T ss_pred hcCccCCCEEEEeCCCcCHHHHHHHhh----------CCEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccccC-
Confidence 445567889999999999999998875 348999999999886543311 1246788999998632100
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
.....||.|++..++.-. ++ .....+|.++.++|||||+|++...+
T Consensus 99 -------~~~~~fD~I~~~~~l~~l------~~--------------~~~~~~l~~~~r~Lk~gG~l~~~d~~ 144 (475)
T PLN02336 99 -------ISDGSVDLIFSNWLLMYL------SD--------------KEVENLAERMVKWLKVGGYIFFRESC 144 (475)
T ss_pred -------CCCCCEEEEehhhhHHhC------CH--------------HHHHHHHHHHHHhcCCCeEEEEEecc
Confidence 112579999986542111 10 11247899999999999999876433
No 156
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=98.18 E-value=8.8e-06 Score=85.02 Aligned_cols=98 Identities=12% Similarity=0.155 Sum_probs=70.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.++.+|||+|||+|..+..++..+... ....|+++|+|+..+..+.++ .+++.+..+|+..+|.
T Consensus 84 ~~~~~vLDiGcG~G~~~~~l~~~~~~~-----~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp~------ 147 (272)
T PRK11088 84 EKATALLDIGCGEGYYTHALADALPEI-----TTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLPF------ 147 (272)
T ss_pred CCCCeEEEECCcCCHHHHHHHHhcccc-----cCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCCC------
Confidence 456789999999999999998875310 123799999999988877543 3567888888877652
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
....||.|++-- .|. .+.+..++|||||+++.++
T Consensus 148 ----~~~sfD~I~~~~----------~~~-------------------~~~e~~rvLkpgG~li~~~ 181 (272)
T PRK11088 148 ----ADQSLDAIIRIY----------APC-------------------KAEELARVVKPGGIVITVT 181 (272)
T ss_pred ----cCCceeEEEEec----------CCC-------------------CHHHHHhhccCCCEEEEEe
Confidence 124799998510 011 1345678899999999764
No 157
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.18 E-value=1.8e-05 Score=79.68 Aligned_cols=104 Identities=13% Similarity=0.142 Sum_probs=74.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCcccccc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~ 253 (646)
+.++.+|||+|||+|..+..++.. ...|+|+|+++..+..+++++...+. .++.+...|+..++
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~----------~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----- 117 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKR----------GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC----- 117 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC-----
Confidence 456889999999999999888753 34899999999999999999887765 46888888876542
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
..||.|++-- ++. .+.. ..+..++.++.+++++|+.+.++
T Consensus 118 --------~~fD~ii~~~------~l~-------~~~~-------~~~~~~l~~i~~~~~~~~~i~~~ 157 (219)
T TIGR02021 118 --------GEFDIVVCMD------VLI-------HYPA-------SDMAKALGHLASLTKERVIFTFA 157 (219)
T ss_pred --------CCcCEEEEhh------HHH-------hCCH-------HHHHHHHHHHHHHhCCCEEEEEC
Confidence 3699998611 111 1111 12345778888888876665544
No 158
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.17 E-value=2e-05 Score=78.07 Aligned_cols=141 Identities=21% Similarity=0.299 Sum_probs=99.8
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+.+++|++||=++||+|...+|++... +.|.|+|+|.++.-...|..-+++ -+|+..+.+||+.......
T Consensus 72 ~pi~~g~~VLYLGAasGTTvSHVSDIv--------~~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~P~~Y~~ 141 (231)
T COG1889 72 FPIKEGSKVLYLGAASGTTVSHVSDIV--------GEGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARKPEKYRH 141 (231)
T ss_pred CCcCCCCEEEEeeccCCCcHhHHHhcc--------CCCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCCcHHhhh
Confidence 347899999999999999999999986 489999999999988877776664 4688999999976432211
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHH-HHHHHhhccCCeEE--EEcCCCCccc
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIV-KRGVEMLAVGGKIA--YSTCSLNPLE 329 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL-~~A~~lLKpGG~LV--YSTCSl~p~E 329 (646)
.-+..|.|..|+- . .-|.+|+ .+|-.+||+||.++ .=+-|+..-+
T Consensus 142 -------~Ve~VDviy~DVA---------Q----------------p~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~ 189 (231)
T COG1889 142 -------LVEKVDVIYQDVA---------Q----------------PNQAEILADNAEFFLKKGGYVVIAIKARSIDVTA 189 (231)
T ss_pred -------hcccccEEEEecC---------C----------------chHHHHHHHHHHHhcccCCeEEEEEEeecccccC
Confidence 1256999999985 2 2355555 46788999999554 4455665544
Q ss_pred c-HHHHHHHHHHc-cCcEEEeeccccCC
Q psy17365 330 D-EAVIQRLIVET-QGAVQLVDVSAITP 355 (646)
Q Consensus 330 N-E~VV~~~L~~~-~~~~elv~~~~~lp 355 (646)
+ ++|.+.-+++. .+.|++++.-+.-|
T Consensus 190 dp~~vf~~ev~kL~~~~f~i~e~~~LeP 217 (231)
T COG1889 190 DPEEVFKDEVEKLEEGGFEILEVVDLEP 217 (231)
T ss_pred CHHHHHHHHHHHHHhcCceeeEEeccCC
Confidence 4 55555444432 23477776654444
No 159
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.17 E-value=4.3e-06 Score=88.62 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=70.4
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEecCCCCCcc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-SPCAIITNHDASVMPN 249 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~~ni~v~~~Da~~~p~ 249 (646)
..+++.+++.|||+|||+|..|..+++. .+.|+|+|+|+..+..+++++...+ ..++.++++|+..+.
T Consensus 30 ~~~~~~~~~~VLEIG~G~G~LT~~Ll~~----------~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~- 98 (294)
T PTZ00338 30 EKAAIKPTDTVLEIGPGTGNLTEKLLQL----------AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTE- 98 (294)
T ss_pred HhcCCCCcCEEEEecCchHHHHHHHHHh----------CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhc-
Confidence 3456789999999999999999998875 3579999999999999999998776 578999999997642
Q ss_pred ccccCCCCCCCCCCCCeeecCCCCCCC
Q psy17365 250 VLYTDADGNKVPMKFDRVLCDVPCTGD 276 (646)
Q Consensus 250 ~~~~~~~g~~~~~~FD~IL~D~PCSG~ 276 (646)
...||.|+++.|....
T Consensus 99 -----------~~~~d~VvaNlPY~Is 114 (294)
T PTZ00338 99 -----------FPYFDVCVANVPYQIS 114 (294)
T ss_pred -----------ccccCEEEecCCcccC
Confidence 1358999999997654
No 160
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=98.16 E-value=1.7e-05 Score=82.77 Aligned_cols=113 Identities=15% Similarity=0.183 Sum_probs=73.9
Q ss_pred CCCCeEEEEcCCCch----HHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHH---H-cCC-------------
Q psy17365 176 QTHHKVLDMCAAPGS----KTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAK---R-LNS------------- 234 (646)
Q Consensus 176 ~pg~~VLDmCAaPGg----KT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~---r-lg~------------- 234 (646)
.++.+|||+|||+|- .+..+++.+... ......|+|.|+|+..++.+++.+- . -++
T Consensus 98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~---~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~ 174 (264)
T smart00138 98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKA---REPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVE 174 (264)
T ss_pred CCCEEEEeccccCChHHHHHHHHHHHHhhhc---CCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCC
Confidence 456799999999995 455555544210 0125689999999999998877531 0 011
Q ss_pred ----------CCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHH
Q psy17365 235 ----------PCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRI 304 (646)
Q Consensus 235 ----------~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~I 304 (646)
.+|.+..+|+...+. ....||.|+|- .++ ..+. ...|.++
T Consensus 175 ~~~~v~~~ir~~V~F~~~dl~~~~~----------~~~~fD~I~cr------nvl-------~yf~-------~~~~~~~ 224 (264)
T smart00138 175 DKYRVKPELKERVRFAKHNLLAESP----------PLGDFDLIFCR------NVL-------IYFD-------EPTQRKL 224 (264)
T ss_pred CeEEEChHHhCcCEEeeccCCCCCC----------ccCCCCEEEec------hhH-------HhCC-------HHHHHHH
Confidence 246777777765431 12579999971 111 0111 1346789
Q ss_pred HHHHHHhhccCCeEEEE
Q psy17365 305 VKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 305 L~~A~~lLKpGG~LVYS 321 (646)
+.+..+.|+|||.|+..
T Consensus 225 l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 225 LNRFAEALKPGGYLFLG 241 (264)
T ss_pred HHHHHHHhCCCeEEEEE
Confidence 99999999999999975
No 161
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.14 E-value=2.7e-05 Score=83.37 Aligned_cols=147 Identities=14% Similarity=0.116 Sum_probs=91.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCC-eEEE-ecCCCCCccccc
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL-NSPC-AIIT-NHDASVMPNVLY 252 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl-g~~n-i~v~-~~Da~~~p~~~~ 252 (646)
.++.+|||+|||+|+....|+... +...++|+|+|+..++.+++|++++ ++.+ |.+. +.|...+.....
T Consensus 113 ~~~~~vLDIGtGag~I~~lLa~~~--------~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~ 184 (321)
T PRK11727 113 GANVRVLDIGVGANCIYPLIGVHE--------YGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII 184 (321)
T ss_pred CCCceEEEecCCccHHHHHHHhhC--------CCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc
Confidence 356799999999999888887654 3568999999999999999999998 6754 5554 334333221000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccc------------cCcc---cc-------ccCCcchhhhhHHHHHHHHHHHHH
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMR------------KNPD---IW-------TKWTPSNGNNLHGIQYRIVKRGVE 310 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lr------------k~pd---~~-------~~w~~~~~~~l~~lQ~~IL~~A~~ 310 (646)
.....||.|+|+||.-..+.-. ++++ .. .-|.+..- ..+-.+++..+..
T Consensus 185 ------~~~~~fDlivcNPPf~~s~~ea~~~~~rk~r~~ar~~~~~~~l~f~g~~~EL~~~GGe---~~fi~~mi~eS~~ 255 (321)
T PRK11727 185 ------HKNERFDATLCNPPFHASAAEARAGSQRKLRNLGLNKDKKKVLNFGGQQAELWCEGGE---VAFIKRMIEESKA 255 (321)
T ss_pred ------ccCCceEEEEeCCCCcCcchhhccchhhHHhhhhccCCCccccCCcchhhheeeCCcE---eeeehHhhHHHHH
Confidence 1135799999999987665421 0111 00 00111111 1233456666666
Q ss_pred hhccCCeEEEEcCCCCccccHHHHHHHHHHcc
Q psy17365 311 MLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 311 lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~ 342 (646)
+++..|.. ||-+...+|-..|.+.|++.+
T Consensus 256 ~~~~~gwf---tsmv~kk~~l~~l~~~L~~~~ 284 (321)
T PRK11727 256 FAKQVLWF---TSLVSKKENLPPLYRALKKVG 284 (321)
T ss_pred HHhhCcEE---EEEeeccCCHHHHHHHHHHcC
Confidence 66665532 244555667777777777665
No 162
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.13 E-value=1.5e-05 Score=79.33 Aligned_cols=103 Identities=17% Similarity=0.113 Sum_probs=73.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
+..+|||++||.|.-+..||+. .-.|+|+|+|+..++.+.+.+++.+++ |.+...|...+.-
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~----------G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~~~~------- 91 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQ----------GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLNDFDF------- 91 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHT----------T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCCBS--------
T ss_pred CCCcEEEcCCCCcHHHHHHHHC----------CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchhccc-------
Confidence 4559999999999999999975 237999999999999999988888877 8888888755421
Q ss_pred CCCCCCCCCeeecCCCCCCCccccc-CccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRK-NPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk-~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
...||.|++.+ ++.. +++. ..+|+....+.++|||++++.|
T Consensus 92 ----~~~yD~I~st~------v~~fL~~~~---------------~~~i~~~m~~~~~pGG~~li~~ 133 (192)
T PF03848_consen 92 ----PEEYDFIVSTV------VFMFLQREL---------------RPQIIENMKAATKPGGYNLIVT 133 (192)
T ss_dssp ----TTTEEEEEEES------SGGGS-GGG---------------HHHHHHHHHHTEEEEEEEEEEE
T ss_pred ----cCCcCEEEEEE------EeccCCHHH---------------HHHHHHHHHhhcCCcEEEEEEE
Confidence 24699998632 1211 1221 1357777888999999999853
No 163
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.12 E-value=4.7e-06 Score=78.54 Aligned_cols=99 Identities=21% Similarity=0.278 Sum_probs=69.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
..++.+|||++||.|..+..++.. +. .++++|+++..+.. .++...+.+....+
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~---------~~-~~~g~D~~~~~~~~----------~~~~~~~~~~~~~~------ 73 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKR---------GF-EVTGVDISPQMIEK----------RNVVFDNFDAQDPP------ 73 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHT---------TS-EEEEEESSHHHHHH----------TTSEEEEEECHTHH------
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHh---------CC-EEEEEECCHHHHhh----------hhhhhhhhhhhhhh------
Confidence 467889999999999988888543 23 89999999998776 33444444333211
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL 325 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl 325 (646)
.....||.|+|- .++..-++ -..+|....++|||||+++.++-..
T Consensus 74 ----~~~~~fD~i~~~------~~l~~~~d----------------~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 74 ----FPDGSFDLIICN------DVLEHLPD----------------PEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp ----CHSSSEEEEEEE------SSGGGSSH----------------HHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred ----ccccchhhHhhH------HHHhhccc----------------HHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 113579999973 23333333 2378999999999999999887543
No 164
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.12 E-value=1.8e-05 Score=80.06 Aligned_cols=111 Identities=12% Similarity=0.033 Sum_probs=73.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHH------------HcCCCCeEEEecC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAK------------RLNSPCAIITNHD 243 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~------------rlg~~ni~v~~~D 243 (646)
.++.+|||++||.|.-+..||+. .-.|+|+|+|+..++.+..... +....+|.+.++|
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~----------G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D 102 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQ----------GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGD 102 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhC----------CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEcc
Confidence 46779999999999999999864 2379999999999997633211 1112357778888
Q ss_pred CCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 244 ASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 244 a~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
+..++... ...||.|+--+-.. . -.|+ ...+.+....++|||||++++.|=
T Consensus 103 ~~~~~~~~---------~~~fD~i~D~~~~~---~--l~~~---------------~R~~~~~~l~~lLkpgG~~ll~~~ 153 (213)
T TIGR03840 103 FFALTAAD---------LGPVDAVYDRAALI---A--LPEE---------------MRQRYAAHLLALLPPGARQLLITL 153 (213)
T ss_pred CCCCCccc---------CCCcCEEEechhhc---c--CCHH---------------HHHHHHHHHHHHcCCCCeEEEEEE
Confidence 87654210 13578775321100 0 0122 223578889999999998777765
Q ss_pred CC
Q psy17365 324 SL 325 (646)
Q Consensus 324 Sl 325 (646)
+.
T Consensus 154 ~~ 155 (213)
T TIGR03840 154 DY 155 (213)
T ss_pred Ec
Confidence 54
No 165
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.09 E-value=4.9e-06 Score=81.26 Aligned_cols=99 Identities=16% Similarity=0.136 Sum_probs=81.1
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGN 258 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~ 258 (646)
+.+.|++||+|-.+..+|+. .-+|+|+|.+++|...+.+|++-.|..|+.++++||..+.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~----------A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~---------- 93 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA----------AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYD---------- 93 (252)
T ss_pred hceeeccCCcchHHHHHHhh----------hceEEEEecCcHHHHHhhhcCCCCCCcceEEEeccccccc----------
Confidence 68999999999998877765 4589999999999999999998889999999999998753
Q ss_pred CCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE
Q psy17365 259 KVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319 (646)
Q Consensus 259 ~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV 319 (646)
.+..|.|+|..- +-.-+..-|...+.+++++||..|+++
T Consensus 94 --fe~ADvvicEml--------------------DTaLi~E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 94 --FENADVVICEML--------------------DTALIEEKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred --ccccceeHHHHh--------------------hHHhhcccccHHHHHHHHHhhcCCccc
Confidence 246799988421 122234567889999999999999886
No 166
>KOG1270|consensus
Probab=98.08 E-value=1.1e-05 Score=82.72 Aligned_cols=103 Identities=16% Similarity=0.194 Sum_probs=71.3
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC------eEEEecCCCCCc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC------AIITNHDASVMP 248 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n------i~v~~~Da~~~p 248 (646)
+--|.+|||++||.|-.|.+||.+ ...|+|+|++.+.++.+++..+.....+ +...+.|+...
T Consensus 87 ~~~g~~ilDvGCGgGLLSepLArl----------ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~- 155 (282)
T KOG1270|consen 87 PLLGMKILDVGCGGGLLSEPLARL----------GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGL- 155 (282)
T ss_pred ccCCceEEEeccCccccchhhHhh----------CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhc-
Confidence 344788999999999999999976 3689999999999999988733222111 22223333221
Q ss_pred cccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 249 NVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 249 ~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
...||.|+|- ++ +..... -..++....++|||||+|+.||
T Consensus 156 ------------~~~fDaVvcs-------------ev--------leHV~d-p~~~l~~l~~~lkP~G~lfitt 195 (282)
T KOG1270|consen 156 ------------TGKFDAVVCS-------------EV--------LEHVKD-PQEFLNCLSALLKPNGRLFITT 195 (282)
T ss_pred ------------ccccceeeeH-------------HH--------HHHHhC-HHHHHHHHHHHhCCCCceEeee
Confidence 2469999971 11 111112 2378899999999999999997
No 167
>KOG1663|consensus
Probab=98.06 E-value=2.5e-05 Score=78.84 Aligned_cols=148 Identities=17% Similarity=0.179 Sum_probs=103.4
Q ss_pred ccchhhhhhhhhhhccc-ccccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEc
Q psy17365 138 RTSQAFSKLHQFLIMEN-ATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAND 216 (646)
Q Consensus 138 ~~~~~~~~~~~fl~~~~-~~G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~D 216 (646)
+..+.++++.++-.... ....+.+=+...++...++..-...++||++.-+|.-++..|..+. ..|+|+|+|
T Consensus 33 ~e~~~l~el~e~t~~~~~~~~~m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp-------~dGrv~a~e 105 (237)
T KOG1663|consen 33 REPELLKELREATLTYPQPGSEMLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALP-------EDGRVVAIE 105 (237)
T ss_pred CCcHHHHHHHHHHhhcCCcccceecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcC-------CCceEEEEe
Confidence 34455566655432221 2223334444445555556666677999999999999999888885 589999999
Q ss_pred CCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhh
Q psy17365 217 VDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGN 295 (646)
Q Consensus 217 is~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~ 295 (646)
++....++...-.+..|+. .|.++.++|..-..... .++ ....||.+++|+ |...
T Consensus 106 id~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~--~~~--~~~tfDfaFvDa-----------------dK~n--- 161 (237)
T KOG1663|consen 106 IDADAYEIGLELVKLAGVDHKITFIEGPALESLDELL--ADG--ESGTFDFAFVDA-----------------DKDN--- 161 (237)
T ss_pred cChHHHHHhHHHHHhccccceeeeeecchhhhHHHHH--hcC--CCCceeEEEEcc-----------------chHH---
Confidence 9999999998888888875 47788888765322111 122 246899999995 2222
Q ss_pred hhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 296 NLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 296 ~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
......++++|+|+||.|++-
T Consensus 162 -----Y~~y~e~~l~Llr~GGvi~~D 182 (237)
T KOG1663|consen 162 -----YSNYYERLLRLLRVGGVIVVD 182 (237)
T ss_pred -----HHHHHHHHHhhcccccEEEEe
Confidence 226688999999999999985
No 168
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=98.06 E-value=1.4e-05 Score=79.88 Aligned_cols=101 Identities=20% Similarity=0.320 Sum_probs=79.0
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
+.+-.+|.|++||||.-|..|++.. |...|+++|.|+.+++.+.+ ..+++.+..+|...+-
T Consensus 28 ~~~~~~v~DLGCGpGnsTelL~~Rw--------P~A~i~GiDsS~~Mla~Aa~-----rlp~~~f~~aDl~~w~------ 88 (257)
T COG4106 28 LERPRRVVDLGCGPGNSTELLARRW--------PDAVITGIDSSPAMLAKAAQ-----RLPDATFEEADLRTWK------ 88 (257)
T ss_pred ccccceeeecCCCCCHHHHHHHHhC--------CCCeEeeccCCHHHHHHHHH-----hCCCCceecccHhhcC------
Confidence 4566799999999999999999987 68899999999998877643 3577888889987752
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
....+|+|+.++- ..|-++.. ++|.+-+..|.|||.|..-
T Consensus 89 -----p~~~~dllfaNAv--------------lqWlpdH~--------~ll~rL~~~L~Pgg~LAVQ 128 (257)
T COG4106 89 -----PEQPTDLLFANAV--------------LQWLPDHP--------ELLPRLVSQLAPGGVLAVQ 128 (257)
T ss_pred -----CCCccchhhhhhh--------------hhhccccH--------HHHHHHHHhhCCCceEEEE
Confidence 2346899988763 24555433 6788889999999999743
No 169
>KOG1661|consensus
Probab=98.04 E-value=8e-05 Score=74.27 Aligned_cols=101 Identities=15% Similarity=0.103 Sum_probs=76.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcE-EEEEcCCHHHHHHHHHHHHHcC----------CCCeEEEecC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGL-VVANDVDNNRCYMLVHQAKRLN----------SPCAIITNHD 243 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~-VvA~Dis~~Rl~~L~~n~~rlg----------~~ni~v~~~D 243 (646)
++||...||+++|+|..|+..+.+++ .+|. ++++|..++-++..++|+...- ...+.++.+|
T Consensus 80 L~pG~s~LdvGsGSGYLt~~~~~mvg-------~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD 152 (237)
T KOG1661|consen 80 LQPGASFLDVGSGSGYLTACFARMVG-------ATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD 152 (237)
T ss_pred hccCcceeecCCCccHHHHHHHHHhc-------CCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC
Confidence 78999999999999999999998886 3554 4999999999999999986542 2346666777
Q ss_pred CCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 244 ASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 244 a~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
....- ....+||+|-|-|-- + ++.++-+..|++||+||.
T Consensus 153 gr~g~----------~e~a~YDaIhvGAaa---------~-------------------~~pq~l~dqL~~gGrlli 191 (237)
T KOG1661|consen 153 GRKGY----------AEQAPYDAIHVGAAA---------S-------------------ELPQELLDQLKPGGRLLI 191 (237)
T ss_pred ccccC----------CccCCcceEEEccCc---------c-------------------ccHHHHHHhhccCCeEEE
Confidence 65432 234689999996531 1 245566788999999984
No 170
>KOG2187|consensus
Probab=98.03 E-value=9.4e-06 Score=89.92 Aligned_cols=116 Identities=14% Similarity=0.173 Sum_probs=85.4
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCC-cc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVM-PN 249 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~-p~ 249 (646)
..+++.++..+||+|||+|.....+|. +.+.|+++|++++.+.-++.|++.+|+.|..++++.|..+ +.
T Consensus 377 e~~~l~~~k~llDv~CGTG~iglala~----------~~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gqaE~~~~s 446 (534)
T KOG2187|consen 377 EWAGLPADKTLLDVCCGTGTIGLALAR----------GVKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQAEDLFPS 446 (534)
T ss_pred HHhCCCCCcEEEEEeecCCceehhhhc----------cccceeeeecChhhcchhhhcchhcCccceeeeecchhhccch
Confidence 345777889999999999998888775 3679999999999999999999999999999999966654 32
Q ss_pred ccccCCCCCCCCCCCC-eeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCc
Q psy17365 250 VLYTDADGNKVPMKFD-RVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNP 327 (646)
Q Consensus 250 ~~~~~~~g~~~~~~FD-~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p 327 (646)
+... ....=+ .+++|||-.|.- .++..+++-.+.--+|||.+|....
T Consensus 447 l~~~------~~~~~~~v~iiDPpR~Glh-------------------------~~~ik~l~~~~~~~rlvyvSCn~~t 494 (534)
T KOG2187|consen 447 LLTP------CCDSETLVAIIDPPRKGLH-------------------------MKVIKALRAYKNPRRLVYVSCNPHT 494 (534)
T ss_pred hccc------CCCCCceEEEECCCccccc-------------------------HHHHHHHHhccCccceEEEEcCHHH
Confidence 2210 001234 788899965532 1233444445534789999998754
No 171
>KOG1271|consensus
Probab=98.02 E-value=2.1e-05 Score=76.73 Aligned_cols=118 Identities=19% Similarity=0.172 Sum_probs=83.2
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCCCccccccCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASVMPNVLYTDADGN 258 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~~~~g~ 258 (646)
+|||++||.|..-.+|++.- -.+.++++|-+++.++++.+-++|-+.+| |.+...|.... .
T Consensus 70 ~VlDLGtGNG~~L~~L~~eg--------f~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~-~--------- 131 (227)
T KOG1271|consen 70 RVLDLGTGNGHLLFQLAKEG--------FQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP-D--------- 131 (227)
T ss_pred ceeeccCCchHHHHHHHHhc--------CCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC-c---------
Confidence 89999999999888887652 35679999999999999999899999998 88888887653 1
Q ss_pred CCCCCCCeeecCCCCCCCcccc---cCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHH
Q psy17365 259 KVPMKFDRVLCDVPCTGDGTMR---KNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEA 332 (646)
Q Consensus 259 ~~~~~FD~IL~D~PCSG~G~lr---k~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~ 332 (646)
....+||+||= -||+. -.|+-... ++ . --+...-++|+|||++|.++|-+...|=..
T Consensus 132 ~~~~qfdlvlD------KGT~DAisLs~d~~~~-------r~-~---~Y~d~v~~ll~~~gifvItSCN~T~dELv~ 191 (227)
T KOG1271|consen 132 FLSGQFDLVLD------KGTLDAISLSPDGPVG-------RL-V---VYLDSVEKLLSPGGIFVITSCNFTKDELVE 191 (227)
T ss_pred ccccceeEEee------cCceeeeecCCCCccc-------ce-e---eehhhHhhccCCCcEEEEEecCccHHHHHH
Confidence 22357887762 23321 12221100 00 1 125556678999999999999997655433
No 172
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.01 E-value=4.8e-05 Score=86.83 Aligned_cols=169 Identities=12% Similarity=0.042 Sum_probs=97.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+|||.|||+|+..++++..+........-.-.++|+|+++..+..+..++..++...+.+.+.|.........
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~---- 106 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNI---- 106 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccc----
Confidence 3468999999999999999988742111000124689999999999999999887763334555555432211000
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccC------------ccccc---cC-----Ccch----hhhhHHHHHHHH-HHHHHh
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKN------------PDIWT---KW-----TPSN----GNNLHGIQYRIV-KRGVEM 311 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~------------pd~~~---~w-----~~~~----~~~l~~lQ~~IL-~~A~~l 311 (646)
. .....||.|+.+||....-...+. ++... .| .... ..+...+...++ ..|+++
T Consensus 107 ~-~~~~~fD~IIgNPPy~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~y~~~f~~~~~~l 185 (524)
T TIGR02987 107 E-SYLDLFDIVITNPPYGRLKPDKKELTNIETLEYEKYIDFLKEFDDLLSRVLPYSDPIRKYAGVGTEYSRVFEEISLEI 185 (524)
T ss_pred c-cccCcccEEEeCCCccccCcchhhhhhhhhhhhhhhhHHHHHHHHHHHhhcchhhhhcccCCcccHHHHHHHHHHHHh
Confidence 0 112479999999998765422111 00000 00 0000 011223344444 679999
Q ss_pred hccCCeEEEEcCC-CCccccHHHHHHHHHHccCcEEEeec
Q psy17365 312 LAVGGKIAYSTCS-LNPLEDEAVIQRLIVETQGAVQLVDV 350 (646)
Q Consensus 312 LKpGG~LVYSTCS-l~p~ENE~VV~~~L~~~~~~~elv~~ 350 (646)
|++||++.+.+-+ +........+.+.|-++..-..+++.
T Consensus 186 L~~~G~~~~I~P~s~l~~~~~~~lR~~ll~~~~i~~I~~f 225 (524)
T TIGR02987 186 ANKNGYVSIISPASWLGDKTGENLREYIFNNRLINCIQYF 225 (524)
T ss_pred cCCCCEEEEEEChHHhcCccHHHHHHHHHhCCeeEEEEEC
Confidence 9999999987655 33334454566555444322334444
No 173
>PLN02366 spermidine synthase
Probab=98.01 E-value=6.5e-05 Score=80.17 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=78.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc----CCCCeEEEecCCCCCccccc
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL----NSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl----g~~ni~v~~~Da~~~p~~~~ 252 (646)
...+||++|+|.|+.+..++.. . +...|+.+|+|+.-++.+++.+... .-+++.++.+|+..+....
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~-~-------~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~- 161 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARH-S-------SVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA- 161 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhC-C-------CCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-
Confidence 3568999999999988777643 1 2468999999999999988877543 2357999999987653210
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
....||+|++|.+-. .| | ..+-...+.++.+.+.|+|||.+|.
T Consensus 162 -------~~~~yDvIi~D~~dp-~~-----~------------~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 162 -------PEGTYDAIIVDSSDP-VG-----P------------AQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred -------cCCCCCEEEEcCCCC-CC-----c------------hhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 024799999997621 11 1 0011235778899999999999874
No 174
>PRK10742 putative methyltransferase; Provisional
Probab=97.97 E-value=1.6e-05 Score=81.67 Aligned_cols=89 Identities=10% Similarity=-0.009 Sum_probs=72.1
Q ss_pred cccccccCCCCCC--eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc------CC---C
Q psy17365 167 MIPPLLLDVQTHH--KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL------NS---P 235 (646)
Q Consensus 167 ml~~~~Ld~~pg~--~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl------g~---~ 235 (646)
...+.++.+++|. +|||++||.|.-+..+|.+ .+.|+++|.++.-+.+|.++++++ +. .
T Consensus 76 ~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~----------G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ 145 (250)
T PRK10742 76 EAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV----------GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQE 145 (250)
T ss_pred cHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc----------CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhc
Confidence 3446677889998 9999999999999998876 345999999999999999999996 32 5
Q ss_pred CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCC
Q psy17365 236 CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCT 274 (646)
Q Consensus 236 ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCS 274 (646)
++.++++|+..+.... ...||+|.+|||..
T Consensus 146 ri~l~~~da~~~L~~~---------~~~fDVVYlDPMfp 175 (250)
T PRK10742 146 RLQLIHASSLTALTDI---------TPRPQVVYLDPMFP 175 (250)
T ss_pred eEEEEeCcHHHHHhhC---------CCCCcEEEECCCCC
Confidence 6888999987764321 13699999999944
No 175
>KOG2671|consensus
Probab=97.96 E-value=1.3e-05 Score=84.77 Aligned_cols=139 Identities=21% Similarity=0.257 Sum_probs=97.3
Q ss_pred ccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHH-------HHHHHHHHcCCCC--
Q psy17365 166 SMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCY-------MLVHQAKRLNSPC-- 236 (646)
Q Consensus 166 Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~-------~L~~n~~rlg~~n-- 236 (646)
|.+.+....++||+.|+|-..|+||.-...|.. .+.|++-|||...+. .++.|.+..|+..
T Consensus 197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F----------Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~f 266 (421)
T KOG2671|consen 197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF----------GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQF 266 (421)
T ss_pred HHHHhhhhccCCCCEEecCccccCceeeehhhh----------cceeeccccchheeecccCCCcchhHhHHHhCCcchh
Confidence 555566667899999999999999987766654 579999999987655 4678888888543
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccC----cccc------c-cCCcchhhhhHHHHHHHH
Q psy17365 237 AIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKN----PDIW------T-KWTPSNGNNLHGIQYRIV 305 (646)
Q Consensus 237 i~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~----pd~~------~-~w~~~~~~~l~~lQ~~IL 305 (646)
+-+..+|.+..|- .....||.|+||||+---.-.+|. +.-. . ..-......+..+-..+|
T Consensus 267 ldvl~~D~sn~~~---------rsn~~fDaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll 337 (421)
T KOG2671|consen 267 LDVLTADFSNPPL---------RSNLKFDAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLL 337 (421)
T ss_pred hheeeecccCcch---------hhcceeeEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHH
Confidence 5577788776542 123689999999996321112221 1000 0 011234456777888999
Q ss_pred HHHHHhhccCCeEEEEcCCCC
Q psy17365 306 KRGVEMLAVGGKIAYSTCSLN 326 (646)
Q Consensus 306 ~~A~~lLKpGG~LVYSTCSl~ 326 (646)
.-+.+.|..||+|| |-+.
T Consensus 338 ~fss~~L~~ggrlv---~w~p 355 (421)
T KOG2671|consen 338 CFSSRRLVDGGRLV---FWLP 355 (421)
T ss_pred HhhHhhhhcCceEE---EecC
Confidence 99999999999999 5554
No 176
>KOG1099|consensus
Probab=97.94 E-value=4.7e-05 Score=76.63 Aligned_cols=138 Identities=18% Similarity=0.193 Sum_probs=86.0
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCC-CCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc--ccCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADS-NPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL--YTDA 255 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~-~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~--~~~~ 255 (646)
.+|+|+|||||+++..|++.+..... .......|||+|+.+-. .++.|.-+.+|.+...... +...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma-----------PI~GV~qlq~DIT~~stae~Ii~hf 111 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA-----------PIEGVIQLQGDITSASTAEAIIEHF 111 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC-----------ccCceEEeecccCCHhHHHHHHHHh
Confidence 47999999999999999988853111 00011259999987642 5677888899987642110 0001
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhH--HHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHH
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLH--GIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAV 333 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~--~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~V 333 (646)
. .++.|.|+||. .||+-. ..++.+.. ++-...|.-+...||+||.+| --+...++-..
T Consensus 112 g----gekAdlVvcDG----------APDvTG---lHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FV---aKifRg~~tsl 171 (294)
T KOG1099|consen 112 G----GEKADLVVCDG----------APDVTG---LHDLDEYVQAQLLLAALNIATCVLKPGGSFV---AKIFRGRDTSL 171 (294)
T ss_pred C----CCCccEEEeCC----------CCCccc---cccHHHHHHHHHHHHHHHHHhheecCCCeee---hhhhccCchHH
Confidence 1 25789999994 244411 12222222 222334444556899999999 56888888888
Q ss_pred HHHHHHHccCcEEE
Q psy17365 334 IQRLIVETQGAVQL 347 (646)
Q Consensus 334 V~~~L~~~~~~~el 347 (646)
+..-|+.+-..+.+
T Consensus 172 Lysql~~ff~kv~~ 185 (294)
T KOG1099|consen 172 LYSQLRKFFKKVTC 185 (294)
T ss_pred HHHHHHHHhhceee
Confidence 77777765433444
No 177
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=97.92 E-value=1.5e-05 Score=83.50 Aligned_cols=81 Identities=19% Similarity=0.188 Sum_probs=64.3
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.+++.++++|||+|||+|..|..+++.. +.|+|+|+|+..++.+++++.. +++.++++|+..++...
T Consensus 37 ~l~~~~~~~VLEiG~G~G~lt~~L~~~~----------~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 37 AAGPQPGDNVLEIGPGLGALTEPLLERA----------AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE 103 (272)
T ss_pred hcCCCCcCeEEEeCCCccHHHHHHHHhC----------CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH
Confidence 4567889999999999999999998762 3899999999999999876542 68999999998764210
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTG 275 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG 275 (646)
..+|.|+.++|..-
T Consensus 104 ----------~~~~~vv~NlPY~i 117 (272)
T PRK00274 104 ----------LQPLKVVANLPYNI 117 (272)
T ss_pred ----------cCcceEEEeCCccc
Confidence 11689999999543
No 178
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.88 E-value=0.00016 Score=75.90 Aligned_cols=91 Identities=18% Similarity=0.210 Sum_probs=70.6
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
..|.++|+...+|..-|-||.|..+++.+. +.|.++|+|.|+..++.+++.++.++ .++.+++.....+...
T Consensus 17 ~~L~~~~~giyiD~TlG~GGHS~~iL~~l~-------~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~ 88 (314)
T COG0275 17 ELLAPKPDGIYIDGTLGAGGHSRAILEKLP-------DLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEA 88 (314)
T ss_pred HhcccCCCcEEEEecCCCcHhHHHHHHhCC-------CCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHH
Confidence 357889999999999999999999999875 57899999999999999999888776 6788888776655432
Q ss_pred cccCCCCCCCCCCCCeeecCCCCC
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCT 274 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCS 274 (646)
.. ..+ ..++|-||+|-=-|
T Consensus 89 l~--~~~---i~~vDGiL~DLGVS 107 (314)
T COG0275 89 LK--ELG---IGKVDGILLDLGVS 107 (314)
T ss_pred HH--hcC---CCceeEEEEeccCC
Confidence 21 011 25788888875433
No 179
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.88 E-value=0.00012 Score=83.16 Aligned_cols=137 Identities=15% Similarity=0.198 Sum_probs=97.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
..+..+||+|||-|..++++|... |.-.++|+|++..++..+...+.+.|+.|+.+++.|+..+....
T Consensus 346 ~~~p~~lEIG~G~G~~~~~~A~~~--------p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~---- 413 (506)
T PRK01544 346 EKRKVFLEIGFGMGEHFINQAKMN--------PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL---- 413 (506)
T ss_pred CCCceEEEECCCchHHHHHHHHhC--------CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc----
Confidence 356789999999999999999874 67789999999999999999999999999999988876443221
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHH
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQ 335 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~ 335 (646)
....+|.|.+.=| |-|.+-+.... --.|...|....++|||||.|-+.| .++.-..
T Consensus 414 ----~~~sv~~i~i~FP-----------DPWpKkrh~kr---Rl~~~~fl~~~~~~Lk~gG~i~~~T------D~~~y~~ 469 (506)
T PRK01544 414 ----PNNSLDGIYILFP-----------DPWIKNKQKKK---RIFNKERLKILQDKLKDNGNLVFAS------DIENYFY 469 (506)
T ss_pred ----CcccccEEEEECC-----------CCCCCCCCccc---cccCHHHHHHHHHhcCCCCEEEEEc------CCHHHHH
Confidence 1245888888655 43333221111 1134567888899999999998887 4444444
Q ss_pred HHH---HHccCcEEEee
Q psy17365 336 RLI---VETQGAVQLVD 349 (646)
Q Consensus 336 ~~L---~~~~~~~elv~ 349 (646)
+++ .+++ .++++.
T Consensus 470 ~~~~~~~~~~-~f~~~~ 485 (506)
T PRK01544 470 EAIELIQQNG-NFEIIN 485 (506)
T ss_pred HHHHHHHhCC-CeEecc
Confidence 443 3443 366553
No 180
>KOG1098|consensus
Probab=97.85 E-value=2.1e-05 Score=88.30 Aligned_cols=128 Identities=24% Similarity=0.293 Sum_probs=84.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCC----Cccc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASV----MPNV 250 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~----~p~~ 250 (646)
+++++.|||+||||||+...+++.|. ..+.||++|+-+-+ .++|+.....|.+. ++..
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~p-------v~slivGvDl~pik-----------p~~~c~t~v~dIttd~cr~~l~ 103 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMP-------VGSLIVGVDLVPIK-----------PIPNCDTLVEDITTDECRSKLR 103 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCC-------CCceEEEeeeeecc-----------cCCccchhhhhhhHHHHHHHHH
Confidence 46889999999999999888888875 57899999987743 45666555555542 1100
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcccc
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~EN 330 (646)
.. ...-+.|+||.|.- |++-..|. .++..-..|-...|+-|..+|..||.+| --+.+.|.
T Consensus 104 k~------l~t~~advVLhDga----------pnVg~~w~-~DA~~q~~L~l~al~LA~~~l~~~g~fv---tkvfrs~d 163 (780)
T KOG1098|consen 104 KI------LKTWKADVVLHDGA----------PNVGGNWV-QDAFQQACLTLRALKLATEFLAKGGTFV---TKVFRSED 163 (780)
T ss_pred HH------HHhCCCcEEeecCC----------CccchhHH-HHHHHhhHHHHHHHHHHHHHHHhcCccc---cccccCCc
Confidence 00 01235699999852 33333554 3444555666778888999999999977 34556666
Q ss_pred HHHHHHHHHH
Q psy17365 331 EAVIQRLIVE 340 (646)
Q Consensus 331 E~VV~~~L~~ 340 (646)
-.-+.+++..
T Consensus 164 y~~ll~v~~q 173 (780)
T KOG1098|consen 164 YNGLLRVFGQ 173 (780)
T ss_pred chHHHHHHHH
Confidence 5555555543
No 181
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=97.85 E-value=0.00016 Score=72.86 Aligned_cols=72 Identities=21% Similarity=0.207 Sum_probs=57.0
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~~ 254 (646)
.++.+|||+|||+|..+..++.. ...|+++|+++..+..++++....+. .++.+...|....
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~----------~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------- 124 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARR----------GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESL------- 124 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHc----------CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc-------
Confidence 46789999999999999888754 23599999999999999999888776 4677777773211
Q ss_pred CCCCCCCCCCCeeecC
Q psy17365 255 ADGNKVPMKFDRVLCD 270 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D 270 (646)
...||.|++.
T Consensus 125 ------~~~fD~v~~~ 134 (230)
T PRK07580 125 ------LGRFDTVVCL 134 (230)
T ss_pred ------cCCcCEEEEc
Confidence 1469999874
No 182
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=97.84 E-value=0.00016 Score=73.44 Aligned_cols=112 Identities=13% Similarity=0.063 Sum_probs=71.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHH------------HcCCCCeEEEec
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAK------------RLNSPCAIITNH 242 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~------------rlg~~ni~v~~~ 242 (646)
+.++.+|||++||.|--+..||+. .-.|+|+|+++..++.+..... +....+|.+.++
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~----------G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~ 104 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQ----------GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCG 104 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhC----------CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEEC
Confidence 346789999999999999999864 2379999999999887632110 111245677788
Q ss_pred CCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 243 DASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 243 Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
|+..++... ...||.|+-= +++-.-| .....+.+....++|+|||++++.|
T Consensus 105 D~~~l~~~~---------~~~fd~v~D~------~~~~~l~--------------~~~R~~~~~~l~~lL~pgG~~~l~~ 155 (218)
T PRK13255 105 DFFALTAAD---------LADVDAVYDR------AALIALP--------------EEMRERYVQQLAALLPAGCRGLLVT 155 (218)
T ss_pred cccCCCccc---------CCCeeEEEeh------HhHhhCC--------------HHHHHHHHHHHHHHcCCCCeEEEEE
Confidence 877653210 1357777621 1110000 1233567888999999999755443
Q ss_pred CCC
Q psy17365 323 CSL 325 (646)
Q Consensus 323 CSl 325 (646)
=.+
T Consensus 156 ~~~ 158 (218)
T PRK13255 156 LDY 158 (218)
T ss_pred EEe
Confidence 333
No 183
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=97.81 E-value=0.0001 Score=74.01 Aligned_cols=73 Identities=16% Similarity=0.150 Sum_probs=56.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
.+.++.+|||+|||+|..+..+++.+ +.+.++|+|+|+..++.++++. +++.+..+|+.. +.
T Consensus 40 ~~~~~~~VLDiGCG~G~~~~~L~~~~--------~~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~-~~---- 101 (204)
T TIGR03587 40 RLPKIASILELGANIGMNLAALKRLL--------PFKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD-PF---- 101 (204)
T ss_pred hcCCCCcEEEEecCCCHHHHHHHHhC--------CCCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC-CC----
Confidence 45577899999999999999988764 3578999999999999887653 346677778765 21
Q ss_pred CCCCCCCCCCCCeeecC
Q psy17365 254 DADGNKVPMKFDRVLCD 270 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D 270 (646)
....||.|++.
T Consensus 102 ------~~~sfD~V~~~ 112 (204)
T TIGR03587 102 ------KDNFFDLVLTK 112 (204)
T ss_pred ------CCCCEEEEEEC
Confidence 12579999964
No 184
>PRK05785 hypothetical protein; Provisional
Probab=97.81 E-value=0.00012 Score=74.65 Aligned_cols=91 Identities=19% Similarity=0.153 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
++.+|||+|||+|..+..+++.. .+.|+|+|+|+..++.++... ..+++|+..+|-
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~---------~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~------- 106 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF---------KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALPF------- 106 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc---------CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCCC-------
Confidence 46799999999999988887652 368999999999988776431 235678776652
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCC
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGG 316 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG 316 (646)
....||.|++- . +++.-+|. .+.|++..+.|||.+
T Consensus 107 ---~d~sfD~v~~~-----~-~l~~~~d~----------------~~~l~e~~RvLkp~~ 141 (226)
T PRK05785 107 ---RDKSFDVVMSS-----F-ALHASDNI----------------EKVIAEFTRVSRKQV 141 (226)
T ss_pred ---CCCCEEEEEec-----C-hhhccCCH----------------HHHHHHHHHHhcCce
Confidence 12579999972 1 23322222 357899999999953
No 185
>PRK06202 hypothetical protein; Provisional
Probab=97.80 E-value=0.0001 Score=74.98 Aligned_cols=108 Identities=12% Similarity=0.081 Sum_probs=70.4
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
...++.+|||+|||+|..+..|++.+... + +...|+|+|+++..++.++.+.... ++.+...++..++.
T Consensus 57 ~~~~~~~iLDlGcG~G~~~~~L~~~~~~~-g---~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~---- 125 (232)
T PRK06202 57 SADRPLTLLDIGCGGGDLAIDLARWARRD-G---LRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVA---- 125 (232)
T ss_pred CCCCCcEEEEeccCCCHHHHHHHHHHHhC-C---CCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccc----
Confidence 34567899999999999999988765311 1 3458999999999998887765433 34555555544432
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
....||.|++. .++.+-++. .-..+|..+.++++ |.++.
T Consensus 126 ------~~~~fD~V~~~------~~lhh~~d~--------------~~~~~l~~~~r~~~--~~~~i 164 (232)
T PRK06202 126 ------EGERFDVVTSN------HFLHHLDDA--------------EVVRLLADSAALAR--RLVLH 164 (232)
T ss_pred ------cCCCccEEEEC------CeeecCChH--------------HHHHHHHHHHHhcC--eeEEE
Confidence 12579999974 223222221 01367888888887 44443
No 186
>PLN02823 spermine synthase
Probab=97.78 E-value=0.00012 Score=79.00 Aligned_cols=118 Identities=17% Similarity=0.100 Sum_probs=79.4
Q ss_pred ccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc----CCCCeEEEecCCC
Q psy17365 170 PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL----NSPCAIITNHDAS 245 (646)
Q Consensus 170 ~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl----g~~ni~v~~~Da~ 245 (646)
+++..+.| .+||-++.|-|+.+..++..- +...|+++|+|+.-++.+++.+... .-+++.++.+|+.
T Consensus 97 ~l~~~~~p-k~VLiiGgG~G~~~re~l~~~--------~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~ 167 (336)
T PLN02823 97 ALLHHPNP-KTVFIMGGGEGSTAREVLRHK--------TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDAR 167 (336)
T ss_pred HHhhCCCC-CEEEEECCCchHHHHHHHhCC--------CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhH
Confidence 33343433 589999999998887666531 3468999999999999998876532 2367899999998
Q ss_pred CCccccccCCCCCCCCCCCCeeecCCCCCC-CcccccCccccccCCcchhhhhHHHHHHHHH-HHHHhhccCCeEEEEc
Q psy17365 246 VMPNVLYTDADGNKVPMKFDRVLCDVPCTG-DGTMRKNPDIWTKWTPSNGNNLHGIQYRIVK-RGVEMLAVGGKIAYST 322 (646)
Q Consensus 246 ~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG-~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~-~A~~lLKpGG~LVYST 322 (646)
.+... ...+||+|++|++=.. .|. |. +-...+.++ .+.+.|+|||.+|.-.
T Consensus 168 ~~L~~---------~~~~yDvIi~D~~dp~~~~~----~~-------------~Lyt~eF~~~~~~~~L~p~Gvlv~q~ 220 (336)
T PLN02823 168 AELEK---------RDEKFDVIIGDLADPVEGGP----CY-------------QLYTKSFYERIVKPKLNPGGIFVTQA 220 (336)
T ss_pred HHHhh---------CCCCccEEEecCCCccccCc----ch-------------hhccHHHHHHHHHHhcCCCcEEEEec
Confidence 76421 1257999999975110 010 00 011235566 6778999999987543
No 187
>KOG3420|consensus
Probab=97.73 E-value=2.2e-05 Score=73.92 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=74.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.|..++|+|||.|-.+++.+ +. ....|+++|+++..++....|++.+.+. +.+.+.|...+-. .
T Consensus 48 Egkkl~DLgcgcGmLs~a~s--m~-------~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~------~ 111 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFS--MP-------KNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLEL------K 111 (185)
T ss_pred cCcchhhhcCchhhhHHHhh--cC-------CCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhc------c
Confidence 58899999999999885443 21 3568999999999999999999988764 4677777655321 1
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
.+.||.++.||| .||-.+..|. +.+..|+++.. .|||
T Consensus 112 ----~g~fDtaviNpp---FGTk~~~aDm-----------------~fv~~al~~~~----~VyS 148 (185)
T KOG3420|consen 112 ----GGIFDTAVINPP---FGTKKKGADM-----------------EFVSAALKVAS----AVYS 148 (185)
T ss_pred ----CCeEeeEEecCC---CCcccccccH-----------------HHHHHHHHHHH----HHHH
Confidence 257999999999 4654444443 56777877766 4665
No 188
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=97.68 E-value=0.00026 Score=75.84 Aligned_cols=70 Identities=20% Similarity=0.209 Sum_probs=54.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-----CCCeEEEecCCCCCcccc
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-----SPCAIITNHDASVMPNVL 251 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-----~~ni~v~~~Da~~~p~~~ 251 (646)
+|.+|||+|||+|..+..++.. ...|+|+|+++..++.++++++..+ ..++.+...|...+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~----------g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---- 209 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE----------GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---- 209 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC----------CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc----
Confidence 5789999999999999988864 3489999999999999999987653 23456666675432
Q ss_pred ccCCCCCCCCCCCCeeec
Q psy17365 252 YTDADGNKVPMKFDRVLC 269 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~ 269 (646)
...||.|+|
T Consensus 210 ---------~~~fD~Vv~ 218 (315)
T PLN02585 210 ---------SGKYDTVTC 218 (315)
T ss_pred ---------CCCcCEEEE
Confidence 146999986
No 189
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.68 E-value=0.00014 Score=72.11 Aligned_cols=110 Identities=19% Similarity=0.189 Sum_probs=79.6
Q ss_pred ccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCC
Q psy17365 166 SMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDAS 245 (646)
Q Consensus 166 Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~ 245 (646)
|..+..++..... +|+|+|+|.|-=...+|-+. |...++.+|...+|+.-|++-+..+|++|+.+.+..+.
T Consensus 38 SL~~~~~~~~~~~-~~lDiGSGaGfPGipLaI~~--------p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E 108 (184)
T PF02527_consen 38 SLALLPFLPDFGK-KVLDIGSGAGFPGIPLAIAR--------PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAE 108 (184)
T ss_dssp HHGGGGCS-CCCS-EEEEETSTTTTTHHHHHHH---------TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HH
T ss_pred HHHhhhhhccCCc-eEEecCCCCCChhHHHHHhC--------CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeec
Confidence 4344444433322 79999999997777776554 67889999999999999999999999999999999987
Q ss_pred CCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 246 VMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 246 ~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
. +. ....||.|++=|-+ .+ ..++.-+..+|++||+++.-
T Consensus 109 ~-~~----------~~~~fd~v~aRAv~----------------------~l----~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 109 E-PE----------YRESFDVVTARAVA----------------------PL----DKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp H-TT----------TTT-EEEEEEESSS----------------------SH----HHHHHHHGGGEEEEEEEEEE
T ss_pred c-cc----------cCCCccEEEeehhc----------------------CH----HHHHHHHHHhcCCCCEEEEE
Confidence 6 11 13579999874321 01 25788889999999988855
No 190
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=97.68 E-value=0.00011 Score=75.91 Aligned_cols=77 Identities=18% Similarity=0.194 Sum_probs=62.0
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.+++.++++|||+|||+|..|..|++.. ..|+|+|+|+..+..++.++.. .+++.++++|+..++.
T Consensus 24 ~~~~~~~~~VLEiG~G~G~lt~~L~~~~----------~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~~-- 89 (253)
T TIGR00755 24 AANVLEGDVVLEIGPGLGALTEPLLKRA----------KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVDL-- 89 (253)
T ss_pred hcCCCCcCEEEEeCCCCCHHHHHHHHhC----------CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCCh--
Confidence 3467789999999999999999998763 3599999999999998877643 4678999999987652
Q ss_pred ccCCCCCCCCCCCC---eeecCCC
Q psy17365 252 YTDADGNKVPMKFD---RVLCDVP 272 (646)
Q Consensus 252 ~~~~~g~~~~~~FD---~IL~D~P 272 (646)
..|| .|+.+.|
T Consensus 90 ----------~~~d~~~~vvsNlP 103 (253)
T TIGR00755 90 ----------PDFPKQLKVVSNLP 103 (253)
T ss_pred ----------hHcCCcceEEEcCC
Confidence 1345 8888888
No 191
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.65 E-value=0.00069 Score=76.82 Aligned_cols=175 Identities=16% Similarity=0.124 Sum_probs=113.7
Q ss_pred ccEEEecccccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-
Q psy17365 157 GHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP- 235 (646)
Q Consensus 157 G~i~~Qd~~Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~- 235 (646)
|-++---.++-+.+.+|.|++..+|+|-|||+||.-++.++.+.... ....+++.|++.....+.+-|+--.|+.
T Consensus 166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~----~~~~~yGqE~~~~t~~l~~mN~~lhgi~~ 241 (489)
T COG0286 166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQ----DEIFIYGQEINDTTYRLAKMNLILHGIEG 241 (489)
T ss_pred CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhc----cceeEEEEeCCHHHHHHHHHHHHHhCCCc
Confidence 76666556666778888899999999999999999999999885221 1478999999999999999888777776
Q ss_pred CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCC--cchhhhhHHHH-HHHHHHHHHhh
Q psy17365 236 CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWT--PSNGNNLHGIQ-YRIVKRGVEML 312 (646)
Q Consensus 236 ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~--~~~~~~l~~lQ-~~IL~~A~~lL 312 (646)
++.+.++|...-|.. .+......||.|+.+||.|+.|...-.-+.-+.|. ........... ...+.+.+..|
T Consensus 242 ~~~i~~~dtl~~~~~-----~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l 316 (489)
T COG0286 242 DANIRHGDTLSNPKH-----DDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKL 316 (489)
T ss_pred cccccccccccCCcc-----cccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhc
Confidence 345555554332221 00112367999999999997765432101111110 11101111111 45677888999
Q ss_pred ccCCeE--EEEcCCCCccccHHHHHHHHHH
Q psy17365 313 AVGGKI--AYSTCSLNPLEDEAVIQRLIVE 340 (646)
Q Consensus 313 KpGG~L--VYSTCSl~p~ENE~VV~~~L~~ 340 (646)
+|||+. |...-.+...-+|..|...|-+
T Consensus 317 ~~~g~aaivl~~gvlfr~~~e~~IR~~l~~ 346 (489)
T COG0286 317 KPGGRAAIVLPDGVLFRGGAEKDIRKDLLE 346 (489)
T ss_pred CCCceEEEEecCCcCcCCCchHHHHHHHHh
Confidence 997643 3333445555578888888866
No 192
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=97.64 E-value=0.00016 Score=74.94 Aligned_cols=87 Identities=16% Similarity=0.149 Sum_probs=69.9
Q ss_pred ccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcc
Q psy17365 170 PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPN 249 (646)
Q Consensus 170 ~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~ 249 (646)
+..+++++++.||++|+|.|+.|..|++. ...|+|+|+|+..+..|.+... ...|+.++++|+..+..
T Consensus 23 v~~a~~~~~d~VlEIGpG~GaLT~~Ll~~----------~~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~DaLk~d~ 90 (259)
T COG0030 23 VEAANISPGDNVLEIGPGLGALTEPLLER----------AARVTAIEIDRRLAEVLKERFA--PYDNLTVINGDALKFDF 90 (259)
T ss_pred HHhcCCCCCCeEEEECCCCCHHHHHHHhh----------cCeEEEEEeCHHHHHHHHHhcc--cccceEEEeCchhcCcc
Confidence 34567888999999999999999999987 3579999999999999987655 46789999999987642
Q ss_pred ccccCCCCCCCCCCCCeeecCCCCCCCc
Q psy17365 250 VLYTDADGNKVPMKFDRVLCDVPCTGDG 277 (646)
Q Consensus 250 ~~~~~~~g~~~~~~FD~IL~D~PCSG~G 277 (646)
-. ...+++|+.+-|++=+.
T Consensus 91 ~~---------l~~~~~vVaNlPY~Iss 109 (259)
T COG0030 91 PS---------LAQPYKVVANLPYNISS 109 (259)
T ss_pred hh---------hcCCCEEEEcCCCcccH
Confidence 11 01689999999976543
No 193
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.63 E-value=8.5e-05 Score=81.35 Aligned_cols=104 Identities=21% Similarity=0.246 Sum_probs=75.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC--eEEEecCCCCCccccccCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC--AIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n--i~v~~~Da~~~p~~~~~~~ 255 (646)
+-+|||.-||+|--++..+.-+. +...|++||+|+..++.++.|++.+++.. +.+.+.||..+..
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~-------~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~------ 116 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELA-------GVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY------ 116 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-S-------SECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC------
T ss_pred CceEEeccccccHHHHHHHHHcC-------CCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh------
Confidence 45899999999999998887653 35689999999999999999999999886 8889999976532
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
.....||.|=+||= |+ | ...|+.|++.++.||. ++.|||
T Consensus 117 ---~~~~~fD~IDlDPf----GS----p------------------~pfldsA~~~v~~gGl-l~vTaT 155 (377)
T PF02005_consen 117 ---SRQERFDVIDLDPF----GS----P------------------APFLDSALQAVKDGGL-LCVTAT 155 (377)
T ss_dssp ---HSTT-EEEEEE--S----S------------------------HHHHHHHHHHEEEEEE-EEEEE-
T ss_pred ---hccccCCEEEeCCC----CC----c------------------cHhHHHHHHHhhcCCE-EEEecc
Confidence 11367999999973 31 1 1569999999999885 457787
No 194
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=97.60 E-value=0.0006 Score=71.98 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=71.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCA-IITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni-~v~~~Da~~~p~~~~~~ 254 (646)
-.|.+|||+||+.|..+..|+.. +...|+|+|.+..-+....---+-+|.... .....-...+|.
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~---------GA~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgvE~Lp~----- 179 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGR---------GAKSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGVEDLPN----- 179 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhc---------CCCEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcchhhccc-----
Confidence 36889999999999999887765 467899999988754432222223343332 222122223332
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCC
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLN 326 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~ 326 (646)
...||.|+| .|++-+..+- ...|......|++||.||.-|--+.
T Consensus 180 ------~~~FDtVF~------MGVLYHrr~P----------------l~~L~~Lk~~L~~gGeLvLETlvi~ 223 (315)
T PF08003_consen 180 ------LGAFDTVFS------MGVLYHRRSP----------------LDHLKQLKDSLRPGGELVLETLVID 223 (315)
T ss_pred ------cCCcCEEEE------eeehhccCCH----------------HHHHHHHHHhhCCCCEEEEEEeeec
Confidence 257999997 5776443332 2467777888999999998875443
No 195
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.58 E-value=0.0012 Score=69.27 Aligned_cols=131 Identities=15% Similarity=0.117 Sum_probs=92.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCA-IITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni-~v~~~Da~~~p~~~~~~~~ 256 (646)
--+|||+|||+|.--+-+++.... ..-.|.-+|.++.-++.-++.++..|+.++ .++++||.....+..
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~------~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~---- 205 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPE------RPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAA---- 205 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCC------CCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhc----
Confidence 348999999999876655554321 124789999999999999999999999987 899999976433221
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHH
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQR 336 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~ 336 (646)
-....+.+++ +|.+.--||- .+-...|......+.|||+|||+.=-.||.-. .|+.
T Consensus 206 ---l~p~P~l~iV------sGL~ElF~Dn-------------~lv~~sl~gl~~al~pgG~lIyTgQPwHPQle--~IAr 261 (311)
T PF12147_consen 206 ---LDPAPTLAIV------SGLYELFPDN-------------DLVRRSLAGLARALEPGGYLIYTGQPWHPQLE--MIAR 261 (311)
T ss_pred ---cCCCCCEEEE------ecchhhCCcH-------------HHHHHHHHHHHHHhCCCcEEEEcCCCCCcchH--HHHH
Confidence 0124577765 2433322321 12234577778889999999998777888543 7899
Q ss_pred HHHHcc
Q psy17365 337 LIVETQ 342 (646)
Q Consensus 337 ~L~~~~ 342 (646)
+|..|.
T Consensus 262 ~LtsHr 267 (311)
T PF12147_consen 262 VLTSHR 267 (311)
T ss_pred HHhccc
Confidence 998874
No 196
>KOG2899|consensus
Probab=97.57 E-value=0.00038 Score=70.89 Aligned_cols=47 Identities=15% Similarity=0.115 Sum_probs=41.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR 231 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~r 231 (646)
.+-.+||++|-.|-.|++||..++ .-.|+++|||+.+++.++.++..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~--------~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFG--------PRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhc--------cceeeEeeccHHHHHHHHHhccc
Confidence 355799999999999999999874 55799999999999999988754
No 197
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=97.56 E-value=0.00034 Score=75.40 Aligned_cols=115 Identities=18% Similarity=0.159 Sum_probs=69.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC----------CCeEEEecCCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS----------PCAIITNHDASV 246 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~----------~ni~v~~~Da~~ 246 (646)
++.+|||||||-||=..=.... +.+.++++|++...++.++++.+.+.- -...++.+|...
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~---------~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~ 132 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA---------KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFS 132 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT---------T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCC
T ss_pred CCCeEEEecCCCchhHHHHHhc---------CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheecccccc
Confidence 8899999999999955433322 467999999999999999888743321 123456666543
Q ss_pred CccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 247 MPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 247 ~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
-. +.....+ ....||+|=|= ........-...-+.+|.++...|+|||+++-+|
T Consensus 133 ~~-l~~~~~~---~~~~FDvVScQ------------------FalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~ 186 (331)
T PF03291_consen 133 ES-LREKLPP---RSRKFDVVSCQ------------------FALHYAFESEEKARQFLKNVSSLLKPGGYFIGTT 186 (331)
T ss_dssp SH-HHCTSSS---TTS-EEEEEEE------------------S-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ch-hhhhccc---cCCCcceeehH------------------HHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence 21 1000000 12478888662 2222333333334569999999999999999775
No 198
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.55 E-value=0.00037 Score=71.32 Aligned_cols=130 Identities=21% Similarity=0.275 Sum_probs=76.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCC-ccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVM-PNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~-p~~~~~~~ 255 (646)
.|.+|| |-|=+-.|+..+.+.+ ....|+.+|+|..-++.+.+.+++.|++ |....+|.+.. |...
T Consensus 44 ~gk~il--~lGDDDLtSlA~al~~-------~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~~~~~DlR~~LP~~~---- 109 (243)
T PF01861_consen 44 EGKRIL--FLGDDDLTSLALALTG-------LPKRITVVDIDERLLDFINRVAEEEGLP-IEAVHYDLRDPLPEEL---- 109 (243)
T ss_dssp TT-EEE--EES-TT-HHHHHHHHT---------SEEEEE-S-HHHHHHHHHHHHHHT---EEEE---TTS---TTT----
T ss_pred cCCEEE--EEcCCcHHHHHHHhhC-------CCCeEEEEEcCHHHHHHHHHHHHHcCCc-eEEEEecccccCCHHH----
Confidence 366776 4456666655554443 3568999999999999999999999998 99999998763 3211
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcc-ccH-HH
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPL-EDE-AV 333 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~-ENE-~V 333 (646)
.++||.++.|||.+-.|+ .-.|.||++.||.-|..+|-..|..+. -.+ ..
T Consensus 110 -----~~~fD~f~TDPPyT~~G~-----------------------~LFlsRgi~~Lk~~g~~gy~~~~~~~~s~~~~~~ 161 (243)
T PF01861_consen 110 -----RGKFDVFFTDPPYTPEGL-----------------------KLFLSRGIEALKGEGCAGYFGFTHKEASPDKWLE 161 (243)
T ss_dssp -----SS-BSEEEE---SSHHHH-----------------------HHHHHHHHHTB-STT-EEEEEE-TTT--HHHHHH
T ss_pred -----hcCCCEEEeCCCCCHHHH-----------------------HHHHHHHHHHhCCCCceEEEEEecCcCcHHHHHH
Confidence 368999999999877774 246899999999888566665665441 122 36
Q ss_pred HHHHHHHccCcEEEeec
Q psy17365 334 IQRLIVETQGAVQLVDV 350 (646)
Q Consensus 334 V~~~L~~~~~~~elv~~ 350 (646)
|+++|.+.+ +-+.++
T Consensus 162 ~Q~~l~~~g--l~i~di 176 (243)
T PF01861_consen 162 VQRFLLEMG--LVITDI 176 (243)
T ss_dssp HHHHHHTS----EEEEE
T ss_pred HHHHHHHCC--cCHHHH
Confidence 788887665 444444
No 199
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=97.55 E-value=0.00018 Score=80.51 Aligned_cols=126 Identities=17% Similarity=0.192 Sum_probs=85.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
+-.|||+|||.|-.+...+.+.... + .+..|+|+|.++..+..+++.+++.+. ..|.++++|++.+..
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~-~---~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l------- 255 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARA-G---GAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL------- 255 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHH-C---CESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH-------
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHh-C---CCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC-------
Confidence 5679999999999987666553211 1 356999999999999888888888887 569999999987632
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC--CCccccHHHH
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS--LNPLEDEAVI 334 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS--l~p~ENE~VV 334 (646)
+.++|+|+...= |.+--+ .+--+.|..+-++|||||+++=+.++ +.|.+.+..-
T Consensus 256 ----pekvDIIVSElL----Gsfg~n----------------El~pE~Lda~~rfLkp~Gi~IP~~~t~ylaPiss~~l~ 311 (448)
T PF05185_consen 256 ----PEKVDIIVSELL----GSFGDN----------------ELSPECLDAADRFLKPDGIMIPSSYTSYLAPISSPKLY 311 (448)
T ss_dssp ----SS-EEEEEE-------BTTBTT----------------TSHHHHHHHGGGGEEEEEEEESSEEEEEEEEEE-HHHH
T ss_pred ----CCceeEEEEecc----CCcccc----------------ccCHHHHHHHHhhcCCCCEEeCcchhhEEEEeeCHHHH
Confidence 358999997532 322111 11235688888999999999844444 7888888766
Q ss_pred HHHH
Q psy17365 335 QRLI 338 (646)
Q Consensus 335 ~~~L 338 (646)
.+..
T Consensus 312 ~~~~ 315 (448)
T PF05185_consen 312 QEVR 315 (448)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 200
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.46 E-value=0.00029 Score=72.88 Aligned_cols=134 Identities=16% Similarity=0.227 Sum_probs=88.1
Q ss_pred ccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEecCCC
Q psy17365 170 PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN----SPCAIITNHDAS 245 (646)
Q Consensus 170 ~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg----~~ni~v~~~Da~ 245 (646)
+.++.+ ...+||=+|.|-|+.+.+++..- +-..|+++|+|+.-++.+++-..... -+++.++..|+.
T Consensus 70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~~--------~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~ 140 (246)
T PF01564_consen 70 PLLLHP-NPKRVLIIGGGDGGTARELLKHP--------PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGR 140 (246)
T ss_dssp HHHHSS-ST-EEEEEESTTSHHHHHHTTST--------T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHH
T ss_pred HhhcCC-CcCceEEEcCCChhhhhhhhhcC--------CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhH
Confidence 344444 45689999999999888775431 24689999999999999888765532 368999999998
Q ss_pred CCccccccCCCCCCCCC-CCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 246 VMPNVLYTDADGNKVPM-KFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 246 ~~p~~~~~~~~g~~~~~-~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
.+.... .. +||+|++|++= ..|.. .. -.-.+.++.+.+.|++||.++.-.
T Consensus 141 ~~l~~~---------~~~~yDvIi~D~~d-p~~~~------------~~-----l~t~ef~~~~~~~L~~~Gv~v~~~-- 191 (246)
T PF01564_consen 141 KFLKET---------QEEKYDVIIVDLTD-PDGPA------------PN-----LFTREFYQLCKRRLKPDGVLVLQA-- 191 (246)
T ss_dssp HHHHTS---------SST-EEEEEEESSS-TTSCG------------GG-----GSSHHHHHHHHHHEEEEEEEEEEE--
T ss_pred HHHHhc---------cCCcccEEEEeCCC-CCCCc------------cc-----ccCHHHHHHHHhhcCCCcEEEEEc--
Confidence 765421 13 79999999872 22210 00 112367888899999999998654
Q ss_pred CCccccHHHHHHHHHHc
Q psy17365 325 LNPLEDEAVIQRLIVET 341 (646)
Q Consensus 325 l~p~ENE~VV~~~L~~~ 341 (646)
-++..++..+..+.+..
T Consensus 192 ~~~~~~~~~~~~i~~tl 208 (246)
T PF01564_consen 192 GSPFLHPELFKSILKTL 208 (246)
T ss_dssp EETTTTHHHHHHHHHHH
T ss_pred cCcccchHHHHHHHHHH
Confidence 23334555665555443
No 201
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.44 E-value=0.0012 Score=71.70 Aligned_cols=128 Identities=13% Similarity=0.129 Sum_probs=92.7
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCC---C------------------------CCCCc----EEEEEcCCH
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADS---N------------------------PVPSG----LVVANDVDN 219 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~---~------------------------~~~~G----~VvA~Dis~ 219 (646)
.+.+.+++..++|--||+|...+.+|.+...... . ....+ .+++.|+|+
T Consensus 185 ~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~ 264 (381)
T COG0116 185 LLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDP 264 (381)
T ss_pred HHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCH
Confidence 3456788889999999999998887765321000 0 00001 578999999
Q ss_pred HHHHHHHHHHHHcCCCC-eEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhH
Q psy17365 220 NRCYMLVHQAKRLNSPC-AIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLH 298 (646)
Q Consensus 220 ~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~ 298 (646)
+.++.++.|+.+.|+.. |.+...|++.+... ...+|+|+|+||+- .- ...-....
T Consensus 265 r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~----------~~~~gvvI~NPPYG-eR-------------lg~~~~v~ 320 (381)
T COG0116 265 RHIEGAKANARAAGVGDLIEFKQADATDLKEP----------LEEYGVVISNPPYG-ER-------------LGSEALVA 320 (381)
T ss_pred HHHHHHHHHHHhcCCCceEEEEEcchhhCCCC----------CCcCCEEEeCCCcc-hh-------------cCChhhHH
Confidence 99999999999999865 78899999887542 14799999999942 11 11113344
Q ss_pred HHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 299 GIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 299 ~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
.+...+...+.+.++--++.|+||
T Consensus 321 ~LY~~fg~~lk~~~~~ws~~v~tt 344 (381)
T COG0116 321 KLYREFGRTLKRLLAGWSRYVFTT 344 (381)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEc
Confidence 577788888889999888898886
No 202
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=97.42 E-value=0.0015 Score=77.31 Aligned_cols=124 Identities=15% Similarity=0.092 Sum_probs=82.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcC-C--C-------------------------------CCCCcEEEEEcCCHHH
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAAD-S--N-------------------------------PVPSGLVVANDVDNNR 221 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~-~--~-------------------------------~~~~G~VvA~Dis~~R 221 (646)
+++..++|-+||+|...+.+|.+..... + . ......|+|+|+++..
T Consensus 189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a 268 (702)
T PRK11783 189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV 268 (702)
T ss_pred CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence 5789999999999999888776532100 0 0 0012479999999999
Q ss_pred HHHHHHHHHHcCCCC-eEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHH
Q psy17365 222 CYMLVHQAKRLNSPC-AIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGI 300 (646)
Q Consensus 222 l~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~l 300 (646)
+..+++|+++.|+.+ +.+.++|+..++... ....||.|++|||.-.. + .....+..+
T Consensus 269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~--------~~~~~d~IvtNPPYg~r------------~--~~~~~l~~l 326 (702)
T PRK11783 269 IQAARKNARRAGVAELITFEVKDVADLKNPL--------PKGPTGLVISNPPYGER------------L--GEEPALIAL 326 (702)
T ss_pred HHHHHHHHHHcCCCcceEEEeCChhhccccc--------ccCCCCEEEECCCCcCc------------c--CchHHHHHH
Confidence 999999999999865 788899998764311 11469999999995320 0 011233444
Q ss_pred HHHHHHHHHHhhccCCeEEEEc
Q psy17365 301 QYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 301 Q~~IL~~A~~lLKpGG~LVYST 322 (646)
..++ -..++...+|++++.-|
T Consensus 327 Y~~l-g~~lk~~~~g~~~~llt 347 (702)
T PRK11783 327 YSQL-GRRLKQQFGGWNAALFS 347 (702)
T ss_pred HHHH-HHHHHHhCCCCeEEEEe
Confidence 4443 34455555888775443
No 203
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.41 E-value=0.00035 Score=74.29 Aligned_cols=91 Identities=14% Similarity=0.175 Sum_probs=71.2
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
+|.++||..++|+..|-||.|..|++.+. .|.|+|+|.|+..++.++++++..+ .++.+++.+...+....
T Consensus 15 ~L~~~~ggiyVD~TlG~GGHS~~iL~~l~--------~g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l 85 (305)
T TIGR00006 15 GLNIKPDGIYIDCTLGFGGHSKAILEQLG--------TGRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHL 85 (305)
T ss_pred hcCcCCCCEEEEeCCCChHHHHHHHHhCC--------CCEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHH
Confidence 46678999999999999999999998763 5999999999999999988877653 46888888887765432
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGD 276 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~ 276 (646)
. ..+ ...+|.||+|-=+|..
T Consensus 86 ~--~~~---~~~vDgIl~DLGvSS~ 105 (305)
T TIGR00006 86 D--ELL---VTKIDGILVDLGVSSP 105 (305)
T ss_pred H--hcC---CCcccEEEEeccCCHh
Confidence 1 001 2469999999766653
No 204
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=97.39 E-value=0.0004 Score=74.52 Aligned_cols=74 Identities=19% Similarity=0.207 Sum_probs=53.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
+.+|..|||+||+|||+|-++++. .+.|+|+|..+-. ..+ +..++|.....|+..+..
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~r----------G~~V~AVD~g~l~-----~~L--~~~~~V~h~~~d~fr~~p----- 266 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRR----------GMFVTAVDNGPMA-----QSL--MDTGQVEHLRADGFKFRP----- 266 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHc----------CCEEEEEechhcC-----Hhh--hCCCCEEEEeccCcccCC-----
Confidence 468999999999999999999875 3499999955421 111 345678888888765421
Q ss_pred CCCCCCCCCCCeeecCCCCCC
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTG 275 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG 275 (646)
....+|.|+||+-|..
T Consensus 267 -----~~~~vDwvVcDmve~P 282 (357)
T PRK11760 267 -----PRKNVDWLVCDMVEKP 282 (357)
T ss_pred -----CCCCCCEEEEecccCH
Confidence 0257999999986543
No 205
>KOG4300|consensus
Probab=97.39 E-value=0.00051 Score=68.52 Aligned_cols=118 Identities=16% Similarity=0.220 Sum_probs=84.1
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeE-EEecCCCCCccccccCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAI-ITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~-v~~~Da~~~p~~~~~~~~g 257 (646)
-.||.++||||.---..- + .+--.|+++|.+++.-+.+...++.....++. ++.+++.++|.+.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~------~---~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~------ 142 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYP------W---KPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLA------ 142 (252)
T ss_pred cceEEecccCCCCccccc------C---CCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccc------
Confidence 358999999996422110 1 14568999999999999999888877666776 8899999988643
Q ss_pred CCCCCCCCeeecC-CCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHH
Q psy17365 258 NKVPMKFDRVLCD-VPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQR 336 (646)
Q Consensus 258 ~~~~~~FD~IL~D-~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~ 336 (646)
..++|.|+|- +-||-. -+.+.|.+.-++|+|||++++-- +-.+.-.-...
T Consensus 143 ---d~s~DtVV~TlvLCSve-----------------------~~~k~L~e~~rlLRpgG~iifiE---Hva~~y~~~n~ 193 (252)
T KOG4300|consen 143 ---DGSYDTVVCTLVLCSVE-----------------------DPVKQLNEVRRLLRPGGRIIFIE---HVAGEYGFWNR 193 (252)
T ss_pred ---cCCeeeEEEEEEEeccC-----------------------CHHHHHHHHHHhcCCCcEEEEEe---cccccchHHHH
Confidence 2579999874 345533 24578999999999999999753 33333344555
Q ss_pred HHHH
Q psy17365 337 LIVE 340 (646)
Q Consensus 337 ~L~~ 340 (646)
+++.
T Consensus 194 i~q~ 197 (252)
T KOG4300|consen 194 ILQQ 197 (252)
T ss_pred HHHH
Confidence 5544
No 206
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=97.38 E-value=0.00099 Score=66.09 Aligned_cols=71 Identities=15% Similarity=0.116 Sum_probs=51.2
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
++||.+|||+|||.|..-.+|.+. ..-..+++|+++..+....++ | +.|+++|+..-...
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~---------k~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL~~---- 70 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDE---------KQVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGLAD---- 70 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHh---------cCCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhHhh----
Confidence 578999999999999877776654 245789999999986555432 4 45888887653211
Q ss_pred CCCCCCCCCCCeeec
Q psy17365 255 ADGNKVPMKFDRVLC 269 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~ 269 (646)
.....||.|++
T Consensus 71 ----f~d~sFD~VIl 81 (193)
T PF07021_consen 71 ----FPDQSFDYVIL 81 (193)
T ss_pred ----CCCCCccEEeh
Confidence 12367999997
No 207
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.36 E-value=0.00066 Score=68.72 Aligned_cols=97 Identities=19% Similarity=0.175 Sum_probs=77.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+|+|+|||+|-=..-+|=. . +...|+-+|...+|+.-|+.-.+.+|.+|+.++++.+..+...
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~-~-------p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~------- 132 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIA-F-------PDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQE------- 132 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHh-c-------cCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccc-------
Confidence 679999999999877777732 2 5677999999999999999999999999999999999887531
Q ss_pred CCCCCC-CCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE
Q psy17365 258 NKVPMK-FDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319 (646)
Q Consensus 258 ~~~~~~-FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV 319 (646)
.. ||.|.+=|=++- ..++.-+..++|+||.++
T Consensus 133 ----~~~~D~vtsRAva~L--------------------------~~l~e~~~pllk~~g~~~ 165 (215)
T COG0357 133 ----KKQYDVVTSRAVASL--------------------------NVLLELCLPLLKVGGGFL 165 (215)
T ss_pred ----cccCcEEEeehccch--------------------------HHHHHHHHHhcccCCcch
Confidence 12 999987443221 146777899999988865
No 208
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=97.24 E-value=0.0012 Score=63.86 Aligned_cols=115 Identities=21% Similarity=0.205 Sum_probs=84.1
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
.+++.|--||+++.|+|-.|-.|++... ....++|+|.|++-...|.+. .+.+.++++||..+...
T Consensus 44 I~pesglpVlElGPGTGV~TkaIL~~gv-------~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~~l~~~-- 109 (194)
T COG3963 44 IDPESGLPVLELGPGTGVITKAILSRGV-------RPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAFDLRTT-- 109 (194)
T ss_pred cCcccCCeeEEEcCCccHhHHHHHhcCC-------CccceEEEEeCHHHHHHHHHh-----CCCccccccchhhHHHH--
Confidence 5778888999999999999999988754 456799999999988777553 45566899999765311
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
-|......||.|++-.| +..-|- ..-.+||+.++..|.+||.+|--|-+
T Consensus 110 ---l~e~~gq~~D~viS~lP------ll~~P~--------------~~~iaile~~~~rl~~gg~lvqftYg 158 (194)
T COG3963 110 ---LGEHKGQFFDSVISGLP------LLNFPM--------------HRRIAILESLLYRLPAGGPLVQFTYG 158 (194)
T ss_pred ---HhhcCCCeeeeEEeccc------cccCcH--------------HHHHHHHHHHHHhcCCCCeEEEEEec
Confidence 11122357999999888 222221 12247999999999999999855444
No 209
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.17 E-value=0.00065 Score=69.54 Aligned_cols=40 Identities=23% Similarity=0.175 Sum_probs=33.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHH
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYM 224 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~ 224 (646)
.+|..|||++||||+.|..+++. +.+.|+|+|+++..+..
T Consensus 74 ~~~~~vlDiG~gtG~~t~~l~~~---------ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 74 VKNKIVLDVGSSTGGFTDCALQK---------GAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCCEEEEcccCCCHHHHHHHHc---------CCCEEEEEeCCHHHHHH
Confidence 36789999999999999999875 46799999999976543
No 210
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.16 E-value=0.0014 Score=67.71 Aligned_cols=94 Identities=16% Similarity=0.267 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
...++||+|||-|+.|..++.... .|+|.|+|+.+...|. +-|.. ++..| .+..
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~----------~v~aTE~S~~Mr~rL~----~kg~~---vl~~~--~w~~------- 147 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFK----------EVYATEASPPMRWRLS----KKGFT---VLDID--DWQQ------- 147 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcc----------eEEeecCCHHHHHHHH----hCCCe---EEehh--hhhc-------
Confidence 356899999999999999988753 6999999998755443 34543 33222 2211
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
...+||+|-|= -++.|. ..-..+|+.+.+.|+|+|+||.+
T Consensus 148 ---~~~~fDvIscL------NvLDRc----------------~~P~~LL~~i~~~l~p~G~lilA 187 (265)
T PF05219_consen 148 ---TDFKFDVISCL------NVLDRC----------------DRPLTLLRDIRRALKPNGRLILA 187 (265)
T ss_pred ---cCCceEEEeeh------hhhhcc----------------CCHHHHHHHHHHHhCCCCEEEEE
Confidence 12479999761 222221 11246899999999999999965
No 211
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.15 E-value=0.001 Score=71.66 Aligned_cols=120 Identities=19% Similarity=0.222 Sum_probs=88.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
.-+|||.-||+|--.+-+|--.. .-.|++||++++.+++++.|++++...+..+++.||..+...
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~--------~~~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~------- 117 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETG--------VVKVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE------- 117 (380)
T ss_pred CeEEeecccccchhHhhhhhhcC--------ccEEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh-------
Confidence 66899999999998888775532 338999999999999999999999666778888888765321
Q ss_pred CCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC-CCccccHHHHHH
Q psy17365 258 NKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS-LNPLEDEAVIQR 336 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS-l~p~ENE~VV~~ 336 (646)
....||.|=+||= |+ |- -.++.|++.++.||.|.. ||| ..+...- .-..
T Consensus 118 --~~~~fd~IDiDPF----GS----Pa------------------PFlDaA~~s~~~~G~l~v-TATD~a~L~G~-~p~~ 167 (380)
T COG1867 118 --LHRAFDVIDIDPF----GS----PA------------------PFLDAALRSVRRGGLLCV-TATDTAPLCGS-YPRK 167 (380)
T ss_pred --cCCCccEEecCCC----CC----Cc------------------hHHHHHHHHhhcCCEEEE-EecccccccCC-ChHH
Confidence 1257999999974 32 11 468999999999998874 566 4333332 3445
Q ss_pred HHHHcc
Q psy17365 337 LIVETQ 342 (646)
Q Consensus 337 ~L~~~~ 342 (646)
.+++|.
T Consensus 168 c~rkY~ 173 (380)
T COG1867 168 CRRKYG 173 (380)
T ss_pred HHHHhc
Confidence 566664
No 212
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=97.15 E-value=0.0018 Score=68.33 Aligned_cols=120 Identities=16% Similarity=0.180 Sum_probs=84.9
Q ss_pred cccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC----CCCeEEEecCC
Q psy17365 169 PPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN----SPCAIITNHDA 244 (646)
Q Consensus 169 ~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg----~~ni~v~~~Da 244 (646)
++.+..++| .+||=++-|.|+.+-.++... +--.++++|+|++-+++.++-+.... -+.+.++..|+
T Consensus 69 ~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~--------~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg 139 (282)
T COG0421 69 VPLLAHPNP-KRVLIIGGGDGGTLREVLKHL--------PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDG 139 (282)
T ss_pred chhhhCCCC-CeEEEECCCccHHHHHHHhcC--------CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccH
Confidence 344556677 599999999999988887653 35689999999999998887765443 35678888888
Q ss_pred CCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 245 SVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 245 ~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
..+.... ..+||+|++|.- ++. ...+.+ ......+.+.+.|+++|.+|.=+=|
T Consensus 140 ~~~v~~~---------~~~fDvIi~D~t---dp~-gp~~~L--------------ft~eFy~~~~~~L~~~Gi~v~q~~~ 192 (282)
T COG0421 140 VEFLRDC---------EEKFDVIIVDST---DPV-GPAEAL--------------FTEEFYEGCRRALKEDGIFVAQAGS 192 (282)
T ss_pred HHHHHhC---------CCcCCEEEEcCC---CCC-Cccccc--------------CCHHHHHHHHHhcCCCcEEEEecCC
Confidence 7764321 247999999953 221 111111 2246788889999999999876433
No 213
>KOG2730|consensus
Probab=97.15 E-value=0.00027 Score=70.96 Aligned_cols=89 Identities=21% Similarity=0.235 Sum_probs=67.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~~~ 255 (646)
.-+.|+|..+|-||-|+|-|.. .-.|+|+|+|+-++++++||++-.|+++ |.++++|....-....
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~----------~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq--- 160 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQ----------GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLK--- 160 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHh----------CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHh---
Confidence 3457899999999999988754 3478999999999999999999999986 7889999755322110
Q ss_pred CCCCCCCCCCeeecCCCCCCCccccc
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRK 281 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk 281 (646)
.....+|.|..-+|=+|.|-.+.
T Consensus 161 ---~~K~~~~~vf~sppwggp~y~~~ 183 (263)
T KOG2730|consen 161 ---ADKIKYDCVFLSPPWGGPSYLRA 183 (263)
T ss_pred ---hhhheeeeeecCCCCCCcchhhh
Confidence 01124778888899888886554
No 214
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.14 E-value=0.0019 Score=63.98 Aligned_cols=71 Identities=15% Similarity=0.135 Sum_probs=49.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCC-CccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASV-MPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~-~p~~~~~~ 254 (646)
.++.+|||+|||+|..+..+++.. ...++++|+++..+..+.. .++.++..|+.. ++..
T Consensus 12 ~~~~~iLDiGcG~G~~~~~l~~~~---------~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~~l~~~---- 71 (194)
T TIGR02081 12 PPGSRVLDLGCGDGELLALLRDEK---------QVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDEGLEAF---- 71 (194)
T ss_pred CCCCEEEEeCCCCCHHHHHHHhcc---------CCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhhccccc----
Confidence 467899999999999888776542 3357999999987766543 235667777654 2111
Q ss_pred CCCCCCCCCCCeeecCC
Q psy17365 255 ADGNKVPMKFDRVLCDV 271 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~ 271 (646)
....||.|++..
T Consensus 72 -----~~~sfD~Vi~~~ 83 (194)
T TIGR02081 72 -----PDKSFDYVILSQ 83 (194)
T ss_pred -----CCCCcCEEEEhh
Confidence 125799999853
No 215
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=97.11 E-value=0.00097 Score=70.06 Aligned_cols=79 Identities=16% Similarity=0.176 Sum_probs=58.8
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
+|+|+|||.||.+..+.++ +--.|+|+|+++..++.+++|.. +. +.+.|...+....
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~---------G~~~v~a~e~~~~a~~~~~~N~~-----~~-~~~~Di~~~~~~~-------- 58 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKA---------GFEIVAANEIDKSAAETYEANFP-----NK-LIEGDITKIDEKD-------- 58 (275)
T ss_pred cEEEEccCcchHHHHHHHc---------CCEEEEEEeCCHHHHHHHHHhCC-----CC-CccCccccCchhh--------
Confidence 6999999999998877543 24478999999999999988753 21 5567776653211
Q ss_pred CCCCCCeeecCCCCCCCccccc
Q psy17365 260 VPMKFDRVLCDVPCTGDGTMRK 281 (646)
Q Consensus 260 ~~~~FD~IL~D~PCSG~G~lrk 281 (646)
....+|.|+.++||.+.-...+
T Consensus 59 ~~~~~D~l~~gpPCq~fS~ag~ 80 (275)
T cd00315 59 FIPDIDLLTGGFPCQPFSIAGK 80 (275)
T ss_pred cCCCCCEEEeCCCChhhhHHhh
Confidence 0246999999999998876554
No 216
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=97.06 E-value=0.0037 Score=63.92 Aligned_cols=115 Identities=14% Similarity=0.161 Sum_probs=80.8
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
..+..+..+|||+|.|.|..+..++... |.-+++..|. +.-++.+.. ..+|.++.+|...-
T Consensus 95 ~~d~~~~~~vvDvGGG~G~~~~~l~~~~--------P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~---- 155 (241)
T PF00891_consen 95 AFDFSGFKTVVDVGGGSGHFAIALARAY--------PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP---- 155 (241)
T ss_dssp HSTTTTSSEEEEET-TTSHHHHHHHHHS--------TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC----
T ss_pred cccccCccEEEeccCcchHHHHHHHHHC--------CCCcceeecc-Hhhhhcccc------ccccccccccHHhh----
Confidence 3466677799999999999999998874 5668888997 555554444 67899999998521
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccC--CeEEEEcCCCCccc
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVG--GKIAYSTCSLNPLE 329 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpG--G~LVYSTCSl~p~E 329 (646)
.+. +|.|++ ..++..|+.++. ..||+++...|+|| |+|+....-+....
T Consensus 156 --------~P~-~D~~~l-------------~~vLh~~~d~~~-------~~iL~~~~~al~pg~~g~llI~e~~~~~~~ 206 (241)
T PF00891_consen 156 --------LPV-ADVYLL-------------RHVLHDWSDEDC-------VKILRNAAAALKPGKDGRLLIIEMVLPDDR 206 (241)
T ss_dssp --------CSS-ESEEEE-------------ESSGGGS-HHHH-------HHHHHHHHHHSEECTTEEEEEEEEEECSSS
T ss_pred --------hcc-ccceee-------------ehhhhhcchHHH-------HHHHHHHHHHhCCCCCCeEEEEeeccCCCC
Confidence 123 898886 235556766554 47999999999999 99998876655555
Q ss_pred cHHHH
Q psy17365 330 DEAVI 334 (646)
Q Consensus 330 NE~VV 334 (646)
.+...
T Consensus 207 ~~~~~ 211 (241)
T PF00891_consen 207 TGPPS 211 (241)
T ss_dssp SSHHH
T ss_pred CCchH
Confidence 54433
No 217
>KOG3191|consensus
Probab=97.04 E-value=0.0098 Score=58.47 Aligned_cols=146 Identities=14% Similarity=0.190 Sum_probs=95.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
-..+|+++||+|-.|+.+++.+. +....+|.|+++..++...+-++.++.. +.++..|...-
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~-------~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~---------- 105 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIG-------PQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSG---------- 105 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcC-------CCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhh----------
Confidence 34699999999999999999875 6778999999999999988888777665 66677675321
Q ss_pred CCCCCCCCeeecCCCCCCCccccc-CccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHH
Q psy17365 258 NKVPMKFDRVLCDVPCTGDGTMRK-NPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQR 336 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCSG~G~lrk-~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~ 336 (646)
-..++.|+++.+||+--+----. ...+-..|. .+..-...--++|...-.+|.|.|.+-..+|.-|. ..-|-.
T Consensus 106 -l~~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~a--GG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~---p~ei~k 179 (209)
T KOG3191|consen 106 -LRNESVDVLVFNPPYVPTSDEEIGDEGIASAWA--GGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK---PKEILK 179 (209)
T ss_pred -hccCCccEEEECCCcCcCCcccchhHHHHHHHh--cCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC---HHHHHH
Confidence 11268999999999654321000 011111232 11112222336777777899999987777766543 333444
Q ss_pred HHHHccCcEEE
Q psy17365 337 LIVETQGAVQL 347 (646)
Q Consensus 337 ~L~~~~~~~el 347 (646)
+++..+....+
T Consensus 180 ~l~~~g~~~~~ 190 (209)
T KOG3191|consen 180 ILEKKGYGVRI 190 (209)
T ss_pred HHhhcccceeE
Confidence 77776543333
No 218
>KOG1541|consensus
Probab=97.02 E-value=0.0031 Score=63.57 Aligned_cols=143 Identities=17% Similarity=0.196 Sum_probs=90.3
Q ss_pred ccccEEEecccccccccccCCCC--CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc
Q psy17365 155 ATGHISRQEAVSMIPPLLLDVQT--HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL 232 (646)
Q Consensus 155 ~~G~i~~Qd~~Sml~~~~Ld~~p--g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl 232 (646)
++-.+.+|-+-+.-...+|++.+ ...|||++||+|--+..|.+ ..-..+++|+|+..++.+.+. .+
T Consensus 26 nsri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~----------~Gh~wiGvDiSpsML~~a~~~--e~ 93 (270)
T KOG1541|consen 26 NSRIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSD----------SGHQWIGVDISPSMLEQAVER--EL 93 (270)
T ss_pred cceeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheecc----------CCceEEeecCCHHHHHHHHHh--hh
Confidence 44556788887777777887766 56899999999976654432 234689999999999988862 22
Q ss_pred CCCCeEEEecCCCC-CccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHH---HHHHHH
Q psy17365 233 NSPCAIITNHDASV-MPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQY---RIVKRG 308 (646)
Q Consensus 233 g~~ni~v~~~Da~~-~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~---~IL~~A 308 (646)
.- -++.+|.-. +| ..++.||-||.=. .+ .|--..-..++.-+. ......
T Consensus 94 eg---dlil~DMG~Glp----------frpGtFDg~ISIS------------Av--QWLcnA~~s~~~P~~Rl~~FF~tL 146 (270)
T KOG1541|consen 94 EG---DLILCDMGEGLP----------FRPGTFDGVISIS------------AV--QWLCNADKSLHVPKKRLLRFFGTL 146 (270)
T ss_pred hc---CeeeeecCCCCC----------CCCCccceEEEee------------ee--eeecccCccccChHHHHHHHhhhh
Confidence 21 133344332 22 2346899877410 01 332222222232333 344557
Q ss_pred HHhhccCCeEEEEcCCCCccccHHHHHHHHHH
Q psy17365 309 VEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVE 340 (646)
Q Consensus 309 ~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~ 340 (646)
+..|+.|++-|+= .-.||++.++-++..
T Consensus 147 y~~l~rg~raV~Q----fYpen~~q~d~i~~~ 174 (270)
T KOG1541|consen 147 YSCLKRGARAVLQ----FYPENEAQIDMIMQQ 174 (270)
T ss_pred hhhhccCceeEEE----ecccchHHHHHHHHH
Confidence 7889999999864 445899998888765
No 219
>KOG0820|consensus
Probab=97.01 E-value=0.0025 Score=66.04 Aligned_cols=80 Identities=19% Similarity=0.234 Sum_probs=64.9
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNV 250 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~ 250 (646)
-.+++|+|.||+++-|||+.|..|++. ...|+|+|+|+..+..|.+..+-... ....|+.+|....+
T Consensus 53 ka~~k~tD~VLEvGPGTGnLT~~lLe~----------~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d-- 120 (315)
T KOG0820|consen 53 KADLKPTDVVLEVGPGTGNLTVKLLEA----------GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD-- 120 (315)
T ss_pred ccCCCCCCEEEEeCCCCCHHHHHHHHh----------cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC--
Confidence 357899999999999999999999987 45899999999999988887764432 24788899976532
Q ss_pred cccCCCCCCCCCCCCeeecCCCC
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPC 273 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PC 273 (646)
...||.++.+.|.
T Consensus 121 ----------~P~fd~cVsNlPy 133 (315)
T KOG0820|consen 121 ----------LPRFDGCVSNLPY 133 (315)
T ss_pred ----------CcccceeeccCCc
Confidence 2479999999885
No 220
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=96.98 E-value=0.0032 Score=64.42 Aligned_cols=113 Identities=12% Similarity=0.017 Sum_probs=74.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHH------------HHcCCCCeEEEec
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQA------------KRLNSPCAIITNH 242 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~------------~rlg~~ni~v~~~ 242 (646)
+.++.+||+.+||.|--...||+. .-.|+|+|+|+..++.+.+.. ++....+|.+.++
T Consensus 41 ~~~~~rvLvPgCGkg~D~~~LA~~----------G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~g 110 (226)
T PRK13256 41 INDSSVCLIPMCGCSIDMLFFLSK----------GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVA 110 (226)
T ss_pred CCCCCeEEEeCCCChHHHHHHHhC----------CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEc
Confidence 346789999999999999999875 236999999999998875521 1122346888999
Q ss_pred CCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 243 DASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 243 Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
|...++... .....||.|.- |...-.+ .|+. -.+...+..++|+|||+++.-|
T Consensus 111 D~f~l~~~~-------~~~~~fD~VyD---ra~~~Al--pp~~---------------R~~Y~~~l~~lL~pgg~llll~ 163 (226)
T PRK13256 111 DIFNLPKIA-------NNLPVFDIWYD---RGAYIAL--PNDL---------------RTNYAKMMLEVCSNNTQILLLV 163 (226)
T ss_pred cCcCCCccc-------cccCCcCeeee---ehhHhcC--CHHH---------------HHHHHHHHHHHhCCCcEEEEEE
Confidence 987764210 01246887652 1111111 2332 2356778889999999998765
Q ss_pred CC
Q psy17365 323 CS 324 (646)
Q Consensus 323 CS 324 (646)
-.
T Consensus 164 ~~ 165 (226)
T PRK13256 164 ME 165 (226)
T ss_pred Ee
Confidence 43
No 221
>KOG1499|consensus
Probab=96.93 E-value=0.0037 Score=66.96 Aligned_cols=115 Identities=15% Similarity=0.100 Sum_probs=78.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~~~ 255 (646)
.+..|||++||+|-.++..|.+ +...|+|+|.+.-. +.+.+.++.++..+ |.++.+.+..+ .+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akA---------GA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi-~L----- 123 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKA---------GARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI-EL----- 123 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHh---------CcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE-ec-----
Confidence 5779999999999999988876 57799999988766 88888888899887 56777766554 11
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC--Ccccc
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL--NPLED 330 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl--~p~EN 330 (646)
+.++.|+|+.. -.|.+- -.-...-.+|-.=-+.|++||.+.=++|++ .+.++
T Consensus 124 ----P~eKVDiIvSE----WMGy~L---------------l~EsMldsVl~ARdkwL~~~G~i~P~~a~l~l~~i~d 177 (346)
T KOG1499|consen 124 ----PVEKVDIIVSE----WMGYFL---------------LYESMLDSVLYARDKWLKEGGLIYPDRATLYLAAIED 177 (346)
T ss_pred ----CccceeEEeeh----hhhHHH---------------HHhhhhhhhhhhhhhccCCCceEccccceEEEEeccC
Confidence 12689999863 222100 000111122333347899999998888885 34444
No 222
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=96.91 E-value=0.0036 Score=61.27 Aligned_cols=115 Identities=16% Similarity=0.159 Sum_probs=63.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC---CCCeEEEecCCCCCcccc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN---SPCAIITNHDASVMPNVL 251 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg---~~ni~v~~~Da~~~p~~~ 251 (646)
..++.+||++|||.|--++.++.+. +...|++-|.++ -+..++.|+++++ ..++.+...|=.......
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~--------~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~ 113 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLF--------GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSD 113 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT---------T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHH
T ss_pred hcCCceEEEECCccchhHHHHHhcc--------CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCccccc
Confidence 4567899999999997777776652 366899999999 9999999999876 344555554422210000
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCc
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNP 327 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p 327 (646)
. .....||.||+ .|++ |.+ .....++....++|+++|.++ ..+..-.
T Consensus 114 ~------~~~~~~D~Ila-------------sDv~--Y~~-------~~~~~L~~tl~~ll~~~~~vl-~~~~~R~ 160 (173)
T PF10294_consen 114 L------LEPHSFDVILA-------------SDVL--YDE-------ELFEPLVRTLKRLLKPNGKVL-LAYKRRR 160 (173)
T ss_dssp H------HS-SSBSEEEE-------------ES----S-G-------GGHHHHHHHHHHHBTT-TTEE-EEEE-S-
T ss_pred c------cccccCCEEEE-------------eccc--chH-------HHHHHHHHHHHHHhCCCCEEE-EEeCEec
Confidence 0 01247999985 1221 111 122356777778899999944 4455543
No 223
>KOG1253|consensus
Probab=96.82 E-value=0.0011 Score=73.66 Aligned_cols=112 Identities=21% Similarity=0.256 Sum_probs=84.8
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEecCCCCCcccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCA-IITNHDASVMPNVL 251 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni-~v~~~Da~~~p~~~ 251 (646)
-.-.++-+|||.-+|+|--++.-|..+. +-+.|+|||.++..+.....|++.+++.++ +....||..+--..
T Consensus 105 ~~~~~~l~vLealsAtGlrslRya~El~-------~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~ 177 (525)
T KOG1253|consen 105 KREEKSLRVLEALSATGLRSLRYAKELP-------GVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEH 177 (525)
T ss_pred hhccCcchHHHHhhhhhHHHHHHHHHhc-------chhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhc
Confidence 3445678999999999999999988875 567899999999999999999999988764 45666765421100
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
. .....||+|=+||= |+ |. ..|+.|++.++.||.| +.|||
T Consensus 178 ---~---~~~~~FDvIDLDPy----Gs----~s------------------~FLDsAvqav~~gGLL-~vT~T 217 (525)
T KOG1253|consen 178 ---P---MVAKFFDVIDLDPY----GS----PS------------------PFLDSAVQAVRDGGLL-CVTCT 217 (525)
T ss_pred ---c---ccccccceEecCCC----CC----cc------------------HHHHHHHHHhhcCCEE-EEEec
Confidence 0 11257999999974 32 11 4699999999999955 57888
No 224
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=96.62 E-value=0.0041 Score=63.27 Aligned_cols=127 Identities=19% Similarity=0.120 Sum_probs=79.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHH------------cCCCCeEEEe
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR------------LNSPCAIITN 241 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~r------------lg~~ni~v~~ 241 (646)
...++.+||+-+||.|-=...||+. .-.|+|+|+++..++.+.+.... ....+|.+.+
T Consensus 34 ~~~~~~rvLvPgCG~g~D~~~La~~----------G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~ 103 (218)
T PF05724_consen 34 ALKPGGRVLVPGCGKGYDMLWLAEQ----------GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYC 103 (218)
T ss_dssp TTSTSEEEEETTTTTSCHHHHHHHT----------TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEE
T ss_pred CCCCCCeEEEeCCCChHHHHHHHHC----------CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEE
Confidence 4577889999999999988888864 23799999999998887432111 1223578889
Q ss_pred cCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 242 HDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 242 ~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
+|...++... .++||.|. | |...-.+ .|+.+. +-.++..++|+|||++++.
T Consensus 104 gDfF~l~~~~---------~g~fD~iy-D--r~~l~Al--pp~~R~---------------~Ya~~l~~ll~p~g~~lLi 154 (218)
T PF05724_consen 104 GDFFELPPED---------VGKFDLIY-D--RTFLCAL--PPEMRE---------------RYAQQLASLLKPGGRGLLI 154 (218)
T ss_dssp S-TTTGGGSC---------HHSEEEEE-E--CSSTTTS---GGGHH---------------HHHHHHHHCEEEEEEEEEE
T ss_pred cccccCChhh---------cCCceEEE-E--ecccccC--CHHHHH---------------HHHHHHHHHhCCCCcEEEE
Confidence 9987765321 14688776 2 2222222 344432 4477788999999996655
Q ss_pred cCCCCcccc--------HHHHHHHHH
Q psy17365 322 TCSLNPLED--------EAVIQRLIV 339 (646)
Q Consensus 322 TCSl~p~EN--------E~VV~~~L~ 339 (646)
|=...+.+. ++-|.+++.
T Consensus 155 ~l~~~~~~~~GPPf~v~~~ev~~l~~ 180 (218)
T PF05724_consen 155 TLEYPQGEMEGPPFSVTEEEVRELFG 180 (218)
T ss_dssp EEES-CSCSSSSS----HHHHHHHHT
T ss_pred EEEcCCcCCCCcCCCCCHHHHHHHhc
Confidence 544433332 445555554
No 225
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=96.62 E-value=0.00078 Score=71.72 Aligned_cols=91 Identities=18% Similarity=0.176 Sum_probs=60.6
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
+|.++|+..++|+.-|-||.|.+|++.+. .|.|+|+|.|+..++.+.++++.. ..++.+++.+...+....
T Consensus 15 ~L~~~~~g~~vD~T~G~GGHS~aiL~~~~--------~~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l 85 (310)
T PF01795_consen 15 ALNPKPGGIYVDCTFGGGGHSKAILEKLP--------NGRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYL 85 (310)
T ss_dssp HHT--TT-EEEETT-TTSHHHHHHHHT-T--------T-EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHH
T ss_pred hhCcCCCceEEeecCCcHHHHHHHHHhCC--------CCeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHH
Confidence 45689999999999999999999998873 599999999999988877665544 456888888887775543
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTG 275 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG 275 (646)
... . ....+|.||+|-=+|.
T Consensus 86 ~~~-~---~~~~~dgiL~DLGvSS 105 (310)
T PF01795_consen 86 KEL-N---GINKVDGILFDLGVSS 105 (310)
T ss_dssp HHT-T---TTS-EEEEEEE-S--H
T ss_pred HHc-c---CCCccCEEEEccccCH
Confidence 211 0 1257999999976665
No 226
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=96.58 E-value=0.0065 Score=56.54 Aligned_cols=58 Identities=21% Similarity=0.192 Sum_probs=50.1
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDAS 245 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~ 245 (646)
.|||+||+.|..+..++... +.+.|+|+|.++..+..++++++.++.+++.+++....
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~--------~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKG--------AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhC--------CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeee
Confidence 48999999999999888763 45699999999999999999999998888888776654
No 227
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=96.55 E-value=0.011 Score=67.37 Aligned_cols=177 Identities=14% Similarity=0.081 Sum_probs=98.8
Q ss_pred cccccEEEecccccccccccCCC--CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy17365 154 NATGHISRQEAVSMIPPLLLDVQ--THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR 231 (646)
Q Consensus 154 ~~~G~i~~Qd~~Sml~~~~Ld~~--pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~r 231 (646)
+..|.++.-...+.+.+.++++. |+..|.|+|||+|+.-......++. .. ..-.+++.+.......+.+.|+.-
T Consensus 192 t~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~-~q---e~~~~~gqe~~~~~~~~a~mnm~l 267 (501)
T TIGR00497 192 KSGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGE-KT---SLVSYYGQEINHTTYNLCRMNMIL 267 (501)
T ss_pred CcCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcc-cc---cceeEEEEeCchHHHHHHHHHHHH
Confidence 34566655544454555566654 7789999999999987665443320 00 134689999999988777777654
Q ss_pred cCCC--CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCc---ccccCccccccCCcchhhhhHHHHHHHHH
Q psy17365 232 LNSP--CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDG---TMRKNPDIWTKWTPSNGNNLHGIQYRIVK 306 (646)
Q Consensus 232 lg~~--ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G---~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~ 306 (646)
.+.. ...+..+|...-+.. .....||.|+++||.+..- ......+.-+.|....+..+.......+.
T Consensus 268 ~~~~~~t~~~~~~dtl~~~d~--------~~~~~~D~v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~ 339 (501)
T TIGR00497 268 HNIDYANFNIINADTLTTKEW--------ENENGFEVVVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVL 339 (501)
T ss_pred cCCCccccCcccCCcCCCccc--------cccccCCEEeecCCcccccccccccccccccchhcccCCCCCchhhHHHHH
Confidence 4432 223333443221111 1124699999999987641 11100011111222222344556778888
Q ss_pred HHHHhhccCCeEEE--EcCCCCccccHHHHHHHHHHcc
Q psy17365 307 RGVEMLAVGGKIAY--STCSLNPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 307 ~A~~lLKpGG~LVY--STCSl~p~ENE~VV~~~L~~~~ 342 (646)
+++..|++||+..- ..-.++..-.|.++...+-.++
T Consensus 340 h~~~~L~~gG~~aiI~~~gvl~~~~~e~~ir~~lL~~~ 377 (501)
T TIGR00497 340 HALYVLGQEGTAAIVCFPGILYREGKEQTIRKYLVDQN 377 (501)
T ss_pred HHHHhcCCCCeEEEEecCCcccCCCchHHHHHHHHHcC
Confidence 99999999996432 2222332222445555554443
No 228
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=96.55 E-value=0.0047 Score=64.38 Aligned_cols=84 Identities=19% Similarity=0.213 Sum_probs=63.6
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
..+++.+++.|||+++|+|..|..|++. ...|+|+|+|+..+..|++... ..+++.++++|+..+...
T Consensus 24 ~~~~~~~~~~VlEiGpG~G~lT~~L~~~----------~~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~~ 91 (262)
T PF00398_consen 24 DALDLSEGDTVLEIGPGPGALTRELLKR----------GKRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDLY 91 (262)
T ss_dssp HHHTCGTTSEEEEESSTTSCCHHHHHHH----------SSEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCGG
T ss_pred HhcCCCCCCEEEEeCCCCccchhhHhcc----------cCcceeecCcHhHHHHHHHHhh--hcccceeeecchhccccH
Confidence 3467779999999999999999999876 2689999999999999987655 467899999999876432
Q ss_pred cccCCCCCCCCCCCCeeecCCCC
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPC 273 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PC 273 (646)
.. .......|+.+.|.
T Consensus 92 ~~-------~~~~~~~vv~NlPy 107 (262)
T PF00398_consen 92 DL-------LKNQPLLVVGNLPY 107 (262)
T ss_dssp GH-------CSSSEEEEEEEETG
T ss_pred Hh-------hcCCceEEEEEecc
Confidence 11 01234577777774
No 229
>KOG1500|consensus
Probab=96.49 E-value=0.011 Score=62.87 Aligned_cols=122 Identities=18% Similarity=0.169 Sum_probs=81.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.|..|||++||+|..+..+|++ +...|+|+|.+.- ++.++..++-+++ ..|.|+.+...++
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqA---------GA~~vYAvEAS~M-AqyA~~Lv~~N~~~~rItVI~GKiEdi-------- 238 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQA---------GAKKVYAVEASEM-AQYARKLVASNNLADRITVIPGKIEDI-------- 238 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHh---------CcceEEEEehhHH-HHHHHHHHhcCCccceEEEccCccccc--------
Confidence 3678999999999999988876 5779999998754 3444444544443 4577777665543
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC---CCccccHH
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS---LNPLEDEA 332 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS---l~p~ENE~ 332 (646)
.-+++.|+|+..|- |++--|... ++---+|-++|||.|.+. -|-+ +.|--+|.
T Consensus 239 ---eLPEk~DviISEPM----G~mL~NERM----------------LEsYl~Ark~l~P~GkMf-PT~gdiHlAPFsDE~ 294 (517)
T KOG1500|consen 239 ---ELPEKVDVIISEPM----GYMLVNERM----------------LESYLHARKWLKPNGKMF-PTVGDIHLAPFSDEQ 294 (517)
T ss_pred ---cCchhccEEEeccc----hhhhhhHHH----------------HHHHHHHHhhcCCCCccc-CcccceeecccchHH
Confidence 12468999998764 665433222 122335679999999875 4433 77888887
Q ss_pred HHHHHHHH
Q psy17365 333 VIQRLIVE 340 (646)
Q Consensus 333 VV~~~L~~ 340 (646)
.--+-..+
T Consensus 295 Ly~E~~nk 302 (517)
T KOG1500|consen 295 LYVEQFNK 302 (517)
T ss_pred HHHHHHhh
Confidence 76655544
No 230
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=96.48 E-value=0.014 Score=56.14 Aligned_cols=80 Identities=19% Similarity=0.230 Sum_probs=56.9
Q ss_pred EEEcCCHHHHHHHHHHHHHc---CCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccC
Q psy17365 213 VANDVDNNRCYMLVHQAKRL---NSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKW 289 (646)
Q Consensus 213 vA~Dis~~Rl~~L~~n~~rl---g~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w 289 (646)
+|+|+|+..++.++++.+.. +..++.++.+|+..+|. ....||.|++. .+ ++.-+|
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~----------~~~~fD~v~~~-----~~-l~~~~d----- 59 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPF----------DDCEFDAVTMG-----YG-LRNVVD----- 59 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCC----------CCCCeeEEEec-----ch-hhcCCC-----
Confidence 37899999999987765432 24578999999988762 12479999862 22 222122
Q ss_pred CcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 290 TPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 290 ~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
..+.|+++.++|||||+++....+
T Consensus 60 -----------~~~~l~ei~rvLkpGG~l~i~d~~ 83 (160)
T PLN02232 60 -----------RLRAMKEMYRVLKPGSRVSILDFN 83 (160)
T ss_pred -----------HHHHHHHHHHHcCcCeEEEEEECC
Confidence 247899999999999999876555
No 231
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=96.45 E-value=0.003 Score=62.62 Aligned_cols=70 Identities=24% Similarity=0.222 Sum_probs=55.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.|.+|||+|||+|--+...+.. +...|++.|+++.....+..|++.+|+ +|.++..|...
T Consensus 79 rgkrVLd~gagsgLvaIAaa~a---------GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~g---------- 138 (218)
T COG3897 79 RGKRVLDLGAGSGLVAIAAARA---------GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLIG---------- 138 (218)
T ss_pred ccceeeecccccChHHHHHHHh---------hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeeccccC----------
Confidence 4889999999999876655543 477899999999999999999999885 46777777543
Q ss_pred CCCCCCCCCeeec
Q psy17365 257 GNKVPMKFDRVLC 269 (646)
Q Consensus 257 g~~~~~~FD~IL~ 269 (646)
....||.||+
T Consensus 139 ---~~~~~Dl~La 148 (218)
T COG3897 139 ---SPPAFDLLLA 148 (218)
T ss_pred ---CCcceeEEEe
Confidence 1357999997
No 232
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=96.34 E-value=0.035 Score=59.72 Aligned_cols=134 Identities=10% Similarity=-0.000 Sum_probs=83.8
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEE--EecCCCCCcccccc
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAII--TNHDASVMPNVLYT 253 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v--~~~Da~~~p~~~~~ 253 (646)
.++..++|+|||.|.||..|++.+.... ..-.-+++|+|...+..+..++..-..+.+.+ +++|.........
T Consensus 75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~----~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~- 149 (319)
T TIGR03439 75 PSGSMLVELGSGNLRKVGILLEALERQK----KSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLK- 149 (319)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHhcC----CCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcc-
Confidence 4677899999999999999999885211 13467999999999998888887444566665 6666544211100
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHH-hhccCCeEEEEcCCCCccccHH
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVE-MLAVGGKIAYSTCSLNPLEDEA 332 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~-lLKpGG~LVYSTCSl~p~ENE~ 332 (646)
.+.. ......|+. |=|..|- ..+. -...+|.+..+ .|+|||.|+.. +.-..+.+
T Consensus 150 ~~~~---~~~~r~~~f--lGSsiGN----------f~~~-------ea~~fL~~~~~~~l~~~d~lLiG---~D~~k~~~ 204 (319)
T TIGR03439 150 RPEN---RSRPTTILW--LGSSIGN----------FSRP-------EAAAFLAGFLATALSPSDSFLIG---LDGCKDPD 204 (319)
T ss_pred cccc---cCCccEEEE--eCccccC----------CCHH-------HHHHHHHHHHHhhCCCCCEEEEe---cCCCCCHH
Confidence 0000 122444443 3233331 1111 22467778778 99999999975 35556666
Q ss_pred HHHHHHH
Q psy17365 333 VIQRLIV 339 (646)
Q Consensus 333 VV~~~L~ 339 (646)
+|..+-.
T Consensus 205 ~l~~AY~ 211 (319)
T TIGR03439 205 KVLRAYN 211 (319)
T ss_pred HHHHHhc
Confidence 7655443
No 233
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=96.33 E-value=0.013 Score=59.16 Aligned_cols=120 Identities=14% Similarity=0.050 Sum_probs=65.6
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHH-------HcCC--CCeEEEec
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAK-------RLNS--PCAIITNH 242 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~-------rlg~--~ni~v~~~ 242 (646)
.+++.+++..+|+|||-|.-..++|-.. +-...+++|+.+.+...+..+.+ .+|. ..+.+..+
T Consensus 37 ~~~l~~~dvF~DlGSG~G~~v~~aal~~--------~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~g 108 (205)
T PF08123_consen 37 ELNLTPDDVFYDLGSGVGNVVFQAALQT--------GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHG 108 (205)
T ss_dssp HTT--TT-EEEEES-TTSHHHHHHHHHH----------SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS
T ss_pred HhCCCCCCEEEECCCCCCHHHHHHHHHc--------CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeecc
Confidence 3568899999999999999988888554 35579999999998876655433 3343 34666777
Q ss_pred CCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 243 DASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 243 Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
|....+.... ....-|+|+++.=|-+. ++ ..-|...+..||+|-++| ||
T Consensus 109 dfl~~~~~~~-------~~s~AdvVf~Nn~~F~~-------~l----------------~~~L~~~~~~lk~G~~II-s~ 157 (205)
T PF08123_consen 109 DFLDPDFVKD-------IWSDADVVFVNNTCFDP-------DL----------------NLALAELLLELKPGARII-ST 157 (205)
T ss_dssp -TTTHHHHHH-------HGHC-SEEEE--TTT-H-------HH----------------HHHHHHHHTTS-TT-EEE-ES
T ss_pred CccccHhHhh-------hhcCCCEEEEeccccCH-------HH----------------HHHHHHHHhcCCCCCEEE-EC
Confidence 7654221100 01346899998655432 21 112355566789876665 77
Q ss_pred CCCCcccc
Q psy17365 323 CSLNPLED 330 (646)
Q Consensus 323 CSl~p~EN 330 (646)
=++.|..-
T Consensus 158 ~~~~~~~~ 165 (205)
T PF08123_consen 158 KPFCPRRR 165 (205)
T ss_dssp S-SS-TT-
T ss_pred CCcCCCCc
Confidence 77777653
No 234
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=96.29 E-value=0.037 Score=55.64 Aligned_cols=142 Identities=16% Similarity=0.200 Sum_probs=87.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeE-EEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAI-ITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~-v~~~Da~~~p~~~~~~~~ 256 (646)
+.+||+++||+|-.+.+.|..+ |.-.-.--|.+...+..+...+...+.+|+. .+..|++..+-... ..
T Consensus 26 ~~~vLEiaSGtGqHa~~FA~~l--------P~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~--~~ 95 (204)
T PF06080_consen 26 GTRVLEIASGTGQHAVYFAQAL--------PHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWE--LP 95 (204)
T ss_pred CceEEEEcCCccHHHHHHHHHC--------CCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccc--cc
Confidence 3369999999999999999987 4556677899999988888888888888753 34455554321100 00
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE-EEcCCC---CccccHH
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA-YSTCSL---NPLEDEA 332 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV-YSTCSl---~p~ENE~ 332 (646)
.......||.|+|=- ++.-. -| ..-..++..|.++|++||.|+ |=.-.. ...|.-+
T Consensus 96 ~~~~~~~~D~i~~~N------~lHI~-----p~---------~~~~~lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~ 155 (204)
T PF06080_consen 96 APLSPESFDAIFCIN------MLHIS-----PW---------SAVEGLFAGAARLLKPGGLLFLYGPFNRDGKFTSESNA 155 (204)
T ss_pred cccCCCCcceeeehh------HHHhc-----CH---------HHHHHHHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHH
Confidence 001235799998621 11101 11 122478999999999999876 433332 2233344
Q ss_pred HHHHHHHHccCcEEEee
Q psy17365 333 VIQRLIVETQGAVQLVD 349 (646)
Q Consensus 333 VV~~~L~~~~~~~elv~ 349 (646)
.....|+..+.++-+-|
T Consensus 156 ~FD~sLr~rdp~~GiRD 172 (204)
T PF06080_consen 156 AFDASLRSRDPEWGIRD 172 (204)
T ss_pred HHHHHHhcCCCCcCccC
Confidence 55666665543333333
No 235
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.25 E-value=0.0089 Score=60.73 Aligned_cols=131 Identities=15% Similarity=0.222 Sum_probs=84.0
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
+..+-.++||++||+|-..-.|-.+. .++.++|+|...++.+.+. |.-. .....|+..|...
T Consensus 122 ~~g~F~~~lDLGCGTGL~G~~lR~~a----------~~ltGvDiS~nMl~kA~eK----g~YD-~L~~Aea~~Fl~~--- 183 (287)
T COG4976 122 DLGPFRRMLDLGCGTGLTGEALRDMA----------DRLTGVDISENMLAKAHEK----GLYD-TLYVAEAVLFLED--- 183 (287)
T ss_pred cCCccceeeecccCcCcccHhHHHHH----------hhccCCchhHHHHHHHHhc----cchH-HHHHHHHHHHhhh---
Confidence 44456799999999998777665553 3788999999988766543 2110 1233444433221
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccc----
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLE---- 329 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~E---- 329 (646)
....+||.|..- ++.....--..++--+..+|+|||.+.||.=++.-.-
T Consensus 184 -----~~~er~DLi~Aa----------------------DVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l 236 (287)
T COG4976 184 -----LTQERFDLIVAA----------------------DVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL 236 (287)
T ss_pred -----ccCCcccchhhh----------------------hHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeec
Confidence 113679988641 1122222224678889999999999999987764443
Q ss_pred --------cHHHHHHHHHHccCcEEEeecc
Q psy17365 330 --------DEAVIQRLIVETQGAVQLVDVS 351 (646)
Q Consensus 330 --------NE~VV~~~L~~~~~~~elv~~~ 351 (646)
-|.-|...|+.++ ++++.+.
T Consensus 237 ~ps~RyAH~~~YVr~~l~~~G--l~~i~~~ 264 (287)
T COG4976 237 GPSQRYAHSESYVRALLAASG--LEVIAIE 264 (287)
T ss_pred chhhhhccchHHHHHHHHhcC--ceEEEee
Confidence 2566777787775 6666654
No 236
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=96.22 E-value=0.049 Score=54.99 Aligned_cols=120 Identities=14% Similarity=0.177 Sum_probs=84.0
Q ss_pred EEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCccccccCCCCCC
Q psy17365 181 VLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 181 VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
|.|+||--|.....|++.- ....++|+|+++.=++.+++++++.|.. .|.+..+|+.....
T Consensus 1 vaDIGtDHgyLpi~L~~~~--------~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~---------- 62 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNG--------KAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLK---------- 62 (205)
T ss_dssp EEEET-STTHHHHHHHHTT--------SEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG------------
T ss_pred CceeccchhHHHHHHHhcC--------CCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccC----------
Confidence 6899999999999988752 3558999999999999999999999965 48888888754211
Q ss_pred CCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHH
Q psy17365 260 VPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIV 339 (646)
Q Consensus 260 ~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~ 339 (646)
.....|.|+. .|.| ..+-.+||.++...++...++|. .|.-+...+...|.
T Consensus 63 ~~e~~d~ivI----AGMG--------------------G~lI~~ILe~~~~~~~~~~~lIL-----qP~~~~~~LR~~L~ 113 (205)
T PF04816_consen 63 PGEDVDTIVI----AGMG--------------------GELIIEILEAGPEKLSSAKRLIL-----QPNTHAYELRRWLY 113 (205)
T ss_dssp GGG---EEEE----EEE---------------------HHHHHHHHHHTGGGGTT--EEEE-----EESS-HHHHHHHHH
T ss_pred CCCCCCEEEE----ecCC--------------------HHHHHHHHHhhHHHhccCCeEEE-----eCCCChHHHHHHHH
Confidence 0122676665 4555 23556899999888877667876 35568899999999
Q ss_pred HccCcEEEee
Q psy17365 340 ETQGAVQLVD 349 (646)
Q Consensus 340 ~~~~~~elv~ 349 (646)
+++ |.+++
T Consensus 114 ~~g--f~I~~ 121 (205)
T PF04816_consen 114 ENG--FEIID 121 (205)
T ss_dssp HTT--EEEEE
T ss_pred HCC--CEEEE
Confidence 986 66665
No 237
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=96.15 E-value=0.013 Score=59.99 Aligned_cols=74 Identities=19% Similarity=0.228 Sum_probs=48.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe-EEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCA-IITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni-~v~~~Da~~~p~~~~~~~ 255 (646)
+|..+||++|.+||+|-.+++. ++..|+|+|+...-++.=-+ .. +.| ..-..++..+...
T Consensus 79 k~kv~LDiGsSTGGFTd~lLq~---------gAk~VyavDVG~~Ql~~kLR----~d-~rV~~~E~tN~r~l~~~----- 139 (245)
T COG1189 79 KGKVVLDIGSSTGGFTDVLLQR---------GAKHVYAVDVGYGQLHWKLR----ND-PRVIVLERTNVRYLTPE----- 139 (245)
T ss_pred CCCEEEEecCCCccHHHHHHHc---------CCcEEEEEEccCCccCHhHh----cC-CcEEEEecCChhhCCHH-----
Confidence 5889999999999999998876 57899999998755432211 12 222 2333444433211
Q ss_pred CCCCCCCCCCeeecCCC
Q psy17365 256 DGNKVPMKFDRVLCDVP 272 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~P 272 (646)
......|.|+||+.
T Consensus 140 ---~~~~~~d~~v~DvS 153 (245)
T COG1189 140 ---DFTEKPDLIVIDVS 153 (245)
T ss_pred ---HcccCCCeEEEEee
Confidence 11236899999986
No 238
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.14 E-value=0.031 Score=58.91 Aligned_cols=78 Identities=19% Similarity=0.259 Sum_probs=55.6
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
+|+|+|||-||.+.-+-+. +--.|.|+|+++..++...+|.. .+..+|.+.+.....
T Consensus 2 ~~~dlFsG~Gg~~~g~~~a---------g~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~l------- 58 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQA---------GFEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSDL------- 58 (335)
T ss_dssp EEEEET-TTTHHHHHHHHT---------TEEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHHH-------
T ss_pred cEEEEccCccHHHHHHHhc---------CcEEEEEeecCHHHHHhhhhccc-------ccccccccccccccc-------
Confidence 6999999999999877543 23479999999999999988865 567788877643211
Q ss_pred CCCCCCeeecCCCCCCCccccc
Q psy17365 260 VPMKFDRVLCDVPCTGDGTMRK 281 (646)
Q Consensus 260 ~~~~FD~IL~D~PCSG~G~lrk 281 (646)
+..+|+++.-+||.+.-...+
T Consensus 59 -~~~~D~l~ggpPCQ~fS~ag~ 79 (335)
T PF00145_consen 59 -PKDVDLLIGGPPCQGFSIAGK 79 (335)
T ss_dssp -HHT-SEEEEE---TTTSTTST
T ss_pred -cccceEEEeccCCceEecccc
Confidence 114999999999999877654
No 239
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=96.08 E-value=0.0012 Score=58.56 Aligned_cols=103 Identities=16% Similarity=0.110 Sum_probs=41.5
Q ss_pred EEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCccccccCCCCCCC
Q psy17365 182 LDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYTDADGNKV 260 (646)
Q Consensus 182 LDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~~~~g~~~ 260 (646)
|+++++.|.-|..+++.+... ..+.++++|..+. .+.....+++.+.. ++.++.++.........
T Consensus 1 lEiG~~~G~st~~l~~~~~~~-----~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-------- 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDN-----GRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-------- 66 (106)
T ss_dssp -------------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH--------
T ss_pred Ccccccccccccccccccccc-----ccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC--------
Confidence 578899999999999887511 2358999999995 22233334444543 58889988765322110
Q ss_pred CCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 261 PMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 261 ~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
..+||.|++|+.-+..+ ...-+..+.+.|+|||.||+=
T Consensus 67 ~~~~dli~iDg~H~~~~-----------------------~~~dl~~~~~~l~~ggviv~d 104 (106)
T PF13578_consen 67 DGPIDLIFIDGDHSYEA-----------------------VLRDLENALPRLAPGGVIVFD 104 (106)
T ss_dssp H--EEEEEEES---HHH-----------------------HHHHHHHHGGGEEEEEEEEEE
T ss_pred CCCEEEEEECCCCCHHH-----------------------HHHHHHHHHHHcCCCeEEEEe
Confidence 25799999998633222 235588889999999999863
No 240
>KOG2361|consensus
Probab=95.90 E-value=0.017 Score=59.13 Aligned_cols=109 Identities=11% Similarity=0.078 Sum_probs=69.5
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
+||.+|||-|....-|++--. .+.-.|+|+|.++..++.++++....- .++.....|.+.-. . .+..
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~------n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~afv~Dlt~~~-~-----~~~~ 140 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSP------NNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAFVWDLTSPS-L-----KEPP 140 (264)
T ss_pred hheeeccCCCcccchhhhcCC------CCCeEEEEcCCChHHHHHHHhccccch-hhhcccceeccchh-c-----cCCC
Confidence 899999999999988876521 134789999999999999998876543 33444445554321 0 1112
Q ss_pred CCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 260 VPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 260 ~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
..+.+|.|.+==--|. -.|+ .+.+.+.+..++|||||.|++.
T Consensus 141 ~~~svD~it~IFvLSA-----i~pe---------------k~~~a~~nl~~llKPGG~llfr 182 (264)
T KOG2361|consen 141 EEGSVDIITLIFVLSA-----IHPE---------------KMQSVIKNLRTLLKPGGSLLFR 182 (264)
T ss_pred CcCccceEEEEEEEec-----cChH---------------HHHHHHHHHHHHhCCCcEEEEe
Confidence 2355665543100000 0122 2236688889999999999964
No 241
>KOG1975|consensus
Probab=95.86 E-value=0.038 Score=58.82 Aligned_cols=137 Identities=15% Similarity=0.106 Sum_probs=80.2
Q ss_pred ccccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC------CCCeEE
Q psy17365 166 SMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN------SPCAII 239 (646)
Q Consensus 166 Sml~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg------~~ni~v 239 (646)
|+|.-.+ .++++.||||+||-||-..-.-.+ +-|.+|++||..--++.++.+.+.+. +-.+.+
T Consensus 108 s~LI~~y--~~~~~~~~~LgCGKGGDLlKw~kA---------gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f 176 (389)
T KOG1975|consen 108 SVLINLY--TKRGDDVLDLGCGKGGDLLKWDKA---------GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVF 176 (389)
T ss_pred HHHHHHH--hccccccceeccCCcccHhHhhhh---------cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEE
Confidence 4444333 368899999999999965433221 45789999998877776666654332 112466
Q ss_pred EecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE
Q psy17365 240 TNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319 (646)
Q Consensus 240 ~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV 319 (646)
+.+|-+.-.-... ......+||+|=|---| .....-...-+.+|.++.+.|||||.++
T Consensus 177 ~~~Dc~~~~l~d~----~e~~dp~fDivScQF~~------------------HYaFetee~ar~~l~Nva~~LkpGG~FI 234 (389)
T KOG1975|consen 177 IAADCFKERLMDL----LEFKDPRFDIVSCQFAF------------------HYAFETEESARIALRNVAKCLKPGGVFI 234 (389)
T ss_pred EEeccchhHHHHh----ccCCCCCcceeeeeeeE------------------eeeeccHHHHHHHHHHHHhhcCCCcEEE
Confidence 6666543110000 00011238877653211 1111112223467899999999999998
Q ss_pred EEcCCCCccccHHHHHHHHHHc
Q psy17365 320 YSTCSLNPLEDEAVIQRLIVET 341 (646)
Q Consensus 320 YSTCSl~p~ENE~VV~~~L~~~ 341 (646)
=++ -|-.||-+-|+..
T Consensus 235 gTi------Pdsd~Ii~rlr~~ 250 (389)
T KOG1975|consen 235 GTI------PDSDVIIKRLRAG 250 (389)
T ss_pred Eec------CcHHHHHHHHHhc
Confidence 442 4666887777764
No 242
>KOG3010|consensus
Probab=95.61 E-value=0.042 Score=56.32 Aligned_cols=125 Identities=17% Similarity=0.119 Sum_probs=67.1
Q ss_pred CCCCC-eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 175 VQTHH-KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 175 ~~pg~-~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
..+++ .++|++||+| .|+.+++-. --.|||.|++...++.++.. . ++.- ++-.+.+.+-...
T Consensus 30 ~~~~h~~a~DvG~G~G-qa~~~iae~---------~k~VIatD~s~~mL~~a~k~-----~-~~~y-~~t~~~ms~~~~v 92 (261)
T KOG3010|consen 30 RTEGHRLAWDVGTGNG-QAARGIAEH---------YKEVIATDVSEAMLKVAKKH-----P-PVTY-CHTPSTMSSDEMV 92 (261)
T ss_pred hCCCcceEEEeccCCC-cchHHHHHh---------hhhheeecCCHHHHHHhhcC-----C-Cccc-ccCCccccccccc
Confidence 34555 7999999999 555544332 13799999999998876543 1 1111 1111111100000
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC-CccccHH
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL-NPLEDEA 332 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl-~p~ENE~ 332 (646)
...|. .++.|.|+|= -|- .|- .| .+....|.++||+.|-++-.=|.. +..-+.+
T Consensus 93 ~L~g~--e~SVDlI~~A-qa~-------------HWF-----dl----e~fy~~~~rvLRk~Gg~iavW~Y~dd~v~~pE 147 (261)
T KOG3010|consen 93 DLLGG--EESVDLITAA-QAV-------------HWF-----DL----ERFYKEAYRVLRKDGGLIAVWNYNDDFVDWPE 147 (261)
T ss_pred cccCC--Ccceeeehhh-hhH-------------Hhh-----ch----HHHHHHHHHHcCCCCCEEEEEEccCCCcCCHH
Confidence 01111 3678988861 110 120 11 256778889998877332222222 6667777
Q ss_pred HHHHHHHHc
Q psy17365 333 VIQRLIVET 341 (646)
Q Consensus 333 VV~~~L~~~ 341 (646)
+..-+++.+
T Consensus 148 ~dsv~~r~~ 156 (261)
T KOG3010|consen 148 FDSVMLRLY 156 (261)
T ss_pred HHHHHHHHh
Confidence 766666554
No 243
>PRK00536 speE spermidine synthase; Provisional
Probab=95.53 E-value=0.14 Score=53.61 Aligned_cols=120 Identities=13% Similarity=0.036 Sum_probs=75.4
Q ss_pred ccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHH----cCCCCeEEEecCCC
Q psy17365 170 PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR----LNSPCAIITNHDAS 245 (646)
Q Consensus 170 ~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~r----lg~~ni~v~~~Da~ 245 (646)
+++.-+.| .+||=+|.|-|+..-.++.. +. .|+-+|+|+.-++..++-+-. +.-+++.++..
T Consensus 66 pl~~h~~p-k~VLIiGGGDGg~~REvLkh---------~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~--- 131 (262)
T PRK00536 66 GGCTKKEL-KEVLIVDGFDLELAHQLFKY---------DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ--- 131 (262)
T ss_pred HHhhCCCC-CeEEEEcCCchHHHHHHHCc---------CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh---
Confidence 33444444 68999999999988777643 33 999999999999888874332 33345655541
Q ss_pred CCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC
Q psy17365 246 VMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL 325 (646)
Q Consensus 246 ~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl 325 (646)
+.. ....+||+|++|.. ++ ....+.+.+.|+|||.+|.=+-|.
T Consensus 132 -~~~---------~~~~~fDVIIvDs~----------~~-----------------~~fy~~~~~~L~~~Gi~v~Qs~sp 174 (262)
T PRK00536 132 -LLD---------LDIKKYDLIICLQE----------PD-----------------IHKIDGLKRMLKEDGVFISVAKHP 174 (262)
T ss_pred -hhh---------ccCCcCCEEEEcCC----------CC-----------------hHHHHHHHHhcCCCcEEEECCCCc
Confidence 110 01257999999942 11 133456678899999998633332
Q ss_pred CccccHHHHHHHHHHcc
Q psy17365 326 NPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 326 ~p~ENE~VV~~~L~~~~ 342 (646)
. =...++..+.+...
T Consensus 175 ~--~~~~~~~~i~~~l~ 189 (262)
T PRK00536 175 L--LEHVSMQNALKNMG 189 (262)
T ss_pred c--cCHHHHHHHHHHHH
Confidence 2 23445555555443
No 244
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=95.52 E-value=0.19 Score=49.03 Aligned_cols=139 Identities=18% Similarity=0.188 Sum_probs=86.9
Q ss_pred CCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHH-----HHHHHHHHHHcCCCCe-EEEecCCCCCccccccCCCCCCC
Q psy17365 187 APGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNR-----CYMLVHQAKRLNSPCA-IITNHDASVMPNVLYTDADGNKV 260 (646)
Q Consensus 187 aPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~R-----l~~L~~n~~rlg~~ni-~v~~~Da~~~p~~~~~~~~g~~~ 260 (646)
|-=|.|..||...+ ....|+|.-.+... ......|++.+...++ +....||+.+..... ..
T Consensus 6 GdfSFs~sL~~~~~-------~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~~g~~V~~~VDat~l~~~~~------~~ 72 (166)
T PF10354_consen 6 GDFSFSLSLARAFG-------SATNLVATSYDSEEELLQKYPDAEENLEELRELGVTVLHGVDATKLHKHFR------LK 72 (166)
T ss_pred cchHHHHHHHHHcC-------CCCeEEEeecCchHHHHHhcccHHHHHHHHhhcCCccccCCCCCccccccc------cc
Confidence 33456666776643 13456665444331 1123355555533333 456778988765331 12
Q ss_pred CCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHH
Q psy17365 261 PMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVE 340 (646)
Q Consensus 261 ~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~ 340 (646)
...||+|+-+=|+.|.|. +....++.....+-...+..|.++|+++|.+..+-|.-.|- +...|..+-++
T Consensus 73 ~~~FDrIiFNFPH~G~~~---------~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~~py-~~W~i~~lA~~ 142 (166)
T PF10354_consen 73 NQRFDRIIFNFPHVGGGS---------EDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDGQPY-DSWNIEELAAE 142 (166)
T ss_pred CCcCCEEEEeCCCCCCCc---------cchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCCC-ccccHHHHHHh
Confidence 367999999999998553 22334455556677789999999999999999999998775 55555555555
Q ss_pred ccCcEEEeec
Q psy17365 341 TQGAVQLVDV 350 (646)
Q Consensus 341 ~~~~~elv~~ 350 (646)
.+ +.++..
T Consensus 143 ~g--l~l~~~ 150 (166)
T PF10354_consen 143 AG--LVLVRK 150 (166)
T ss_pred cC--CEEEEE
Confidence 43 555543
No 245
>PRK04148 hypothetical protein; Provisional
Probab=95.46 E-value=0.089 Score=49.59 Aligned_cols=67 Identities=7% Similarity=-0.076 Sum_probs=45.8
Q ss_pred CCCeEEEEcCCCch-HHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGS-KTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGg-KT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.+.+|||+|+|.|. .+..|+++ ...|+|+|+++.+++.++++ + +.++..|.......
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~----------G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~p~~~----- 73 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKES----------GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFNPNLE----- 73 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHC----------CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCCCCHH-----
Confidence 45789999999996 55455432 34899999999987666544 3 45677787653221
Q ss_pred CCCCCCCCCCeeec
Q psy17365 256 DGNKVPMKFDRVLC 269 (646)
Q Consensus 256 ~g~~~~~~FD~IL~ 269 (646)
....+|.|..
T Consensus 74 ----~y~~a~liys 83 (134)
T PRK04148 74 ----IYKNAKLIYS 83 (134)
T ss_pred ----HHhcCCEEEE
Confidence 1246888875
No 246
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=95.35 E-value=0.16 Score=53.80 Aligned_cols=115 Identities=18% Similarity=0.138 Sum_probs=65.7
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHH---HHc-CC--------------------
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQA---KRL-NS-------------------- 234 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~---~rl-g~-------------------- 234 (646)
-+||.++|++|-=+--||-++..........-.|+|.|+|...++.+++-+ ..+ ++
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~~ 196 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGLV 196 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCceE
Confidence 589999999996443333333211000001357999999999988776642 000 00
Q ss_pred -------CCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHH
Q psy17365 235 -------PCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKR 307 (646)
Q Consensus 235 -------~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~ 307 (646)
..|.+..+|....+ ......||.|+|=- ++ +.--...|.+++.+
T Consensus 197 ~v~~~lr~~V~F~~~NL~~~~---------~~~~~~fD~I~cRN-------------vl-------iyF~~~~~~~vl~~ 247 (287)
T PRK10611 197 RVRQELANYVDFQQLNLLAKQ---------WAVPGPFDAIFCRN-------------VM-------IYFDKTTQERILRR 247 (287)
T ss_pred EEChHHHccCEEEcccCCCCC---------CccCCCcceeeHhh-------------HH-------hcCCHHHHHHHHHH
Confidence 11233333332210 01135799999721 10 00112467899999
Q ss_pred HHHhhccCCeEEEEc
Q psy17365 308 GVEMLAVGGKIAYST 322 (646)
Q Consensus 308 A~~lLKpGG~LVYST 322 (646)
..+.|+|||.|+...
T Consensus 248 l~~~L~pgG~L~lG~ 262 (287)
T PRK10611 248 FVPLLKPDGLLFAGH 262 (287)
T ss_pred HHHHhCCCcEEEEeC
Confidence 999999999998763
No 247
>KOG2782|consensus
Probab=95.35 E-value=0.0079 Score=60.50 Aligned_cols=97 Identities=18% Similarity=0.176 Sum_probs=67.9
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccc
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
.+|.|.+|...+||.-|.||.|..|++.- +...++|.|.||-.-+++......+--+.+..+.+..+.++.+
T Consensus 37 ~~lspv~g~sf~DmTfGagGHt~~ilqk~--------se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l 108 (303)
T KOG2782|consen 37 DILSPVRGRSFVDMTFGAGGHTSSILQKH--------SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSL 108 (303)
T ss_pred HHcCCCCCceEEEEeccCCcchHHHHHhC--------cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHH
Confidence 34678999999999999999999999873 4778999999998877776666433223333334444444433
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcc
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGT 278 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~ 278 (646)
.. +.......||-||.|--||+.-.
T Consensus 109 ~~---~~gl~~~~vDGiLmDlGcSSMQ~ 133 (303)
T KOG2782|consen 109 IA---DTGLLDVGVDGILMDLGCSSMQV 133 (303)
T ss_pred HH---HhCCCcCCcceEEeecCcccccc
Confidence 21 11122467999999999998653
No 248
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=95.21 E-value=0.084 Score=57.11 Aligned_cols=95 Identities=18% Similarity=0.218 Sum_probs=66.8
Q ss_pred CCCCCCeEEEEcCC-CchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 174 DVQTHHKVLDMCAA-PGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 174 d~~pg~~VLDmCAa-PGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+++||++|+=.++| -|..+.|+|..+ . ..|+|+|++++.++.+ +++|...+.... |.......
T Consensus 163 ~~~pG~~V~I~G~GGlGh~avQ~Aka~--------g-a~Via~~~~~~K~e~a----~~lGAd~~i~~~-~~~~~~~~-- 226 (339)
T COG1064 163 NVKPGKWVAVVGAGGLGHMAVQYAKAM--------G-AEVIAITRSEEKLELA----KKLGADHVINSS-DSDALEAV-- 226 (339)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc--------C-CeEEEEeCChHHHHHH----HHhCCcEEEEcC-CchhhHHh--
Confidence 58899999988877 445666777665 2 6899999999987665 567877554434 44333221
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
...||.||.-+| . .-+..++++|++||+||..
T Consensus 227 --------~~~~d~ii~tv~-~----------------------------~~~~~~l~~l~~~G~~v~v 258 (339)
T COG1064 227 --------KEIADAIIDTVG-P----------------------------ATLEPSLKALRRGGTLVLV 258 (339)
T ss_pred --------HhhCcEEEECCC-h----------------------------hhHHHHHHHHhcCCEEEEE
Confidence 123999998655 1 2477889999999999953
No 249
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.08 E-value=0.053 Score=58.14 Aligned_cols=77 Identities=17% Similarity=0.127 Sum_probs=55.8
Q ss_pred EEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCC
Q psy17365 181 VLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKV 260 (646)
Q Consensus 181 VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~ 260 (646)
|+|++||.||.+.-+-+. +--.|.|+|+++..++..+.|.. + .+...|...+....
T Consensus 1 vidLF~G~GG~~~Gl~~a---------G~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~--------- 56 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQA---------GFKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD--------- 56 (315)
T ss_pred CEEEecCccHHHHHHHHc---------CCeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh---------
Confidence 689999999999877543 23367899999999999888742 2 34456766543111
Q ss_pred CCCCCeeecCCCCCCCccccc
Q psy17365 261 PMKFDRVLCDVPCTGDGTMRK 281 (646)
Q Consensus 261 ~~~FD~IL~D~PCSG~G~lrk 281 (646)
...+|+++.-+||.+.-...+
T Consensus 57 ~~~~dvl~gg~PCq~fS~ag~ 77 (315)
T TIGR00675 57 IPDFDILLGGFPCQPFSIAGK 77 (315)
T ss_pred CCCcCEEEecCCCcccchhcc
Confidence 135899999999999876544
No 250
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=95.07 E-value=0.16 Score=48.24 Aligned_cols=117 Identities=10% Similarity=0.120 Sum_probs=68.2
Q ss_pred EEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccC
Q psy17365 211 LVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKW 289 (646)
Q Consensus 211 ~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w 289 (646)
+|+|+||....++..+++++..+..+ +.+++..-..+..... ...+|.|+.+ .|-+-.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~--------~~~v~~~iFN-----LGYLPg-------- 59 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIP--------EGPVDAAIFN-----LGYLPG-------- 59 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT----------S--EEEEEEE-----ESB-CT--------
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCc--------cCCcCEEEEE-----CCcCCC--------
Confidence 58999999999999999999988754 7777766555543221 1367777765 233211
Q ss_pred CcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCc--cccHHHHHHHHHHcc-CcEEEe
Q psy17365 290 TPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNP--LEDEAVIQRLIVETQ-GAVQLV 348 (646)
Q Consensus 290 ~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p--~ENE~VV~~~L~~~~-~~~elv 348 (646)
....+......=...|+.|+++|++||.|+...-.=++ .|..+.|.++++..+ ..|.+.
T Consensus 60 gDk~i~T~~~TTl~Al~~al~lL~~gG~i~iv~Y~GH~gG~eE~~av~~~~~~L~~~~~~V~ 121 (140)
T PF06962_consen 60 GDKSITTKPETTLKALEAALELLKPGGIITIVVYPGHPGGKEESEAVEEFLASLDQKEFNVL 121 (140)
T ss_dssp S-TTSB--HHHHHHHHHHHHHHEEEEEEEEEEE--STCHHHHHHHHHHHHHHTS-TTTEEEE
T ss_pred CCCCCCcCcHHHHHHHHHHHHhhccCCEEEEEEeCCCCCCHHHHHHHHHHHHhCCcceEEEE
Confidence 11223344455567899999999999998865333344 233344555666543 245444
No 251
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=95.02 E-value=0.033 Score=57.23 Aligned_cols=86 Identities=17% Similarity=0.083 Sum_probs=55.6
Q ss_pred ccccccCCCCCC--eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC---------CC
Q psy17365 168 IPPLLLDVQTHH--KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS---------PC 236 (646)
Q Consensus 168 l~~~~Ld~~pg~--~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~---------~n 236 (646)
..+.+..+++|. +|||..||-|+=+..+|.. .+.|+++|.|+--..++..-+++... .+
T Consensus 64 ~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~----------G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~r 133 (234)
T PF04445_consen 64 PLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL----------GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRR 133 (234)
T ss_dssp HHHHHTT-BTTB---EEETT-TTSHHHHHHHHH----------T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHH
T ss_pred HHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc----------CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhC
Confidence 344556777775 8999999999999988864 24799999999988888877665421 25
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCCCCeeecCCC
Q psy17365 237 AIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVP 272 (646)
Q Consensus 237 i~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~P 272 (646)
+.++++|+..+... ....||+|-+||-
T Consensus 134 i~l~~~d~~~~L~~---------~~~s~DVVY~DPM 160 (234)
T PF04445_consen 134 IQLIHGDALEYLRQ---------PDNSFDVVYFDPM 160 (234)
T ss_dssp EEEEES-CCCHCCC---------HSS--SEEEE--S
T ss_pred CEEEcCCHHHHHhh---------cCCCCCEEEECCC
Confidence 78999999876541 1257999999985
No 252
>KOG0024|consensus
Probab=94.89 E-value=0.11 Score=55.64 Aligned_cols=108 Identities=18% Similarity=0.231 Sum_probs=71.9
Q ss_pred cCCCCCCeEEEEcCCCchHHHHH-HHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQI-IEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~l-ae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
..+++|++||=++|||=|..+.+ |..+ +...|+..|+++.|++++++ +|...+....+.. ....+.
T Consensus 165 ~~vk~Gs~vLV~GAGPIGl~t~l~Aka~--------GA~~VVi~d~~~~Rle~Ak~----~Ga~~~~~~~~~~-~~~~~~ 231 (354)
T KOG0024|consen 165 AGVKKGSKVLVLGAGPIGLLTGLVAKAM--------GASDVVITDLVANRLELAKK----FGATVTDPSSHKS-SPQELA 231 (354)
T ss_pred cCcccCCeEEEECCcHHHHHHHHHHHHc--------CCCcEEEeecCHHHHHHHHH----hCCeEEeeccccc-cHHHHH
Confidence 35889999999999996655554 4444 47899999999999988754 7877554443332 111100
Q ss_pred --ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 252 --YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 252 --~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
.....| ...||..+- |||... -++.|+..++.||++|..-|-
T Consensus 232 ~~v~~~~g---~~~~d~~~d---CsG~~~-------------------------~~~aai~a~r~gGt~vlvg~g 275 (354)
T KOG0024|consen 232 ELVEKALG---KKQPDVTFD---CSGAEV-------------------------TIRAAIKATRSGGTVVLVGMG 275 (354)
T ss_pred HHHHhhcc---ccCCCeEEE---ccCchH-------------------------HHHHHHHHhccCCEEEEeccC
Confidence 001112 134887763 888652 467788999999998876543
No 253
>KOG1227|consensus
Probab=94.76 E-value=0.015 Score=61.14 Aligned_cols=74 Identities=20% Similarity=0.110 Sum_probs=55.5
Q ss_pred CCCeEEEEcCCCchHHH-HHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCCCccccccC
Q psy17365 177 THHKVLDMCAAPGSKTA-QIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASVMPNVLYTD 254 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~-~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~~p~~~~~~ 254 (646)
.|+.|.||.||-|..|. .+... ++..|+|+|.++..++.|+++++.+++.. ..++.+|-+.. .
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~a---------gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~-~----- 258 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTA---------GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP-K----- 258 (351)
T ss_pred ccchhhhhhcccceEEeehhhcc---------CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc-C-----
Confidence 36899999999999998 55433 57799999999999999999999887643 34555554432 1
Q ss_pred CCCCCCCCCCCeeecC
Q psy17365 255 ADGNKVPMKFDRVLCD 270 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D 270 (646)
.....|+|.+.
T Consensus 259 -----~~~~AdrVnLG 269 (351)
T KOG1227|consen 259 -----PRLRADRVNLG 269 (351)
T ss_pred -----ccccchheeec
Confidence 12468888874
No 254
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=94.60 E-value=0.25 Score=51.95 Aligned_cols=119 Identities=18% Similarity=0.162 Sum_probs=64.8
Q ss_pred CeEEEEcCCCch----HHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-----cCCCC----eEEEec-CC
Q psy17365 179 HKVLDMCAAPGS----KTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR-----LNSPC----AIITNH-DA 244 (646)
Q Consensus 179 ~~VLDmCAaPGg----KT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~r-----lg~~n----i~v~~~-Da 244 (646)
-+||-++|++|- .+..|.+.++... ...-.|+|.|+|.+.++.++.-+=. -+++. --+... |.
T Consensus 98 irIWSaaCStGEEpYSiAm~l~e~~~~~~---~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~ 174 (268)
T COG1352 98 IRIWSAACSTGEEPYSLAMLLLEALGKLA---GFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDG 174 (268)
T ss_pred eEEEecCcCCCccHHHHHHHHHHHhcccc---CCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCC
Confidence 389999999995 4444445443100 0245899999999988776542100 01110 001111 11
Q ss_pred --------CCCccccccCCCCCC-CCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccC
Q psy17365 245 --------SVMPNVLYTDADGNK-VPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVG 315 (646)
Q Consensus 245 --------~~~p~~~~~~~~g~~-~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpG 315 (646)
...-.+...+.-... ....||.|+| ||--+. --...|.+|+.+-...|+||
T Consensus 175 ~y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfC-----------RNVLIY---------Fd~~~q~~il~~f~~~L~~g 234 (268)
T COG1352 175 SYRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFC-----------RNVLIY---------FDEETQERILRRFADSLKPG 234 (268)
T ss_pred cEEEChHHhcccEEeecCCCCCccccCCCCEEEE-----------cceEEe---------eCHHHHHHHHHHHHHHhCCC
Confidence 000000000000111 3467999998 222221 12468999999999999999
Q ss_pred CeEEE
Q psy17365 316 GKIAY 320 (646)
Q Consensus 316 G~LVY 320 (646)
|.|+.
T Consensus 235 G~Lfl 239 (268)
T COG1352 235 GLLFL 239 (268)
T ss_pred CEEEE
Confidence 99985
No 255
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=94.35 E-value=0.24 Score=53.63 Aligned_cols=134 Identities=22% Similarity=0.223 Sum_probs=84.4
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCC-CcEEEEEcCCHHHHHHHHHHHH--HcC-----CCCeEEEecCCC
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVP-SGLVVANDVDNNRCYMLVHQAK--RLN-----SPCAIITNHDAS 245 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~-~G~VvA~Dis~~Rl~~L~~n~~--rlg-----~~ni~v~~~Da~ 245 (646)
.++.-.+||=++-|-|--.-++... | -+.|+-+|.|++.++...|+.- ..+ -+.+.+++.||.
T Consensus 286 ~~~~a~~vLvlGGGDGLAlRellky---------P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf 356 (508)
T COG4262 286 SVRGARSVLVLGGGDGLALRELLKY---------PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAF 356 (508)
T ss_pred cccccceEEEEcCCchHHHHHHHhC---------CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHH
Confidence 3456678999998888655555433 4 6889999999999999997742 222 246889999998
Q ss_pred CCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC-
Q psy17365 246 VMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS- 324 (646)
Q Consensus 246 ~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS- 324 (646)
++.... ...||.|++|-| +|+. +.-+.-.+. +.-.-+.+.|+++|.+|.-.-|
T Consensus 357 ~wlr~a---------~~~fD~vIVDl~---------DP~t-----ps~~rlYS~---eFY~ll~~~l~e~Gl~VvQags~ 410 (508)
T COG4262 357 QWLRTA---------ADMFDVVIVDLP---------DPST-----PSIGRLYSV---EFYRLLSRHLAETGLMVVQAGSP 410 (508)
T ss_pred HHHHhh---------cccccEEEEeCC---------CCCC-----cchhhhhhH---HHHHHHHHhcCcCceEEEecCCC
Confidence 765321 258999999988 4442 111111111 2334455679999998853322
Q ss_pred CCccccHHHHHHHHHHcc
Q psy17365 325 LNPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 325 l~p~ENE~VV~~~L~~~~ 342 (646)
+..-+-=.-|.+-+++.+
T Consensus 411 y~tp~vfw~i~aTik~AG 428 (508)
T COG4262 411 YFTPRVFWRIDATIKSAG 428 (508)
T ss_pred ccCCceeeeehhHHHhCc
Confidence 333333333444555554
No 256
>KOG3115|consensus
Probab=94.33 E-value=0.11 Score=52.01 Aligned_cols=114 Identities=14% Similarity=0.207 Sum_probs=75.8
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-------CCCeEEEecCCCCC-ccc
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-------SPCAIITNHDASVM-PNV 250 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-------~~ni~v~~~Da~~~-p~~ 250 (646)
-.+.|++||=||....|+.+. |.-.|++.||.-+-.+..++.+..++ .+|+.+....+..+ |++
T Consensus 62 vefaDIGCGyGGLlv~Lsp~f--------PdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~ 133 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKF--------PDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNF 133 (249)
T ss_pred ceEEeeccCccchhhhccccC--------ccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccch
Confidence 358899999999999888765 68899999999888888888877766 67888887777665 333
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
+. .+..+.++.=-| +|.-|.+-+...+ .+..++.+-.-+|++||.+.++|
T Consensus 134 f~--------kgqLskmff~fp---------dpHfk~~khk~ri-----i~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 134 FE--------KGQLSKMFFLFP---------DPHFKARKHKWRI-----ITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred hh--------hcccccceeecC---------ChhHhhhhcccee-----echhHHHHHHhhhhcCceEEEEe
Confidence 21 112222222112 4443332222222 23356777888999999988776
No 257
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=94.24 E-value=0.19 Score=53.46 Aligned_cols=154 Identities=12% Similarity=0.170 Sum_probs=82.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCC-eEEEecCC-C-CCcccccc
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL-NSPC-AIITNHDA-S-VMPNVLYT 253 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl-g~~n-i~v~~~Da-~-~~p~~~~~ 253 (646)
.-++||+|+|.-..--.|+..+. .-.++|.|+|+..++.+++|++++ ++.+ |.+..... . -|..+.
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~--------~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~-- 172 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLY--------GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGII-- 172 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH----------EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTST--
T ss_pred ceEeecCCccHHHHHHHHhhhhc--------CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhh--
Confidence 55899999998877666665553 468999999999999999999999 7654 65554322 1 122111
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcc------cccCccccc----cCCcc-----hhh------hhHHHHHHHHHHHHHhh
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGT------MRKNPDIWT----KWTPS-----NGN------NLHGIQYRIVKRGVEML 312 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~------lrk~pd~~~----~w~~~-----~~~------~l~~lQ~~IL~~A~~lL 312 (646)
.....||..+|+||--.+.- -||.-++-. ...+. ... +=...-.+++.+...+-
T Consensus 173 -----~~~e~~dftmCNPPFy~s~~e~~~~~~~k~~nl~~~~~~~~~p~~~~~G~~~El~~~GGEv~FV~rMI~ES~~~~ 247 (299)
T PF05971_consen 173 -----QPNERFDFTMCNPPFYSSQEEAEAGTERKWKNLGRPNKKRSPPKLNFTGQSNELWCEGGEVAFVKRMIKESLQLK 247 (299)
T ss_dssp -----T--S-EEEEEE-----SS--------------------------------TTTTHHHHTHHHHHHHHHHHHHHHG
T ss_pred -----cccceeeEEecCCccccChhhhcccccccccccccccccccCccccCCCCcceEEcCCccHHHHHHHHHHHHHhC
Confidence 11358999999999755432 111100000 00000 000 11234457777777653
Q ss_pred ccCCeEEEEcCCCCccccHHHHHHHHHHccC-cEEEee
Q psy17365 313 AVGGKIAYSTCSLNPLEDEAVIQRLIVETQG-AVQLVD 349 (646)
Q Consensus 313 KpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~-~~elv~ 349 (646)
. ....|| |=+...+|-.-+...|++.+. .+..++
T Consensus 248 ~--~v~WfT-smvgKkssL~~l~~~L~~~~~~~~~~~e 282 (299)
T PF05971_consen 248 D--QVRWFT-SMVGKKSSLKPLKKELKKLGATNYKVTE 282 (299)
T ss_dssp G--GEEEEE-EEESSGGGHHHHHHHHHHTT-SEEEEEE
T ss_pred C--CcEEEe-ecccCcccHHHHHHHHHhcCCceEEEEE
Confidence 3 456665 688999999999999988753 244444
No 258
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=94.13 E-value=0.19 Score=50.34 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=60.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhc-CCCCCCCcEEEEEcCCHHHHHHHHHHH--------------HHc-----C----
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAA-DSNPVPSGLVVANDVDNNRCYMLVHQA--------------KRL-----N---- 233 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~-~~~~~~~G~VvA~Dis~~Rl~~L~~n~--------------~rl-----g---- 233 (646)
--+||.++|++|-=+--||-++... .....-.-.|+|.|+|...++.+++-+ ++. |
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~~ 111 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGYR 111 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCTT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCcee
Confidence 3589999999996443333333210 010001458999999999988765421 111 0
Q ss_pred -----CCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHH
Q psy17365 234 -----SPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRG 308 (646)
Q Consensus 234 -----~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A 308 (646)
-.+|.+..+|.... ......||.|+|= |--+ .. -...|.+++++.
T Consensus 112 v~~~lr~~V~F~~~NL~~~----------~~~~~~fD~I~CR-----------NVlI--YF-------~~~~~~~vl~~l 161 (196)
T PF01739_consen 112 VKPELRKMVRFRRHNLLDP----------DPPFGRFDLIFCR-----------NVLI--YF-------DPETQQRVLRRL 161 (196)
T ss_dssp E-HHHHTTEEEEE--TT-S----------------EEEEEE------------SSGG--GS--------HHHHHHHHHHH
T ss_pred EChHHcCceEEEecccCCC----------CcccCCccEEEec-----------CEEE--Ee-------CHHHHHHHHHHH
Confidence 01244444444331 1224679999982 2111 11 235788999999
Q ss_pred HHhhccCCeEEEEc
Q psy17365 309 VEMLAVGGKIAYST 322 (646)
Q Consensus 309 ~~lLKpGG~LVYST 322 (646)
.+.|+|||.|+...
T Consensus 162 ~~~L~pgG~L~lG~ 175 (196)
T PF01739_consen 162 HRSLKPGGYLFLGH 175 (196)
T ss_dssp GGGEEEEEEEEE-T
T ss_pred HHHcCCCCEEEEec
Confidence 99999999999764
No 259
>KOG2078|consensus
Probab=94.08 E-value=0.024 Score=62.16 Aligned_cols=64 Identities=22% Similarity=0.112 Sum_probs=54.9
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--CeEEEecCCCCCc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP--CAIITNHDASVMP 248 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~--ni~v~~~Da~~~p 248 (646)
.+||+.|-|+|||-|-.++.++.. ..+|+|||.++..++.|..|++...+. +|.+.|+||..|.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK----------~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Fl 312 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKK----------GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFL 312 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhc----------CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHh
Confidence 368999999999999988877653 368999999999999999999876653 5899999998775
No 260
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=93.94 E-value=0.18 Score=52.61 Aligned_cols=141 Identities=14% Similarity=0.140 Sum_probs=75.1
Q ss_pred CCCeEEEEcCCCchHHHH-HHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC--------------------
Q psy17365 177 THHKVLDMCAAPGSKTAQ-IIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-------------------- 235 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~-lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-------------------- 235 (646)
.|.++||++||| |.+ ++.+.. ---.|+..|..+.-.+.|++-++.-+.-
T Consensus 56 ~g~~llDiGsGP---tiy~~lsa~~-------~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~ 125 (256)
T PF01234_consen 56 KGETLLDIGSGP---TIYQLLSACE-------WFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWE 125 (256)
T ss_dssp -EEEEEEES-TT-----GGGTTGGG-------TEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHH
T ss_pred CCCEEEEeCCCc---HHHhhhhHHH-------hhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhh
Confidence 578999999999 333 222211 1346999999988777665554332210
Q ss_pred --------Ce-EEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHH
Q psy17365 236 --------CA-IITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVK 306 (646)
Q Consensus 236 --------ni-~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~ 306 (646)
.| .|+..|.+..+.+.. +...+.+||.|+. -+-.+.+..-.....+.|+
T Consensus 126 e~e~~lR~~Vk~Vv~cDV~~~~pl~~----~~~~p~~~D~v~s------------------~fcLE~a~~d~~~y~~al~ 183 (256)
T PF01234_consen 126 EKEEKLRRAVKQVVPCDVTQPNPLDP----PVVLPPKFDCVIS------------------SFCLESACKDLDEYRRALR 183 (256)
T ss_dssp HHHHHHHHHEEEEEE--TTSSSTTTT----S-SS-SSEEEEEE------------------ESSHHHH-SSHHHHHHHHH
T ss_pred hHHHHHHHhhceEEEeeccCCCCCCc----cccCccchhhhhh------------------hHHHHHHcCCHHHHHHHHH
Confidence 01 134444443322110 0001124666653 1112222233445678899
Q ss_pred HHHHhhccCCeEEEEcCC------C------CccccHHHHHHHHHHccCcEEEeecc
Q psy17365 307 RGVEMLAVGGKIAYSTCS------L------NPLEDEAVIQRLIVETQGAVQLVDVS 351 (646)
Q Consensus 307 ~A~~lLKpGG~LVYSTCS------l------~p~ENE~VV~~~L~~~~~~~elv~~~ 351 (646)
+...+|||||.||....- + .--=||+.|.++|++.+ +.+++..
T Consensus 184 ni~~lLkpGG~Lil~~~l~~t~Y~vG~~~F~~l~l~ee~v~~al~~aG--~~i~~~~ 238 (256)
T PF01234_consen 184 NISSLLKPGGHLILAGVLGSTYYMVGGHKFPCLPLNEEFVREALEEAG--FDIEDLE 238 (256)
T ss_dssp HHHTTEEEEEEEEEEEESS-SEEEETTEEEE---B-HHHHHHHHHHTT--EEEEEEE
T ss_pred HHHHHcCCCcEEEEEEEcCceeEEECCEecccccCCHHHHHHHHHHcC--CEEEecc
Confidence 999999999999965321 1 11137999999999886 6666654
No 261
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.89 E-value=0.16 Score=54.84 Aligned_cols=83 Identities=19% Similarity=0.173 Sum_probs=59.0
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGN 258 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~ 258 (646)
.+|+|+|||-||...-+.+. +--.+.|+|+++.+++..++|... ..++..|...+.....
T Consensus 4 ~~~idLFsG~GG~~lGf~~a---------gf~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~~------ 63 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEA---------GFEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEAL------ 63 (328)
T ss_pred ceEEeeccCCchHHHHHHhc---------CCeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhhc------
Confidence 47999999999998665443 234799999999999998887543 3455566554322111
Q ss_pred CCCCCCCeeecCCCCCCCcccccC
Q psy17365 259 KVPMKFDRVLCDVPCTGDGTMRKN 282 (646)
Q Consensus 259 ~~~~~FD~IL~D~PCSG~G~lrk~ 282 (646)
....+|.|+.-+||-+.-+..+.
T Consensus 64 -~~~~~DvligGpPCQ~FS~aG~r 86 (328)
T COG0270 64 -RKSDVDVLIGGPPCQDFSIAGKR 86 (328)
T ss_pred -cccCCCEEEeCCCCcchhhcCcc
Confidence 00169999999999998776554
No 262
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=93.79 E-value=0.1 Score=52.66 Aligned_cols=160 Identities=14% Similarity=0.118 Sum_probs=77.8
Q ss_pred cccEEEecccccccc--cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q psy17365 156 TGHISRQEAVSMIPP--LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN 233 (646)
Q Consensus 156 ~G~i~~Qd~~Sml~~--~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg 233 (646)
.|...+|.+--|+.- ++-+++|. .|+.+|.+-||-+...|.++..- + +.|.|+++|++...+........-+
T Consensus 10 ~G~pi~q~P~Dm~~~qeli~~~kPd-~IIE~Gi~~GGSli~~A~ml~~~-~---~~~~VigiDIdir~~~~~a~e~hp~- 83 (206)
T PF04989_consen 10 LGRPIIQYPQDMVAYQELIWELKPD-LIIETGIAHGGSLIFWASMLELL-G---GKGKVIGIDIDIRPHNRKAIESHPM- 83 (206)
T ss_dssp TTEEESS-HHHHHHHHHHHHHH--S-EEEEE--TTSHHHHHHHHHHHHT-T------EEEEEES-GTT--S-GGGG----
T ss_pred CCeehhcCHHHHHHHHHHHHHhCCC-eEEEEecCCCchHHHHHHHHHHh-C---CCceEEEEeCCcchhchHHHhhccc-
Confidence 344455544443322 23355664 89999999999998888876432 1 5799999999765433221111112
Q ss_pred CCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhc
Q psy17365 234 SPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLA 313 (646)
Q Consensus 234 ~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLK 313 (646)
.+.|.++.+|......+.. ............|+.|+--+- .-..+.|+.-..++.
T Consensus 84 ~~rI~~i~Gds~d~~~~~~--v~~~~~~~~~vlVilDs~H~~-----------------------~hvl~eL~~y~plv~ 138 (206)
T PF04989_consen 84 SPRITFIQGDSIDPEIVDQ--VRELASPPHPVLVILDSSHTH-----------------------EHVLAELEAYAPLVS 138 (206)
T ss_dssp -TTEEEEES-SSSTHHHHT--SGSS----SSEEEEESS---------------------------SSHHHHHHHHHHT--
T ss_pred cCceEEEECCCCCHHHHHH--HHHhhccCCceEEEECCCccH-----------------------HHHHHHHHHhCccCC
Confidence 2679999999876432211 000011234457777764221 123456777889999
Q ss_pred cCCeEEEE-c-CCCCccc------------cHHHHHHHHHHccCcEEE
Q psy17365 314 VGGKIAYS-T-CSLNPLE------------DEAVIQRLIVETQGAVQL 347 (646)
Q Consensus 314 pGG~LVYS-T-CSl~p~E------------NE~VV~~~L~~~~~~~el 347 (646)
+|+++|.- | |+..|.. --..|.++|++++. |++
T Consensus 139 ~G~Y~IVeDt~~~~~~~~~~~~~~w~~g~~p~~av~~fL~~~~~-f~i 185 (206)
T PF04989_consen 139 PGSYLIVEDTIIEDWPESWFPDRPWGPGNNPKTAVKEFLAEHPD-FEI 185 (206)
T ss_dssp TT-EEEETSHHHHHHHHS-------------HHHHHHHHHTTTT-EEE
T ss_pred CCCEEEEEeccccccccccccccchhhhhHHHHHHHHHHHHCCC-cEe
Confidence 99998731 1 1122222 13457778888775 554
No 263
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=93.65 E-value=0.19 Score=47.29 Aligned_cols=55 Identities=15% Similarity=0.220 Sum_probs=46.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN 233 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg 233 (646)
..+...|+|+|||-|..+..++.++... .+.-.|+|+|.++..++.+....++++
T Consensus 23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~----~~~~~v~~iD~~~~~~~~a~~~~~~~~ 77 (141)
T PF13679_consen 23 SKRCITVVDLGSGKGYLSRALAHLLCNS----SPNLRVLGIDCNESLVESAQKRAQKLG 77 (141)
T ss_pred cCCCCEEEEeCCChhHHHHHHHHHHHhc----CCCCeEEEEECCcHHHHHHHHHHHHhc
Confidence 3677899999999999999999966421 146689999999999999988888877
No 264
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.57 E-value=0.27 Score=57.95 Aligned_cols=129 Identities=14% Similarity=0.118 Sum_probs=80.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhh-c-CCC--CCCCcEEEEEcCCHHHHHHHHHHH----------HH---------cC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHA-A-DSN--PVPSGLVVANDVDNNRCYMLVHQA----------KR---------LN 233 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~-~-~~~--~~~~G~VvA~Dis~~Rl~~L~~n~----------~r---------lg 233 (646)
+.-+|||+|=|.|--++.+.+.... . .+. ....-.++++|.++-..+.+.+-. +. .|
T Consensus 57 ~~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 136 (662)
T PRK01747 57 RRFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPG 136 (662)
T ss_pred CcEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCC
Confidence 3468999999999988888876621 0 010 001347899998763222222111 11 12
Q ss_pred CC---------CeEEEecCCCCCccccccCCCCCCCCCCCCeeecCC--CCCCCcccccCccccccCCcchhhhhHHHHH
Q psy17365 234 SP---------CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDV--PCTGDGTMRKNPDIWTKWTPSNGNNLHGIQY 302 (646)
Q Consensus 234 ~~---------ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~--PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~ 302 (646)
+. ++.+..+|+....... ...||.|++|+ | .+||++|..
T Consensus 137 ~~~~~~~~~~~~l~l~~gd~~~~~~~~---------~~~~d~~~lD~FsP-------~~np~~W~~-------------- 186 (662)
T PRK01747 137 CHRLLFDDGRVTLDLWFGDANELLPQL---------DARADAWFLDGFAP-------AKNPDMWSP-------------- 186 (662)
T ss_pred ceEEEecCCcEEEEEEecCHHHHHHhc---------cccccEEEeCCCCC-------ccChhhccH--------------
Confidence 21 2334556665422110 13599999995 5 689998764
Q ss_pred HHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHcc
Q psy17365 303 RIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 303 ~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~ 342 (646)
+++....+++++||+++--|+ -..|...|...+
T Consensus 187 ~~~~~l~~~~~~~~~~~t~t~-------a~~vr~~l~~~G 219 (662)
T PRK01747 187 NLFNALARLARPGATLATFTS-------AGFVRRGLQEAG 219 (662)
T ss_pred HHHHHHHHHhCCCCEEEEeeh-------HHHHHHHHHHcC
Confidence 688899999999999983333 458888898886
No 265
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=93.42 E-value=1.1 Score=38.82 Aligned_cols=109 Identities=19% Similarity=0.209 Sum_probs=65.9
Q ss_pred EEEEcCCCchHHHHHHHHhhhcCCCCCCC-cEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCC--CccccccCCCC
Q psy17365 181 VLDMCAAPGSKTAQIIEMIHAADSNPVPS-GLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASV--MPNVLYTDADG 257 (646)
Q Consensus 181 VLDmCAaPGgKT~~lae~l~~~~~~~~~~-G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~--~p~~~~~~~~g 257 (646)
|+|++||+|..+ .++... +. ..++++|.+...+..........+...+.+...|... ++.. .
T Consensus 52 ~ld~~~g~g~~~-~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~- 116 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLG--------GRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFE-----D- 116 (257)
T ss_pred eEEecCCcCHHH-HHHHhC--------CCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCC-----C-
Confidence 999999999877 444332 23 3788899999988874444333221114566666543 2210 0
Q ss_pred CCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcccc
Q psy17365 258 NKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~EN 330 (646)
...||.+.....+ .|.. ....+..+.+.++++|.+++++........
T Consensus 117 ---~~~~d~~~~~~~~--------------~~~~---------~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~ 163 (257)
T COG0500 117 ---SASFDLVISLLVL--------------HLLP---------PAKALRELLRVLKPGGRLVLSDLLRDGLLE 163 (257)
T ss_pred ---CCceeEEeeeeeh--------------hcCC---------HHHHHHHHHHhcCCCcEEEEEeccCCCCcc
Confidence 0357877322110 0000 346788899999999999988777555443
No 266
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=93.42 E-value=0.14 Score=51.99 Aligned_cols=105 Identities=14% Similarity=0.041 Sum_probs=63.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.-.++||.+||-|-.|-+++-- ---.|-.+|..++-++.+++.+..-+.....+.+.-.+.|..
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~---------~f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P------- 118 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLP---------VFDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP------- 118 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCC---------C-SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----------
T ss_pred CcceEEecccccchhHHHHHHH---------hcCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC-------
Confidence 4568999999999999877522 134799999999998888765433111223455555555421
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
...+||.|-+ .|-...+.. .--.+.|.++.+.|+|||.||.
T Consensus 119 ---~~~~YDlIW~------------------QW~lghLTD--~dlv~fL~RCk~~L~~~G~Ivv 159 (218)
T PF05891_consen 119 ---EEGKYDLIWI------------------QWCLGHLTD--EDLVAFLKRCKQALKPNGVIVV 159 (218)
T ss_dssp ----TT-EEEEEE------------------ES-GGGS-H--HHHHHHHHHHHHHEEEEEEEEE
T ss_pred ---CCCcEeEEEe------------------hHhhccCCH--HHHHHHHHHHHHhCcCCcEEEE
Confidence 1257998865 675332221 1124789999999999999884
No 267
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=93.39 E-value=0.25 Score=49.92 Aligned_cols=114 Identities=13% Similarity=0.150 Sum_probs=63.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
...++..|-|||||-+-. |+.+. ..-.|...|.-.. |-.|+..|....|-.
T Consensus 69 ~~~~~~viaD~GCGdA~l----a~~~~-------~~~~V~SfDLva~---------------n~~Vtacdia~vPL~--- 119 (219)
T PF05148_consen 69 KRPKSLVIADFGCGDAKL----AKAVP-------NKHKVHSFDLVAP---------------NPRVTACDIANVPLE--- 119 (219)
T ss_dssp TS-TTS-EEEES-TT-HH----HHH---------S---EEEEESS-S---------------STTEEES-TTS-S-----
T ss_pred hcCCCEEEEECCCchHHH----HHhcc-------cCceEEEeeccCC---------------CCCEEEecCccCcCC---
Confidence 333457899999998754 44442 2347999997542 234677888877631
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHH
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAV 333 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~V 333 (646)
....|++++-- |=.|| .| ...|.+|.++||+||.|..+-- -+..+|...
T Consensus 120 -------~~svDv~VfcL--SLMGT---------n~------------~~fi~EA~RvLK~~G~L~IAEV-~SRf~~~~~ 168 (219)
T PF05148_consen 120 -------DESVDVAVFCL--SLMGT---------NW------------PDFIREANRVLKPGGILKIAEV-KSRFENVKQ 168 (219)
T ss_dssp -------TT-EEEEEEES-----SS----------H------------HHHHHHHHHHEEEEEEEEEEEE-GGG-S-HHH
T ss_pred -------CCceeEEEEEh--hhhCC---------Cc------------HHHHHHHHheeccCcEEEEEEe-cccCcCHHH
Confidence 25689888732 33344 22 3679999999999998875532 233456666
Q ss_pred HHHHHHHccCcEEEee
Q psy17365 334 IQRLIVETQGAVQLVD 349 (646)
Q Consensus 334 V~~~L~~~~~~~elv~ 349 (646)
..+.++..| |++..
T Consensus 169 F~~~~~~~G--F~~~~ 182 (219)
T PF05148_consen 169 FIKALKKLG--FKLKS 182 (219)
T ss_dssp HHHHHHCTT--EEEEE
T ss_pred HHHHHHHCC--CeEEe
Confidence 667777775 66654
No 268
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=93.35 E-value=0.12 Score=58.27 Aligned_cols=104 Identities=21% Similarity=0.247 Sum_probs=61.4
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
.+||++||.|++++.|.+.- .-+-.+..+|.++.-+..+. +-|++.+.-+-+ ...+|-
T Consensus 120 ~~LDvGcG~aSF~a~l~~r~-------V~t~s~a~~d~~~~qvqfal----eRGvpa~~~~~~-s~rLPf---------- 177 (506)
T PF03141_consen 120 TALDVGCGVASFGAYLLERN-------VTTMSFAPNDEHEAQVQFAL----ERGVPAMIGVLG-SQRLPF---------- 177 (506)
T ss_pred EEEeccceeehhHHHHhhCC-------ceEEEcccccCCchhhhhhh----hcCcchhhhhhc-cccccC----------
Confidence 69999999999999887651 00111222355444433332 235654322111 122331
Q ss_pred CCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCC
Q psy17365 260 VPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLN 326 (646)
Q Consensus 260 ~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~ 326 (646)
....||.|= ||...+ .|.+.+. -+|-..-++|+|||++|+|.--++
T Consensus 178 p~~~fDmvH----csrc~i---------~W~~~~g--------~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 178 PSNAFDMVH----CSRCLI---------PWHPNDG--------FLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred Cccchhhhh----cccccc---------cchhccc--------ceeehhhhhhccCceEEecCCccc
Confidence 125688775 555443 5666554 257777899999999999987777
No 269
>PRK10458 DNA cytosine methylase; Provisional
Probab=92.39 E-value=0.39 Score=54.38 Aligned_cols=94 Identities=12% Similarity=0.085 Sum_probs=59.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
...-+++|+|||.||.+.-+-.. +--.|.|+|+++..++....|.. +.+...+.+.|...+........
T Consensus 86 ~~~~~~iDLFsGiGGl~lGfe~a---------G~~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i~~~~~~~~ 154 (467)
T PRK10458 86 HYAFRFIDLFAGIGGIRRGFEAI---------GGQCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDITLSHKEGV 154 (467)
T ss_pred CCCceEEEeCcCccHHHHHHHHc---------CCEEEEEEechHHHHHHHHHHcC--CCCccceeccChhhCcccccccc
Confidence 34568999999999998876432 22368999999999998888732 12233445566655431100000
Q ss_pred ------C-CCCCCCCCCeeecCCCCCCCcccc
Q psy17365 256 ------D-GNKVPMKFDRVLCDVPCTGDGTMR 280 (646)
Q Consensus 256 ------~-g~~~~~~FD~IL~D~PCSG~G~lr 280 (646)
. .......+|+++.-+||-+.-...
T Consensus 155 ~~~~~~~~~~~~~p~~DvL~gGpPCQ~FS~AG 186 (467)
T PRK10458 155 SDEEAAEHIRQHIPDHDVLLAGFPCQPFSLAG 186 (467)
T ss_pred chhhhhhhhhccCCCCCEEEEcCCCCccchhc
Confidence 0 000113589999999999886654
No 270
>PHA01634 hypothetical protein
Probab=92.33 E-value=0.59 Score=43.72 Aligned_cols=76 Identities=14% Similarity=0.086 Sum_probs=53.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+|+|++|+-|.-++.-+-. ++..|+|.|.+++-.+.+++|++-+.+-.-.+... ..+
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~---------GAK~Vva~E~~~kl~k~~een~k~nnI~DK~v~~~---eW~-------- 87 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLR---------GASFVVQYEKEEKLRKKWEEVCAYFNICDKAVMKG---EWN-------- 87 (156)
T ss_pred cCCEEEEecCCccchhhHHhhc---------CccEEEEeccCHHHHHHHHHHhhhheeeeceeecc---ccc--------
Confidence 3679999999999988776533 57899999999999999999888764321111111 122
Q ss_pred CCCCCCCCCeeecCCCCCCC
Q psy17365 257 GNKVPMKFDRVLCDVPCTGD 276 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~ 276 (646)
+ ..+.||....| |-|.
T Consensus 88 ~--~Y~~~Di~~iD--CeGC 103 (156)
T PHA01634 88 G--EYEDVDIFVMD--CEGC 103 (156)
T ss_pred c--cCCCcceEEEE--ccch
Confidence 1 23679998888 5554
No 271
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=92.22 E-value=2.3 Score=42.67 Aligned_cols=40 Identities=20% Similarity=0.208 Sum_probs=34.8
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcC
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDV 217 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Di 217 (646)
.+..++||+.|+|+--|.|.+|..++-.++ ++|.|++.=.
T Consensus 42 ~FaGlkpg~tVid~~PGgGy~TrI~s~~vg-------p~G~Vy~~~p 81 (238)
T COG4798 42 AFAGLKPGATVIDLIPGGGYFTRIFSPAVG-------PKGKVYAYVP 81 (238)
T ss_pred EEeccCCCCEEEEEecCCccHhhhhchhcC-------CceeEEEecc
Confidence 356799999999999999999999998886 7999988743
No 272
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=91.77 E-value=0.94 Score=47.82 Aligned_cols=106 Identities=15% Similarity=0.139 Sum_probs=62.4
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHH-HcCC-CCeEEEecCCCCCccccccCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAK-RLNS-PCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~-rlg~-~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+|+=+|+||=-.|+.+....+. ....|+.+|+|+.+..+.++-++ .+|+ ..+.+..+|+...+.
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~------~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~------- 188 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHG------PGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTY------- 188 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HT------T--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-G-------
T ss_pred ceEEEEcCCCcchHHHHHHHHhC------CCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhcccc-------
Confidence 49999999998888776654331 24578999999999999988777 5554 357888889865432
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
....||.|++-+- -|+ .+. --.+||.+..+.+++|..|+|=
T Consensus 189 ---dl~~~DvV~lAal---Vg~-~~e-----------------~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 189 ---DLKEYDVVFLAAL---VGM-DAE-----------------PKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp ---G----SEEEE-TT----S----------------------SHHHHHHHHHHHS-TTSEEEEE
T ss_pred ---ccccCCEEEEhhh---ccc-ccc-----------------hHHHHHHHHHhhCCCCcEEEEe
Confidence 1247999998542 110 000 1137899999999999998863
No 273
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=91.31 E-value=0.57 Score=49.17 Aligned_cols=153 Identities=20% Similarity=0.180 Sum_probs=95.9
Q ss_pred ccccccEEEecccccccccccCC---CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy17365 153 ENATGHISRQEAVSMIPPLLLDV---QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQA 229 (646)
Q Consensus 153 ~~~~G~i~~Qd~~Sml~~~~Ld~---~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~ 229 (646)
++.+|+++..-..|-+. ++.- -.|..|+=|+ ---.|. ||-++. . -.-+|..+|+|..-++...+-+
T Consensus 127 ~yDQgfvTpEttv~Rv~--lm~~RGDL~gK~I~vvG--DDDLts-ia~aLt-~-----mpk~iaVvDIDERli~fi~k~a 195 (354)
T COG1568 127 QYDQGFVTPETTVSRVA--LMYSRGDLEGKEIFVVG--DDDLTS-IALALT-G-----MPKRIAVVDIDERLIKFIEKVA 195 (354)
T ss_pred hcccccccccceeeeee--eeccccCcCCCeEEEEc--CchhhH-HHHHhc-C-----CCceEEEEechHHHHHHHHHHH
Confidence 45677777666555433 2221 2356688776 333343 333332 1 2347888999999999999999
Q ss_pred HHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHH
Q psy17365 230 KRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGV 309 (646)
Q Consensus 230 ~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~ 309 (646)
+.+|..|+.++.+|.++.... ....+||.++.|||-+-.| -+..|.++.
T Consensus 196 ee~g~~~ie~~~~Dlr~plpe--------~~~~kFDvfiTDPpeTi~a-----------------------lk~FlgRGI 244 (354)
T COG1568 196 EELGYNNIEAFVFDLRNPLPE--------DLKRKFDVFITDPPETIKA-----------------------LKLFLGRGI 244 (354)
T ss_pred HHhCccchhheeehhcccChH--------HHHhhCCeeecCchhhHHH-----------------------HHHHHhccH
Confidence 999999999999998874221 1136899999999954433 135688899
Q ss_pred HhhccC---CeEEEEcCCCCccccHHHHHH-HHHHccCcEEEeec
Q psy17365 310 EMLAVG---GKIAYSTCSLNPLEDEAVIQR-LIVETQGAVQLVDV 350 (646)
Q Consensus 310 ~lLKpG---G~LVYSTCSl~p~ENE~VV~~-~L~~~~~~~elv~~ 350 (646)
..||-- |+. |-|-+-.+..-=.-|++ ++.+.+ |.+-|+
T Consensus 245 ~tLkg~~~aGyf-giT~ressidkW~eiQr~lIn~~g--vVITdi 286 (354)
T COG1568 245 ATLKGEGCAGYF-GITRRESSIDKWREIQRILINEMG--VVITDI 286 (354)
T ss_pred HHhcCCCccceE-eeeeccccHHHHHHHHHHHHHhcC--eeeHhh
Confidence 999876 433 33344444444445666 344443 444443
No 274
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=91.17 E-value=0.99 Score=43.98 Aligned_cols=123 Identities=17% Similarity=0.165 Sum_probs=70.5
Q ss_pred cccccccccC-CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecC
Q psy17365 165 VSMIPPLLLD-VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHD 243 (646)
Q Consensus 165 ~Sml~~~~Ld-~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~D 243 (646)
+..|+-.+++ ..++.+|+=+||=+--. ++.... . +...++-.|.|.+- +.+|.. .++..|
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~--~l~~~~----~---~~~~~~Lle~D~RF--------~~~~~~--~F~fyD 72 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYE--ALKKES----K---PRIQSFLLEYDRRF--------EQFGGD--EFVFYD 72 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHH--HHHhhc----C---CCccEEEEeecchH--------HhcCCc--ceEECC
Confidence 3334444444 23567888777643222 222211 1 45678888988642 233433 345666
Q ss_pred CCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 244 ASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 244 a~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
......+.. .....||+|++|||--. ...+.+....+-.++|+++.++.+
T Consensus 73 ~~~p~~~~~------~l~~~~d~vv~DPPFl~----------------------~ec~~k~a~ti~~L~k~~~kii~~-- 122 (162)
T PF10237_consen 73 YNEPEELPE------ELKGKFDVVVIDPPFLS----------------------EECLTKTAETIRLLLKPGGKIILC-- 122 (162)
T ss_pred CCChhhhhh------hcCCCceEEEECCCCCC----------------------HHHHHHHHHHHHHHhCccceEEEe--
Confidence 554322110 11358999999999411 123334455555566889999987
Q ss_pred CCCccccHHHHHHHH
Q psy17365 324 SLNPLEDEAVIQRLI 338 (646)
Q Consensus 324 Sl~p~ENE~VV~~~L 338 (646)
.+.++|..+.+.|
T Consensus 123 --Tg~~~~~~~~~ll 135 (162)
T PF10237_consen 123 --TGEEMEELIKKLL 135 (162)
T ss_pred --cHHHHHHHHHHHh
Confidence 4778999999988
No 275
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=91.06 E-value=3.6 Score=42.04 Aligned_cols=124 Identities=14% Similarity=0.160 Sum_probs=92.5
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~~ 254 (646)
+.+.++.|+||--|..+..+...- +...++|.|+++.-+..+..|+++.+. +.+.+..+|. ++.+..
T Consensus 15 ~~~~~iaDIGsDHAYLp~~Lv~~~--------~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dg--l~~l~~-- 82 (226)
T COG2384 15 KQGARIADIGSDHAYLPIYLVKNN--------PASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDG--LAVLEL-- 82 (226)
T ss_pred HcCCceeeccCchhHhHHHHHhcC--------CcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCC--ccccCc--
Confidence 456669999999999998887642 567899999999999999999998875 4577788887 333221
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHH
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVI 334 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV 334 (646)
...+|.|.. .|.| ..+-..||.++.+.|+.=-++| +-|--++.-+
T Consensus 83 ------~d~~d~ivI----AGMG--------------------G~lI~~ILee~~~~l~~~~rlI-----LQPn~~~~~L 127 (226)
T COG2384 83 ------EDEIDVIVI----AGMG--------------------GTLIREILEEGKEKLKGVERLI-----LQPNIHTYEL 127 (226)
T ss_pred ------cCCcCEEEE----eCCc--------------------HHHHHHHHHHhhhhhcCcceEE-----ECCCCCHHHH
Confidence 135787765 3444 2344689999999888544666 3677899999
Q ss_pred HHHHHHccCcEEEe
Q psy17365 335 QRLIVETQGAVQLV 348 (646)
Q Consensus 335 ~~~L~~~~~~~elv 348 (646)
++.|..++ ++++
T Consensus 128 R~~L~~~~--~~I~ 139 (226)
T COG2384 128 REWLSANS--YEIK 139 (226)
T ss_pred HHHHHhCC--ceee
Confidence 99999886 4554
No 276
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=91.04 E-value=0.99 Score=49.07 Aligned_cols=102 Identities=15% Similarity=0.160 Sum_probs=63.4
Q ss_pred CCCCCeEEEEcCCCchHH-HHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 175 VQTHHKVLDMCAAPGSKT-AQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT-~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
.+++.+|+=+||||=|.. .++|..+ +...|+++|.++.|++++++. .+...+.....+ ........
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~--------Ga~~Viv~d~~~~Rl~~A~~~---~g~~~~~~~~~~--~~~~~~~~ 232 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLL--------GASVVIVVDRSPERLELAKEA---GGADVVVNPSED--DAGAEILE 232 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc--------CCceEEEeCCCHHHHHHHHHh---CCCeEeecCccc--cHHHHHHH
Confidence 455669999999995544 5555554 478999999999999887552 333221111111 00000000
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
... ...||.|+- |||.. ..+..|++++++||++++.
T Consensus 233 ~t~----g~g~D~vie---~~G~~-------------------------~~~~~ai~~~r~gG~v~~v 268 (350)
T COG1063 233 LTG----GRGADVVIE---AVGSP-------------------------PALDQALEALRPGGTVVVV 268 (350)
T ss_pred HhC----CCCCCEEEE---CCCCH-------------------------HHHHHHHHHhcCCCEEEEE
Confidence 001 136998884 77722 2588899999999999976
No 277
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.97 E-value=0.44 Score=49.63 Aligned_cols=70 Identities=19% Similarity=0.211 Sum_probs=51.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
+.||+...|++|+|||.|-||... .-.|+|+|--+-+-.+ +....|.-...|+..|..
T Consensus 209 L~~~M~avDLGAcPGGWTyqLVkr----------~m~V~aVDng~ma~sL-------~dtg~v~h~r~DGfk~~P----- 266 (358)
T COG2933 209 LAPGMWAVDLGACPGGWTYQLVKR----------NMRVYAVDNGPMAQSL-------MDTGQVTHLREDGFKFRP----- 266 (358)
T ss_pred hcCCceeeecccCCCccchhhhhc----------ceEEEEeccchhhhhh-------hcccceeeeeccCccccc-----
Confidence 568999999999999999999764 4489999977654322 344456667778776632
Q ss_pred CCCCCCCCCCCeeecCC
Q psy17365 255 ADGNKVPMKFDRVLCDV 271 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~ 271 (646)
.....|-.+||.
T Consensus 267 -----~r~~idWmVCDm 278 (358)
T COG2933 267 -----TRSNIDWMVCDM 278 (358)
T ss_pred -----CCCCCceEEeeh
Confidence 125789999984
No 278
>PRK11524 putative methyltransferase; Provisional
Probab=90.62 E-value=0.45 Score=50.23 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=35.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHH
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAK 230 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~ 230 (646)
.+|+.|||-++|+|+... +|..+ .-..+++|++++-++++.++++
T Consensus 207 ~~GD~VLDPF~GSGTT~~-AA~~l---------gR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 207 NPGDIVLDPFAGSFTTGA-VAKAS---------GRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred CCCCEEEECCCCCcHHHH-HHHHc---------CCCEEEEeCCHHHHHHHHHHHH
Confidence 689999999999996443 44443 2368999999999999988764
No 279
>PRK11524 putative methyltransferase; Provisional
Probab=90.40 E-value=0.44 Score=50.27 Aligned_cols=76 Identities=14% Similarity=0.156 Sum_probs=45.6
Q ss_pred CCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhcc
Q psy17365 235 PCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAV 314 (646)
Q Consensus 235 ~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKp 314 (646)
.+..++++|+..+.... ....||.|++|||.-...... +. ...|.. ..........|..+.++||+
T Consensus 7 ~~~~i~~gD~~~~l~~l--------~~~siDlIitDPPY~~~~~~~-~~--~~~~~~---~~~~~~l~~~l~~~~rvLK~ 72 (284)
T PRK11524 7 EAKTIIHGDALTELKKI--------PSESVDLIFADPPYNIGKNFD-GL--IEAWKE---DLFIDWLYEWIDECHRVLKK 72 (284)
T ss_pred CCCEEEeccHHHHHHhc--------ccCcccEEEECCCcccccccc-cc--cccccH---HHHHHHHHHHHHHHHHHhCC
Confidence 34567888887643211 125799999999984311110 11 112321 12223346889999999999
Q ss_pred CCeEEEEcCCC
Q psy17365 315 GGKIAYSTCSL 325 (646)
Q Consensus 315 GG~LVYSTCSl 325 (646)
||.|+.. |+.
T Consensus 73 ~G~i~i~-~~~ 82 (284)
T PRK11524 73 QGTMYIM-NST 82 (284)
T ss_pred CcEEEEE-cCc
Confidence 9998864 554
No 280
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=90.26 E-value=0.48 Score=43.00 Aligned_cols=88 Identities=18% Similarity=0.303 Sum_probs=56.5
Q ss_pred CchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCee
Q psy17365 188 PGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRV 267 (646)
Q Consensus 188 PGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~I 267 (646)
-|..++++|..+ + ..|++.|.++.|++.+ +++|... ++..+...+......... ...+|.|
T Consensus 2 vG~~a~q~ak~~--------G-~~vi~~~~~~~k~~~~----~~~Ga~~--~~~~~~~~~~~~i~~~~~----~~~~d~v 62 (130)
T PF00107_consen 2 VGLMAIQLAKAM--------G-AKVIATDRSEEKLELA----KELGADH--VIDYSDDDFVEQIRELTG----GRGVDVV 62 (130)
T ss_dssp HHHHHHHHHHHT--------T-SEEEEEESSHHHHHHH----HHTTESE--EEETTTSSHHHHHHHHTT----TSSEEEE
T ss_pred hHHHHHHHHHHc--------C-CEEEEEECCHHHHHHH----Hhhcccc--cccccccccccccccccc----cccceEE
Confidence 477888998875 3 7999999999998776 4577543 333332222111000001 1368877
Q ss_pred ecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 268 LCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 268 L~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
+- |+|.+ ..+..++++|++||++|...
T Consensus 63 id---~~g~~-------------------------~~~~~~~~~l~~~G~~v~vg 89 (130)
T PF00107_consen 63 ID---CVGSG-------------------------DTLQEAIKLLRPGGRIVVVG 89 (130)
T ss_dssp EE---SSSSH-------------------------HHHHHHHHHEEEEEEEEEES
T ss_pred EE---ecCcH-------------------------HHHHHHHHHhccCCEEEEEE
Confidence 74 66643 46889999999999998653
No 281
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=89.74 E-value=1.9 Score=46.41 Aligned_cols=104 Identities=14% Similarity=0.135 Sum_probs=59.1
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
.++++|++||=.++ |+....++++.... +...|++.|.+..|++.++ ++|... +++.....+.....
T Consensus 172 ~~~~~g~~VlV~G~--g~vG~~a~~~ak~~-----G~~~Vi~~~~~~~~~~~~~----~~Ga~~--~i~~~~~~~~~~i~ 238 (358)
T TIGR03451 172 GGVKRGDSVAVIGC--GGVGDAAIAGAALA-----GASKIIAVDIDDRKLEWAR----EFGATH--TVNSSGTDPVEAIR 238 (358)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHH----HcCCce--EEcCCCcCHHHHHH
Confidence 35789999998754 55554444433210 2335999999999987763 467643 22221111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
.... ...+|.|+ | |+|.. ..+..+++++++||++|..
T Consensus 239 ~~~~----~~g~d~vi-d--~~g~~-------------------------~~~~~~~~~~~~~G~iv~~ 275 (358)
T TIGR03451 239 ALTG----GFGADVVI-D--AVGRP-------------------------ETYKQAFYARDLAGTVVLV 275 (358)
T ss_pred HHhC----CCCCCEEE-E--CCCCH-------------------------HHHHHHHHHhccCCEEEEE
Confidence 0001 12488776 4 66532 2466788899999999864
No 282
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=89.34 E-value=0.55 Score=46.50 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=29.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHH
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLV 226 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~ 226 (646)
-.+|+.|||-+||+|+. +.+|..++ -..+++|+++.-+++++
T Consensus 189 t~~gdiVlDpF~GSGTT-~~aa~~l~---------R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTT-AVAAEELG---------RRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp S-TT-EEEETT-TTTHH-HHHHHHTT----------EEEEEESSHHHHHHHH
T ss_pred hccceeeehhhhccChH-HHHHHHcC---------CeEEEEeCCHHHHHHhc
Confidence 46899999999999974 44445542 36899999999988765
No 283
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=88.67 E-value=3.7 Score=43.96 Aligned_cols=101 Identities=12% Similarity=0.129 Sum_probs=59.0
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
...+|++||=.+| |+....++++.... +...|++.|.+++|++.++ .+|...+ ++.+-..+....
T Consensus 166 ~~~~g~~VlV~G~--G~vG~~aiqlak~~-----G~~~Vi~~~~~~~~~~~a~----~lGa~~v--i~~~~~~~~~~~-- 230 (343)
T PRK09880 166 GDLQGKRVFVSGV--GPIGCLIVAAVKTL-----GAAEIVCADVSPRSLSLAR----EMGADKL--VNPQNDDLDHYK-- 230 (343)
T ss_pred CCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCcEEEEEeCCHHHHHHHH----HcCCcEE--ecCCcccHHHHh--
Confidence 3457999987764 55555444443311 2447999999999987664 4776543 221111111110
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
.. ...||.|+ | |+|.. ..+..++++|++||++|..-
T Consensus 231 --~~---~g~~D~vi-d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~~G 266 (343)
T PRK09880 231 --AE---KGYFDVSF-E--VSGHP-------------------------SSINTCLEVTRAKGVMVQVG 266 (343)
T ss_pred --cc---CCCCCEEE-E--CCCCH-------------------------HHHHHHHHHhhcCCEEEEEc
Confidence 00 12488776 4 45521 24677889999999998654
No 284
>KOG1709|consensus
Probab=88.36 E-value=2.8 Score=42.75 Aligned_cols=112 Identities=14% Similarity=0.084 Sum_probs=69.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCC-ccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVM-PNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~-p~~~~~~ 254 (646)
..|.+||.++-|-|-..+.+-+. +--.=+-+|.++.-++.++.+.=+ .-.||++..+-=+.. +.+
T Consensus 100 tkggrvLnVGFGMgIidT~iQe~---------~p~~H~IiE~hp~V~krmr~~gw~-ek~nViil~g~WeDvl~~L---- 165 (271)
T KOG1709|consen 100 TKGGRVLNVGFGMGIIDTFIQEA---------PPDEHWIIEAHPDVLKRMRDWGWR-EKENVIILEGRWEDVLNTL---- 165 (271)
T ss_pred hCCceEEEeccchHHHHHHHhhc---------CCcceEEEecCHHHHHHHHhcccc-cccceEEEecchHhhhccc----
Confidence 57889999999999887776554 223344578898887777665322 235777766532221 111
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCcccc
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLED 330 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~EN 330 (646)
+ ...||-|+-|.= | | .-+++ +..-+++.++|||+|.+-| |-..-..|
T Consensus 166 ~-----d~~FDGI~yDTy----~-----e------~yEdl-------~~~hqh~~rLLkP~gv~Sy--fNg~~~~~ 212 (271)
T KOG1709|consen 166 P-----DKHFDGIYYDTY----S-----E------LYEDL-------RHFHQHVVRLLKPEGVFSY--FNGLGADN 212 (271)
T ss_pred c-----ccCcceeEeech----h-----h------HHHHH-------HHHHHHHhhhcCCCceEEE--ecCcccch
Confidence 1 245999999852 0 0 11222 2344589999999995554 66555554
No 285
>KOG3987|consensus
Probab=88.34 E-value=0.31 Score=49.07 Aligned_cols=39 Identities=21% Similarity=0.171 Sum_probs=30.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHH
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYML 225 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L 225 (646)
...++||++||-|-.|.+++-... .|+|.|.|......|
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fe----------evyATElS~tMr~rL 150 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFE----------EVYATELSWTMRDRL 150 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHH----------HHHHHHhhHHHHHHH
Confidence 346899999999999998876543 588988887764443
No 286
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=87.89 E-value=1.3 Score=48.52 Aligned_cols=48 Identities=23% Similarity=0.198 Sum_probs=36.5
Q ss_pred ccCCCCCCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHH
Q psy17365 172 LLDVQTHHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVH 227 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~ 227 (646)
.+.+++|.+||..++|+ |..+.++|..+ +.+.|+++|.++.+++.+++
T Consensus 179 ~~~~~~g~~VlV~g~G~vG~~~~~la~~~--------g~~~vi~~~~~~~~~~~~~~ 227 (386)
T cd08283 179 LAEVKPGDTVAVWGCGPVGLFAARSAKLL--------GAERVIAIDRVPERLEMARS 227 (386)
T ss_pred hccCCCCCEEEEECCCHHHHHHHHHHHHc--------CCCEEEEEcCCHHHHHHHHH
Confidence 45678899999997766 66667777664 24579999999999887765
No 287
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=87.75 E-value=2.9 Score=44.03 Aligned_cols=45 Identities=16% Similarity=0.087 Sum_probs=34.9
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHH
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR 231 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~r 231 (646)
+|||++||||.-+..+.+.+. ....++++|.|+..+++.+.-++.
T Consensus 36 ~vLD~GsGpGta~wAa~~~~~-------~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 36 SVLDFGSGPGTALWAAREVWP-------SLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred eEEEecCChHHHHHHHHHHhc-------CceeeeeecCCHHHHHHHHHHHhc
Confidence 799999999987766666664 245799999999998876665543
No 288
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.39 E-value=2.9 Score=45.00 Aligned_cols=95 Identities=15% Similarity=0.163 Sum_probs=53.8
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcC---CHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDV---DNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Di---s~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
+++|++||=.++ |+....+++++... +. .|++++. +++|++.+ +.+|...+ ......+..
T Consensus 170 ~~~g~~vlI~G~--G~vG~~a~q~ak~~-----G~-~vi~~~~~~~~~~~~~~~----~~~Ga~~v---~~~~~~~~~-- 232 (355)
T cd08230 170 TWNPRRALVLGA--GPIGLLAALLLRLR-----GF-EVYVLNRRDPPDPKADIV----EELGATYV---NSSKTPVAE-- 232 (355)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHHc-----CC-eEEEEecCCCCHHHHHHH----HHcCCEEe---cCCccchhh--
Confidence 468999987765 55444333333211 23 6888886 67887655 45776422 111111100
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
. .....||.|+- |+|.. ..+..++++|++||++|.
T Consensus 233 ~------~~~~~~d~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 267 (355)
T cd08230 233 V------KLVGEFDLIIE---ATGVP-------------------------PLAFEALPALAPNGVVIL 267 (355)
T ss_pred h------hhcCCCCEEEE---CcCCH-------------------------HHHHHHHHHccCCcEEEE
Confidence 0 01135887663 44422 247788999999998874
No 289
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=87.21 E-value=4.2 Score=43.44 Aligned_cols=91 Identities=18% Similarity=0.116 Sum_probs=54.7
Q ss_pred cCCCCCCeEEEEcCCCch-HHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 173 LDVQTHHKVLDMCAAPGS-KTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGg-KT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.++++|++||=.++|+-| .+.++|..+ ...|++.+.+++|++.+ +.+|...+. +.. ...
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~---------G~~vi~~~~~~~~~~~a----~~~Ga~~vi--~~~--~~~--- 220 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQ---------GATVHVMTRGAAARRLA----LALGAASAG--GAY--DTP--- 220 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHC---------CCeEEEEeCChHHHHHH----HHhCCceec--ccc--ccC---
Confidence 467899999988753222 223344332 23689999999987654 557876432 111 000
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
...+|.++. |++.| ..+..++++|++||++|.
T Consensus 221 ---------~~~~d~~i~---~~~~~-------------------------~~~~~~~~~l~~~G~~v~ 252 (329)
T TIGR02822 221 ---------PEPLDAAIL---FAPAG-------------------------GLVPPALEALDRGGVLAV 252 (329)
T ss_pred ---------cccceEEEE---CCCcH-------------------------HHHHHHHHhhCCCcEEEE
Confidence 124776553 22222 247789999999999875
No 290
>PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function.; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A.
Probab=86.97 E-value=0.48 Score=44.11 Aligned_cols=75 Identities=21% Similarity=0.344 Sum_probs=48.7
Q ss_pred eEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCC
Q psy17365 237 AIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGG 316 (646)
Q Consensus 237 i~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG 316 (646)
+.+..+|+....... ...||.|..|+- | -.+||++|.. +++....+++++||
T Consensus 33 L~L~~gDa~~~l~~l---------~~~~Da~ylDgF-s----P~~nPelWs~--------------e~~~~l~~~~~~~~ 84 (124)
T PF05430_consen 33 LTLWFGDAREMLPQL---------DARFDAWYLDGF-S----PAKNPELWSE--------------ELFKKLARLSKPGG 84 (124)
T ss_dssp EEEEES-HHHHHHHB----------T-EEEEEE-SS------TTTSGGGSSH--------------HHHHHHHHHEEEEE
T ss_pred EEEEEcHHHHHHHhC---------cccCCEEEecCC-C----CcCCcccCCH--------------HHHHHHHHHhCCCc
Confidence 455667775432211 157999999952 2 2579998653 78999999999999
Q ss_pred eEEEEcCCCCccccHHHHHHHHHHccCcEEEe
Q psy17365 317 KIAYSTCSLNPLEDEAVIQRLIVETQGAVQLV 348 (646)
Q Consensus 317 ~LVYSTCSl~p~ENE~VV~~~L~~~~~~~elv 348 (646)
+++--||+ ..|...|.+.+ |.+.
T Consensus 85 ~l~Tys~a-------~~Vr~~L~~aG--F~v~ 107 (124)
T PF05430_consen 85 TLATYSSA-------GAVRRALQQAG--FEVE 107 (124)
T ss_dssp EEEES--B-------HHHHHHHHHCT--EEEE
T ss_pred EEEEeech-------HHHHHHHHHcC--CEEE
Confidence 88743332 46999999987 5554
No 291
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=86.74 E-value=3.2 Score=44.98 Aligned_cols=103 Identities=16% Similarity=0.146 Sum_probs=58.8
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+++|++||=.++ |+....++++.... +...|++.|.++.|++.++ .+|...+ ++.+...+.....
T Consensus 187 ~~i~~g~~VlV~G~--G~vG~~a~~lak~~-----G~~~Vi~~~~~~~r~~~a~----~~Ga~~~--i~~~~~~~~~~i~ 253 (371)
T cd08281 187 AGVRPGQSVAVVGL--GGVGLSALLGAVAA-----GASQVVAVDLNEDKLALAR----ELGATAT--VNAGDPNAVEQVR 253 (371)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCcEEEEcCCHHHHHHHH----HcCCceE--eCCCchhHHHHHH
Confidence 45789999988764 55544444433211 2336999999999987664 4676432 2222111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
... ...+|.|+ | |+|.+ ..+..++++|++||++|..
T Consensus 254 -~~~----~~g~d~vi-d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 289 (371)
T cd08281 254 -ELT----GGGVDYAF-E--MAGSV-------------------------PALETAYEITRRGGTTVTA 289 (371)
T ss_pred -HHh----CCCCCEEE-E--CCCCh-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 000 12478776 3 55532 3477788999999998843
No 292
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=86.36 E-value=1.1 Score=45.51 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=35.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL 232 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl 232 (646)
.-.++|-|||.|...+-+. ++|.+ .=..|+|-|+|++.++++..|+.-+
T Consensus 52 p~tLyDPCCG~gyLLTVlG-LLh~~-----~l~~v~aSDId~~aL~lA~kNL~LL 100 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLG-LLHRR-----RLRRVYASDIDEDALELARKNLSLL 100 (246)
T ss_dssp -EEEEETT-TTSHHHHHHH-HHTGG-----GEEEEEEEES-HHHHHHHHHHHHCC
T ss_pred CeeeeccCCCccHHHHHHH-HhhhH-----HHHhHhcccCCHHHHHHHHHhhhhc
Confidence 3479999999999888776 45532 2357999999999999888886543
No 293
>PRK13699 putative methylase; Provisional
Probab=86.10 E-value=1.5 Score=44.97 Aligned_cols=48 Identities=13% Similarity=0.027 Sum_probs=36.7
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL 232 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl 232 (646)
-.+|+.|||-++|+|+...+ |..+ .-..+++|+++.-++.+.++++..
T Consensus 161 s~~g~~vlDpf~Gsgtt~~a-a~~~---------~r~~~g~e~~~~y~~~~~~r~~~~ 208 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVA-ALQS---------GRRYIGIELLEQYHRAGQQRLAAV 208 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHH-HHHc---------CCCEEEEecCHHHHHHHHHHHHHH
Confidence 46899999999999975443 3333 236789999999988888877654
No 294
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=85.78 E-value=3.9 Score=43.87 Aligned_cols=96 Identities=13% Similarity=0.240 Sum_probs=57.1
Q ss_pred CCCCCCeEEEEcCCCchH-HHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSK-TAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgK-T~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
.+++|++||=.+||+=|. ++++|..+. +...|+++|.++.|++.++. .+.. ..+. + +..
T Consensus 160 ~~~~g~~VlV~G~G~vGl~~~~~a~~~~-------g~~~vi~~~~~~~k~~~a~~----~~~~--~~~~-~---~~~--- 219 (341)
T cd08237 160 AHKDRNVIGVWGDGNLGYITALLLKQIY-------PESKLVVFGKHQEKLDLFSF----ADET--YLID-D---IPE--- 219 (341)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHhc-------CCCcEEEEeCcHhHHHHHhh----cCce--eehh-h---hhh---
Confidence 367899999888654332 344454321 24579999999999887753 3321 1111 1 100
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
...+|.|+ | |+|..+ . ...+..++++|++||++|..-
T Consensus 220 --------~~g~d~vi-D--~~G~~~---~-------------------~~~~~~~~~~l~~~G~iv~~G 256 (341)
T cd08237 220 --------DLAVDHAF-E--CVGGRG---S-------------------QSAINQIIDYIRPQGTIGLMG 256 (341)
T ss_pred --------ccCCcEEE-E--CCCCCc---c-------------------HHHHHHHHHhCcCCcEEEEEe
Confidence 12488776 4 555210 0 134778999999999998543
No 295
>PF13636 Nol1_Nop2_Fmu_2: pre-rRNA processing and ribosome biogenesis; PDB: 3M4X_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A.
Probab=85.68 E-value=1 Score=40.30 Aligned_cols=91 Identities=18% Similarity=0.231 Sum_probs=61.4
Q ss_pred CCCceEEeCceeeEEEecCCCCccceeeccchhHHHhhhhCCCcEEEeCHHHHHHHHhcCCCCCCccccccCHHHHhhhc
Q psy17365 514 ENNLKIINTGVKSFARCDNKVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILNNSTPEQPTDLELLRPETRQTLT 593 (646)
Q Consensus 514 ~~~lkiv~~Gvk~F~r~~~~~~~c~~Ri~~eg~~~l~~~~~~kr~v~~~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~~ 593 (646)
...|+|+++|+++=+.... .|+.+++++..+.+.. .+++|+++.++....|..+.-. ++
T Consensus 10 ~~~l~v~r~Gl~lg~~~k~-----~f~Ps~~la~~~~~~~-~~~~iel~~e~a~~yl~Ge~i~----~~----------- 68 (102)
T PF13636_consen 10 LPGLKVLRAGLYLGEIKKN-----RFEPSHALAMALGPEA-TKNVIELDDEQALRYLRGEDIE----LD----------- 68 (102)
T ss_dssp -TTSEECECSEEEEEEETT-----EEEEBHHHHHCB--GC-CS-EEEETCHHHHHHHCT--EE-----S-----------
T ss_pred cCCCeEEecCcEeeeEeCC-----cEEECHHHHHhhCccc-cceEEECCHHHHHHHHcCCccc----CC-----------
Confidence 4679999999999887654 5999999999998887 8999999999999999875543 11
Q ss_pred ccCCCCccEEEEEecCCCeEEEEeeeccceeeccCH
Q psy17365 594 REGFGVGSCLLELQDDLPLSLVGWRGKSSVRAYISG 629 (646)
Q Consensus 594 ~~~~~~G~~v~~~~~~~~~~~~~w~g~~s~~~~v~k 629 (646)
....|-++|.++ +.++=++-+.|.. ++=+.+|
T Consensus 69 --~~~~G~vlv~~~-g~~LG~gk~~g~~-lkN~yPk 100 (102)
T PF13636_consen 69 --PPDKGWVLVTYE-GFPLGWGKYVGGR-LKNYYPK 100 (102)
T ss_dssp --S--EEEEEEEEC-CCEEEEEEEETTE-EEE-S-G
T ss_pred --CCCCcEEEEEEC-CEeeEEEEeeCCE-EeccCCC
Confidence 113488888776 5555555566653 4444444
No 296
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=85.52 E-value=3.9 Score=43.87 Aligned_cols=50 Identities=20% Similarity=0.250 Sum_probs=33.7
Q ss_pred cCCCCCCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q psy17365 173 LDVQTHHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP 235 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ 235 (646)
..+++|++||=.+||+ |..++++|..+ ...|++.|.+++|++.++ .+|..
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~---------G~~vi~~~~~~~~~~~~~----~~Ga~ 212 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAM---------GAAVVAIDIDPEKLEMMK----GFGAD 212 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHc---------CCeEEEEcCCHHHHHHHH----HhCCc
Confidence 3578899999888743 33444444443 236899999999987663 45764
No 297
>KOG3178|consensus
Probab=84.58 E-value=2.9 Score=45.31 Aligned_cols=106 Identities=19% Similarity=0.172 Sum_probs=66.7
Q ss_pred cccCCCCC----CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCC
Q psy17365 171 LLLDVQTH----HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASV 246 (646)
Q Consensus 171 ~~Ld~~pg----~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~ 246 (646)
.+++...| ...+|+++|-|..+-+++... | .|-+++.+..-+-....+.. -| |.-+-+|...
T Consensus 167 ~il~~~~Gf~~v~~avDvGgGiG~v~k~ll~~f--------p--~ik~infdlp~v~~~a~~~~-~g---V~~v~gdmfq 232 (342)
T KOG3178|consen 167 KILEVYTGFKGVNVAVDVGGGIGRVLKNLLSKY--------P--HIKGINFDLPFVLAAAPYLA-PG---VEHVAGDMFQ 232 (342)
T ss_pred hhhhhhcccccCceEEEcCCcHhHHHHHHHHhC--------C--CCceeecCHHHHHhhhhhhc-CC---cceecccccc
Confidence 33444445 789999999999999998743 2 36667777766555544443 33 4444455422
Q ss_pred CccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 247 MPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 247 ~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
. ...-|.|++ ..++..|+.++. .+||+++++.|+|||.|+.--|
T Consensus 233 --~-----------~P~~daI~m-------------kWiLhdwtDedc-------vkiLknC~~sL~~~GkIiv~E~ 276 (342)
T KOG3178|consen 233 --D-----------TPKGDAIWM-------------KWILHDWTDEDC-------VKILKNCKKSLPPGGKIIVVEN 276 (342)
T ss_pred --c-----------CCCcCeEEE-------------EeecccCChHHH-------HHHHHHHHHhCCCCCEEEEEec
Confidence 0 012344443 123334555544 4799999999999999997654
No 298
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=84.18 E-value=5.6 Score=41.30 Aligned_cols=101 Identities=21% Similarity=0.185 Sum_probs=56.7
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
.+.+|++||=+++ |+....++++.... +...|++.|.+++|++++ +.+|...+. +.+ ........
T Consensus 117 ~~~~g~~VlV~G~--G~vG~~~~~~ak~~-----G~~~Vi~~~~~~~r~~~a----~~~Ga~~~i--~~~--~~~~~~~~ 181 (280)
T TIGR03366 117 GDLKGRRVLVVGA--GMLGLTAAAAAAAA-----GAARVVAADPSPDRRELA----LSFGATALA--EPE--VLAERQGG 181 (280)
T ss_pred cCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHH----HHcCCcEec--Cch--hhHHHHHH
Confidence 4458999998754 55554444443211 233588899999998765 446764321 111 11100000
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
... ...+|.|+ | |+|.. ..+..++++|++||++|..
T Consensus 182 ~~~----~~g~d~vi-d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 217 (280)
T TIGR03366 182 LQN----GRGVDVAL-E--FSGAT-------------------------AAVRACLESLDVGGTAVLA 217 (280)
T ss_pred HhC----CCCCCEEE-E--CCCCh-------------------------HHHHHHHHHhcCCCEEEEe
Confidence 001 12488776 3 45432 3477889999999998843
No 299
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=84.07 E-value=6.4 Score=42.06 Aligned_cols=104 Identities=17% Similarity=0.200 Sum_probs=59.5
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+++|++||=.++ |+....+++..... +...|++.+.++++++.+ +.+|... +++.+.........
T Consensus 156 ~~~~~g~~vlV~G~--g~vG~~~~~~a~~~-----G~~~v~~~~~~~~~~~~~----~~~Ga~~--~i~~~~~~~~~~~~ 222 (347)
T PRK10309 156 AQGCEGKNVIIIGA--GTIGLLAIQCAVAL-----GAKSVTAIDINSEKLALA----KSLGAMQ--TFNSREMSAPQIQS 222 (347)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCeEEEECCCHHHHHHH----HHcCCce--EecCcccCHHHHHH
Confidence 35678999988753 55554444433211 244588999999998765 3467543 22222111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
... ...+|.+++| |+|.. ..+..++++|++||+++..
T Consensus 223 -~~~----~~~~d~~v~d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~~ 259 (347)
T PRK10309 223 -VLR----ELRFDQLILE--TAGVP-------------------------QTVELAIEIAGPRAQLALV 259 (347)
T ss_pred -Hhc----CCCCCeEEEE--CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 001 1357866677 66632 3577889999999998854
No 300
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=83.87 E-value=7.8 Score=40.66 Aligned_cols=100 Identities=17% Similarity=0.212 Sum_probs=55.8
Q ss_pred CCCCCCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 174 DVQTHHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 174 d~~pg~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
.++++++||..++|+ |..+.++|..+ ...|++.+.++.+.+.+++ +|+..+..... ........
T Consensus 162 ~~~~~~~vli~g~g~vG~~~~~la~~~---------G~~V~~~~~s~~~~~~~~~----~g~~~~~~~~~--~~~~~~~~ 226 (338)
T cd08254 162 EVKPGETVLVIGLGGLGLNAVQIAKAM---------GAAVIAVDIKEEKLELAKE----LGADEVLNSLD--DSPKDKKA 226 (338)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHc---------CCEEEEEcCCHHHHHHHHH----hCCCEEEcCCC--cCHHHHHH
Confidence 477899999864321 33444444442 2358999999988776633 56543222111 11100000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
. .....+|.|+. |+|.+ ..+..+++.|++||++|..
T Consensus 227 --~---~~~~~~D~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 262 (338)
T cd08254 227 --A---GLGGGFDVIFD---FVGTQ-------------------------PTFEDAQKAVKPGGRIVVV 262 (338)
T ss_pred --H---hcCCCceEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEEE
Confidence 0 01135887763 44422 3577889999999998853
No 301
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=80.84 E-value=9.8 Score=37.66 Aligned_cols=127 Identities=17% Similarity=0.184 Sum_probs=66.7
Q ss_pred CCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHH------------HHHcC-CCCeEEEecCCCCCcccccc
Q psy17365 187 APGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQ------------AKRLN-SPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 187 aPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n------------~~rlg-~~ni~v~~~Da~~~p~~~~~ 253 (646)
|-|...+-+|..+.. ..-.|+++|+++++++.+.+- +++.. ..++.++ .|...
T Consensus 7 GlGyvGl~~A~~lA~------~G~~V~g~D~~~~~v~~l~~g~~p~~E~~l~~ll~~~~~~~~l~~t-~~~~~------- 72 (185)
T PF03721_consen 7 GLGYVGLPLAAALAE------KGHQVIGVDIDEEKVEALNNGELPIYEPGLDELLKENVSAGRLRAT-TDIEE------- 72 (185)
T ss_dssp --STTHHHHHHHHHH------TTSEEEEE-S-HHHHHHHHTTSSSS-CTTHHHHHHHHHHTTSEEEE-SEHHH-------
T ss_pred CCCcchHHHHHHHHh------CCCEEEEEeCChHHHHHHhhccccccccchhhhhccccccccchhh-hhhhh-------
Confidence 556555555555541 123899999999998876532 11111 1122222 11100
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHH
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAV 333 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~V 333 (646)
.....|.+++-+|.--++ ...||. .. -...++...+.+++|-.+|+ -+|+.|.-.+.+
T Consensus 73 ------ai~~adv~~I~VpTP~~~--~~~~Dl------------s~-v~~a~~~i~~~l~~~~lvV~-~STvppGtt~~~ 130 (185)
T PF03721_consen 73 ------AIKDADVVFICVPTPSDE--DGSPDL------------SY-VESAIESIAPVLRPGDLVVI-ESTVPPGTTEEL 130 (185)
T ss_dssp ------HHHH-SEEEE----EBET--TTSBET------------HH-HHHHHHHHHHHHCSCEEEEE-SSSSSTTHHHHH
T ss_pred ------hhhccceEEEecCCCccc--cCCccH------------HH-HHHHHHHHHHHHhhcceEEE-ccEEEEeeehHh
Confidence 013478888877633332 123332 11 13556677778888555555 479999999999
Q ss_pred HHHHHHHccC---cEEEee
Q psy17365 334 IQRLIVETQG---AVQLVD 349 (646)
Q Consensus 334 V~~~L~~~~~---~~elv~ 349 (646)
+..+|++.++ +|.++-
T Consensus 131 ~~~ile~~~~~~~~f~la~ 149 (185)
T PF03721_consen 131 LKPILEKRSGKKEDFHLAY 149 (185)
T ss_dssp HHHHHHHHCCTTTCEEEEE
T ss_pred hhhhhhhhcccccCCeEEE
Confidence 9999998764 355543
No 302
>PRK13699 putative methylase; Provisional
Probab=80.79 E-value=5.1 Score=41.01 Aligned_cols=86 Identities=10% Similarity=-0.007 Sum_probs=47.6
Q ss_pred EEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCe
Q psy17365 238 IITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGK 317 (646)
Q Consensus 238 ~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~ 317 (646)
.+.++|+.+..... ....+|.|+.|||+-- |.-.+.-. .+. ...........+.++.++|||||.
T Consensus 3 ~l~~gD~le~l~~l--------pd~SVDLIiTDPPY~i-~~~~~~~~---~~~---~~~~~ew~~~~l~E~~RVLKpgg~ 67 (227)
T PRK13699 3 RFILGNCIDVMARF--------PDNAVDFILTDPPYLV-GFRDRQGR---TIA---GDKTDEWLQPACNEMYRVLKKDAL 67 (227)
T ss_pred eEEechHHHHHHhC--------CccccceEEeCCCccc-ccccCCCc---ccc---cccHHHHHHHHHHHHHHHcCCCCE
Confidence 46677775532211 1257999999999842 21100000 001 111223446788999999999887
Q ss_pred EEEEcCCCCccccHHHHHHHHHHcc
Q psy17365 318 IAYSTCSLNPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 318 LVYSTCSl~p~ENE~VV~~~L~~~~ 342 (646)
++ +-|+.+. ...+..++++.+
T Consensus 68 l~-if~~~~~---~~~~~~al~~~G 88 (227)
T PRK13699 68 MV-SFYGWNR---VDRFMAAWKNAG 88 (227)
T ss_pred EE-EEecccc---HHHHHHHHHHCC
Confidence 65 4566643 233444555554
No 303
>PLN02740 Alcohol dehydrogenase-like
Probab=80.19 E-value=11 Score=41.17 Aligned_cols=53 Identities=13% Similarity=0.085 Sum_probs=36.0
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC 236 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n 236 (646)
.++++|++||=.++ |+....++++.... +...|+++|.++.|++.++ .+|...
T Consensus 194 ~~~~~g~~VlV~G~--G~vG~~a~q~ak~~-----G~~~Vi~~~~~~~r~~~a~----~~Ga~~ 246 (381)
T PLN02740 194 ANVQAGSSVAIFGL--GAVGLAVAEGARAR-----GASKIIGVDINPEKFEKGK----EMGITD 246 (381)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHC-----CCCcEEEEcCChHHHHHHH----HcCCcE
Confidence 45789999998754 66665555554311 2336999999999988774 467643
No 304
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=80.15 E-value=7.3 Score=41.12 Aligned_cols=100 Identities=20% Similarity=0.228 Sum_probs=55.7
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCC-CCCcccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDA-SVMPNVL 251 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da-~~~p~~~ 251 (646)
..+++|++||=.+| .|+....++++... -...|++.+.+.++.+.+ +.+|...+ ++.+. ..+....
T Consensus 134 ~~~~~g~~VLI~ga-~g~vG~~aiqlAk~------~G~~Vi~~~~s~~~~~~~----~~lGa~~v--i~~~~~~~~~~~~ 200 (325)
T TIGR02825 134 CGVKGGETVMVNAA-AGAVGSVVGQIAKL------KGCKVVGAAGSDEKVAYL----KKLGFDVA--FNYKTVKSLEETL 200 (325)
T ss_pred hCCCCCCEEEEeCC-ccHHHHHHHHHHHH------cCCEEEEEeCCHHHHHHH----HHcCCCEE--EeccccccHHHHH
Confidence 45789999986654 34444443333321 123689999888887666 34676433 22221 1111110
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV 319 (646)
. ... ...+|.|+ | |+|. ..+..++++|++||++|
T Consensus 201 ~-~~~----~~gvdvv~-d--~~G~--------------------------~~~~~~~~~l~~~G~iv 234 (325)
T TIGR02825 201 K-KAS----PDGYDCYF-D--NVGG--------------------------EFSNTVIGQMKKFGRIA 234 (325)
T ss_pred H-HhC----CCCeEEEE-E--CCCH--------------------------HHHHHHHHHhCcCcEEE
Confidence 0 001 12488776 4 4441 23567889999999998
No 305
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.94 E-value=18 Score=41.65 Aligned_cols=117 Identities=11% Similarity=0.026 Sum_probs=66.1
Q ss_pred cCCCCCCeEEEEcCCCchHH-HHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKT-AQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT-~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
+...|+++|+=++||+=|.. ++.|..+ +. .|+++|.++.|++.+ +.+|...+.+-..+.......+
T Consensus 160 aG~~pg~kVlViGaG~iGL~Ai~~Ak~l--------GA-~V~a~D~~~~rle~a----eslGA~~v~i~~~e~~~~~~gy 226 (509)
T PRK09424 160 AGKVPPAKVLVIGAGVAGLAAIGAAGSL--------GA-IVRAFDTRPEVAEQV----ESMGAEFLELDFEEEGGSGDGY 226 (509)
T ss_pred cCCcCCCEEEEECCcHHHHHHHHHHHHC--------CC-EEEEEeCCHHHHHHH----HHcCCeEEEeccccccccccch
Confidence 34678999999999986644 4455444 24 799999999997754 4578653322111100000000
Q ss_pred ccC-CCC---------CCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 252 YTD-ADG---------NKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 252 ~~~-~~g---------~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
... .++ ......+|+|+. |+|.- -++.|. -+++.+++.+|+||++|..
T Consensus 227 a~~~s~~~~~~~~~~~~~~~~gaDVVIe---tag~p-g~~aP~------------------lit~~~v~~mkpGgvIVdv 284 (509)
T PRK09424 227 AKVMSEEFIKAEMALFAEQAKEVDIIIT---TALIP-GKPAPK------------------LITAEMVASMKPGSVIVDL 284 (509)
T ss_pred hhhcchhHHHHHHHHHHhccCCCCEEEE---CCCCC-cccCcc------------------hHHHHHHHhcCCCCEEEEE
Confidence 000 000 000135898886 33310 012232 2358899999999999988
Q ss_pred cCC
Q psy17365 322 TCS 324 (646)
Q Consensus 322 TCS 324 (646)
.|.
T Consensus 285 g~~ 287 (509)
T PRK09424 285 AAE 287 (509)
T ss_pred ccC
Confidence 774
No 306
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=78.90 E-value=10 Score=41.85 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=32.2
Q ss_pred cCCCCCCeEEEEcC-C-CchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy17365 173 LDVQTHHKVLDMCA-A-PGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQ 228 (646)
Q Consensus 173 Ld~~pg~~VLDmCA-a-PGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n 228 (646)
..+++|++||=+++ | -|..++++|..++. +...|++.|.+..|++.+++.
T Consensus 171 ~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~------g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 171 MGIKPGGNTAILGGAGPMGLMAIDYAIHGPI------GPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred cCCCCCCEEEEEeCCCHHHHHHHHHHHhccc------CCceEEEEcCCHHHHHHHHHh
Confidence 45788999886643 2 34444455544310 124799999999998877653
No 307
>PLN02827 Alcohol dehydrogenase-like
Probab=78.22 E-value=9.8 Score=41.56 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=58.8
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCC--CCCccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDA--SVMPNV 250 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da--~~~p~~ 250 (646)
.++++|++||=.++ |+....++++.... +...|++.|.++.|.+.+ +.+|...+ ++... ..+...
T Consensus 189 ~~~~~g~~VlV~G~--G~vG~~~iqlak~~-----G~~~vi~~~~~~~~~~~a----~~lGa~~~--i~~~~~~~~~~~~ 255 (378)
T PLN02827 189 ADVSKGSSVVIFGL--GTVGLSVAQGAKLR-----GASQIIGVDINPEKAEKA----KTFGVTDF--INPNDLSEPIQQV 255 (378)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCeEEEECCCHHHHHHH----HHcCCcEE--EcccccchHHHHH
Confidence 35788999998754 66655555444311 233688999999887665 45776432 22111 011110
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccC-CeEEE
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVG-GKIAY 320 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpG-G~LVY 320 (646)
.. ... ...+|.|+ | |+|.. ..+..+++++++| |++|.
T Consensus 256 v~-~~~----~~g~d~vi-d--~~G~~-------------------------~~~~~~l~~l~~g~G~iv~ 293 (378)
T PLN02827 256 IK-RMT----GGGADYSF-E--CVGDT-------------------------GIATTALQSCSDGWGLTVT 293 (378)
T ss_pred HH-HHh----CCCCCEEE-E--CCCCh-------------------------HHHHHHHHhhccCCCEEEE
Confidence 00 000 12488776 3 66632 2477889999999 99974
No 308
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=78.18 E-value=9.3 Score=41.47 Aligned_cols=53 Identities=15% Similarity=0.179 Sum_probs=33.8
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC 236 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n 236 (646)
..+++|++||=.+| |+....++++.... +...|++.|.+++|++.+. .+|...
T Consensus 181 ~~~~~g~~VlV~G~--G~iG~~a~q~Ak~~-----G~~~Vi~~~~~~~~~~~a~----~~Ga~~ 233 (368)
T TIGR02818 181 AKVEEGDTVAVFGL--GGIGLSVIQGARMA-----KASRIIAIDINPAKFELAK----KLGATD 233 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHH----HhCCCe
Confidence 35788999998854 55444433333210 2337999999999987763 467643
No 309
>KOG0023|consensus
Probab=77.56 E-value=9.5 Score=41.17 Aligned_cols=59 Identities=12% Similarity=0.039 Sum_probs=42.3
Q ss_pred CCCCCCeEEEEcC-CCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCH-HHHHHHHHHHHHcCCCCeEEEecCCC
Q psy17365 174 DVQTHHKVLDMCA-APGSKTAQIIEMIHAADSNPVPSGLVVANDVDN-NRCYMLVHQAKRLNSPCAIITNHDAS 245 (646)
Q Consensus 174 d~~pg~~VLDmCA-aPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~-~Rl~~L~~n~~rlg~~ni~v~~~Da~ 245 (646)
++.||.+|-=.++ |-|+.+.++|.+|+ -+|+++|.+. +|- +.+++||.....+...|..
T Consensus 178 g~~pG~~vgI~GlGGLGh~aVq~AKAMG---------~rV~vis~~~~kke----ea~~~LGAd~fv~~~~d~d 238 (360)
T KOG0023|consen 178 GLGPGKWVGIVGLGGLGHMAVQYAKAMG---------MRVTVISTSSKKKE----EAIKSLGADVFVDSTEDPD 238 (360)
T ss_pred CCCCCcEEEEecCcccchHHHHHHHHhC---------cEEEEEeCCchhHH----HHHHhcCcceeEEecCCHH
Confidence 4678988655554 47899999999884 4899999987 442 3367799887666655543
No 310
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=75.72 E-value=6.2 Score=38.90 Aligned_cols=80 Identities=14% Similarity=0.063 Sum_probs=43.1
Q ss_pred CCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHccC
Q psy17365 264 FDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQG 343 (646)
Q Consensus 264 FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~~ 343 (646)
.|.|+.|||.-..-.. ....... ...............+..+.++|||||.++.. |+-..... .++..+++..+
T Consensus 1 VdliitDPPY~~~~~~-~~~~~~~--~~~~~~~y~~~~~~~~~~~~rvLk~~g~~~i~-~~~~~~~~-~~~~~~~~~~g- 74 (231)
T PF01555_consen 1 VDLIITDPPYNIGKDY-NNYFDYG--DNKNHEEYLEWMEEWLKECYRVLKPGGSIFIF-IDDREIAG-FLFELALEIFG- 74 (231)
T ss_dssp EEEEEE---TSSSCS------CSC--HCCHHHHHHHHHHHHHHHHHHHEEEEEEEEEE-E-CCEECT-HHHHHHHHHHT-
T ss_pred CCEEEECCCCCCCCCc-chhhhcc--CCCCHHHHHHHHHHHHHHHHhhcCCCeeEEEE-ecchhhhH-HHHHHHHHHhh-
Confidence 3789999996543321 0011100 12234455666788999999999999998754 55544333 35555566655
Q ss_pred cEEEee
Q psy17365 344 AVQLVD 349 (646)
Q Consensus 344 ~~elv~ 349 (646)
.+.+.+
T Consensus 75 ~~~~~~ 80 (231)
T PF01555_consen 75 GFFLRN 80 (231)
T ss_dssp T-EEEE
T ss_pred hhheec
Confidence 455544
No 311
>KOG1269|consensus
Probab=74.31 E-value=5.3 Score=43.92 Aligned_cols=110 Identities=24% Similarity=0.240 Sum_probs=71.5
Q ss_pred ccccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCC
Q psy17365 168 IPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASV 246 (646)
Q Consensus 168 l~~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~ 246 (646)
+..+....+|+..++|+.+|-|+-+..++.. ....++++|.++-.+..........++.+ ..+..+|...
T Consensus 101 ~~~l~~~~~~~~~~~~~~~g~~~~~~~i~~f---------~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~ 171 (364)
T KOG1269|consen 101 IVALRESCFPGSKVLDVGTGVGGPSRYIAVF---------KKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGK 171 (364)
T ss_pred hHHHhhcCcccccccccCcCcCchhHHHHHh---------ccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhc
Confidence 4444556788989999999999999988765 24567888888887766655555444443 2224555544
Q ss_pred CccccccCCCCCCCCCCCCeeec-CCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE
Q psy17365 247 MPNVLYTDADGNKVPMKFDRVLC-DVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319 (646)
Q Consensus 247 ~p~~~~~~~~g~~~~~~FD~IL~-D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV 319 (646)
.| .....||.|-+ |+-|-. |+. ...+.+..+.+||||..+
T Consensus 172 ~~----------fedn~fd~v~~ld~~~~~-------~~~----------------~~~y~Ei~rv~kpGG~~i 212 (364)
T KOG1269|consen 172 MP----------FEDNTFDGVRFLEVVCHA-------PDL----------------EKVYAEIYRVLKPGGLFI 212 (364)
T ss_pred CC----------CCccccCcEEEEeecccC-------CcH----------------HHHHHHHhcccCCCceEE
Confidence 33 22356886643 443322 121 256788888999999876
No 312
>PF07669 Eco57I: Eco57I restriction-modification methylase; InterPro: IPR011639 This entry contains restriction modification methylases, which in the case of endonuclease Eco57I is found adjacent to the DNA cleavage domain, which recognises asymmetric DNA sequence 5'-CTGAAG [, ]. The methylase causes specific methylation on A-5 on one strand, the other strand being methylated by the Eco57IB methylase []. ; GO: 0003677 DNA binding, 0003824 catalytic activity, 0006304 DNA modification
Probab=74.11 E-value=11 Score=33.88 Aligned_cols=79 Identities=13% Similarity=0.273 Sum_probs=49.1
Q ss_pred CCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC-CC-ccccHHHHHHHHHH
Q psy17365 263 KFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS-LN-PLEDEAVIQRLIVE 340 (646)
Q Consensus 263 ~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS-l~-p~ENE~VV~~~L~~ 340 (646)
+||.|+-+||.............. ..-..+..-.+..|+++| +|.+.|-|-+ +. ..+.-....+.|-+
T Consensus 2 kFD~VIGNPPY~~~~~~~~~~~~~--------~~~~dlY~~Fie~~~~ll--~G~~~~I~P~~~l~~~~~~~~lR~~l~~ 71 (106)
T PF07669_consen 2 KFDVVIGNPPYIKIKSLSKKKKKK--------KKKSDLYILFIEKSLNLL--NGYLSFITPNSFLKSGKYGKKLRKFLLN 71 (106)
T ss_pred CcCEEEECCCChhhccccchhhcc--------cccCcHHHHHHHHHHHHh--CCeEEEEeChHHhCcCchHHHHHHHHhc
Confidence 599999999987655322111110 013445556788999999 8999887765 44 45566666766655
Q ss_pred ccCcEEEeecc
Q psy17365 341 TQGAVQLVDVS 351 (646)
Q Consensus 341 ~~~~~elv~~~ 351 (646)
...-..+++..
T Consensus 72 ~~~i~~i~~f~ 82 (106)
T PF07669_consen 72 NTNIKKIIDFG 82 (106)
T ss_pred CCCeeEEEECC
Confidence 44334555543
No 313
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=73.99 E-value=20 Score=38.05 Aligned_cols=102 Identities=16% Similarity=0.194 Sum_probs=58.3
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+.+++|++||=.+ .|+....++++.... +...|++.+.+.+|.+.+ +.+|...+ ++........+..
T Consensus 159 ~~~~~g~~vlV~G--~G~vG~~~~~~ak~~-----G~~~vi~~~~~~~~~~~~----~~~ga~~~--i~~~~~~~~~~~~ 225 (339)
T cd08239 159 VGVSGRDTVLVVG--AGPVGLGALMLARAL-----GAEDVIGVDPSPERLELA----KALGADFV--INSGQDDVQEIRE 225 (339)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHH----HHhCCCEE--EcCCcchHHHHHH
Confidence 4678899998874 366665555544321 233499999999987765 34676432 2211111100000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
... ...||.|+ | |+|.. ..+..++++|+++|+++.
T Consensus 226 -~~~----~~~~d~vi-d--~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 260 (339)
T cd08239 226 -LTS----GAGADVAI-E--CSGNT-------------------------AARRLALEAVRPWGRLVL 260 (339)
T ss_pred -HhC----CCCCCEEE-E--CCCCH-------------------------HHHHHHHHHhhcCCEEEE
Confidence 000 13588776 3 44432 246778899999999884
No 314
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=73.74 E-value=15 Score=39.66 Aligned_cols=103 Identities=17% Similarity=0.190 Sum_probs=57.5
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+++|+.||=.++ |+....++++.... +...|++.|.++.+...+. .+|...+ +..+-..+.....
T Consensus 182 ~~~~~g~~vlI~g~--g~vG~~~~~la~~~-----G~~~v~~~~~~~~k~~~~~----~~g~~~~--i~~~~~~~~~~v~ 248 (365)
T cd08278 182 LKPRPGSSIAVFGA--GAVGLAAVMAAKIA-----GCTTIIAVDIVDSRLELAK----ELGATHV--INPKEEDLVAAIR 248 (365)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCeEEEEeCCHHHHHHHH----HcCCcEE--ecCCCcCHHHHHH
Confidence 35678999988743 55444333332211 2446999999999877654 3565322 2221111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
... ...+|.|+- |+|.+ ..+..+++.|+++|++|..
T Consensus 249 -~~~----~~~~d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 284 (365)
T cd08278 249 -EIT----GGGVDYALD---TTGVP-------------------------AVIEQAVDALAPRGTLALV 284 (365)
T ss_pred -HHh----CCCCcEEEE---CCCCc-------------------------HHHHHHHHHhccCCEEEEe
Confidence 000 135887763 55533 2467889999999998843
No 315
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=72.98 E-value=16 Score=39.41 Aligned_cols=100 Identities=19% Similarity=0.215 Sum_probs=58.2
Q ss_pred cCCCCCCeEEEEcC--CCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCC-CCCcc
Q psy17365 173 LDVQTHHKVLDMCA--APGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDA-SVMPN 249 (646)
Q Consensus 173 Ld~~pg~~VLDmCA--aPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da-~~~p~ 249 (646)
..+++|++||=.+| +-|..+.|+|..+ ...|++.+.+..+++.++. .+|...+. +.+. ..+..
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~---------G~~Vi~~~~~~~k~~~~~~---~lGa~~vi--~~~~~~~~~~ 219 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLH---------GCYVVGSAGSSQKVDLLKN---KLGFDEAF--NYKEEPDLDA 219 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHc---------CCEEEEEcCCHHHHHHHHH---hcCCCEEE--ECCCcccHHH
Confidence 35789999987765 2455566666654 2368999999888766542 36765332 2211 11111
Q ss_pred ccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 250 VLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 250 ~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
... ... ...+|.|+ | |+|. ..+..+++.|++||++|.
T Consensus 220 ~i~-~~~----~~gvD~v~-d--~vG~--------------------------~~~~~~~~~l~~~G~iv~ 256 (348)
T PLN03154 220 ALK-RYF----PEGIDIYF-D--NVGG--------------------------DMLDAALLNMKIHGRIAV 256 (348)
T ss_pred HHH-HHC----CCCcEEEE-E--CCCH--------------------------HHHHHHHHHhccCCEEEE
Confidence 000 000 12478776 4 4441 246778899999999873
No 316
>KOG3045|consensus
Probab=72.40 E-value=10 Score=39.81 Aligned_cols=103 Identities=15% Similarity=0.117 Sum_probs=63.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
...|-|++||-+- ||+. -.-.|++.|+.+ .|-.|+..|.+..|..
T Consensus 181 ~~vIaD~GCGEak----iA~~---------~~~kV~SfDL~a---------------~~~~V~~cDm~~vPl~------- 225 (325)
T KOG3045|consen 181 NIVIADFGCGEAK----IASS---------ERHKVHSFDLVA---------------VNERVIACDMRNVPLE------- 225 (325)
T ss_pred ceEEEecccchhh----hhhc---------cccceeeeeeec---------------CCCceeeccccCCcCc-------
Confidence 4568899999864 3432 134688888643 2345677888876631
Q ss_pred CCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHH
Q psy17365 258 NKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRL 337 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~ 337 (646)
.+..|++++-- |-.|| .| ...+.+|.++||+||.|-..--+ +...+-......
T Consensus 226 ---d~svDvaV~CL--SLMgt---------n~------------~df~kEa~RiLk~gG~l~IAEv~-SRf~dv~~f~r~ 278 (325)
T KOG3045|consen 226 ---DESVDVAVFCL--SLMGT---------NL------------ADFIKEANRILKPGGLLYIAEVK-SRFSDVKGFVRA 278 (325)
T ss_pred ---cCcccEEEeeH--hhhcc---------cH------------HHHHHHHHHHhccCceEEEEehh-hhcccHHHHHHH
Confidence 25789887622 33343 11 36799999999999977654322 233343345555
Q ss_pred HHHcc
Q psy17365 338 IVETQ 342 (646)
Q Consensus 338 L~~~~ 342 (646)
|...|
T Consensus 279 l~~lG 283 (325)
T KOG3045|consen 279 LTKLG 283 (325)
T ss_pred HHHcC
Confidence 66665
No 317
>PRK12939 short chain dehydrogenase; Provisional
Probab=71.72 E-value=22 Score=35.53 Aligned_cols=62 Identities=18% Similarity=0.054 Sum_probs=42.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVM 247 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~ 247 (646)
+.+|| +..|.|+...+++..+... ...|++.+.++..+..+...++..+ .++.+...|.+..
T Consensus 7 ~~~vl-ItGa~g~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~ 68 (250)
T PRK12939 7 GKRAL-VTGAARGLGAAFAEALAEA------GATVAFNDGLAAEARELAAALEAAG-GRAHAIAADLADP 68 (250)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEccCCCH
Confidence 55676 5556788999999887522 2368888888887776666555444 3577778887653
No 318
>KOG1197|consensus
Probab=71.65 E-value=13 Score=39.13 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=35.4
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQ 228 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n 228 (646)
+-.++|||.|| +.||-||..+.+.+++.. -...++|.-.+.+..+.+++|
T Consensus 141 ~y~vkpGhtVl-vhaAAGGVGlll~Ql~ra------~~a~tI~~asTaeK~~~aken 190 (336)
T KOG1197|consen 141 AYNVKPGHTVL-VHAAAGGVGLLLCQLLRA------VGAHTIATASTAEKHEIAKEN 190 (336)
T ss_pred hcCCCCCCEEE-EEeccccHHHHHHHHHHh------cCcEEEEEeccHHHHHHHHhc
Confidence 34799999998 456667777777777653 245778887777777766654
No 319
>KOG1501|consensus
Probab=71.64 E-value=8 Score=43.23 Aligned_cols=59 Identities=14% Similarity=0.053 Sum_probs=48.2
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVM 247 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~ 247 (646)
.|||+++|+|-.+..++... .-.|+|+|+-....+.+++-+...|. ++|.+++.-.++.
T Consensus 69 ~vLdigtGTGLLSmMAvrag---------aD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev 128 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAG---------ADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEV 128 (636)
T ss_pred EEEEccCCccHHHHHHHHhc---------CCeEEeehhhchHHHHHHHHHhcCCCccceeeecccccee
Confidence 59999999998888776653 44799999999999999999999986 4688887665543
No 320
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=71.19 E-value=21 Score=35.80 Aligned_cols=87 Identities=11% Similarity=0.011 Sum_probs=52.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+|| +..|+|+...+++..+... ...|++.+.++..+..+...++..+ .++.++..|......+......-
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~ 75 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKE------GAKVVIADLNDEAAAAAAEALQKAG-GKAIGVAMDVTDEEAINAGIDYA 75 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHH
Confidence 34566 5566789999999887521 3378899999888877766666544 34667777876532211000000
Q ss_pred CCCCCCCCeeecCCC
Q psy17365 258 NKVPMKFDRVLCDVP 272 (646)
Q Consensus 258 ~~~~~~FD~IL~D~P 272 (646)
......+|.|+..+.
T Consensus 76 ~~~~~~~d~vi~~a~ 90 (258)
T PRK12429 76 VETFGGVDILVNNAG 90 (258)
T ss_pred HHHcCCCCEEEECCC
Confidence 001135898888553
No 321
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=71.12 E-value=6.8 Score=43.37 Aligned_cols=50 Identities=16% Similarity=0.201 Sum_probs=37.2
Q ss_pred ccccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy17365 170 PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQA 229 (646)
Q Consensus 170 ~~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~ 229 (646)
-.+|++.|+++||=+++| |.-++.++.. +...|+|+|+|+.-.++++=.+
T Consensus 28 ~~aL~i~~~d~vl~ItSa-G~N~L~yL~~---------~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 28 MEALNIGPDDRVLTITSA-GCNALDYLLA---------GPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHHhCCCCCCeEEEEccC-CchHHHHHhc---------CCceEEEEeCCHHHHHHHHHHH
Confidence 346899999999999876 5555554322 4679999999999888776443
No 322
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=69.21 E-value=16 Score=38.64 Aligned_cols=100 Identities=21% Similarity=0.236 Sum_probs=55.6
Q ss_pred CCCCC--CeEEEEcC--CCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcc
Q psy17365 174 DVQTH--HKVLDMCA--APGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPN 249 (646)
Q Consensus 174 d~~pg--~~VLDmCA--aPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~ 249 (646)
.+++| ++||=.+| |-|..+.|+|..+ +...|++.+.++++.+.+.+ .+|...+. ..+...+..
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~--------G~~~Vi~~~~s~~~~~~~~~---~lGa~~vi--~~~~~~~~~ 215 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLL--------GCSRVVGICGSDEKCQLLKS---ELGFDAAI--NYKTDNVAE 215 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHc--------CCCEEEEEcCCHHHHHHHHH---hcCCcEEE--ECCCCCHHH
Confidence 45666 88886654 2344445555543 12369999999888776654 26765432 222112211
Q ss_pred ccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 250 VLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 250 ~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
... ... ...+|.|+ | |+|. ..+..+++.|++||++|-
T Consensus 216 ~i~-~~~----~~gvd~vi-d--~~g~--------------------------~~~~~~~~~l~~~G~iv~ 252 (345)
T cd08293 216 RLR-ELC----PEGVDVYF-D--NVGG--------------------------EISDTVISQMNENSHIIL 252 (345)
T ss_pred HHH-HHC----CCCceEEE-E--CCCc--------------------------HHHHHHHHHhccCCEEEE
Confidence 100 000 13588777 4 3332 124677889999999883
No 323
>PRK06181 short chain dehydrogenase; Provisional
Probab=68.45 E-value=30 Score=35.08 Aligned_cols=60 Identities=13% Similarity=0.118 Sum_probs=41.8
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVM 247 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~ 247 (646)
+|| +.-|+|+...+++..+.. ....|++.+.+...++.+.+.++..+. ++.+...|....
T Consensus 3 ~vl-VtGasg~iG~~la~~l~~------~g~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~ 62 (263)
T PRK06181 3 VVI-ITGASEGIGRALAVRLAR------AGAQLVLAARNETRLASLAQELADHGG-EALVVPTDVSDA 62 (263)
T ss_pred EEE-EecCCcHHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence 455 455678888888887652 235899999998777766666665553 567778887664
No 324
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=68.05 E-value=37 Score=36.61 Aligned_cols=105 Identities=14% Similarity=0.202 Sum_probs=58.5
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+++|++||=.+ .|+....++++.... +...|+++|.+..|++.+. .+|...+.....+...+.....
T Consensus 180 ~~~~~g~~vlV~G--~g~vG~~~~~~a~~~-----G~~~Vi~~~~~~~~~~~~~----~~ga~~~i~~~~~~~~~~~~~~ 248 (365)
T cd08277 180 AKVEPGSTVAVFG--LGAVGLSAIMGAKIA-----GASRIIGVDINEDKFEKAK----EFGATDFINPKDSDKPVSEVIR 248 (365)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc-----CCCeEEEEeCCHHHHHHHH----HcCCCcEeccccccchHHHHHH
Confidence 3578899998774 366555544443211 2337999999999987763 4676433222111111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccC-CeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVG-GKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpG-G~LVYS 321 (646)
... ...+|.|+ | |+|.+ ..+..+++.+++| |++|..
T Consensus 249 -~~~----~~g~d~vi-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~ 285 (365)
T cd08277 249 -EMT----GGGVDYSF-E--CTGNA-------------------------DLMNEALESTKLGWGVSVVV 285 (365)
T ss_pred -HHh----CCCCCEEE-E--CCCCh-------------------------HHHHHHHHhcccCCCEEEEE
Confidence 000 12488776 3 55532 3577888999886 988754
No 325
>PRK05599 hypothetical protein; Provisional
Probab=67.93 E-value=24 Score=35.76 Aligned_cols=83 Identities=8% Similarity=0.041 Sum_probs=51.7
Q ss_pred EEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCC
Q psy17365 181 VLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKV 260 (646)
Q Consensus 181 VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~ 260 (646)
||= .-|.+|....+|..+. ....|+..+.+..+++.+.+.++..|...+.++..|.............-...
T Consensus 3 vlI-tGas~GIG~aia~~l~-------~g~~Vil~~r~~~~~~~~~~~l~~~~~~~~~~~~~Dv~d~~~v~~~~~~~~~~ 74 (246)
T PRK05599 3 ILI-LGGTSDIAGEIATLLC-------HGEDVVLAARRPEAAQGLASDLRQRGATSVHVLSFDAQDLDTHRELVKQTQEL 74 (246)
T ss_pred EEE-EeCccHHHHHHHHHHh-------CCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEcccCCHHHHHHHHHHHHHh
Confidence 453 3456778888888875 23578888999999888888777666555677788887643221000000011
Q ss_pred CCCCCeeecCC
Q psy17365 261 PMKFDRVLCDV 271 (646)
Q Consensus 261 ~~~FD~IL~D~ 271 (646)
....|.++..+
T Consensus 75 ~g~id~lv~na 85 (246)
T PRK05599 75 AGEISLAVVAF 85 (246)
T ss_pred cCCCCEEEEec
Confidence 24688888754
No 326
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=67.70 E-value=19 Score=37.92 Aligned_cols=117 Identities=19% Similarity=0.147 Sum_probs=61.3
Q ss_pred eEEEEcCCC--chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC--eEEEecCCCCCccccccC-
Q psy17365 180 KVLDMCAAP--GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC--AIITNHDASVMPNVLYTD- 254 (646)
Q Consensus 180 ~VLDmCAaP--GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n--i~v~~~Da~~~p~~~~~~- 254 (646)
..||++||- -+-+=++|+... |..+|+-+|.++--+...+..+. +.++ ..++.+|.+....+....
T Consensus 71 QFLDlGsGlPT~~nvHevAq~~~-------P~aRVVYVD~DPvv~ah~ralL~--~~~~g~t~~v~aD~r~p~~iL~~p~ 141 (267)
T PF04672_consen 71 QFLDLGSGLPTAGNVHEVAQRVA-------PDARVVYVDNDPVVLAHARALLA--DNPRGRTAYVQADLRDPEAILAHPE 141 (267)
T ss_dssp EEEEET--S--SS-HHHHHHHH--------TT-EEEEEESSHHHHHCCHHHHT--T-TTSEEEEEE--TT-HHHHHCSHH
T ss_pred eEEEcccCCCCCCCHhHHHHhhC-------CCceEEEECCCchHHHHHHhhhc--CCCCccEEEEeCCCCCHHHHhcCHH
Confidence 588998882 234667888775 78999999999987665544433 3344 788999988754433200
Q ss_pred CCCC-CCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCC
Q psy17365 255 ADGN-KVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSL 325 (646)
Q Consensus 255 ~~g~-~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl 325 (646)
..+. ......-++|+ |++..-+|- + --..|+..-...|.||.+|+.|..|-
T Consensus 142 ~~~~lD~~rPVavll~-------~vLh~v~D~------~-------dp~~iv~~l~d~lapGS~L~ish~t~ 193 (267)
T PF04672_consen 142 VRGLLDFDRPVAVLLV-------AVLHFVPDD------D-------DPAGIVARLRDALAPGSYLAISHATD 193 (267)
T ss_dssp HHCC--TTS--EEEEC-------T-GGGS-CG------C-------THHHHHHHHHCCS-TT-EEEEEEEB-
T ss_pred HHhcCCCCCCeeeeee-------eeeccCCCc------c-------CHHHHHHHHHHhCCCCceEEEEecCC
Confidence 0000 00112223333 333333331 0 12378888899999999999997764
No 327
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=67.32 E-value=31 Score=36.40 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=28.5
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHH
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLV 226 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~ 226 (646)
..+++|++||-.++ |+....+++..... +.+.|++++.+..+...++
T Consensus 163 ~~~~~~~~VlI~g~--g~vg~~~iqlak~~-----g~~~v~~~~~~~~~~~~~~ 209 (347)
T cd05278 163 AGIKPGSTVAVIGA--GPVGLCAVAGARLL-----GAARIIAVDSNPERLDLAK 209 (347)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCEEEEEeCCHHHHHHHH
Confidence 45678999999543 54443333333210 2347888888888876554
No 328
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=66.92 E-value=31 Score=34.71 Aligned_cols=89 Identities=11% Similarity=0.041 Sum_probs=54.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+|| +..|.|+...+++..+... ...|++++.++.+...+.+.+...+. .+.++..|.+...........-
T Consensus 7 ~~~vl-ItGasg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~ 78 (262)
T PRK13394 7 GKTAV-VTGAASGIGKEIALELARA------GAAVAIADLNQDGANAVADEINKAGG-KAIGVAMDVTNEDAVNAGIDKV 78 (262)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHC------CCeEEEEeCChHHHHHHHHHHHhcCc-eEEEEECCCCCHHHHHHHHHHH
Confidence 45666 6667788999998887522 23788899999888777777765553 4666778876543221000000
Q ss_pred CCCCCCCCeeecCCCCC
Q psy17365 258 NKVPMKFDRVLCDVPCT 274 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCS 274 (646)
.......|.|+..+-+.
T Consensus 79 ~~~~~~~d~vi~~ag~~ 95 (262)
T PRK13394 79 AERFGSVDILVSNAGIQ 95 (262)
T ss_pred HHHcCCCCEEEECCccC
Confidence 00123578888765443
No 329
>KOG4174|consensus
Probab=66.67 E-value=82 Score=33.10 Aligned_cols=133 Identities=17% Similarity=0.189 Sum_probs=80.4
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHH------HHHHHHH---HHHcCCCCeEEEecCC
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNR------CYMLVHQ---AKRLNSPCAIITNHDA 244 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~R------l~~L~~n---~~rlg~~ni~v~~~Da 244 (646)
+-...++||-++-|-=+.+..|+...+. .+|.|+|...+.+- .--...| ++++|.. ++...|+
T Consensus 53 ~~s~~~~ill~gEgdFSfs~sl~~~~g~------sa~ni~atSlDsk~~dl~~KY~~~~~nv~~Lk~lG~~--I~h~Vdv 124 (282)
T KOG4174|consen 53 PYSKKQKILLVGEGDFSFSLSLAPHFGR------SAGNITATSLDSKEFDLKQKYPDAKENVEALKRLGGT--ILHGVDV 124 (282)
T ss_pred eccccccEEEecccchhhHHHHHHHhCc------cccceeeeeccchhhhhhhcccchHHHHHHHHHcCCc--eEecccc
Confidence 3345678888877766777777766541 35677776655443 1122334 5677764 3445565
Q ss_pred CCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhc-cCCeEEEEcC
Q psy17365 245 SVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLA-VGGKIAYSTC 323 (646)
Q Consensus 245 ~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLK-pGG~LVYSTC 323 (646)
+.+-... ......||+|+.+-|-+|.|.- +..+. .-+.....+-+..|..|-++|+ ..|.|+.+--
T Consensus 125 ~sl~~~~------~~~~~~~d~IiFNFPH~G~g~~-~e~d~------~~i~~~qkL~rgFle~akemL~~edGeI~itlk 191 (282)
T KOG4174|consen 125 TSLKFHA------DLRLQRYDNIIFNFPHSGKGIK-FEQDR------NIIPLHQKLFRGFLESAKEMLKDEDGEIHITLK 191 (282)
T ss_pred eeEEecc------cccccccceEEEcCCCCCCCcc-cccch------HHHHHHHHHHHHHHHHHHHHHHhcCCcEEEEec
Confidence 5542211 1234689999999999999964 22221 1111345667788889999999 7787776543
Q ss_pred CCCc
Q psy17365 324 SLNP 327 (646)
Q Consensus 324 Sl~p 327 (646)
+..|
T Consensus 192 ~t~P 195 (282)
T KOG4174|consen 192 TTYP 195 (282)
T ss_pred cCCC
Confidence 3333
No 330
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=66.10 E-value=24 Score=37.50 Aligned_cols=104 Identities=19% Similarity=0.191 Sum_probs=56.5
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCC---c
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVM---P 248 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~---p 248 (646)
...+++|++||=.++ |+....++++.... +...|++.+.+.++...+.+ +|...+. ..+-..+ .
T Consensus 157 ~~~~~~g~~vlI~g~--g~vG~~a~~lak~~-----G~~~v~~~~~~~~~~~~~~~----~g~~~vi--~~~~~~~~~~~ 223 (343)
T cd05285 157 RAGVRPGDTVLVFGA--GPIGLLTAAVAKAF-----GATKVVVTDIDPSRLEFAKE----LGATHTV--NVRTEDTPESA 223 (343)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHHHH----cCCcEEe--ccccccchhHH
Confidence 456789999988643 55444444443310 22248888888888766633 4655432 2111111 1
Q ss_pred cccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 249 NVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 249 ~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
.... ... ....||.|+- |+|.. ..+..+++.|+++|++|.
T Consensus 224 ~~~~-~~~---~~~~~d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 263 (343)
T cd05285 224 EKIA-ELL---GGKGPDVVIE---CTGAE-------------------------SCIQTAIYATRPGGTVVL 263 (343)
T ss_pred HHHH-HHh---CCCCCCEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEE
Confidence 0000 000 0134887763 54422 246778899999999874
No 331
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=65.02 E-value=27 Score=36.88 Aligned_cols=103 Identities=17% Similarity=0.223 Sum_probs=54.8
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
.+.+++|.+||-.++ |+....+++..... +...|++.+.+..+...+. .+|...+ +..+......+.
T Consensus 154 ~~~~~~~~~vlI~g~--g~~g~~~~~lA~~~-----G~~~v~~~~~~~~~~~~l~----~~g~~~~--~~~~~~~~~~~~ 220 (343)
T cd08236 154 LAGITLGDTVVVIGA--GTIGLLAIQWLKIL-----GAKRVIAVDIDDEKLAVAR----ELGADDT--INPKEEDVEKVR 220 (343)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHH----HcCCCEE--ecCccccHHHHH
Confidence 446778999999843 55443333333210 2334888888877766553 3565322 221111111110
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
. ... ...||.|+ .|+|.+ ..+..+++.|+++|+++.
T Consensus 221 ~-~~~----~~~~d~vl---d~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 256 (343)
T cd08236 221 E-LTE----GRGADLVI---EAAGSP-------------------------ATIEQALALARPGGKVVL 256 (343)
T ss_pred H-HhC----CCCCCEEE---ECCCCH-------------------------HHHHHHHHHhhcCCEEEE
Confidence 0 001 12488887 255432 346778899999999874
No 332
>PRK07576 short chain dehydrogenase; Provisional
Probab=64.89 E-value=40 Score=34.48 Aligned_cols=87 Identities=10% Similarity=0.000 Sum_probs=51.0
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
++.+||=.+ |.|+...+++..+.. ....|++.+.+...+..+...+...+. .+.++..|.+........-..
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~------~G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~i~~~~~~ 79 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFAR------AGANVAVASRSQEKVDAAVAQLQQAGP-EGLGVSADVRDYAAVEAAFAQ 79 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEECCCCCHHHHHHHHHH
Confidence 466777666 577888888887752 133689999988877666555555443 456677787653221100000
Q ss_pred CCCCCCCCCeeecCC
Q psy17365 257 GNKVPMKFDRVLCDV 271 (646)
Q Consensus 257 g~~~~~~FD~IL~D~ 271 (646)
-......+|.|+..+
T Consensus 80 ~~~~~~~iD~vi~~a 94 (264)
T PRK07576 80 IADEFGPIDVLVSGA 94 (264)
T ss_pred HHHHcCCCCEEEECC
Confidence 000113579988765
No 333
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=64.69 E-value=68 Score=37.55 Aligned_cols=84 Identities=17% Similarity=0.093 Sum_probs=54.6
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC--------CCeEEEecCC
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS--------PCAIITNHDA 244 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~--------~ni~v~~~Da 244 (646)
++.+.|..||=.| |.|+...++++.+.. ....|++.+.+..++..+...+..+++ .++.++.+|.
T Consensus 75 ~~~~~gKvVLVTG-ATGgIG~aLAr~LLk------~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDL 147 (576)
T PLN03209 75 LDTKDEDLAFVAG-ATGKVGSRTVRELLK------LGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDL 147 (576)
T ss_pred cccCCCCEEEEEC-CCCHHHHHHHHHHHH------CCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecC
Confidence 4566777777555 568889998887752 134788999999888776665544221 2477888888
Q ss_pred CCCccccccCCCCCCCCCCCCeeecC
Q psy17365 245 SVMPNVLYTDADGNKVPMKFDRVLCD 270 (646)
Q Consensus 245 ~~~p~~~~~~~~g~~~~~~FD~IL~D 270 (646)
.....+. ......|.|++.
T Consensus 148 tD~esI~-------~aLggiDiVVn~ 166 (576)
T PLN03209 148 EKPDQIG-------PALGNASVVICC 166 (576)
T ss_pred CCHHHHH-------HHhcCCCEEEEc
Confidence 7643221 112457888874
No 334
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.26 E-value=40 Score=34.38 Aligned_cols=134 Identities=10% Similarity=-0.005 Sum_probs=67.0
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.|..||=.+|++ +|....+|..+... ...|+..+.+.+..+.+.+..+.++ .+.++..|.+..........
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~------G~~v~l~~r~~~~~~~~~~~~~~~~--~~~~~~~D~~~~~~v~~~~~ 80 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRAL------GAELAVTYLNDKARPYVEPLAEELD--APIFLPLDVREPGQLEAVFA 80 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHc------CCEEEEEeCChhhHHHHHHHHHhhc--cceEEecCcCCHHHHHHHHH
Confidence 366889889888 48888888877521 2367777877654433444333333 24456678765432110000
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhh----hHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNN----LHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~----l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
.-.......|.++.++-....... ...+...+.++... ...-...+.+.++..++.+|.+|..
T Consensus 81 ~~~~~~g~ld~lv~nAg~~~~~~~---~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~i 147 (258)
T PRK07533 81 RIAEEWGRLDFLLHSIAFAPKEDL---HGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTM 147 (258)
T ss_pred HHHHHcCCCCEEEEcCccCCcccc---cCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEE
Confidence 000112468988886632110000 00001111111111 1122334566677777778888754
No 335
>PRK12937 short chain dehydrogenase; Provisional
Probab=64.06 E-value=37 Score=33.81 Aligned_cols=136 Identities=15% Similarity=0.084 Sum_probs=67.6
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcC-CHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDV-DNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Di-s~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
+..|| +.-|.|+...++++.+... ...|+.... +..+...+.+.+...+ .++.++..|.+........-..
T Consensus 5 ~~~vl-ItG~~~~iG~~la~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~ 76 (245)
T PRK12937 5 NKVAI-VTGASRGIGAAIARRLAAD------GFAVAVNYAGSAAAADELVAEIEAAG-GRAIAVQADVADAAAVTRLFDA 76 (245)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHC------CCEEEEecCCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHH
Confidence 33454 4455788899999887522 224554443 4455566666665554 3467777887653221100000
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
-.......|.|+..+.-.+.+.+...+. ..|. ........-...++..+++.++.+|.+|+.+++
T Consensus 77 ~~~~~~~id~vi~~ag~~~~~~~~~~~~--~~~~-~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss~ 141 (245)
T PRK12937 77 AETAFGRIDVLVNNAGVMPLGTIADFDL--EDFD-RTIATNLRGAFVVLREAARHLGQGGRIINLSTS 141 (245)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCH--HHHH-HHHhhhchHHHHHHHHHHHHhccCcEEEEEeec
Confidence 0001235788887653211111111110 0111 001111122335667777777888999998865
No 336
>PRK08324 short chain dehydrogenase; Validated
Probab=63.87 E-value=25 Score=41.81 Aligned_cols=134 Identities=15% Similarity=0.159 Sum_probs=70.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
+|..||=. -|.|+...+++..+... ...|+++|.+..++..+...+... .++.++..|.+...........
T Consensus 421 ~gk~vLVT-GasggIG~~la~~L~~~------Ga~Vvl~~r~~~~~~~~~~~l~~~--~~v~~v~~Dvtd~~~v~~~~~~ 491 (681)
T PRK08324 421 AGKVALVT-GAAGGIGKATAKRLAAE------GACVVLADLDEEAAEAAAAELGGP--DRALGVACDVTDEAAVQAAFEE 491 (681)
T ss_pred CCCEEEEe-cCCCHHHHHHHHHHHHC------cCEEEEEeCCHHHHHHHHHHHhcc--CcEEEEEecCCCHHHHHHHHHH
Confidence 46677744 44678888888877521 237999999998877665544322 3566777787653221100000
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhcc---CCeEEEEc
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAV---GGKIAYST 322 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKp---GG~LVYST 322 (646)
.......+|.|+..+-.+..+.+...+. ..|.. .......-...+++.++++++. ||.+|+.+
T Consensus 492 ~~~~~g~iDvvI~~AG~~~~~~~~~~~~--~~~~~-~~~~N~~g~~~l~~~~~~~l~~~~~~g~iV~vs 557 (681)
T PRK08324 492 AALAFGGVDIVVSNAGIAISGPIEETSD--EDWRR-SFDVNATGHFLVAREAVRIMKAQGLGGSIVFIA 557 (681)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCH--HHHHH-HHHHHhHHHHHHHHHHHHHHHhcCCCcEEEEEC
Confidence 0001235898887654333332211110 01110 0111122234567777777776 68777654
No 337
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=63.81 E-value=21 Score=40.65 Aligned_cols=42 Identities=17% Similarity=0.228 Sum_probs=27.3
Q ss_pred HHHHHHHHHhhccCCeEEEEcCCCCccccHHHHH---HHHHHccCcEEEeec
Q psy17365 302 YRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQ---RLIVETQGAVQLVDV 350 (646)
Q Consensus 302 ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~---~~L~~~~~~~elv~~ 350 (646)
..||-+.-++|+|||.++.- ++.+++. .++........+.+.
T Consensus 447 ~~illEmDRILRP~G~~iiR-------D~~~vl~~v~~i~~~lrW~~~~~d~ 491 (506)
T PF03141_consen 447 EDILLEMDRILRPGGWVIIR-------DTVDVLEKVKKIAKSLRWEVRIHDT 491 (506)
T ss_pred HHHHHHhHhhcCCCceEEEe-------ccHHHHHHHHHHHHhCcceEEEEec
Confidence 57888999999999999865 3444444 334444444455544
No 338
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=63.71 E-value=43 Score=36.21 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=34.7
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC 236 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n 236 (646)
..+++|++||=.++ |+....++++.... +...|++.|.+..|++.++ .+|...
T Consensus 182 ~~~~~g~~VlV~G~--G~vG~~a~~~ak~~-----G~~~vi~~~~~~~~~~~~~----~lGa~~ 234 (368)
T cd08300 182 AKVEPGSTVAVFGL--GAVGLAVIQGAKAA-----GASRIIGIDINPDKFELAK----KFGATD 234 (368)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCeEEEEeCCHHHHHHHH----HcCCCE
Confidence 45788999988753 55555544443311 2347999999999987663 467643
No 339
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=63.37 E-value=47 Score=35.03 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=15.2
Q ss_pred HHHHHHHhhccCCeEEEE
Q psy17365 304 IVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 304 IL~~A~~lLKpGG~LVYS 321 (646)
.+..++++|++||++++.
T Consensus 213 ~~~~~~~~l~~~G~iv~~ 230 (308)
T TIGR01202 213 LIDTLVRRLAKGGEIVLA 230 (308)
T ss_pred HHHHHHHhhhcCcEEEEE
Confidence 467889999999999853
No 340
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=63.22 E-value=48 Score=33.80 Aligned_cols=48 Identities=19% Similarity=0.065 Sum_probs=28.7
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHH
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLV 226 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~ 226 (646)
...+++|++||=.++ |+....+++..... +...|++.+.+..++..+.
T Consensus 92 ~~~~~~g~~vlI~g~--g~vg~~~i~~a~~~-----g~~~vi~~~~~~~~~~~~~ 139 (277)
T cd08255 92 DAEPRLGERVAVVGL--GLVGLLAAQLAKAA-----GAREVVGVDPDAARRELAE 139 (277)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCcEEEECCCHHHHHHHH
Confidence 346788999988743 55443333332210 2224899999999876443
No 341
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=62.90 E-value=49 Score=34.54 Aligned_cols=101 Identities=15% Similarity=0.144 Sum_probs=55.6
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+++|++||=.+ |.|+....++++... -...|++.+.+.++.+.++ .+|...+ +......+.....
T Consensus 139 ~~~~~g~~vlI~g-a~g~vG~~aiqlA~~------~G~~vi~~~~s~~~~~~l~----~~Ga~~v--i~~~~~~~~~~v~ 205 (329)
T cd08294 139 CKPKAGETVVVNG-AAGAVGSLVGQIAKI------KGCKVIGCAGSDDKVAWLK----ELGFDAV--FNYKTVSLEEALK 205 (329)
T ss_pred cCCCCCCEEEEec-CccHHHHHHHHHHHH------cCCEEEEEeCCHHHHHHHH----HcCCCEE--EeCCCccHHHHHH
Confidence 4578999998554 344444443333321 1236899998888877664 3676433 2222111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
... ...+|.|+ | |+|. ..+..+++.|+++|++|.
T Consensus 206 -~~~----~~gvd~vl-d--~~g~--------------------------~~~~~~~~~l~~~G~iv~ 239 (329)
T cd08294 206 -EAA----PDGIDCYF-D--NVGG--------------------------EFSSTVLSHMNDFGRVAV 239 (329)
T ss_pred -HHC----CCCcEEEE-E--CCCH--------------------------HHHHHHHHhhccCCEEEE
Confidence 000 13488776 4 3331 246778899999999874
No 342
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=62.88 E-value=50 Score=34.60 Aligned_cols=101 Identities=16% Similarity=0.237 Sum_probs=56.6
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
...+++|++||-.+ .|+....++++.... +...|++.+.+.++...+. ++|.. .++..+...+....
T Consensus 154 ~~~~~~g~~vlI~g--~g~vg~~~~~la~~~-----G~~~v~~~~~~~~~~~~~~----~~g~~--~~~~~~~~~~~~~~ 220 (334)
T cd08234 154 LLGIKPGDSVLVFG--AGPIGLLLAQLLKLN-----GASRVTVAEPNEEKLELAK----KLGAT--ETVDPSREDPEAQK 220 (334)
T ss_pred hcCCCCCCEEEEEC--CCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHHH----HhCCe--EEecCCCCCHHHHH
Confidence 34678899999984 355544444443311 2224888899988876653 34654 22222211111000
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV 319 (646)
. .....+|.|+. |+|.+ ..+..+++.|+++|+++
T Consensus 221 ~------~~~~~vd~v~~---~~~~~-------------------------~~~~~~~~~l~~~G~~v 254 (334)
T cd08234 221 E------DNPYGFDVVIE---ATGVP-------------------------KTLEQAIEYARRGGTVL 254 (334)
T ss_pred H------hcCCCCcEEEE---CCCCh-------------------------HHHHHHHHHHhcCCEEE
Confidence 0 01135888874 44422 35777889999999886
No 343
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=62.68 E-value=65 Score=34.31 Aligned_cols=103 Identities=13% Similarity=0.141 Sum_probs=57.6
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+++|++||=.+ .|+....++++.... +...|++.|.+.+|...++ .+|...+ +..+-..+.....
T Consensus 162 ~~~~~g~~vlI~g--~g~iG~~~~~lak~~-----G~~~v~~~~~~~~~~~~~~----~~g~~~~--v~~~~~~~~~~i~ 228 (351)
T cd08285 162 ANIKLGDTVAVFG--IGPVGLMAVAGARLR-----GAGRIIAVGSRPNRVELAK----EYGATDI--VDYKNGDVVEQIL 228 (351)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc-----CCCeEEEEeCCHHHHHHHH----HcCCceE--ecCCCCCHHHHHH
Confidence 4567899988874 355444444333211 3446999999999876664 4676432 2221111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
.... ...+|.|+- |+|.. ..+..+++.|+++|++|.
T Consensus 229 ~~~~----~~~~d~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 264 (351)
T cd08285 229 KLTG----GKGVDAVII---AGGGQ-------------------------DTFEQALKVLKPGGTISN 264 (351)
T ss_pred HHhC----CCCCcEEEE---CCCCH-------------------------HHHHHHHHHhhcCCEEEE
Confidence 0001 135887773 44421 347788899999999884
No 344
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=62.44 E-value=32 Score=36.54 Aligned_cols=55 Identities=15% Similarity=0.136 Sum_probs=33.4
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCe
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCA 237 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni 237 (646)
..+++|++||=.+| +|+....++++... -...|++.+.+.++.+.+++ .+|...+
T Consensus 147 ~~~~~g~~VlI~Ga-~G~vG~~aiqlAk~------~G~~Vi~~~~~~~~~~~~~~---~lGa~~v 201 (338)
T cd08295 147 CKPKKGETVFVSAA-SGAVGQLVGQLAKL------KGCYVVGSAGSDEKVDLLKN---KLGFDDA 201 (338)
T ss_pred cCCCCCCEEEEecC-ccHHHHHHHHHHHH------cCCEEEEEeCCHHHHHHHHH---hcCCcee
Confidence 45789999996554 45544444443321 12368888888888766643 2676543
No 345
>PRK07326 short chain dehydrogenase; Provisional
Probab=61.82 E-value=41 Score=33.31 Aligned_cols=60 Identities=12% Similarity=-0.072 Sum_probs=41.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASV 246 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~ 246 (646)
+..||=.+ |.|+...+++..+... ...|++.+.++.++..+...+... ..+.++..|...
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~------g~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAE------GYKVAITARDQKELEEAAAELNNK--GNVLGLAADVRD 65 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHC------CCEEEEeeCCHHHHHHHHHHHhcc--CcEEEEEccCCC
Confidence 55677555 5788888888877521 236899999988877666655432 446677777765
No 346
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=61.82 E-value=59 Score=33.25 Aligned_cols=134 Identities=12% Similarity=0.043 Sum_probs=65.0
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCH---HHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 177 THHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDN---NRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 177 pg~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~---~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
.|..+|=.+|++ +|...++|..+... ...|+..+.+. .+++.+. +.+...++.++..|.+.......
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~------G~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNA------GAKLVFTYAGERLEKEVRELA---DTLEGQESLLLPCDVTSDEEITA 76 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHC------CCEEEEecCcccchHHHHHHH---HHcCCCceEEEecCCCCHHHHHH
Confidence 366788888874 88899999887632 23666665443 3444333 33322356677788765422110
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhh----HHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNL----HGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l----~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
....-.....++|.++..+-....+... .+ +...+.+..... ......+++.++.+++.+|+||..+
T Consensus 77 ~~~~~~~~~g~ld~lv~nag~~~~~~~~-~~--~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 77 CFETIKEEVGVIHGVAHCIAFANKEDLR-GE--FLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred HHHHHHHhCCCccEEEECcccCCCCcCC-Cc--cccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 0000001125689877655221110000 00 011111111110 1112235566777788889888653
No 347
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=61.77 E-value=49 Score=36.50 Aligned_cols=117 Identities=14% Similarity=0.161 Sum_probs=59.2
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+++|++||=. |.|+....++++.... +...|++.|.++.|++.++ ++|.. . +.......+.....
T Consensus 181 ~~~~~g~~VlV~--G~G~iG~~aiqlAk~~-----Ga~~vi~~d~~~~r~~~a~----~~Ga~-~-v~~~~~~~~~~~v~ 247 (393)
T TIGR02819 181 AGVGPGSTVYIA--GAGPVGLAAAASAQLL-----GAAVVIVGDLNPARLAQAR----SFGCE-T-VDLSKDATLPEQIE 247 (393)
T ss_pred cCCCCCCEEEEE--CCCHHHHHHHHHHHHc-----CCceEEEeCCCHHHHHHHH----HcCCe-E-EecCCcccHHHHHH
Confidence 357889998764 3455554444433211 2345777899998887764 46764 2 22111111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHH-HHHHHHHHhhccCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQY-RIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~-~IL~~A~~lLKpGG~LVYS 321 (646)
...+ ...+|.|+- |+|.-.- + |..+. ...+. ..+..+++++++||++++.
T Consensus 248 -~~~~---~~g~Dvvid---~~G~~~~----~----~~~~~----~~~~~~~~~~~~~~~~~~~G~i~~~ 298 (393)
T TIGR02819 248 -QILG---EPEVDCAVD---CVGFEAR----G----HGHDG----KKEAPATVLNSLMEVTRVGGAIGIP 298 (393)
T ss_pred -HHcC---CCCCcEEEE---CCCCccc----c----ccccc----cccchHHHHHHHHHHhhCCCEEEEe
Confidence 0000 124887763 5653100 0 00000 00122 3688899999999999863
No 348
>KOG2352|consensus
Probab=61.68 E-value=9.2 Score=43.28 Aligned_cols=134 Identities=13% Similarity=0.050 Sum_probs=80.0
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGN 258 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~ 258 (646)
-.+|=++=|.|+....+--.+ +...++|+++++..++...++..........|+-.|+..+..... ...
T Consensus 297 ~~~lvvg~ggG~l~sfl~~~~--------p~~~i~~ve~dP~~l~va~q~f~f~q~~r~~V~i~dGl~~~~~~~---k~~ 365 (482)
T KOG2352|consen 297 GKQLVVGLGGGGLPSFLHMSL--------PKFQITAVEIDPEMLEVATQYFGFMQSDRNKVHIADGLDFLQRTA---KSQ 365 (482)
T ss_pred CcEEEEecCCCccccceeeec--------CccceeEEEEChhHhhccHhhhchhhhhhhhhhHhhchHHHHHHh---hcc
Confidence 345555555577766553322 567899999999999999998877665545566667655432111 111
Q ss_pred CCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHH
Q psy17365 259 KVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQR 336 (646)
Q Consensus 259 ~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~ 336 (646)
.....||.+++|+--+..+-+.--|- .-+-..+|..+-..|.|-|.++.---+=+..-+..+...
T Consensus 366 ~~~~~~dvl~~dvds~d~~g~~~pp~-------------~fva~~~l~~~k~~l~p~g~f~inlv~r~~~~~~~~~~~ 430 (482)
T KOG2352|consen 366 QEDICPDVLMVDVDSKDSHGMQCPPP-------------AFVAQVALQPVKMILPPRGMFIINLVTRNSSFKDEVLMN 430 (482)
T ss_pred ccccCCcEEEEECCCCCcccCcCCch-------------HHHHHHHHHHHhhccCccceEEEEEecCCcchhHHHHHh
Confidence 12467999999975222111111111 112235677888889999977654444444445555444
No 349
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=60.39 E-value=49 Score=34.91 Aligned_cols=42 Identities=19% Similarity=0.205 Sum_probs=25.7
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHH
Q psy17365 176 QTHHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYML 225 (646)
Q Consensus 176 ~pg~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L 225 (646)
.+|++||-.++|. |..+.++|..+ +...|++.+.+..+...+
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~--------G~~~v~~~~~s~~~~~~~ 206 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRA--------GAAEIVATDLADAPLAVA 206 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHc--------CCcEEEEECCCHHHHHHH
Confidence 3889999865432 33444444443 233688999888877644
No 350
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=59.12 E-value=58 Score=35.08 Aligned_cols=52 Identities=12% Similarity=0.125 Sum_probs=34.5
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP 235 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ 235 (646)
..+++|++||=.++ |+....++++.... +...|+++|.+.+|.+.+ +.+|..
T Consensus 183 ~~~~~g~~VlV~G~--g~vG~~a~q~ak~~-----G~~~vi~~~~~~~~~~~~----~~~Ga~ 234 (369)
T cd08301 183 AKVKKGSTVAIFGL--GAVGLAVAEGARIR-----GASRIIGVDLNPSKFEQA----KKFGVT 234 (369)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHH----HHcCCc
Confidence 45789999987743 66655555444311 234799999999988766 447764
No 351
>PRK06914 short chain dehydrogenase; Provisional
Probab=59.01 E-value=50 Score=33.82 Aligned_cols=88 Identities=14% Similarity=0.014 Sum_probs=52.4
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC-CCeEEEecCCCCCccccccCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS-PCAIITNHDASVMPNVLYTDADGN 258 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~-~ni~v~~~Da~~~p~~~~~~~~g~ 258 (646)
.|| ++.|+|+...+++..+... .-.|++.+.+...+..+.+.+...+. .++.++..|.+....... -..-.
T Consensus 5 ~~l-ItGasg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~-~~~~~ 76 (280)
T PRK06914 5 IAI-VTGASSGFGLLTTLELAKK------GYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHN-FQLVL 76 (280)
T ss_pred EEE-EECCCchHHHHHHHHHHhC------CCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHH-HHHHH
Confidence 444 4456778888888877521 23788899888888777766655553 357778888876432110 00000
Q ss_pred CCCCCCCeeecCCCCCC
Q psy17365 259 KVPMKFDRVLCDVPCTG 275 (646)
Q Consensus 259 ~~~~~FD~IL~D~PCSG 275 (646)
......|.|+..+-.+.
T Consensus 77 ~~~~~id~vv~~ag~~~ 93 (280)
T PRK06914 77 KEIGRIDLLVNNAGYAN 93 (280)
T ss_pred HhcCCeeEEEECCcccc
Confidence 01135788888664333
No 352
>COG3270 Uncharacterized conserved protein [Function unknown]
Probab=58.85 E-value=19 Score=33.54 Aligned_cols=92 Identities=18% Similarity=0.256 Sum_probs=67.4
Q ss_pred CCceEEeCceeeEEEecCCCCccceeeccchhHHHhhhhCCCcEEEeCHHHHHHHHhcCCCCCCccccccCHHHHhhhcc
Q psy17365 515 NNLKIINTGVKSFARCDNKVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILNNSTPEQPTDLELLRPETRQTLTR 594 (646)
Q Consensus 515 ~~lkiv~~Gvk~F~r~~~~~~~c~~Ri~~eg~~~l~~~~~~kr~v~~~~~~~~~ll~~~~p~~~~~~~~~~~~~~~~~~~ 594 (646)
.++++ +.|+++=+-++. .||++.||..+|.|-- .+..|+++.+++..-....... +. .
T Consensus 33 ~k~~~-r~GI~lg~~~kk-----g~r~s~e~~~al~p~~-~~nsiELd~e~a~~w~rG~dV~---------~~-----~- 90 (127)
T COG3270 33 FKEKI-HNGIKLGEIHKK-----GYRWSHEGGFALAPPA-VRNSIELDEEEAREWMRGRDVE---------PQ-----E- 90 (127)
T ss_pred hhhhh-hcceEEEEEecc-----CeeEEeeEEEEeCChh-hcceEEeCHHHHHhhhcCCccc---------cC-----C-
Confidence 56889 999999776654 4999999999999998 8999999999999776554432 11 1
Q ss_pred cCCCCccEEEEEecCCCeEEEEeeeccceeeccCHHh
Q psy17365 595 EGFGVGSCLLELQDDLPLSLVGWRGKSSVRAYISGSD 631 (646)
Q Consensus 595 ~~~~~G~~v~~~~~~~~~~~~~w~g~~s~~~~v~k~~ 631 (646)
+..-|-|+|.+. +..+=++-|.|.. |.=+++|+=
T Consensus 91 -~~~~g~viv~~~-~~~lG~aK~vg~v-lKN~~Pkel 124 (127)
T COG3270 91 -SGPAGWVIVKFQ-GNGLGLAKVVGNV-LKNYFPKEL 124 (127)
T ss_pred -CCCCceEEEEEC-CcccceeeecCce-ecccCChhh
Confidence 334578888876 4445566677774 666666653
No 353
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=58.78 E-value=43 Score=36.27 Aligned_cols=96 Identities=16% Similarity=0.114 Sum_probs=51.5
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
+++|++||=.++ |+....+++.... -...|++++.+..+...+ ++++|...+.. ..+...+..
T Consensus 181 ~~~g~~VlV~G~--G~vG~~avq~Ak~------~Ga~vi~~~~~~~~~~~~---~~~~Ga~~vi~-~~~~~~~~~----- 243 (360)
T PLN02586 181 TEPGKHLGVAGL--GGLGHVAVKIGKA------FGLKVTVISSSSNKEDEA---INRLGADSFLV-STDPEKMKA----- 243 (360)
T ss_pred cCCCCEEEEECC--CHHHHHHHHHHHH------CCCEEEEEeCCcchhhhH---HHhCCCcEEEc-CCCHHHHHh-----
Confidence 468999987654 5555444444321 123577777776553322 34577643221 111111100
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
. ...+|.|+ | |+|.. ..+..++++|++||++|.
T Consensus 244 ~-----~~~~D~vi-d--~~g~~-------------------------~~~~~~~~~l~~~G~iv~ 276 (360)
T PLN02586 244 A-----IGTMDYII-D--TVSAV-------------------------HALGPLLGLLKVNGKLIT 276 (360)
T ss_pred h-----cCCCCEEE-E--CCCCH-------------------------HHHHHHHHHhcCCcEEEE
Confidence 0 01378776 4 44421 236778899999999884
No 354
>PRK07109 short chain dehydrogenase; Provisional
Probab=58.61 E-value=75 Score=34.08 Aligned_cols=130 Identities=12% Similarity=-0.005 Sum_probs=71.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+..||= .-|+|+....+++.+... ...|++.+.+..+++.+.+.++..|. ++.++..|.++..........-
T Consensus 8 ~k~vlI-TGas~gIG~~la~~la~~------G~~Vvl~~R~~~~l~~~~~~l~~~g~-~~~~v~~Dv~d~~~v~~~~~~~ 79 (334)
T PRK07109 8 RQVVVI-TGASAGVGRATARAFARR------GAKVVLLARGEEGLEALAAEIRAAGG-EALAVVADVADAEAVQAAADRA 79 (334)
T ss_pred CCEEEE-ECCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEEecCCCHHHHHHHHHHH
Confidence 445554 445677888888877521 24788899999998888887776664 4667778876643211000000
Q ss_pred CCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHH----HHHHHHHHHHHhhcc--CCeEEEEc
Q psy17365 258 NKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHG----IQYRIVKRGVEMLAV--GGKIAYST 322 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~----lQ~~IL~~A~~lLKp--GG~LVYST 322 (646)
......+|.++..+-.+..+.+ ...+.++...... -...+...++..++. +|++|+.+
T Consensus 80 ~~~~g~iD~lInnAg~~~~~~~-------~~~~~~~~~~~~~vN~~g~~~~~~~~l~~~~~~~~g~iV~is 143 (334)
T PRK07109 80 EEELGPIDTWVNNAMVTVFGPF-------EDVTPEEFRRVTEVTYLGVVHGTLAALRHMRPRDRGAIIQVG 143 (334)
T ss_pred HHHCCCCCEEEECCCcCCCCch-------hhCCHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCcEEEEeC
Confidence 0112468988876543222211 1222222222211 133455566666654 58888653
No 355
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=58.51 E-value=86 Score=34.80 Aligned_cols=119 Identities=15% Similarity=0.174 Sum_probs=63.9
Q ss_pred CCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHH------------HH-cCCCCeEEEecCCCCCcccccc
Q psy17365 187 APGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQA------------KR-LNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 187 aPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~------------~r-lg~~ni~v~~~Da~~~p~~~~~ 253 (646)
|.|.....+|..+.. ..-.|++.|+++.+++.+.... .+ ....++.++ .|...
T Consensus 7 GlG~~G~~lA~~La~------~G~~V~~~d~~~~~v~~l~~g~~~~~e~~l~~~~~~~~~~g~l~~~-~~~~~------- 72 (411)
T TIGR03026 7 GLGYVGLPLAALLAD------LGHEVTGVDIDQEKVDKLNKGKSPIYEPGLDELLAKALAAGRLRAT-TDYED------- 72 (411)
T ss_pred CCCchhHHHHHHHHh------cCCeEEEEECCHHHHHHhhcCCCCCCCCCHHHHHHHhhhcCCeEEE-CCHHH-------
Confidence 455555566655541 1237999999999988765321 00 000112221 11110
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHH
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAV 333 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~V 333 (646)
.....|.|++-+|..-.. ...||. ..+ ...+....+.+++|-.+|.. .|+.|...+.+
T Consensus 73 ------~~~~advvii~vpt~~~~--~~~~d~---------~~v----~~~~~~i~~~l~~g~lvi~~-STv~pgt~~~l 130 (411)
T TIGR03026 73 ------AIRDADVIIICVPTPLKE--DGSPDL---------SYV----ESAAETIAKHLRKGATVVLE-STVPPGTTEEV 130 (411)
T ss_pred ------HHhhCCEEEEEeCCCCCC--CCCcCh---------HHH----HHHHHHHHHhcCCCCEEEEe-CcCCCCchHHH
Confidence 013579999877743321 112221 111 12334445567876666654 48999999999
Q ss_pred HHHHHHHc
Q psy17365 334 IQRLIVET 341 (646)
Q Consensus 334 V~~~L~~~ 341 (646)
...++++.
T Consensus 131 ~~~~~~~~ 138 (411)
T TIGR03026 131 VKPILERA 138 (411)
T ss_pred HHHHHHhh
Confidence 88888763
No 356
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=58.15 E-value=99 Score=32.24 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=57.4
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+++|++||=.+ .|+....+++..... ...|++.+.++++.+.+++ +|...+... +.. .
T Consensus 151 ~~~~~g~~vlV~g--~g~vg~~~~q~a~~~------G~~vi~~~~~~~~~~~~~~----~g~~~~~~~--~~~-~----- 210 (319)
T cd08242 151 VPITPGDKVAVLG--DGKLGLLIAQVLALT------GPDVVLVGRHSEKLALARR----LGVETVLPD--EAE-S----- 210 (319)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc------CCeEEEEcCCHHHHHHHHH----cCCcEEeCc--ccc-c-----
Confidence 4567899988773 577766666655421 2258899999988777654 675432211 110 0
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
....+|.|+- |+|.+ ..+..+.+.|+++|++|.
T Consensus 211 -------~~~~~d~vid---~~g~~-------------------------~~~~~~~~~l~~~g~~v~ 243 (319)
T cd08242 211 -------EGGGFDVVVE---ATGSP-------------------------SGLELALRLVRPRGTVVL 243 (319)
T ss_pred -------cCCCCCEEEE---CCCCh-------------------------HHHHHHHHHhhcCCEEEE
Confidence 0135887763 55532 246677888999999884
No 357
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=57.92 E-value=57 Score=36.42 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=72.2
Q ss_pred CCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCC-------CccccccCCCCCC
Q psy17365 187 APGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASV-------MPNVLYTDADGNK 259 (646)
Q Consensus 187 aPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~-------~p~~~~~~~~g~~ 259 (646)
|-|...+.+|.+... ..-.|+++||++++++.+.. |. ..+..-+... -..+..+ .+. .
T Consensus 16 GLGYVGLPlA~~fA~------~G~~ViG~DIn~~~Vd~ln~-----G~--~~i~e~~~~~~v~~~v~~g~lraT-td~-~ 80 (436)
T COG0677 16 GLGYVGLPLAAAFAS------AGFKVIGVDINQKKVDKLNR-----GE--SYIEEPDLDEVVKEAVESGKLRAT-TDP-E 80 (436)
T ss_pred ccccccHHHHHHHHH------cCCceEeEeCCHHHHHHHhC-----Cc--ceeecCcHHHHHHHHHhcCCceEe-cCh-h
Confidence 456666666666542 13479999999999877643 21 1121111111 0000000 011 1
Q ss_pred CCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHH
Q psy17365 260 VPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIV 339 (646)
Q Consensus 260 ~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~ 339 (646)
....-|.++.-+|---.+ .+.||+- .-.+..+.....|++|-.+|+- -|..|--.|+++..+|+
T Consensus 81 ~l~~~dv~iI~VPTPl~~--~~~pDls-------------~v~~aa~sIa~~L~kG~LVIlE-ST~~PGTTe~v~~plle 144 (436)
T COG0677 81 ELKECDVFIICVPTPLKK--YREPDLS-------------YVESAARSIAPVLKKGDLVILE-STTPPGTTEEVVKPLLE 144 (436)
T ss_pred hcccCCEEEEEecCCcCC--CCCCChH-------------HHHHHHHHHHHhcCCCCEEEEe-cCCCCCcHHHHHHHHHh
Confidence 113567777766633333 2677761 1124455667789997766665 58889999999999998
Q ss_pred HccC
Q psy17365 340 ETQG 343 (646)
Q Consensus 340 ~~~~ 343 (646)
..+|
T Consensus 145 ~~sg 148 (436)
T COG0677 145 ERSG 148 (436)
T ss_pred hcCC
Confidence 7443
No 358
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=57.45 E-value=58 Score=32.27 Aligned_cols=127 Identities=14% Similarity=0.036 Sum_probs=67.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+||=.+| +|+....+++.+... ...|++.+.+..++..+...+...+ ++.++..|..............
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~Dl~~~~~~~~~~~~~ 75 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKE------GAQVCINSRNENKLKRMKKTLSKYG--NIHYVVGDVSSTESARNVIEKA 75 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEECCCCCHHHHHHHHHHH
Confidence 557776666 588888888877521 2378999999888776655544332 5667777776532211000000
Q ss_pred CCCCCCCCeeecCCCCCCCcccccCccccccCCcchh----hhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 258 NKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNG----NNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~----~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
.......|.|+..+.=+. ..+. +..+.. .........++...+.+++.+|.+|+.+
T Consensus 76 ~~~~~~id~ii~~ag~~~-----~~~~----~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~s 135 (238)
T PRK05786 76 AKVLNAIDGLVVTVGGYV-----EDTV----EEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVS 135 (238)
T ss_pred HHHhCCCCEEEEcCCCcC-----CCch----HHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEe
Confidence 001134688887553111 1110 001111 1111223455677777888888777653
No 359
>PRK07102 short chain dehydrogenase; Provisional
Probab=57.44 E-value=1e+02 Score=30.78 Aligned_cols=83 Identities=18% Similarity=0.059 Sum_probs=51.5
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
+||= ..|+|+....++..+... ...|++.+.+..+...+...+...+..++.+...|.+........ .+ .
T Consensus 3 ~vlI-tGas~giG~~~a~~l~~~------G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~-~~--~ 72 (243)
T PRK07102 3 KILI-IGATSDIARACARRYAAA------GARLYLAARDVERLERLADDLRARGAVAVSTHELDILDTASHAAF-LD--S 72 (243)
T ss_pred EEEE-EcCCcHHHHHHHHHHHhc------CCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCChHHHHHH-HH--H
Confidence 4563 446788888888887521 237999999998877666655444445788888888764322100 00 0
Q ss_pred CCCCCCeeecCCC
Q psy17365 260 VPMKFDRVLCDVP 272 (646)
Q Consensus 260 ~~~~FD~IL~D~P 272 (646)
....+|.|+..+.
T Consensus 73 ~~~~~d~vv~~ag 85 (243)
T PRK07102 73 LPALPDIVLIAVG 85 (243)
T ss_pred HhhcCCEEEECCc
Confidence 0124688887664
No 360
>PRK07831 short chain dehydrogenase; Provisional
Probab=56.83 E-value=67 Score=32.57 Aligned_cols=90 Identities=13% Similarity=-0.008 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-cCCCCeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR-LNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~r-lg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.+.+||=.+++.++....++..+... ...|+..|.+..+++...+.++. ++..++.++..|.+........-.
T Consensus 16 ~~k~vlItG~sg~gIG~~ia~~l~~~------G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~ 89 (262)
T PRK07831 16 AGKVVLVTAAAGTGIGSATARRALEE------GARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTSEAQVDALID 89 (262)
T ss_pred CCCEEEEECCCcccHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCCHHHHHHHHH
Confidence 45677766664226777777776421 23588889988888777666654 454467778888765321110000
Q ss_pred CCCCCCCCCCeeecCCC
Q psy17365 256 DGNKVPMKFDRVLCDVP 272 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~P 272 (646)
.-.......|.|+..+-
T Consensus 90 ~~~~~~g~id~li~~ag 106 (262)
T PRK07831 90 AAVERLGRLDVLVNNAG 106 (262)
T ss_pred HHHHHcCCCCEEEECCC
Confidence 00001135788887653
No 361
>PRK15182 Vi polysaccharide biosynthesis protein TviB; Provisional
Probab=56.81 E-value=88 Score=35.15 Aligned_cols=116 Identities=16% Similarity=0.133 Sum_probs=66.6
Q ss_pred CCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHH-----------HcCCCCeEEEecCCCCCccccccC
Q psy17365 186 AAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAK-----------RLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 186 AaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~-----------rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
-|.|.....+|..+. ..-.|+++|+++.+++.|.+... ..| ++.++ .+..
T Consensus 12 IGlGyvGlpmA~~la-------~~~~V~g~D~~~~~ve~l~~G~~~~~e~~~~~l~~~g--~l~~t-~~~~--------- 72 (425)
T PRK15182 12 IGLGYVGLPLAVEFG-------KSRQVVGFDVNKKRILELKNGVDVNLETTEEELREAR--YLKFT-SEIE--------- 72 (425)
T ss_pred ECcCcchHHHHHHHh-------cCCEEEEEeCCHHHHHHHHCcCCCCCCCCHHHHHhhC--CeeEE-eCHH---------
Confidence 377877777777764 22579999999999888762211 111 11111 1110
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHH
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVI 334 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV 334 (646)
....-|.|++-+|=.-.. ...+|+ ..+ ........+.|++|..+| -..|+.|...++++
T Consensus 73 -----~~~~advvii~Vptp~~~--~~~~dl------------~~v-~~a~~~i~~~l~~g~lVI-~~STv~pgtt~~~~ 131 (425)
T PRK15182 73 -----KIKECNFYIITVPTPINT--YKQPDL------------TPL-IKASETVGTVLNRGDIVV-YESTVYPGCTEEEC 131 (425)
T ss_pred -----HHcCCCEEEEEcCCCCCC--CCCcch------------HHH-HHHHHHHHHhcCCCCEEE-EecCCCCcchHHHH
Confidence 013578888866621110 011221 111 122345556778865555 55799999999999
Q ss_pred HHHHHHc
Q psy17365 335 QRLIVET 341 (646)
Q Consensus 335 ~~~L~~~ 341 (646)
...+++.
T Consensus 132 ~~~l~~~ 138 (425)
T PRK15182 132 VPILARM 138 (425)
T ss_pred HHHHHhc
Confidence 9988863
No 362
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=56.67 E-value=1.3e+02 Score=30.17 Aligned_cols=64 Identities=9% Similarity=0.006 Sum_probs=45.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDAS 245 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~ 245 (646)
+.++.+||=.+ |.|+....++..+... ...|++.+.+...+..+...++..+...+.+...|..
T Consensus 9 ~~~~k~vlItG-~~g~iG~~la~~l~~~------G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~d~~ 72 (247)
T PRK08945 9 LLKDRIILVTG-AGDGIGREAALTYARH------GATVILLGRTEEKLEAVYDEIEAAGGPQPAIIPLDLL 72 (247)
T ss_pred ccCCCEEEEeC-CCchHHHHHHHHHHHC------CCcEEEEeCCHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 34566777655 5778888888877521 2388999999988877777777766556666666664
No 363
>KOG1562|consensus
Probab=56.65 E-value=45 Score=35.82 Aligned_cols=123 Identities=17% Similarity=0.115 Sum_probs=83.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHH----cCCCCeEEEecCCCCCcccccc
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR----LNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~r----lg~~ni~v~~~Da~~~p~~~~~ 253 (646)
-.+||=++-|-|+..-..+ +|. .-+.+.-+|++..-++.-++-+.. ..-+.|.++-+|+..|.....
T Consensus 122 pkkvlVVgggDggvlrevi--kH~------~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~- 192 (337)
T KOG1562|consen 122 PKKVLVVGGGDGGVLREVI--KHK------SVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLK- 192 (337)
T ss_pred CCeEEEEecCCccceeeee--ccc------cccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhc-
Confidence 3589999999999755433 221 246788889988766655444332 334568888889877654321
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHH
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAV 333 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~V 333 (646)
...||+|++|.. +|. +......|+....-..+.||+||+++ + ..|...+
T Consensus 193 -------~~~~dVii~dss---------dpv---------gpa~~lf~~~~~~~v~~aLk~dgv~~----~--q~ec~wl 241 (337)
T KOG1562|consen 193 -------ENPFDVIITDSS---------DPV---------GPACALFQKPYFGLVLDALKGDGVVC----T--QGECMWL 241 (337)
T ss_pred -------cCCceEEEEecC---------Ccc---------chHHHHHHHHHHHHHHHhhCCCcEEE----E--ecceehH
Confidence 368999999853 222 35567788888999999999999885 2 3466666
Q ss_pred HHHHHHH
Q psy17365 334 IQRLIVE 340 (646)
Q Consensus 334 V~~~L~~ 340 (646)
-..++++
T Consensus 242 ~~~~i~e 248 (337)
T KOG1562|consen 242 HLDYIKE 248 (337)
T ss_pred HHHHHHH
Confidence 6666654
No 364
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=56.44 E-value=59 Score=32.79 Aligned_cols=88 Identities=14% Similarity=-0.014 Sum_probs=52.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.|.+||=.+ |.|+....++..+... ...|+..+.+..++..+...++..|. .+.++..|..+...+......
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~D~~~~~~~~~~~~~ 80 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQA------GAEVILNGRDPAKLAAAAESLKGQGL-SAHALAFDVTDHDAVRAAIDA 80 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcCc-eEEEEEccCCCHHHHHHHHHH
Confidence 356777555 5788888888877521 33788899998888777777765543 356677787653221100000
Q ss_pred CCCCCCCCCeeecCCC
Q psy17365 257 GNKVPMKFDRVLCDVP 272 (646)
Q Consensus 257 g~~~~~~FD~IL~D~P 272 (646)
-.......|.|+..+-
T Consensus 81 ~~~~~~~~d~li~~ag 96 (255)
T PRK07523 81 FEAEIGPIDILVNNAG 96 (255)
T ss_pred HHHhcCCCCEEEECCC
Confidence 0011245788887653
No 365
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=56.44 E-value=73 Score=34.37 Aligned_cols=101 Identities=23% Similarity=0.221 Sum_probs=56.4
Q ss_pred CCCCCCeEEEEcCC--CchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEE-EecCCCCCccc
Q psy17365 174 DVQTHHKVLDMCAA--PGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAII-TNHDASVMPNV 250 (646)
Q Consensus 174 d~~pg~~VLDmCAa--PGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v-~~~Da~~~p~~ 250 (646)
.+++|++||=.+|+ -|..++|||..++ . .+++.-.+..... .++.+|.+.+.. ...| +...
T Consensus 139 ~l~~g~~VLV~gaaGgVG~~aiQlAk~~G--------~-~~v~~~~s~~k~~----~~~~lGAd~vi~y~~~~---~~~~ 202 (326)
T COG0604 139 GLKPGETVLVHGAAGGVGSAAIQLAKALG--------A-TVVAVVSSSEKLE----LLKELGADHVINYREED---FVEQ 202 (326)
T ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHcC--------C-cEEEEecCHHHHH----HHHhcCCCEEEcCCccc---HHHH
Confidence 57889999976643 3345566666542 2 6666666665544 345677764332 1222 2111
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC 323 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC 323 (646)
.. ...+ ...+|.|+- .- | ...+.+++..|+++|+++....
T Consensus 203 v~-~~t~---g~gvDvv~D-~v----G------------------------~~~~~~~l~~l~~~G~lv~ig~ 242 (326)
T COG0604 203 VR-ELTG---GKGVDVVLD-TV----G------------------------GDTFAASLAALAPGGRLVSIGA 242 (326)
T ss_pred HH-HHcC---CCCceEEEE-CC----C------------------------HHHHHHHHHHhccCCEEEEEec
Confidence 00 0000 135898873 21 1 1457778999999999986543
No 366
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=56.42 E-value=75 Score=31.96 Aligned_cols=88 Identities=10% Similarity=0.019 Sum_probs=52.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+..||=.+ |.|+...+++..+... ...|+..+.+..++..+.+.++..+. .+.++..|.+...........-
T Consensus 9 ~k~~lItG-as~giG~~ia~~L~~~------G~~vvl~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~~~~~~~~~ 80 (254)
T PRK08085 9 GKNILITG-SAQGIGFLLATGLAEY------GAEIIINDITAERAELAVAKLRQEGI-KAHAAPFNVTHKQEVEAAIEHI 80 (254)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHHHHhcCC-eEEEEecCCCCHHHHHHHHHHH
Confidence 44566444 5678888888887521 23788899998888777776665542 3556677876532211000000
Q ss_pred CCCCCCCCeeecCCCC
Q psy17365 258 NKVPMKFDRVLCDVPC 273 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PC 273 (646)
......+|.|+..+-.
T Consensus 81 ~~~~~~id~vi~~ag~ 96 (254)
T PRK08085 81 EKDIGPIDVLINNAGI 96 (254)
T ss_pred HHhcCCCCEEEECCCc
Confidence 0112468999987643
No 367
>PRK07832 short chain dehydrogenase; Provisional
Probab=56.15 E-value=49 Score=33.86 Aligned_cols=56 Identities=16% Similarity=0.053 Sum_probs=37.2
Q ss_pred cCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCC
Q psy17365 185 CAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASV 246 (646)
Q Consensus 185 CAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~ 246 (646)
.-|.|+...++++.+... ...|+.++.+...++.+...+...+...+.+...|.+.
T Consensus 6 tGas~giG~~la~~la~~------G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 61 (272)
T PRK07832 6 TGAASGIGRATALRLAAQ------GAELFLTDRDADGLAQTVADARALGGTVPEHRALDISD 61 (272)
T ss_pred eCCCCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEeeCCC
Confidence 445778888888876521 24688888888877777666665554444555677654
No 368
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.11 E-value=77 Score=31.61 Aligned_cols=87 Identities=7% Similarity=-0.022 Sum_probs=48.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEE-EcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVA-NDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA-~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
+.+|| +..|.|+...+++..+... ...|+. .+.+....+.+...++..+ .++.++..|.+........-..
T Consensus 4 ~~~vl-ItGa~g~iG~~~a~~l~~~------g~~v~~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~ 75 (250)
T PRK08063 4 GKVAL-VTGSSRGIGKAIALRLAEE------GYDIAVNYARSRKAAEETAEEIEALG-RKALAVKANVGDVEKIKEMFAQ 75 (250)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHHHhcC-CeEEEEEcCCCCHHHHHHHHHH
Confidence 45666 4455688899999888621 224544 4566666666666665554 3466677887653221100000
Q ss_pred CCCCCCCCCeeecCCC
Q psy17365 257 GNKVPMKFDRVLCDVP 272 (646)
Q Consensus 257 g~~~~~~FD~IL~D~P 272 (646)
-.......|.|++.+.
T Consensus 76 ~~~~~~~id~vi~~ag 91 (250)
T PRK08063 76 IDEEFGRLDVFVNNAA 91 (250)
T ss_pred HHHHcCCCCEEEECCC
Confidence 0001135798888764
No 369
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=55.84 E-value=85 Score=32.33 Aligned_cols=86 Identities=16% Similarity=0.061 Sum_probs=44.3
Q ss_pred CCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
|..+|=.+|+. +|....+|+.+... ...|+..+.+. ++....+.+.... ..+.++..|.+...........
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~------G~~vil~~r~~-~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~v~~~~~~ 77 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHRE------GAELAFTYQND-KLKGRVEEFAAQL-GSDIVLPCDVAEDASIDAMFAE 77 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHC------CCEEEEEecch-hHHHHHHHHHhcc-CCceEeecCCCCHHHHHHHHHH
Confidence 56777778876 38888888877521 23566667663 3322222222211 2345566787653221100000
Q ss_pred CCCCCCCCCeeecCC
Q psy17365 257 GNKVPMKFDRVLCDV 271 (646)
Q Consensus 257 g~~~~~~FD~IL~D~ 271 (646)
.......+|.++..+
T Consensus 78 ~~~~~g~iD~linnA 92 (262)
T PRK07984 78 LGKVWPKFDGFVHSI 92 (262)
T ss_pred HHhhcCCCCEEEECC
Confidence 001124689888876
No 370
>PRK06194 hypothetical protein; Provisional
Probab=55.74 E-value=53 Score=33.79 Aligned_cols=90 Identities=10% Similarity=-0.028 Sum_probs=52.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+|| +.-|.|+...++++.+... ...|++.|.+...+..+.+.+...+. ++.++..|.+....+......-
T Consensus 6 ~k~vl-VtGasggIG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~d~~~~~~~~~~~ 77 (287)
T PRK06194 6 GKVAV-ITGAASGFGLAFARIGAAL------GMKLVLADVQQDALDRAVAELRAQGA-EVLGVRTDVSDAAQVEALADAA 77 (287)
T ss_pred CCEEE-EeCCccHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHHHHhcCC-eEEEEECCCCCHHHHHHHHHHH
Confidence 45677 5666788899999887632 23688899988777666555544332 4667788887532211000000
Q ss_pred CCCCCCCCeeecCCCCCC
Q psy17365 258 NKVPMKFDRVLCDVPCTG 275 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCSG 275 (646)
.......|.|+..+--++
T Consensus 78 ~~~~g~id~vi~~Ag~~~ 95 (287)
T PRK06194 78 LERFGAVHLLFNNAGVGA 95 (287)
T ss_pred HHHcCCCCEEEECCCCCC
Confidence 001235798888764433
No 371
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=55.63 E-value=42 Score=35.11 Aligned_cols=103 Identities=13% Similarity=0.134 Sum_probs=66.2
Q ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeeecCCCCCCCcccccCccccc
Q psy17365 208 PSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWT 287 (646)
Q Consensus 208 ~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~ 287 (646)
..-+++++|.+++-...|+.|+. +-.++.+...|...-..... ...++=-.||+|||.--.+-
T Consensus 109 ~qDRl~l~ELHp~D~~~L~~~f~--~d~~vrv~~~DG~~~l~a~L------PP~erRglVLIDPPfE~~~e--------- 171 (279)
T COG2961 109 EQDRLVLTELHPSDAPLLRNNFA--GDRRVRVLRGDGFLALKAHL------PPKERRGLVLIDPPFELKDE--------- 171 (279)
T ss_pred hhceeeeeecCccHHHHHHHHhC--CCcceEEEecCcHHHHhhhC------CCCCcceEEEeCCCcccccH---------
Confidence 35589999999999999999887 66789999999754221111 11234458999999443221
Q ss_pred cCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHcc
Q psy17365 288 KWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 288 ~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~ 342 (646)
-..+ .+-|+.+++-.. +|+. |-..|.-+-..+..|++...
T Consensus 172 ------Y~rv----v~~l~~~~kRf~-~g~y----aiWYPik~r~~~~~f~~~L~ 211 (279)
T COG2961 172 ------YQRV----VEALAEAYKRFA-TGTY----AIWYPIKDRRQIRRFLRALE 211 (279)
T ss_pred ------HHHH----HHHHHHHHHhhc-CceE----EEEEeecchHHHHHHHHHHh
Confidence 1111 123444444333 3432 45688999999999998764
No 372
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=55.34 E-value=71 Score=31.76 Aligned_cols=87 Identities=9% Similarity=-0.050 Sum_probs=51.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+..||=.+ |+|+...+++..+... ...|++.+.+..++..+...++..+ .++.++..|.+........-..-
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~------G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 78 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKE------GVNVGLLARTEENLKAVAEEVEAYG-VKVVIATADVSDYEEVTAAIEQL 78 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHhC-CeEEEEECCCCCHHHHHHHHHHH
Confidence 44666665 5788888888876521 3478999999888776666555444 35677788876542211000000
Q ss_pred CCCCCCCCeeecCCC
Q psy17365 258 NKVPMKFDRVLCDVP 272 (646)
Q Consensus 258 ~~~~~~FD~IL~D~P 272 (646)
.......|.|++.+.
T Consensus 79 ~~~~~~id~vi~~ag 93 (239)
T PRK07666 79 KNELGSIDILINNAG 93 (239)
T ss_pred HHHcCCccEEEEcCc
Confidence 001135788888664
No 373
>PRK12829 short chain dehydrogenase; Provisional
Probab=54.94 E-value=55 Score=32.92 Aligned_cols=87 Identities=14% Similarity=-0.030 Sum_probs=51.7
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
-++.+||=.+| .|+...+++..+... ...|++++.+...+..+.+...+. ++.++..|......+.....
T Consensus 9 ~~~~~vlItGa-~g~iG~~~a~~L~~~------g~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~~~~~~~ 78 (264)
T PRK12829 9 LDGLRVLVTGG-ASGIGRAIAEAFAEA------GARVHVCDVSEAALAATAARLPGA---KVTATVADVADPAQVERVFD 78 (264)
T ss_pred cCCCEEEEeCC-CCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhcC---ceEEEEccCCCHHHHHHHHH
Confidence 46778887766 588888888887532 236899999887766655443322 46777788775432110000
Q ss_pred CCCCCCCCCCeeecCCC
Q psy17365 256 DGNKVPMKFDRVLCDVP 272 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~P 272 (646)
.-......+|.|+..+.
T Consensus 79 ~~~~~~~~~d~vi~~ag 95 (264)
T PRK12829 79 TAVERFGGLDVLVNNAG 95 (264)
T ss_pred HHHHHhCCCCEEEECCC
Confidence 00001135888887653
No 374
>PRK07904 short chain dehydrogenase; Provisional
Probab=54.73 E-value=46 Score=33.93 Aligned_cols=67 Identities=15% Similarity=0.073 Sum_probs=46.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHH-HHHHHHHHHHcCCCCeEEEecCCCCCc
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNR-CYMLVHQAKRLNSPCAIITNHDASVMP 248 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~R-l~~L~~n~~rlg~~ni~v~~~Da~~~p 248 (646)
..+.+||=.+| .|+...++++.+... +.-.|++.+.+... ++.+.+.++..+..++.++..|.....
T Consensus 6 ~~~~~vlItGa-s~giG~~la~~l~~~-----gg~~V~~~~r~~~~~~~~~~~~l~~~~~~~v~~~~~D~~~~~ 73 (253)
T PRK07904 6 GNPQTILLLGG-TSEIGLAICERYLKN-----APARVVLAALPDDPRRDAAVAQMKAAGASSVEVIDFDALDTD 73 (253)
T ss_pred CCCcEEEEEcC-CcHHHHHHHHHHHhc-----CCCeEEEEeCCcchhHHHHHHHHHhcCCCceEEEEecCCChH
Confidence 34556665554 788888898876421 12378888888775 777777777766557888888887643
No 375
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=54.65 E-value=30 Score=32.24 Aligned_cols=89 Identities=11% Similarity=0.058 Sum_probs=55.4
Q ss_pred EcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCC--HHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCC
Q psy17365 184 MCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVD--NNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVP 261 (646)
Q Consensus 184 mCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis--~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~ 261 (646)
+..|.|+....++..+... +...|+....+ ..++..+.+.++..+ .++.++..|.+........-..-....
T Consensus 5 ItGa~~giG~~~a~~l~~~-----g~~~v~~~~r~~~~~~~~~l~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~~~ 78 (167)
T PF00106_consen 5 ITGASSGIGRALARALARR-----GARVVILTSRSEDSEGAQELIQELKAPG-AKITFIECDLSDPESIRALIEEVIKRF 78 (167)
T ss_dssp EETTTSHHHHHHHHHHHHT-----TTEEEEEEESSCHHHHHHHHHHHHHHTT-SEEEEEESETTSHHHHHHHHHHHHHHH
T ss_pred EECCCCHHHHHHHHHHHhc-----CceEEEEeeecccccccccccccccccc-ccccccccccccccccccccccccccc
Confidence 3455678888888877532 24578888888 788888888888777 678888888765322110000000113
Q ss_pred CCCCeeecCCCCCCCcc
Q psy17365 262 MKFDRVLCDVPCTGDGT 278 (646)
Q Consensus 262 ~~FD~IL~D~PCSG~G~ 278 (646)
..+|.++..+.....+.
T Consensus 79 ~~ld~li~~ag~~~~~~ 95 (167)
T PF00106_consen 79 GPLDILINNAGIFSDGS 95 (167)
T ss_dssp SSESEEEEECSCTTSBS
T ss_pred ccccccccccccccccc
Confidence 57899998665444443
No 376
>PRK07677 short chain dehydrogenase; Provisional
Probab=54.24 E-value=61 Score=32.67 Aligned_cols=86 Identities=7% Similarity=0.008 Sum_probs=50.0
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGN 258 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~ 258 (646)
.++|=. .|.|+...+++..+... ...|++.+.+..++..+...+...+ ..+.++..|.+........-..-.
T Consensus 2 k~~lIt-G~s~giG~~ia~~l~~~------G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~ 73 (252)
T PRK07677 2 KVVIIT-GGSSGMGKAMAKRFAEE------GANVVITGRTKEKLEEAKLEIEQFP-GQVLTVQMDVRNPEDVQKMVEQID 73 (252)
T ss_pred CEEEEe-CCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEecCCCHHHHHHHHHHHH
Confidence 456644 45667788888877522 2378889999888877766665544 356777788765321110000000
Q ss_pred CCCCCCCeeecCCC
Q psy17365 259 KVPMKFDRVLCDVP 272 (646)
Q Consensus 259 ~~~~~FD~IL~D~P 272 (646)
......|.|+..+-
T Consensus 74 ~~~~~id~lI~~ag 87 (252)
T PRK07677 74 EKFGRIDALINNAA 87 (252)
T ss_pred HHhCCccEEEECCC
Confidence 01135788887654
No 377
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=53.96 E-value=65 Score=32.65 Aligned_cols=83 Identities=10% Similarity=0.037 Sum_probs=48.4
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
+||=.+| .|+....++..+... ...|+..+.+...+..+.+.++..+ ++.++..|.+...........-..
T Consensus 2 ~vlItGa-s~gIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~Dv~d~~~~~~~~~~~~~ 72 (259)
T PRK08340 2 NVLVTAS-SRGIGFNVARELLKK------GARVVISSRNEENLEKALKELKEYG--EVYAVKADLSDKDDLKNLVKEAWE 72 (259)
T ss_pred eEEEEcC-CcHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEcCCCCHHHHHHHHHHHHH
Confidence 4555554 467788888877522 3478888999888877776665443 466777887653211000000001
Q ss_pred CCCCCCeeecCC
Q psy17365 260 VPMKFDRVLCDV 271 (646)
Q Consensus 260 ~~~~FD~IL~D~ 271 (646)
.....|.|+..+
T Consensus 73 ~~g~id~li~na 84 (259)
T PRK08340 73 LLGGIDALVWNA 84 (259)
T ss_pred hcCCCCEEEECC
Confidence 124689888765
No 378
>PRK07890 short chain dehydrogenase; Provisional
Probab=53.76 E-value=89 Score=31.35 Aligned_cols=87 Identities=11% Similarity=-0.013 Sum_probs=52.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+|| +.-|.|+...+++..+... ...|+..+.++..++.+...+...+. ++..+..|.+...........
T Consensus 4 ~~k~vl-ItGa~~~IG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~ 75 (258)
T PRK07890 4 KGKVVV-VSGVGPGLGRTLAVRAARA------GADVVLAARTAERLDEVAAEIDDLGR-RALAVPTDITDEDQCANLVAL 75 (258)
T ss_pred CCCEEE-EECCCCcHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHHhCC-ceEEEecCCCCHHHHHHHHHH
Confidence 355677 4455778889998887632 23788999999888777766665443 466777887653221000000
Q ss_pred CCCCCCCCCeeecCC
Q psy17365 257 GNKVPMKFDRVLCDV 271 (646)
Q Consensus 257 g~~~~~~FD~IL~D~ 271 (646)
-.......|.|+..+
T Consensus 76 ~~~~~g~~d~vi~~a 90 (258)
T PRK07890 76 ALERFGRVDALVNNA 90 (258)
T ss_pred HHHHcCCccEEEECC
Confidence 000123578888865
No 379
>PRK08339 short chain dehydrogenase; Provisional
Probab=53.61 E-value=1e+02 Score=31.55 Aligned_cols=86 Identities=8% Similarity=-0.062 Sum_probs=51.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
|..+|=.+ |.|+....+++.+... ...|+.++.+..++..+.+.+....-.++.++..|.+...........
T Consensus 8 ~k~~lItG-as~gIG~aia~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~~- 79 (263)
T PRK08339 8 GKLAFTTA-SSKGIGFGVARVLARA------GADVILLSRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERTVKE- 79 (263)
T ss_pred CCEEEEeC-CCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHHHHH-
Confidence 55666444 5567788888877531 347888999998888777766554334577778888764322100000
Q ss_pred CCCCCCCCeeecCC
Q psy17365 258 NKVPMKFDRVLCDV 271 (646)
Q Consensus 258 ~~~~~~FD~IL~D~ 271 (646)
.......|.++..+
T Consensus 80 ~~~~g~iD~lv~na 93 (263)
T PRK08339 80 LKNIGEPDIFFFST 93 (263)
T ss_pred HHhhCCCcEEEECC
Confidence 00124578877654
No 380
>PRK09186 flagellin modification protein A; Provisional
Probab=53.49 E-value=66 Score=32.24 Aligned_cols=87 Identities=17% Similarity=0.188 Sum_probs=50.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHH-cCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR-LNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~r-lg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
+.+|| +.-|+|+...+++..+... ...|+..+.+..++..+.+.+.. .+...+.++..|.+....+......
T Consensus 4 ~k~vl-ItGas~giG~~~a~~l~~~------g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~ 76 (256)
T PRK09186 4 GKTIL-ITGAGGLIGSALVKAILEA------GGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSK 76 (256)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHC------CCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHH
Confidence 44555 4455688899999887521 34788888888887777666543 2334455667787763221100000
Q ss_pred CCCCCCCCCeeecCC
Q psy17365 257 GNKVPMKFDRVLCDV 271 (646)
Q Consensus 257 g~~~~~~FD~IL~D~ 271 (646)
-.......|.|+..+
T Consensus 77 ~~~~~~~id~vi~~A 91 (256)
T PRK09186 77 SAEKYGKIDGAVNCA 91 (256)
T ss_pred HHHHcCCccEEEECC
Confidence 000123579888876
No 381
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=53.12 E-value=32 Score=35.79 Aligned_cols=49 Identities=10% Similarity=0.083 Sum_probs=37.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN 233 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg 233 (646)
-.+|+.|||-.+|+|....+. ..+ .-..+++|+++.-+..+...+.+..
T Consensus 220 s~~~diVlDpf~GsGtt~~aa-~~~---------~r~~ig~e~~~~y~~~~~~r~~~~~ 268 (302)
T COG0863 220 SFPGDIVLDPFAGSGTTGIAA-KNL---------GRRFIGIEINPEYVEVALKRLQEGL 268 (302)
T ss_pred CCCCCEEeecCCCCChHHHHH-HHc---------CCceEEEecCHHHHHHHHHHHHhhc
Confidence 468999999999999755443 333 2367889999999888888776543
No 382
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=51.73 E-value=1.2e+02 Score=32.47 Aligned_cols=101 Identities=18% Similarity=0.179 Sum_probs=56.9
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccc--ccc
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV--LYT 253 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~--~~~ 253 (646)
++|++||=.+ .|+....++++.... +.+.|++.+.+..+...+ +.+|+..+...+ ...+... ...
T Consensus 176 ~~g~~vlI~g--~g~vG~~~~~lak~~-----G~~~v~~~~~~~~~~~~~----~~~g~~~vi~~~--~~~~~~~~~~i~ 242 (361)
T cd08231 176 GAGDTVVVQG--AGPLGLYAVAAAKLA-----GARRVIVIDGSPERLELA----REFGADATIDID--ELPDPQRRAIVR 242 (361)
T ss_pred CCCCEEEEEC--CCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHH----HHcCCCeEEcCc--ccccHHHHHHHH
Confidence 4888888773 477666555554321 234789999999887655 356765432221 1111100 000
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
... ....+|.|+- |+|.+ ..+..+++.|+++|+++.
T Consensus 243 ~~~---~~~~~d~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 278 (361)
T cd08231 243 DIT---GGRGADVVIE---ASGHP-------------------------AAVPEGLELLRRGGTYVL 278 (361)
T ss_pred HHh---CCCCCcEEEE---CCCCh-------------------------HHHHHHHHHhccCCEEEE
Confidence 000 0135887762 55432 346778899999999984
No 383
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=51.61 E-value=1.6e+02 Score=29.31 Aligned_cols=85 Identities=16% Similarity=0.048 Sum_probs=49.7
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
+||= .-|.|+...+++..+... ...|++.+.+..+.+.+...+...+ .++.++..|..........-..-..
T Consensus 3 ~vlI-tGa~g~lG~~l~~~l~~~------g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~~~~~~~ 74 (255)
T TIGR01963 3 TALV-TGAASGIGLAIALALAAA------GANVVVNDLGEAGAEAAAKVATDAG-GSVIYLVADVTKEDEIADMIAAAAA 74 (255)
T ss_pred EEEE-cCCcchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEECCCCCHHHHHHHHHHHHH
Confidence 3443 346788888888876421 2379999999888877776665544 3567777887653311000000000
Q ss_pred CCCCCCeeecCCC
Q psy17365 260 VPMKFDRVLCDVP 272 (646)
Q Consensus 260 ~~~~FD~IL~D~P 272 (646)
.....|.|++.+-
T Consensus 75 ~~~~~d~vi~~a~ 87 (255)
T TIGR01963 75 EFGGLDILVNNAG 87 (255)
T ss_pred hcCCCCEEEECCC
Confidence 1134788887664
No 384
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=51.60 E-value=30 Score=36.19 Aligned_cols=60 Identities=18% Similarity=0.168 Sum_probs=39.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDA 244 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da 244 (646)
.+-++|+|++||-==.+.-.... .+....+|.|||..-++.+..-+..++.+ ..+...|.
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~--------~~~a~Y~a~DID~~~ve~l~~~l~~l~~~-~~~~v~Dl 163 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPE--------APGATYIAYDIDSQLVEFLNAFLAVLGVP-HDARVRDL 163 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTS--------STT-EEEEEESBHHHHHHHHHHHHHTT-C-EEEEEE-T
T ss_pred CCCchhhhhhccCCceehhhccc--------CCCcEEEEEeCCHHHHHHHHHHHHhhCCC-cceeEeee
Confidence 34569999999876665543211 13458999999999999999999999865 34444454
No 385
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=51.39 E-value=1.3e+02 Score=29.73 Aligned_cols=88 Identities=13% Similarity=-0.001 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+||=.| |.|+...+++..+... ...|++.+.+..++..+...+...+ .++.++..|......+......-
T Consensus 6 ~~~ilItG-asg~iG~~l~~~l~~~------g~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~Dl~~~~~~~~~~~~~ 77 (251)
T PRK12826 6 GRVALVTG-AARGIGRAIAVRLAAD------GAEVIVVDICGDDAAATAELVEAAG-GKARARQVDVRDRAALKAAVAAG 77 (251)
T ss_pred CCEEEEcC-CCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHH
Confidence 45677444 5688888888877521 2378999999877766666555443 34777788876532111000000
Q ss_pred CCCCCCCCeeecCCCC
Q psy17365 258 NKVPMKFDRVLCDVPC 273 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PC 273 (646)
......+|.|++.+..
T Consensus 78 ~~~~~~~d~vi~~ag~ 93 (251)
T PRK12826 78 VEDFGRLDILVANAGI 93 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 0011358888887643
No 386
>PRK08251 short chain dehydrogenase; Provisional
Probab=51.16 E-value=1.1e+02 Score=30.51 Aligned_cols=88 Identities=15% Similarity=0.021 Sum_probs=51.8
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEecCCCCCccccccCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-SPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
.+||= .-|+|+...++++.+... ...|++.+.+..++..+...+.... -.++.+...|.+...........-
T Consensus 3 k~vlI-tGas~giG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~ 75 (248)
T PRK08251 3 QKILI-TGASSGLGAGMAREFAAK------GRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVNDHDQVFEVFAEF 75 (248)
T ss_pred CEEEE-ECCCCHHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCCHHHHHHHHHHH
Confidence 35664 446788899998887522 2378888999988877766654332 235677788877642211000000
Q ss_pred CCCCCCCCeeecCCCC
Q psy17365 258 NKVPMKFDRVLCDVPC 273 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PC 273 (646)
.......|.|+..+-.
T Consensus 76 ~~~~~~id~vi~~ag~ 91 (248)
T PRK08251 76 RDELGGLDRVIVNAGI 91 (248)
T ss_pred HHHcCCCCEEEECCCc
Confidence 0112457988886643
No 387
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=50.88 E-value=93 Score=31.57 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=46.7
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.|..||=.+|+. +|....+|+.+... ...|+..+.+. +.. +.++.+....+.++..|.+........-.
T Consensus 6 ~~k~~lItGas~~~gIG~a~a~~la~~------G~~Vi~~~r~~-~~~---~~~~~~~~~~~~~~~~Dl~~~~~v~~~~~ 75 (252)
T PRK06079 6 SGKKIVVMGVANKRSIAWGCAQAIKDQ------GATVIYTYQND-RMK---KSLQKLVDEEDLLVECDVASDESIERAFA 75 (252)
T ss_pred CCCEEEEeCCCCCCchHHHHHHHHHHC------CCEEEEecCch-HHH---HHHHhhccCceeEEeCCCCCHHHHHHHHH
Confidence 356788888875 67888888887521 34677777763 322 22333322346677788765322110000
Q ss_pred CCCCCCCCCCeeecCC
Q psy17365 256 DGNKVPMKFDRVLCDV 271 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~ 271 (646)
.-......+|.++.++
T Consensus 76 ~~~~~~g~iD~lv~nA 91 (252)
T PRK06079 76 TIKERVGKIDGIVHAI 91 (252)
T ss_pred HHHHHhCCCCEEEEcc
Confidence 0001124689888765
No 388
>PLN02702 L-idonate 5-dehydrogenase
Probab=50.80 E-value=1.5e+02 Score=31.80 Aligned_cols=107 Identities=18% Similarity=0.224 Sum_probs=57.0
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+.+|+.||=.+ .|+....+++..... +...|+++|.+..+.+.+ +.+|.+.+.........+.....
T Consensus 177 ~~~~~g~~vlI~g--~g~vG~~~~~~a~~~-----G~~~v~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~~~ 245 (364)
T PLN02702 177 ANIGPETNVLVMG--AGPIGLVTMLAARAF-----GAPRIVIVDVDDERLSVA----KQLGADEIVLVSTNIEDVESEVE 245 (364)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHH----HHhCCCEEEecCcccccHHHHHH
Confidence 4567898888874 455444433333211 234688999998887654 34676543322111111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
.... .....+|.|+- |+|.+ ..+..++++|+++|++|.
T Consensus 246 ~~~~--~~~~~~d~vid---~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 283 (364)
T PLN02702 246 EIQK--AMGGGIDVSFD---CVGFN-------------------------KTMSTALEATRAGGKVCL 283 (364)
T ss_pred HHhh--hcCCCCCEEEE---CCCCH-------------------------HHHHHHHHHHhcCCEEEE
Confidence 0000 00125787763 45432 247788999999999874
No 389
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=50.63 E-value=1.9e+02 Score=30.56 Aligned_cols=37 Identities=16% Similarity=0.099 Sum_probs=30.1
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHH
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRC 222 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl 222 (646)
+..-+||=-|||-|..+-.||.+ .-.+.|||.|.-++
T Consensus 55 ~~~~~VLVPGsGLGRLa~Eia~~----------G~~~~gnE~S~~Ml 91 (270)
T PF07942_consen 55 RSKIRVLVPGSGLGRLAWEIAKL----------GYAVQGNEFSYFML 91 (270)
T ss_pred CCccEEEEcCCCcchHHHHHhhc----------cceEEEEEchHHHH
Confidence 34568999999999999999865 23689999998774
No 390
>PRK06197 short chain dehydrogenase; Provisional
Probab=50.60 E-value=1.5e+02 Score=30.95 Aligned_cols=88 Identities=8% Similarity=0.015 Sum_probs=51.6
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL-NSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl-g~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.|..|| +.-|.|+...+++..+... ...|+..+.+..+...+.+.+... +-..+.++..|............
T Consensus 15 ~~k~vl-ItGas~gIG~~~a~~l~~~------G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~v~~~~~ 87 (306)
T PRK06197 15 SGRVAV-VTGANTGLGYETAAALAAK------GAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTSLASVRAAAD 87 (306)
T ss_pred CCCEEE-EcCCCCcHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCCHHHHHHHHH
Confidence 355666 5566788899999877522 236888888888776655555432 22356677888876532210000
Q ss_pred CCCCCCCCCCeeecCC
Q psy17365 256 DGNKVPMKFDRVLCDV 271 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~ 271 (646)
.-......+|.|+..+
T Consensus 88 ~~~~~~~~iD~li~nA 103 (306)
T PRK06197 88 ALRAAYPRIDLLINNA 103 (306)
T ss_pred HHHhhCCCCCEEEECC
Confidence 0000124689998866
No 391
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=50.47 E-value=23 Score=36.68 Aligned_cols=86 Identities=12% Similarity=0.204 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCC-eEEEe-cCCC-CCcccc
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL-NSPC-AIITN-HDAS-VMPNVL 251 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl-g~~n-i~v~~-~Da~-~~p~~~ 251 (646)
.++-++||++.|--..- -+++.++ -.-..++-|+|+..+..++.++..+ +..+ |.+.. -|.. -|+.+.
T Consensus 77 ~~~i~~LDIGvGAnCIY----PliG~~e----YgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~~~if~gii 148 (292)
T COG3129 77 GKNIRILDIGVGANCIY----PLIGVHE----YGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDSDAIFNGII 148 (292)
T ss_pred cCceEEEeeccCccccc----cccccee----ecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCccccccccc
Confidence 45668999987654322 2232222 2457899999999999998888766 4433 33322 2222 122211
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCC
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGD 276 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~ 276 (646)
...+.||.+||+||-.+.
T Consensus 149 -------g~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 149 -------GKNERYDATLCNPPFHDS 166 (292)
T ss_pred -------cccceeeeEecCCCcchh
Confidence 113689999999996554
No 392
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=50.39 E-value=80 Score=33.46 Aligned_cols=99 Identities=21% Similarity=0.270 Sum_probs=51.1
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
.++|++||-.++ |+....++++.... +...|++.+.+.++..++. .+|...+ +..+...+..+..
T Consensus 161 ~~~g~~vlV~g~--g~vg~~~~~la~~~-----G~~~v~~~~~~~~~~~~~~----~~g~~~~--~~~~~~~~~~~~~-- 225 (341)
T cd05281 161 DVSGKSVLITGC--GPIGLMAIAVAKAA-----GASLVIASDPNPYRLELAK----KMGADVV--INPREEDVVEVKS-- 225 (341)
T ss_pred CCCCCEEEEECC--CHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHHH----HhCccee--eCcccccHHHHHH--
Confidence 468888887543 44433333333210 1225777788888776554 3565322 2111111111000
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV 319 (646)
.. ....+|.|+- |+|.+ ..+..+++.|+++|+++
T Consensus 226 ~~---~~~~vd~vld---~~g~~-------------------------~~~~~~~~~l~~~G~~v 259 (341)
T cd05281 226 VT---DGTGVDVVLE---MSGNP-------------------------KAIEQGLKALTPGGRVS 259 (341)
T ss_pred Hc---CCCCCCEEEE---CCCCH-------------------------HHHHHHHHHhccCCEEE
Confidence 00 0135887774 44422 34667788999999876
No 393
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=50.19 E-value=41 Score=34.36 Aligned_cols=78 Identities=13% Similarity=0.035 Sum_probs=52.9
Q ss_pred CCeEEEEcCCCc--hHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC-eEEEecCCCC-Ccccccc
Q psy17365 178 HHKVLDMCAAPG--SKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC-AIITNHDASV-MPNVLYT 253 (646)
Q Consensus 178 g~~VLDmCAaPG--gKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n-i~v~~~Da~~-~p~~~~~ 253 (646)
-..+++.|++-| ..|+.||.+.+. -.|+++++-.+...+....+.+..+|..+ +.++.+++.. +..
T Consensus 42 AkliVe~~s~g~~~~ttiaLaaAAr~------TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~---- 111 (218)
T PF07279_consen 42 AKLIVEAWSSGGAISTTIALAAAARQ------TGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMP---- 111 (218)
T ss_pred ceEEEEEecCCCchHhHHHHHHHHHh------cCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHh----
Confidence 346888876533 456666665442 47899999999888777778888888755 4777777532 211
Q ss_pred CCCCCCCCCCCCeeecCC
Q psy17365 254 DADGNKVPMKFDRVLCDV 271 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~ 271 (646)
.....|.+|+|.
T Consensus 112 ------~~~~iDF~vVDc 123 (218)
T PF07279_consen 112 ------GLKGIDFVVVDC 123 (218)
T ss_pred ------hccCCCEEEEeC
Confidence 124689999994
No 394
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=49.38 E-value=30 Score=32.16 Aligned_cols=39 Identities=28% Similarity=0.278 Sum_probs=26.2
Q ss_pred EEcCCCc--hHHHHHHHH-hhhcCCCCCCCcEEEEEcCCHHHHHHHHHH
Q psy17365 183 DMCAAPG--SKTAQIIEM-IHAADSNPVPSGLVVANDVDNNRCYMLVHQ 228 (646)
Q Consensus 183 DmCAaPG--gKT~~lae~-l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n 228 (646)
|+||.-| +.++..+.. .. +.+.|+|+|.++..+..|..+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~-------~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCG-------PGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS---------SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcC-------CCCEEEEEECCHHHHHHHhHH
Confidence 8999999 666665432 22 578999999999999999999
No 395
>PRK06949 short chain dehydrogenase; Provisional
Probab=49.08 E-value=1e+02 Score=30.91 Aligned_cols=88 Identities=14% Similarity=0.063 Sum_probs=52.5
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+||=.+ |.|+...+++..+... ...|++.+.+.+++..+...+...+. ++.++..|.+...........
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~------G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~~~~ 79 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQA------GAKVVLASRRVERLKELRAEIEAEGG-AAHVVSLDVTDYQSIKAAVAH 79 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEecCCCHHHHHHHHHH
Confidence 356677555 6778888888887521 23699999999988877776654432 466777787653211100000
Q ss_pred CCCCCCCCCeeecCCC
Q psy17365 257 GNKVPMKFDRVLCDVP 272 (646)
Q Consensus 257 g~~~~~~FD~IL~D~P 272 (646)
-.......|.|+..+.
T Consensus 80 ~~~~~~~~d~li~~ag 95 (258)
T PRK06949 80 AETEAGTIDILVNNSG 95 (258)
T ss_pred HHHhcCCCCEEEECCC
Confidence 0011235798888654
No 396
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=48.42 E-value=90 Score=32.88 Aligned_cols=46 Identities=24% Similarity=0.286 Sum_probs=28.7
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHH
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYML 225 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L 225 (646)
...+++|++||-.++ |+....++++... -...|++...+.++...+
T Consensus 154 ~~~l~~g~~vLI~g~--g~vG~~a~~lA~~------~g~~v~~~~~s~~~~~~~ 199 (337)
T cd08261 154 RAGVTAGDTVLVVGA--GPIGLGVIQVAKA------RGARVIVVDIDDERLEFA 199 (337)
T ss_pred hcCCCCCCEEEEECC--CHHHHHHHHHHHH------cCCeEEEECCCHHHHHHH
Confidence 346788999999843 4443333333321 135688888888877766
No 397
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=47.97 E-value=1.2e+02 Score=32.06 Aligned_cols=51 Identities=16% Similarity=0.036 Sum_probs=32.6
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCC
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNS 234 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~ 234 (646)
..+++|.+||=. |.|+....++++.... +...|++.+.+.++...+. ++|.
T Consensus 163 ~~~~~~~~vlI~--g~g~vg~~~~~~a~~~-----g~~~v~~~~~~~~~~~~~~----~~g~ 213 (344)
T cd08284 163 AQVRPGDTVAVI--GCGPVGLCAVLSAQVL-----GAARVFAVDPVPERLERAA----ALGA 213 (344)
T ss_pred cCCccCCEEEEE--CCcHHHHHHHHHHHHc-----CCceEEEEcCCHHHHHHHH----HhCC
Confidence 345678888866 3577776666665421 1236888888888866543 3664
No 398
>PRK05867 short chain dehydrogenase; Provisional
Probab=47.90 E-value=83 Score=31.67 Aligned_cols=86 Identities=12% Similarity=-0.019 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
|..||=.+| .|+...+++..+... ...|+..+.+..+++.+...++..+ .++.++..|.+...........-
T Consensus 9 ~k~vlVtGa-s~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~ 80 (253)
T PRK05867 9 GKRALITGA-STGIGKRVALAYVEA------GAQVAIAARHLDALEKLADEIGTSG-GKVVPVCCDVSQHQQVTSMLDQV 80 (253)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC------CCEEEEEcCCHHHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHHHH
Confidence 566776665 567788888877521 2378889999988888877776655 34666777876532211000000
Q ss_pred CCCCCCCCeeecCC
Q psy17365 258 NKVPMKFDRVLCDV 271 (646)
Q Consensus 258 ~~~~~~FD~IL~D~ 271 (646)
.......|.++..+
T Consensus 81 ~~~~g~id~lv~~a 94 (253)
T PRK05867 81 TAELGGIDIAVCNA 94 (253)
T ss_pred HHHhCCCCEEEECC
Confidence 00124688888765
No 399
>KOG0821|consensus
Probab=47.80 E-value=23 Score=36.35 Aligned_cols=61 Identities=16% Similarity=0.125 Sum_probs=45.2
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVM 247 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~ 247 (646)
..+.|..++-||||.|-.|+++ +..++..+|+|..-+.-|++-.+.... ...+...|+..+
T Consensus 50 ~~~~v~eIgPgpggitR~il~a---------~~~RL~vVE~D~RFip~LQ~L~EAa~~-~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 50 TNAYVYEIGPGPGGITRSILNA---------DVARLLVVEKDTRFIPGLQMLSEAAPG-KLRIHHGDVLRF 110 (326)
T ss_pred ccceeEEecCCCCchhHHHHhc---------chhheeeeeeccccChHHHHHhhcCCc-ceEEecccccee
Confidence 4678999999999999999876 355778889998877777766653332 456667777554
No 400
>PRK07454 short chain dehydrogenase; Provisional
Probab=47.76 E-value=1.1e+02 Score=30.54 Aligned_cols=61 Identities=11% Similarity=-0.093 Sum_probs=42.6
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVM 247 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~ 247 (646)
.+||=.+ |.|+....++..+... ...|++.+.+......+.+.++..+ .++.++..|.+..
T Consensus 7 k~vlItG-~sg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~ 67 (241)
T PRK07454 7 PRALITG-ASSGIGKATALAFAKA------GWDLALVARSQDALEALAAELRSTG-VKAAAYSIDLSNP 67 (241)
T ss_pred CEEEEeC-CCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhCC-CcEEEEEccCCCH
Confidence 3566555 5788889998887522 2379999999888777766665544 3466778888764
No 401
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=47.61 E-value=1.3e+02 Score=32.27 Aligned_cols=96 Identities=14% Similarity=0.088 Sum_probs=51.6
Q ss_pred CCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 175 VQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 175 ~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
+++|++||=.+ .|+....++++... -...|++.+.+.++...+ ++++|...+ +...+...+..
T Consensus 178 ~~~g~~vlV~G--~G~vG~~av~~Ak~------~G~~vi~~~~~~~~~~~~---~~~~Ga~~~-i~~~~~~~~~~----- 240 (357)
T PLN02514 178 KQSGLRGGILG--LGGVGHMGVKIAKA------MGHHVTVISSSDKKREEA---LEHLGADDY-LVSSDAAEMQE----- 240 (357)
T ss_pred CCCCCeEEEEc--ccHHHHHHHHHHHH------CCCeEEEEeCCHHHHHHH---HHhcCCcEE-ecCCChHHHHH-----
Confidence 36899988663 45555444443321 123577788777664433 245776422 11111111100
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
....+|.|+ | |+|.+ ..+..++++|++||++|.
T Consensus 241 -----~~~~~D~vi-d--~~g~~-------------------------~~~~~~~~~l~~~G~iv~ 273 (357)
T PLN02514 241 -----AADSLDYII-D--TVPVF-------------------------HPLEPYLSLLKLDGKLIL 273 (357)
T ss_pred -----hcCCCcEEE-E--CCCch-------------------------HHHHHHHHHhccCCEEEE
Confidence 012478766 3 44421 246778899999999885
No 402
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=47.56 E-value=1.5e+02 Score=31.43 Aligned_cols=52 Identities=13% Similarity=0.148 Sum_probs=33.1
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP 235 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ 235 (646)
.++++|++||=.+ .|+....++++.... +...|++.+.+.++.+.+. .+|..
T Consensus 168 ~~~~~g~~vlI~g--~g~vG~~a~q~a~~~-----G~~~v~~~~~~~~~~~~~~----~~ga~ 219 (351)
T cd08233 168 SGFKPGDTALVLG--AGPIGLLTILALKAA-----GASKIIVSEPSEARRELAE----ELGAT 219 (351)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHH----HhCCC
Confidence 4577898887764 366555555544311 2337899999999887663 35654
No 403
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.56 E-value=1.1e+02 Score=31.34 Aligned_cols=136 Identities=13% Similarity=0.027 Sum_probs=59.8
Q ss_pred CCeEEEEcCCCc-hHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPG-SKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPG-gKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
|..+|=.+|+.| |...++|+.+... ...|+..+.+....+.+.+..+..+. ..++..|.+...........
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~------G~~v~~~~r~~~~~~~~~~l~~~~g~--~~~~~~Dv~~~~~v~~~~~~ 79 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKH------GAELWFTYQSEVLEKRVKPLAEEIGC--NFVSELDVTNPKSISNLFDD 79 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHc------CCEEEEEeCchHHHHHHHHHHHhcCC--ceEEEccCCCHHHHHHHHHH
Confidence 456676666664 6777777776421 23566667664322233332233342 23456777653221100000
Q ss_pred CCCCCCCCCeeecCCCCCCCccc-ccCccc-cccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTM-RKNPDI-WTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~l-rk~pd~-~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
-.......|.++..+-....... ....+. ...|... ..........+++.++.+++.+|++|..+
T Consensus 80 ~~~~~g~iDilVnnag~~~~~~~~~~~~~~~~~~~~~~-~~vn~~~~~~~~~~~~~~m~~~G~Iv~is 146 (260)
T PRK06603 80 IKEKWGSFDFLLHGMAFADKNELKGRYVDTSLENFHNS-LHISCYSLLELSRSAEALMHDGGSIVTLT 146 (260)
T ss_pred HHHHcCCccEEEEccccCCcccccCccccCCHHHHHHH-HHHHHHHHHHHHHHHHhhhccCceEEEEe
Confidence 00112568987775432110000 000010 0112110 00111122345666677777889888653
No 404
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=47.50 E-value=1.5e+02 Score=30.63 Aligned_cols=87 Identities=17% Similarity=0.004 Sum_probs=46.2
Q ss_pred CCCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.|..+|=.+|+. +|....+|..+... ...|+..+.+....+.+.+..+.+|. ...+..|.+..........
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~------Ga~V~~~~r~~~~~~~~~~~~~~~g~--~~~~~~Dv~d~~~v~~~~~ 77 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQ------GAELAFTYQGEALGKRVKPLAESLGS--DFVLPCDVEDIASVDAVFE 77 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhC------CCEEEEecCchHHHHHHHHHHHhcCC--ceEEeCCCCCHHHHHHHHH
Confidence 356788888876 47788888877521 23677777665433333333333442 2356678765422110000
Q ss_pred CCCCCCCCCCeeecCC
Q psy17365 256 DGNKVPMKFDRVLCDV 271 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~ 271 (646)
.-.......|.++.++
T Consensus 78 ~~~~~~g~iD~lVnnA 93 (271)
T PRK06505 78 ALEKKWGKLDFVVHAI 93 (271)
T ss_pred HHHHHhCCCCEEEECC
Confidence 0001124689887765
No 405
>PRK09242 tropinone reductase; Provisional
Probab=47.48 E-value=1.1e+02 Score=30.74 Aligned_cols=133 Identities=8% Similarity=-0.079 Sum_probs=70.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL-NSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl-g~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
|..||=.+| .|+....++..+... ...|++.+.+...+..+..++... +-..+.++..|.+...........
T Consensus 9 ~k~~lItGa-~~gIG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 81 (257)
T PRK09242 9 GQTALITGA-SKGIGLAIAREFLGL------GADVLIVARDADALAQARDELAEEFPEREVHGLAADVSDDEDRRAILDW 81 (257)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCCHHHHHHHHHH
Confidence 556666555 567788888877532 346888999988887777666544 123466777787653211000000
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhh----HHHHHHHHHHHHHhhc--cCCeEEEEcCC
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNL----HGIQYRIVKRGVEMLA--VGGKIAYSTCS 324 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l----~~lQ~~IL~~A~~lLK--pGG~LVYSTCS 324 (646)
-......+|.|+..+ |.+.. .|. ..++.++.... ..-...+++.++.+++ .+|.+|+.++.
T Consensus 82 ~~~~~g~id~li~~a---g~~~~--~~~--~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~~ii~~sS~ 148 (257)
T PRK09242 82 VEDHWDGLHILVNNA---GGNIR--KAA--IDYTEDEWRGIFETNLFSAFELSRYAHPLLKQHASSAIVNIGSV 148 (257)
T ss_pred HHHHcCCCCEEEECC---CCCCC--CCh--hhCCHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCceEEEECcc
Confidence 001124688887644 32211 111 12222222211 1223345666666663 45888887664
No 406
>PRK07063 short chain dehydrogenase; Provisional
Probab=47.33 E-value=1.3e+02 Score=30.26 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-SPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
+.+||=.+| .|+...+++..+... ...|+..+.+..+++.+.+.+...+ -.++.++..|.+...........
T Consensus 7 ~k~vlVtGa-s~gIG~~~a~~l~~~------G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (260)
T PRK07063 7 GKVALVTGA-AQGIGAAIARAFARE------GAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAA 79 (260)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHH
Confidence 556775554 577888888877521 3478889999988887777665521 23466777887653221100000
Q ss_pred CCCCCCCCCeeecCC
Q psy17365 257 GNKVPMKFDRVLCDV 271 (646)
Q Consensus 257 g~~~~~~FD~IL~D~ 271 (646)
-......+|.++..+
T Consensus 80 ~~~~~g~id~li~~a 94 (260)
T PRK07063 80 AEEAFGPLDVLVNNA 94 (260)
T ss_pred HHHHhCCCcEEEECC
Confidence 000124688888755
No 407
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=47.07 E-value=26 Score=35.78 Aligned_cols=112 Identities=15% Similarity=0.123 Sum_probs=63.7
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGN 258 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~ 258 (646)
-++||+||=+..-..... +-=.|+++|+++. .-.|...|....|--.
T Consensus 53 lrlLEVGals~~N~~s~~-----------~~fdvt~IDLns~---------------~~~I~qqDFm~rplp~------- 99 (219)
T PF11968_consen 53 LRLLEVGALSTDNACSTS-----------GWFDVTRIDLNSQ---------------HPGILQQDFMERPLPK------- 99 (219)
T ss_pred ceEEeecccCCCCccccc-----------CceeeEEeecCCC---------------CCCceeeccccCCCCC-------
Confidence 589999875432111110 1224899998762 1235667776654210
Q ss_pred CCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCe-----EEEEc---CC-CCccc
Q psy17365 259 KVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGK-----IAYST---CS-LNPLE 329 (646)
Q Consensus 259 ~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~-----LVYST---CS-l~p~E 329 (646)
...++||+|.|- =++.--|+...+ -++|.+|.++|+++|. |...+ |- =+.-=
T Consensus 100 ~~~e~FdvIs~S------LVLNfVP~p~~R-------------G~Ml~r~~~fL~~~g~~~~~~LFlVlP~~Cv~NSRy~ 160 (219)
T PF11968_consen 100 NESEKFDVISLS------LVLNFVPDPKQR-------------GEMLRRAHKFLKPPGLSLFPSLFLVLPLPCVTNSRYM 160 (219)
T ss_pred CcccceeEEEEE------EEEeeCCCHHHH-------------HHHHHHHHHHhCCCCccCcceEEEEeCchHhhccccc
Confidence 123679998762 123333443223 2789999999999999 54432 32 12233
Q ss_pred cHHHHHHHHHHcc
Q psy17365 330 DEAVIQRLIVETQ 342 (646)
Q Consensus 330 NE~VV~~~L~~~~ 342 (646)
++....+++...+
T Consensus 161 ~~~~l~~im~~LG 173 (219)
T PF11968_consen 161 TEERLREIMESLG 173 (219)
T ss_pred CHHHHHHHHHhCC
Confidence 4666667776664
No 408
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=46.66 E-value=1.1e+02 Score=34.53 Aligned_cols=87 Identities=17% Similarity=0.147 Sum_probs=39.7
Q ss_pred CeEEEEcCCCc-hHHHHHHHHhhh---cCCCCCCCcEEEEEcCCHHH-HHHHHHHHHHcCCCCeEEEe-cCCCCCccccc
Q psy17365 179 HKVLDMCAAPG-SKTAQIIEMIHA---ADSNPVPSGLVVANDVDNNR-CYMLVHQAKRLNSPCAIITN-HDASVMPNVLY 252 (646)
Q Consensus 179 ~~VLDmCAaPG-gKT~~lae~l~~---~~~~~~~~G~VvA~Dis~~R-l~~L~~n~~rlg~~ni~v~~-~Da~~~p~~~~ 252 (646)
..|+=++.-+| |||+-++.+... ..+ ....+++.|....+ .+.|....++.|++...... .+...+.....
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~~~~g---~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~al 175 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLKKKQG---KKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRAL 175 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhCC---CeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHHH
Confidence 34555555555 588775554321 111 13345555544332 34455556667766332111 11111100000
Q ss_pred cCCCCCCCCCCCCeeecCCC
Q psy17365 253 TDADGNKVPMKFDRVLCDVP 272 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~P 272 (646)
.......+|.||+|.|
T Consensus 176 ----~~~~~~~~DvVIIDTa 191 (428)
T TIGR00959 176 ----EYAKENGFDVVIVDTA 191 (428)
T ss_pred ----HHHHhcCCCEEEEeCC
Confidence 0001246999999988
No 409
>PRK06701 short chain dehydrogenase; Provisional
Probab=46.63 E-value=1.1e+02 Score=32.08 Aligned_cols=134 Identities=8% Similarity=-0.003 Sum_probs=66.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCH-HHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDN-NRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~-~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
.+.+||=.+| .|+...+++..+... ...|+.++.+. ..+..+...++..+ .++.++..|.+....+...-.
T Consensus 45 ~~k~iLItGa-sggIG~~la~~l~~~------G~~V~l~~r~~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~ 116 (290)
T PRK06701 45 KGKVALITGG-DSGIGRAVAVLFAKE------GADIAIVYLDEHEDANETKQRVEKEG-VKCLLIPGDVSDEAFCKDAVE 116 (290)
T ss_pred CCCEEEEeCC-CcHHHHHHHHHHHHC------CCEEEEEeCCcchHHHHHHHHHHhcC-CeEEEEEccCCCHHHHHHHHH
Confidence 3566776664 677788888777522 23577777664 34444444444434 246677888765322110000
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccC-ccc-cccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKN-PDI-WTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~-pd~-~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
.-......+|.|+..+- .+..... .+. +..|. .........-..+++.++..++++|.+|+.+
T Consensus 117 ~i~~~~~~iD~lI~~Ag---~~~~~~~~~~~~~~~~~-~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 117 ETVRELGRLDILVNNAA---FQYPQQSLEDITAEQLD-KTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HHHHHcCCCCEEEECCc---ccCCCCCcccCCHHHHH-HHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 00001135788887553 2211110 000 00111 1111112234566777777778889998865
No 410
>PRK10083 putative oxidoreductase; Provisional
Probab=46.59 E-value=1.9e+02 Score=30.42 Aligned_cols=53 Identities=11% Similarity=0.090 Sum_probs=33.9
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP 235 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ 235 (646)
..+++|++||=.+ +|+....+++.....+ +...|++.|.++++..++. .+|..
T Consensus 156 ~~~~~g~~vlI~g--~g~vG~~~~~~a~~~~----G~~~v~~~~~~~~~~~~~~----~~Ga~ 208 (339)
T PRK10083 156 TGPTEQDVALIYG--AGPVGLTIVQVLKGVY----NVKAVIVADRIDERLALAK----ESGAD 208 (339)
T ss_pred cCCCCCCEEEEEC--CCHHHHHHHHHHHHhC----CCCEEEEEcCCHHHHHHHH----HhCCc
Confidence 4578899988766 3665555544432101 3456889999999877654 46764
No 411
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=46.57 E-value=33 Score=37.61 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=16.8
Q ss_pred HHHHHHHhhccCCeEEEEc
Q psy17365 304 IVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 304 IL~~A~~lLKpGG~LVYST 322 (646)
.+++-+.++.|||.||...
T Consensus 207 ~ie~lw~l~~~gg~lVivE 225 (484)
T COG5459 207 NIERLWNLLAPGGHLVIVE 225 (484)
T ss_pred HHHHHHHhccCCCeEEEEe
Confidence 7899999999999999753
No 412
>PRK06198 short chain dehydrogenase; Provisional
Probab=46.41 E-value=1.1e+02 Score=30.69 Aligned_cols=132 Identities=11% Similarity=0.092 Sum_probs=66.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+|| +..|.|+...++++.+... +.-.|++.+.+......+...+...+. .+.++..|.+........ .+.
T Consensus 6 ~k~vl-ItGa~g~iG~~la~~l~~~-----G~~~V~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~-~~~ 77 (260)
T PRK06198 6 GKVAL-VTGGTQGLGAAIARAFAER-----GAAGLVICGRNAEKGEAQAAELEALGA-KAVFVQADLSDVEDCRRV-VAA 77 (260)
T ss_pred CcEEE-EeCCCchHHHHHHHHHHHC-----CCCeEEEEcCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHH-HHH
Confidence 45666 4456788899998887522 122388899887766655555544432 355667777653211100 000
Q ss_pred -CCCCCCCCeeecCCCCCCCcccccCccccccCCcchh----hhhHHHHHHHHHHHHHhhcc---CCeEEEEcCC
Q psy17365 258 -NKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNG----NNLHGIQYRIVKRGVEMLAV---GGKIAYSTCS 324 (646)
Q Consensus 258 -~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~----~~l~~lQ~~IL~~A~~lLKp---GG~LVYSTCS 324 (646)
.......|.|+..+-.+..+.+. ..+.+.. .....-...+++.+++.++. .|.+|+.++.
T Consensus 78 ~~~~~g~id~li~~ag~~~~~~~~-------~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~iv~~ss~ 145 (260)
T PRK06198 78 ADEAFGRLDALVNAAGLTDRGTIL-------DTSPELFDRHFAVNVRAPFFLMQEAIKLMRRRKAEGTIVNIGSM 145 (260)
T ss_pred HHHHhCCCCEEEECCCcCCCCChh-------hCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCCEEEEECCc
Confidence 00013578888755433222111 1111111 11122234556666666533 4778876654
No 413
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=46.19 E-value=1.3e+02 Score=30.02 Aligned_cols=136 Identities=10% Similarity=-0.085 Sum_probs=65.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEE-EcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVA-NDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA-~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
+.+||=.+ |.|+...+++..+... ...|+. ...+..........+...+. ++.++..|.+........-..
T Consensus 6 ~~~vlitG-asg~iG~~l~~~l~~~------g~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~ 77 (252)
T PRK06077 6 DKVVVVTG-SGRGIGRAIAVRLAKE------GSLVVVNAKKRAEEMNETLKMVKENGG-EGIGVLADVSTREGCETLAKA 77 (252)
T ss_pred CcEEEEeC-CCChHHHHHHHHHHHC------CCEEEEEeCCChHHHHHHHHHHHHcCC-eeEEEEeccCCHHHHHHHHHH
Confidence 45677555 5678888888877522 223443 44455555444444555443 355666777653221100000
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
-.......|.|+..+-....+.+...++- .|. ............++..+.+.++.+|++|+.+..
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~~~~~~~~~--~~~-~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~sS~ 142 (252)
T PRK06077 78 TIDRYGVADILVNNAGLGLFSPFLNVDDK--LID-KHISTDFKSVIYCSQELAKEMREGGAIVNIASV 142 (252)
T ss_pred HHHHcCCCCEEEECCCCCCCCChhhCCHH--HHH-HHHhHhCHHHHHHHHHHHHHhhcCcEEEEEcch
Confidence 00011357988886644332221111100 000 001111122345666777777888998887643
No 414
>KOG2651|consensus
Probab=45.93 E-value=27 Score=38.60 Aligned_cols=41 Identities=17% Similarity=0.039 Sum_probs=30.1
Q ss_pred cccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHH
Q psy17365 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNN 220 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~ 220 (646)
.+.+--+-+.|+|++||+|..+..|+-. ..-.|+|+|-|..
T Consensus 147 si~~f~gi~~vvD~GaG~G~LSr~lSl~---------y~lsV~aIegsq~ 187 (476)
T KOG2651|consen 147 SISDFTGIDQVVDVGAGQGHLSRFLSLG---------YGLSVKAIEGSQR 187 (476)
T ss_pred HHHhhcCCCeeEEcCCCchHHHHHHhhc---------cCceEEEeccchH
Confidence 3344456678999999999888777532 3458999999843
No 415
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=45.46 E-value=1.6e+02 Score=31.76 Aligned_cols=105 Identities=15% Similarity=0.181 Sum_probs=58.2
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+++|++||=. |+|+....++++.... +...|++.+.+..+.+.+. .+|+..+.-.......+.....
T Consensus 179 ~~~~~g~~vlI~--g~g~vG~~a~~~a~~~-----G~~~v~~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~l~ 247 (365)
T cd05279 179 AKVTPGSTCAVF--GLGGVGLSVIMGCKAA-----GASRIIAVDINKDKFEKAK----QLGATECINPRDQDKPIVEVLT 247 (365)
T ss_pred cCCCCCCEEEEE--CCCHHHHHHHHHHHHc-----CCCeEEEEeCCHHHHHHHH----HhCCCeecccccccchHHHHHH
Confidence 457889998876 3466655555444311 2335888998988877663 3676432211110001111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhc-cCCeEEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLA-VGGKIAYS 321 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLK-pGG~LVYS 321 (646)
... ...+|.|+ | |+|.+ ..+..+++.|+ ++|+++..
T Consensus 248 -~~~----~~~~d~vi-d--~~g~~-------------------------~~~~~~~~~l~~~~G~~v~~ 284 (365)
T cd05279 248 -EMT----DGGVDYAF-E--VIGSA-------------------------DTLKQALDATRLGGGTSVVV 284 (365)
T ss_pred -HHh----CCCCcEEE-E--CCCCH-------------------------HHHHHHHHHhccCCCEEEEE
Confidence 000 13588877 3 55532 34677889999 99998854
No 416
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=45.41 E-value=86 Score=35.21 Aligned_cols=88 Identities=11% Similarity=0.046 Sum_probs=54.0
Q ss_pred CCCCeEEEEcCCCchHHHH-HHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQ-IIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~-lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
-+|++|+=+++||=|..+. ++..+ ...|+++|+++.|+..+. .+|.. ++..+ ..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~---------Ga~ViV~d~d~~R~~~A~----~~G~~---~~~~~-----e~---- 254 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQ---------GARVIVTEVDPICALQAA----MEGYE---VMTME-----EA---- 254 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHC---------CCEEEEEECChhhHHHHH----hcCCE---EccHH-----HH----
Confidence 4799999998887444333 33332 237888999999976553 45652 11111 10
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHH-HHhhccCCeEEEEc
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRG-VEMLAVGGKIAYST 322 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A-~~lLKpGG~LVYST 322 (646)
...+|.|+. |+|.. .++..+ ++++|+||+|+...
T Consensus 255 ------v~~aDVVI~---atG~~-------------------------~~i~~~~l~~mk~GgilvnvG 289 (413)
T cd00401 255 ------VKEGDIFVT---TTGNK-------------------------DIITGEHFEQMKDGAIVCNIG 289 (413)
T ss_pred ------HcCCCEEEE---CCCCH-------------------------HHHHHHHHhcCCCCcEEEEeC
Confidence 124787764 44421 345555 88999999998764
No 417
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=45.34 E-value=94 Score=31.07 Aligned_cols=86 Identities=12% Similarity=0.034 Sum_probs=49.8
Q ss_pred cCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCC
Q psy17365 185 CAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKF 264 (646)
Q Consensus 185 CAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~F 264 (646)
..|.|+...+++..+... ...|+.++.+..++..+.+.+...+. ++.++..|.+....+...-..-.......
T Consensus 6 tG~sg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dl~~~~~i~~~~~~~~~~~~~i 78 (254)
T TIGR02415 6 TGGAQGIGKGIAERLAKD------GFAVAVADLNEETAKETAKEINQAGG-KAVAYKLDVSDKDQVFSAIDQAAEKFGGF 78 (254)
T ss_pred eCCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHHHHHcCCC
Confidence 346788888888877522 23688888888887776666655443 46677788765322110000000011357
Q ss_pred CeeecCCCCCCCc
Q psy17365 265 DRVLCDVPCTGDG 277 (646)
Q Consensus 265 D~IL~D~PCSG~G 277 (646)
|.|+..+.....+
T Consensus 79 d~vi~~ag~~~~~ 91 (254)
T TIGR02415 79 DVMVNNAGVAPIT 91 (254)
T ss_pred CEEEECCCcCCCC
Confidence 8888877544433
No 418
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=44.98 E-value=25 Score=35.80 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=27.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHH
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYML 225 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L 225 (646)
++.+++|..||.|+.+..+... ...|++||++..-....
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~----------~~~vi~ND~~~~l~~~~ 58 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQP----------GKRVIINDINPDLINFW 58 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC-------------SSEEEEEES-HHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhccc----------ccceeeeechHHHHHHH
Confidence 6789999999999988776542 56899999999754443
No 419
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=44.86 E-value=1.1e+02 Score=32.33 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=31.3
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP 235 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ 235 (646)
.+++|++||=. |.|+....++++.... +...|++.+.+..+...+. .+|+.
T Consensus 163 ~~~~g~~vlI~--g~g~~g~~~~~~a~~~-----G~~~v~~~~~~~~~~~~~~----~~g~~ 213 (345)
T cd08286 163 KVKPGDTVAIV--GAGPVGLAALLTAQLY-----SPSKIIMVDLDDNRLEVAK----KLGAT 213 (345)
T ss_pred CCCCCCEEEEE--CCCHHHHHHHHHHHHc-----CCCeEEEEcCCHHHHHHHH----HhCCC
Confidence 46788887764 3366555444443311 2246888999998876654 35664
No 420
>KOG0919|consensus
Probab=44.85 E-value=16 Score=37.96 Aligned_cols=82 Identities=18% Similarity=0.276 Sum_probs=49.4
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHH-----HHcCCCCeEEEecCCCCCccccccC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQA-----KRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~-----~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
+||.+-+|-||.--.+-+. ..|.-.|-|+|++...=+.-.+|- +..++..+. ..+..
T Consensus 5 rVlelysg~ggmhyal~~a-------~ipaqiVaAiDvNtvANevY~~N~h~~L~k~~~I~~lt--~kefd--------- 66 (338)
T KOG0919|consen 5 RVLELYSGHGGMHYALEDA-------QIPAQIVAAIDVNTVANEVYAHNYHSNLVKTRNIQSLT--VKEFD--------- 66 (338)
T ss_pred ehhhhhhccchhhhhHhhh-------cCchhhEEEEecchhHHHHHhcCcccchhhccccceee--Hhhhh---------
Confidence 7899999999854333221 126678899999998766665551 111111111 11111
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccc
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDI 285 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~ 285 (646)
...+|.++.-|||-..-.+...-|+
T Consensus 67 ------~l~~~m~lMSPpCQPfTRiG~q~D~ 91 (338)
T KOG0919|consen 67 ------KLQANMLLMSPPCQPFTRIGLQRDT 91 (338)
T ss_pred ------hcccceEeeCCCCCchhhhcccccc
Confidence 2468999999999887655544444
No 421
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=44.29 E-value=1e+02 Score=33.65 Aligned_cols=94 Identities=15% Similarity=0.090 Sum_probs=51.3
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHH-HHHHHHHHHHcCCCCeEEEec-CCCCCcccccc
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNR-CYMLVHQAKRLNSPCAIITNH-DASVMPNVLYT 253 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~R-l~~L~~n~~rlg~~ni~v~~~-Da~~~p~~~~~ 253 (646)
++|+.||=.++ |+....++++.... ...|++++.+..+ ... ++.+|...+ ++. +...+..
T Consensus 177 ~~g~~VlV~G~--G~vG~~avq~Ak~~------Ga~Vi~~~~~~~~~~~~----a~~lGa~~~--i~~~~~~~v~~---- 238 (375)
T PLN02178 177 ESGKRLGVNGL--GGLGHIAVKIGKAF------GLRVTVISRSSEKEREA----IDRLGADSF--LVTTDSQKMKE---- 238 (375)
T ss_pred CCCCEEEEEcc--cHHHHHHHHHHHHc------CCeEEEEeCChHHhHHH----HHhCCCcEE--EcCcCHHHHHH----
Confidence 58999887654 55554444443311 2358888876543 333 345776432 221 1111100
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
. ...+|.|+ | |+|.. ..+..+++++++||++|..
T Consensus 239 -~-----~~~~D~vi-d--~~G~~-------------------------~~~~~~~~~l~~~G~iv~v 272 (375)
T PLN02178 239 -A-----VGTMDFII-D--TVSAE-------------------------HALLPLFSLLKVSGKLVAL 272 (375)
T ss_pred -h-----hCCCcEEE-E--CCCcH-------------------------HHHHHHHHhhcCCCEEEEE
Confidence 0 01378666 3 55532 2467788999999999853
No 422
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=44.14 E-value=30 Score=30.57 Aligned_cols=67 Identities=22% Similarity=0.102 Sum_probs=45.3
Q ss_pred CCCchHHHHHHHHhhhcCCCCCCCc-EEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCC
Q psy17365 186 AAPGSKTAQIIEMIHAADSNPVPSG-LVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKF 264 (646)
Q Consensus 186 AaPGgKT~~lae~l~~~~~~~~~~G-~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~F 264 (646)
+|-|..+.++++.+.. .+ .|+.+|.++.++..+... | +.++.+|++....+.. ......
T Consensus 4 ~G~g~~~~~i~~~L~~-------~~~~vvvid~d~~~~~~~~~~----~---~~~i~gd~~~~~~l~~------a~i~~a 63 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKE-------GGIDVVVIDRDPERVEELREE----G---VEVIYGDATDPEVLER------AGIEKA 63 (116)
T ss_dssp ES-SHHHHHHHHHHHH-------TTSEEEEEESSHHHHHHHHHT----T---SEEEES-TTSHHHHHH------TTGGCE
T ss_pred EcCCHHHHHHHHHHHh-------CCCEEEEEECCcHHHHHHHhc----c---cccccccchhhhHHhh------cCcccc
Confidence 5778899999999873 45 799999999997776542 3 5688899886432221 112467
Q ss_pred CeeecCCC
Q psy17365 265 DRVLCDVP 272 (646)
Q Consensus 265 D~IL~D~P 272 (646)
|.|++..+
T Consensus 64 ~~vv~~~~ 71 (116)
T PF02254_consen 64 DAVVILTD 71 (116)
T ss_dssp SEEEEESS
T ss_pred CEEEEccC
Confidence 88887544
No 423
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=43.93 E-value=1.7e+02 Score=31.78 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=58.3
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecC-CCCCcccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHD-ASVMPNVL 251 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~D-a~~~p~~~ 251 (646)
..+++|++||=. |.|+....++++.... +...|++.+.+..|.+++. .+|+..+.....+ -..+....
T Consensus 199 ~~~~~g~~VlV~--g~g~vG~~ai~lA~~~-----G~~~vi~~~~~~~~~~~~~----~~g~~~~v~~~~~~~~~~~~~v 267 (384)
T cd08265 199 GGFRPGAYVVVY--GAGPIGLAAIALAKAA-----GASKVIAFEISEERRNLAK----EMGADYVFNPTKMRDCLSGEKV 267 (384)
T ss_pred CCCCCCCEEEEE--CCCHHHHHHHHHHHHc-----CCCEEEEEcCCHHHHHHHH----HcCCCEEEcccccccccHHHHH
Confidence 357789998866 4577666655554321 2336899999888765543 4676433211111 00111100
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
..... ...+|.|+ | |+|.. ...+..+++.|+++|+++.
T Consensus 268 ~~~~~----g~gvDvvl-d--~~g~~------------------------~~~~~~~~~~l~~~G~~v~ 305 (384)
T cd08265 268 MEVTK----GWGADIQV-E--AAGAP------------------------PATIPQMEKSIAINGKIVY 305 (384)
T ss_pred HHhcC----CCCCCEEE-E--CCCCc------------------------HHHHHHHHHHHHcCCEEEE
Confidence 00001 13488776 4 45421 1346778889999999984
No 424
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=43.92 E-value=1.5e+02 Score=32.26 Aligned_cols=42 Identities=24% Similarity=0.386 Sum_probs=23.7
Q ss_pred CeEEEEcCCCchHHHHHHHHh----hhc--CC--CCCCCcEEEEEcCCHH
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMI----HAA--DS--NPVPSGLVVANDVDNN 220 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l----~~~--~~--~~~~~G~VvA~Dis~~ 220 (646)
-+|+|+||+.|.-|..+.+.+ ... .. ...+.-.|+-||.=..
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~N 67 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSN 67 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCc
Confidence 479999999999998766543 111 00 1223457888887444
No 425
>PRK06172 short chain dehydrogenase; Provisional
Probab=43.80 E-value=1.6e+02 Score=29.52 Aligned_cols=86 Identities=12% Similarity=-0.029 Sum_probs=52.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+||=.+| .|+....++..+... ...|++++.+.+++..+.+.++..+ .++.++..|......+...-..-
T Consensus 7 ~k~ilItGa-s~~iG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~D~~~~~~i~~~~~~~ 78 (253)
T PRK06172 7 GKVALVTGG-AAGIGRATALAFARE------GAKVVVADRDAAGGEETVALIREAG-GEALFVACDVTRDAEVKALVEQT 78 (253)
T ss_pred CCEEEEeCC-CchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHHH
Confidence 456766654 677788888777521 2479999999988877777776655 34677788886532211000000
Q ss_pred CCCCCCCCeeecCC
Q psy17365 258 NKVPMKFDRVLCDV 271 (646)
Q Consensus 258 ~~~~~~FD~IL~D~ 271 (646)
......+|.|+..+
T Consensus 79 ~~~~g~id~li~~a 92 (253)
T PRK06172 79 IAAYGRLDYAFNNA 92 (253)
T ss_pred HHHhCCCCEEEECC
Confidence 00123578888754
No 426
>KOG1331|consensus
Probab=43.69 E-value=41 Score=35.81 Aligned_cols=98 Identities=21% Similarity=0.210 Sum_probs=58.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.|..+||.+||-|--+ + ..|.-.+++.|++..-+ .-+++-|.. .+...|+...|.
T Consensus 45 ~gsv~~d~gCGngky~-------~-----~~p~~~~ig~D~c~~l~----~~ak~~~~~--~~~~ad~l~~p~------- 99 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYL-------G-----VNPLCLIIGCDLCTGLL----GGAKRSGGD--NVCRADALKLPF------- 99 (293)
T ss_pred CcceeeecccCCcccC-------c-----CCCcceeeecchhhhhc----cccccCCCc--eeehhhhhcCCC-------
Confidence 3778999999988432 1 11445688888765433 333444433 466778877663
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCe-EEEE
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGK-IAYS 321 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~-LVYS 321 (646)
....||.+|.=+--+. |+ -...-..+|++..+.|+|||. +||+
T Consensus 100 ---~~~s~d~~lsiavihh-------------ls------T~~RR~~~l~e~~r~lrpgg~~lvyv 143 (293)
T KOG1331|consen 100 ---REESFDAALSIAVIHH-------------LS------TRERRERALEELLRVLRPGGNALVYV 143 (293)
T ss_pred ---CCCccccchhhhhhhh-------------hh------hHHHHHHHHHHHHHHhcCCCceEEEE
Confidence 2356887764322111 11 112234678889999999996 5665
No 427
>PRK07774 short chain dehydrogenase; Provisional
Probab=43.27 E-value=98 Score=30.87 Aligned_cols=88 Identities=14% Similarity=0.064 Sum_probs=50.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+|| +.-|.|+...+++..+... .-.|+..+.+......+...+...+ .++..+..|.+...........-
T Consensus 6 ~k~vl-ItGasg~iG~~la~~l~~~------g~~vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~ 77 (250)
T PRK07774 6 DKVAI-VTGAAGGIGQAYAEALARE------GASVVVADINAEGAERVAKQIVADG-GTAIAVQVDVSDPDSAKAMADAT 77 (250)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHHHHHH
Confidence 44566 4557788999999887532 2378889988776665555544332 24556677876543211000000
Q ss_pred CCCCCCCCeeecCCCC
Q psy17365 258 NKVPMKFDRVLCDVPC 273 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PC 273 (646)
.......|.|+..+..
T Consensus 78 ~~~~~~id~vi~~ag~ 93 (250)
T PRK07774 78 VSAFGGIDYLVNNAAI 93 (250)
T ss_pred HHHhCCCCEEEECCCC
Confidence 0011358999986643
No 428
>KOG0822|consensus
Probab=42.99 E-value=87 Score=36.23 Aligned_cols=119 Identities=15% Similarity=0.104 Sum_probs=75.8
Q ss_pred eEEEEcCCCchHH---HHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC-CeEEEecCCCCCccccccCC
Q psy17365 180 KVLDMCAAPGSKT---AQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP-CAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 180 ~VLDmCAaPGgKT---~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~-ni~v~~~Da~~~p~~~~~~~ 255 (646)
.|+=+|||-|-.. ..+|+... .+-.++|+|.++..+-+|.. .+..... .|.++..|.+.++.-
T Consensus 370 VimvlGaGRGPLv~~~lkaa~~~~-------RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap----- 436 (649)
T KOG0822|consen 370 VIMVLGAGRGPLVDASLKAAEETD-------RKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAP----- 436 (649)
T ss_pred EEEEecCCCccHHHHHHHHHHHhc-------CceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCc-----
Confidence 4677899988654 44444432 36789999999999888865 4544444 488999999887521
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE-EEcCC-CCccccHHH
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA-YSTCS-LNPLEDEAV 333 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV-YSTCS-l~p~ENE~V 333 (646)
.++.|.++..- .|.+.-|. |+ -+-|+-|.++|||.|+-+ +|--| +.|+--...
T Consensus 437 -----~eq~DI~VSEL----LGSFGDNE-------------LS---PECLDG~q~fLkpdgIsIP~sYtSyi~PImS~~l 491 (649)
T KOG0822|consen 437 -----REQADIIVSEL----LGSFGDNE-------------LS---PECLDGAQKFLKPDGISIPSSYTSYIAPIMSPKL 491 (649)
T ss_pred -----hhhccchHHHh----hccccCcc-------------CC---HHHHHHHHhhcCCCceEccchhhhhhcccccHHH
Confidence 14678776542 23332221 11 146888999999999877 22223 666665443
Q ss_pred HHH
Q psy17365 334 IQR 336 (646)
Q Consensus 334 V~~ 336 (646)
-++
T Consensus 492 ~q~ 494 (649)
T KOG0822|consen 492 YQE 494 (649)
T ss_pred HHH
Confidence 333
No 429
>PRK07478 short chain dehydrogenase; Provisional
Probab=42.93 E-value=1.2e+02 Score=30.47 Aligned_cols=87 Identities=10% Similarity=-0.025 Sum_probs=52.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+..|| +.-|.|+...+++..+... ...|+..+.+...+..+...++..+. ++.++..|.............-
T Consensus 6 ~k~~l-ItGas~giG~~ia~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~~~~~~ 77 (254)
T PRK07478 6 GKVAI-ITGASSGIGRAAAKLFARE------GAKVVVGARRQAELDQLVAEIRAEGG-EAVALAGDVRDEAYAKALVALA 77 (254)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEcCCCCHHHHHHHHHHH
Confidence 44566 4555678888888877521 23788889999888888777766553 4666777876532211000000
Q ss_pred CCCCCCCCeeecCCC
Q psy17365 258 NKVPMKFDRVLCDVP 272 (646)
Q Consensus 258 ~~~~~~FD~IL~D~P 272 (646)
.......|.++..+-
T Consensus 78 ~~~~~~id~li~~ag 92 (254)
T PRK07478 78 VERFGGLDIAFNNAG 92 (254)
T ss_pred HHhcCCCCEEEECCC
Confidence 001236898888764
No 430
>PRK06139 short chain dehydrogenase; Provisional
Probab=42.72 E-value=1.3e+02 Score=32.34 Aligned_cols=88 Identities=11% Similarity=0.097 Sum_probs=54.1
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+..|| +.-|+|+...+++..+... ...|+..+.+..+++.+.+.++..|. .+.++..|.+...........-
T Consensus 7 ~k~vl-ITGAs~GIG~aia~~la~~------G~~Vvl~~R~~~~l~~~~~~~~~~g~-~~~~~~~Dv~d~~~v~~~~~~~ 78 (330)
T PRK06139 7 GAVVV-ITGASSGIGQATAEAFARR------GARLVLAARDEEALQAVAEECRALGA-EVLVVPTDVTDADQVKALATQA 78 (330)
T ss_pred CCEEE-EcCCCCHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEeeCCCHHHHHHHHHHH
Confidence 44565 5556788888888877532 34788899999999888888877664 3556667776532211000000
Q ss_pred CCCCCCCCeeecCCCC
Q psy17365 258 NKVPMKFDRVLCDVPC 273 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PC 273 (646)
......+|.++..+-.
T Consensus 79 ~~~~g~iD~lVnnAG~ 94 (330)
T PRK06139 79 ASFGGRIDVWVNNVGV 94 (330)
T ss_pred HHhcCCCCEEEECCCc
Confidence 0012468998886643
No 431
>PRK07062 short chain dehydrogenase; Provisional
Probab=42.44 E-value=1.4e+02 Score=30.26 Aligned_cols=88 Identities=9% Similarity=-0.033 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-SPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
|..+|=.+ |+|+...+++..+.. ....|++.+.+..++..+.+.+.... -.++.++..|.+...........
T Consensus 8 ~k~~lItG-as~giG~~ia~~l~~------~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~ 80 (265)
T PRK07062 8 GRVAVVTG-GSSGIGLATVELLLE------AGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAA 80 (265)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHH------CCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHH
Confidence 55666555 556777888887752 13478999999988877766665432 23566777787664321100000
Q ss_pred CCCCCCCCCeeecCCC
Q psy17365 257 GNKVPMKFDRVLCDVP 272 (646)
Q Consensus 257 g~~~~~~FD~IL~D~P 272 (646)
-.......|.++..+-
T Consensus 81 ~~~~~g~id~li~~Ag 96 (265)
T PRK07062 81 VEARFGGVDMLVNNAG 96 (265)
T ss_pred HHHhcCCCCEEEECCC
Confidence 0011245788887653
No 432
>PRK05866 short chain dehydrogenase; Provisional
Probab=42.38 E-value=1.2e+02 Score=31.70 Aligned_cols=62 Identities=16% Similarity=0.129 Sum_probs=42.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVM 247 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~ 247 (646)
+.+|| +..|.|+...++++.+... ...|++.+.+..+++.+...+...+. .+.++..|....
T Consensus 40 ~k~vl-ItGasggIG~~la~~La~~------G~~Vi~~~R~~~~l~~~~~~l~~~~~-~~~~~~~Dl~d~ 101 (293)
T PRK05866 40 GKRIL-LTGASSGIGEAAAEQFARR------GATVVAVARREDLLDAVADRITRAGG-DAMAVPCDLSDL 101 (293)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence 34565 4556788888998887521 34789999999888877777665543 356677787653
No 433
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=42.34 E-value=2.1e+02 Score=29.52 Aligned_cols=134 Identities=14% Similarity=0.018 Sum_probs=64.0
Q ss_pred CCeEEEEcCC-CchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAA-PGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAa-PGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
|..+|=.+|+ .+|....+|+.+... ...|+..+.+....+.+.+..+.++ .+.++..|.+...........
T Consensus 10 ~k~~lItGas~~~GIG~aia~~la~~------G~~V~l~~r~~~~~~~~~~l~~~~~--~~~~~~~Dl~~~~~v~~~~~~ 81 (272)
T PRK08159 10 GKRGLILGVANNRSIAWGIAKACRAA------GAELAFTYQGDALKKRVEPLAAELG--AFVAGHCDVTDEASIDAVFET 81 (272)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHC------CCEEEEEcCchHHHHHHHHHHHhcC--CceEEecCCCCHHHHHHHHHH
Confidence 5567777776 478999999888631 2356666554322233333333344 244567787653221100000
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhh----HHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNL----HGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l----~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
-.......|.++.++--...+... .| +...+.++.... ..-...+++.++.+++.+|.+|..+
T Consensus 82 ~~~~~g~iD~lv~nAG~~~~~~~~-~~--~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~is 148 (272)
T PRK08159 82 LEKKWGKLDFVVHAIGFSDKDELT-GR--YVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLT 148 (272)
T ss_pred HHHhcCCCcEEEECCcccCccccc-cC--cccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEe
Confidence 001124689888876322110000 00 001111111111 1223456667777777788887654
No 434
>PRK05855 short chain dehydrogenase; Validated
Probab=42.29 E-value=82 Score=35.71 Aligned_cols=88 Identities=14% Similarity=-0.031 Sum_probs=54.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.++| +.-|+|+...+++..+... .-.|+.++.+...+..+...++..|. ++.++..|.+...........-
T Consensus 315 ~~~~l-v~G~s~giG~~~a~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dv~~~~~~~~~~~~~ 386 (582)
T PRK05855 315 GKLVV-VTGAGSGIGRETALAFARE------GAEVVASDIDEAAAERTAELIRAAGA-VAHAYRVDVSDADAMEAFAEWV 386 (582)
T ss_pred CCEEE-EECCcCHHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEcCCCCHHHHHHHHHHH
Confidence 45666 4455788888888887632 23688889998888877777766554 5677788887643221000000
Q ss_pred CCCCCCCCeeecCCCC
Q psy17365 258 NKVPMKFDRVLCDVPC 273 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PC 273 (646)
.......|.|+..+-.
T Consensus 387 ~~~~g~id~lv~~Ag~ 402 (582)
T PRK05855 387 RAEHGVPDIVVNNAGI 402 (582)
T ss_pred HHhcCCCcEEEECCcc
Confidence 0112458988886643
No 435
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=42.22 E-value=1.7e+02 Score=29.61 Aligned_cols=89 Identities=15% Similarity=-0.045 Sum_probs=51.7
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+||=.++ .|+...+++..+... ...|+..+.+..++..+...++..+. .+.++..|.+...........
T Consensus 9 ~~k~~lItGa-~~~iG~~ia~~l~~~------G~~vv~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~ 80 (265)
T PRK07097 9 KGKIALITGA-SYGIGFAIAKAYAKA------GATIVFNDINQELVDKGLAAYRELGI-EAHGYVCDVTDEDGVQAMVSQ 80 (265)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEcCCCCHHHHHHHHHH
Confidence 3445665554 466777887776521 34678889998888777777766553 466777887654221100000
Q ss_pred CCCCCCCCCeeecCCCC
Q psy17365 257 GNKVPMKFDRVLCDVPC 273 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PC 273 (646)
-.......|.|+..+-.
T Consensus 81 ~~~~~~~id~li~~ag~ 97 (265)
T PRK07097 81 IEKEVGVIDILVNNAGI 97 (265)
T ss_pred HHHhCCCCCEEEECCCC
Confidence 00012458988887643
No 436
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=42.21 E-value=1.6e+02 Score=29.66 Aligned_cols=87 Identities=10% Similarity=0.052 Sum_probs=49.9
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHc-CCCCeEEEecCCCCCccccccCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRL-NSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rl-g~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
..||=.+ |.|+...+++..+... ...|+.+|.+...+..+...++.. +...+.++..|.+....+...-..-
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~------g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~~~~~ 75 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEE------GYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATSEQSVLALSRGV 75 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHC------CCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCCHHHHHHHHHHH
Confidence 3566555 4678888888877521 347888999888777666555432 2235777788876532211000000
Q ss_pred CCCCCCCCeeecCCC
Q psy17365 258 NKVPMKFDRVLCDVP 272 (646)
Q Consensus 258 ~~~~~~FD~IL~D~P 272 (646)
.......|.|+..+-
T Consensus 76 ~~~~~~id~vv~~ag 90 (259)
T PRK12384 76 DEIFGRVDLLVYNAG 90 (259)
T ss_pred HHHcCCCCEEEECCC
Confidence 001135788887653
No 437
>PRK05717 oxidoreductase; Validated
Probab=42.17 E-value=1.2e+02 Score=30.49 Aligned_cols=86 Identities=19% Similarity=0.105 Sum_probs=49.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
|.+||=.+ |.|+...+++..+... ...|+..|.+..+...+.+. ++ .++.++..|.+........-..-
T Consensus 10 ~k~vlItG-~sg~IG~~~a~~l~~~------g~~v~~~~~~~~~~~~~~~~---~~-~~~~~~~~Dl~~~~~~~~~~~~~ 78 (255)
T PRK05717 10 GRVALVTG-AARGIGLGIAAWLIAE------GWQVVLADLDRERGSKVAKA---LG-ENAWFIAMDVADEAQVAAGVAEV 78 (255)
T ss_pred CCEEEEeC-CcchHHHHHHHHHHHc------CCEEEEEcCCHHHHHHHHHH---cC-CceEEEEccCCCHHHHHHHHHHH
Confidence 55677554 4688889998887521 34788889887766554332 33 24667788877642211000000
Q ss_pred CCCCCCCCeeecCCCCC
Q psy17365 258 NKVPMKFDRVLCDVPCT 274 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCS 274 (646)
......+|.|+..+...
T Consensus 79 ~~~~g~id~li~~ag~~ 95 (255)
T PRK05717 79 LGQFGRLDALVCNAAIA 95 (255)
T ss_pred HHHhCCCCEEEECCCcc
Confidence 00123589998876543
No 438
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=41.97 E-value=2.5e+02 Score=29.31 Aligned_cols=93 Identities=15% Similarity=0.257 Sum_probs=54.3
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
...+++|..||=. |.|+....++++... ....|++.+.+..+.+.+ +.+|...+ ++.+. .+
T Consensus 162 ~~~~~~~~~vlV~--g~g~vg~~~~~la~~------~g~~v~~~~~~~~~~~~~----~~~g~~~~--~~~~~--~~--- 222 (329)
T cd08298 162 LAGLKPGQRLGLY--GFGASAHLALQIARY------QGAEVFAFTRSGEHQELA----RELGADWA--GDSDD--LP--- 222 (329)
T ss_pred hhCCCCCCEEEEE--CCcHHHHHHHHHHHH------CCCeEEEEcCChHHHHHH----HHhCCcEE--eccCc--cC---
Confidence 3456788888775 456655555544431 134788888888776655 34565321 11111 00
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
...+|.++. |++.+ ..+..+++.|++||+++.
T Consensus 223 ---------~~~vD~vi~---~~~~~-------------------------~~~~~~~~~l~~~G~~v~ 254 (329)
T cd08298 223 ---------PEPLDAAII---FAPVG-------------------------ALVPAALRAVKKGGRVVL 254 (329)
T ss_pred ---------CCcccEEEE---cCCcH-------------------------HHHHHHHHHhhcCCEEEE
Confidence 124787663 33322 357788999999999884
No 439
>PRK05876 short chain dehydrogenase; Provisional
Probab=41.54 E-value=1.6e+02 Score=30.36 Aligned_cols=87 Identities=11% Similarity=-0.039 Sum_probs=50.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
|..||=.+ |.|+...++++.+... ...|+..|.+..++..+.+.++..+. .+.++..|.+...........-
T Consensus 6 ~k~vlVTG-as~gIG~ala~~La~~------G~~Vv~~~r~~~~l~~~~~~l~~~~~-~~~~~~~Dv~d~~~v~~~~~~~ 77 (275)
T PRK05876 6 GRGAVITG-GASGIGLATGTEFARR------GARVVLGDVDKPGLRQAVNHLRAEGF-DVHGVMCDVRHREEVTHLADEA 77 (275)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHHH
Confidence 55677544 4677888888887532 23688889998887776666654443 3566777876543211000000
Q ss_pred CCCCCCCCeeecCCC
Q psy17365 258 NKVPMKFDRVLCDVP 272 (646)
Q Consensus 258 ~~~~~~FD~IL~D~P 272 (646)
.......|.|+..+-
T Consensus 78 ~~~~g~id~li~nAg 92 (275)
T PRK05876 78 FRLLGHVDVVFSNAG 92 (275)
T ss_pred HHHcCCCCEEEECCC
Confidence 011235788887664
No 440
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=41.32 E-value=1.5e+02 Score=30.65 Aligned_cols=134 Identities=13% Similarity=-0.008 Sum_probs=64.5
Q ss_pred CCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
|..||=.+|+. +|....+|..+... ...|+..+.+....+.+.+..+.++.. .++..|.+...........
T Consensus 5 ~k~~lItGas~~~GIG~aiA~~la~~------G~~Vil~~r~~~~~~~~~~~~~~~~~~--~~~~~Dv~d~~~v~~~~~~ 76 (274)
T PRK08415 5 GKKGLIVGVANNKSIAYGIAKACFEQ------GAELAFTYLNEALKKRVEPIAQELGSD--YVYELDVSKPEHFKSLAES 76 (274)
T ss_pred CcEEEEECCCCCCCHHHHHHHHHHHC------CCEEEEEecCHHHHHHHHHHHHhcCCc--eEEEecCCCHHHHHHHHHH
Confidence 55777777764 67888888877521 236777787753223333333444433 4566787764321100000
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhh----hHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNN----LHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~----l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
-......+|.++.++--...... ...+...+.++... ...-...+.+.++..++.+|++|+.+
T Consensus 77 i~~~~g~iDilVnnAG~~~~~~~---~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 77 LKKDLGKIDFIVHSVAFAPKEAL---EGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred HHHHcCCCCEEEECCccCccccc---ccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 00112568988876532110000 00000111111111 11112345667777777889888754
No 441
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=41.17 E-value=82 Score=37.48 Aligned_cols=72 Identities=17% Similarity=0.189 Sum_probs=41.7
Q ss_pred CCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcC-CCCccccHHHHHHHHH
Q psy17365 261 PMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTC-SLNPLEDEAVIQRLIV 339 (646)
Q Consensus 261 ~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTC-Sl~p~ENE~VV~~~L~ 339 (646)
...+|.|+||+--.... ...++-..+-+.+..+|..+|+|+|=|- |..-.++..++..+=.
T Consensus 413 ~~~idLiv~DmEV~d~~------------------~~~kIe~~l~~~~~~ll~~~gtLIfKTYlt~l~~~~~~il~~lg~ 474 (675)
T PF14314_consen 413 NLSIDLIVMDMEVRDDS------------------IIRKIEDNLRDYVHSLLEEPGTLIFKTYLTRLLSPDYNILDLLGR 474 (675)
T ss_pred CCcccEEEEeceecChH------------------HHHHHHHHHHHHHHHhcCCCcEEEEehhHhhhhcchhhHHHHHHh
Confidence 46799999998622222 2223334556677789999999998663 3222223234443333
Q ss_pred HccCcEEEeecc
Q psy17365 340 ETQGAVQLVDVS 351 (646)
Q Consensus 340 ~~~~~~elv~~~ 351 (646)
.+ ..++++...
T Consensus 475 ~F-~~V~l~qT~ 485 (675)
T PF14314_consen 475 YF-KSVELVQTQ 485 (675)
T ss_pred hc-CceEEEECC
Confidence 33 357776543
No 442
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=40.99 E-value=94 Score=30.88 Aligned_cols=87 Identities=15% Similarity=0.028 Sum_probs=50.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+||=. .|+|+...+++..+... .-.|++.+.++.++..+...+.. + .++.+...|.............-
T Consensus 5 ~~~vlIt-Gasg~iG~~l~~~l~~~------G~~V~~~~r~~~~~~~~~~~~~~-~-~~~~~~~~D~~~~~~~~~~~~~~ 75 (251)
T PRK07231 5 GKVAIVT-GASSGIGEGIARRFAAE------GARVVVTDRNEEAAERVAAEILA-G-GRAIAVAADVSDEADVEAAVAAA 75 (251)
T ss_pred CcEEEEE-CCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHhc-C-CeEEEEECCCCCHHHHHHHHHHH
Confidence 3455544 55678888888776521 23699999999887776665544 2 34667778876543221000000
Q ss_pred CCCCCCCCeeecCCCC
Q psy17365 258 NKVPMKFDRVLCDVPC 273 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PC 273 (646)
......+|.|+..+..
T Consensus 76 ~~~~~~~d~vi~~ag~ 91 (251)
T PRK07231 76 LERFGSVDILVNNAGT 91 (251)
T ss_pred HHHhCCCCEEEECCCC
Confidence 0012368999887654
No 443
>PRK06196 oxidoreductase; Provisional
Probab=40.97 E-value=1.7e+02 Score=30.76 Aligned_cols=83 Identities=6% Similarity=-0.059 Sum_probs=49.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
|..||=.+ |.|+...+++..+... ...|++.+.+..++..+...+. .+.++..|.+....+......-
T Consensus 26 ~k~vlITG-asggIG~~~a~~L~~~------G~~Vv~~~R~~~~~~~~~~~l~-----~v~~~~~Dl~d~~~v~~~~~~~ 93 (315)
T PRK06196 26 GKTAIVTG-GYSGLGLETTRALAQA------GAHVIVPARRPDVAREALAGID-----GVEVVMLDLADLESVRAFAERF 93 (315)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhh-----hCeEEEccCCCHHHHHHHHHHH
Confidence 45666444 5688888888877521 2378888998887765554432 2566778877643221000000
Q ss_pred CCCCCCCCeeecCCC
Q psy17365 258 NKVPMKFDRVLCDVP 272 (646)
Q Consensus 258 ~~~~~~FD~IL~D~P 272 (646)
.......|.|+..+.
T Consensus 94 ~~~~~~iD~li~nAg 108 (315)
T PRK06196 94 LDSGRRIDILINNAG 108 (315)
T ss_pred HhcCCCCCEEEECCC
Confidence 011246899998774
No 444
>PRK07814 short chain dehydrogenase; Provisional
Probab=40.66 E-value=1.7e+02 Score=29.74 Aligned_cols=63 Identities=13% Similarity=-0.003 Sum_probs=44.1
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVM 247 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~ 247 (646)
.+.+||=.+ |.|+...++++.+... ...|+..+.+...++.+...++..+. .+.++..|.+..
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~------G~~Vi~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~ 71 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEA------GADVLIAARTESQLDEVAEQIRAAGR-RAHVVAADLAHP 71 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCH
Confidence 466777666 4778889998877532 34789999998887777776665443 466677787654
No 445
>PRK08643 acetoin reductase; Validated
Probab=40.64 E-value=1.8e+02 Score=29.10 Aligned_cols=84 Identities=13% Similarity=0.005 Sum_probs=51.1
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
.|| +.-|.|+...++++.+... ...|+..+.+..++..+...+...+ .++.++..|.+....+......-..
T Consensus 4 ~~l-ItGas~giG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~Dl~~~~~~~~~~~~~~~ 75 (256)
T PRK08643 4 VAL-VTGAGQGIGFAIAKRLVED------GFKVAIVDYNEETAQAAADKLSKDG-GKAIAVKADVSDRDQVFAAVRQVVD 75 (256)
T ss_pred EEE-EECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHhcC-CeEEEEECCCCCHHHHHHHHHHHHH
Confidence 444 5567788899999887521 3378889999888877777666554 3466777887764321100000000
Q ss_pred CCCCCCeeecCC
Q psy17365 260 VPMKFDRVLCDV 271 (646)
Q Consensus 260 ~~~~FD~IL~D~ 271 (646)
.....|.|+..+
T Consensus 76 ~~~~id~vi~~a 87 (256)
T PRK08643 76 TFGDLNVVVNNA 87 (256)
T ss_pred HcCCCCEEEECC
Confidence 123578888755
No 446
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=40.55 E-value=1.5e+02 Score=30.37 Aligned_cols=98 Identities=22% Similarity=0.321 Sum_probs=53.7
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
.+++|+.||=.+ ++|+....++++... -...|++...+.++.+.+. .+|+..+.. . + ..+... ..
T Consensus 139 ~~~~g~~vlV~g-a~g~~g~~~~~~a~~------~g~~v~~~~~~~~~~~~~~----~~g~~~~~~-~-~-~~~~~~-i~ 203 (320)
T cd08243 139 GLQPGDTLLIRG-GTSSVGLAALKLAKA------LGATVTATTRSPERAALLK----ELGADEVVI-D-D-GAIAEQ-LR 203 (320)
T ss_pred CCCCCCEEEEEc-CCChHHHHHHHHHHH------cCCEEEEEeCCHHHHHHHH----hcCCcEEEe-c-C-ccHHHH-HH
Confidence 467888888554 345544444443321 1235888888888766553 367643321 1 1 111110 00
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
.. ...+|.|| | |+|. ..+..+++.|+++|+++.
T Consensus 204 ~~-----~~~~d~vl-~--~~~~--------------------------~~~~~~~~~l~~~g~~v~ 236 (320)
T cd08243 204 AA-----PGGFDKVL-E--LVGT--------------------------ATLKDSLRHLRPGGIVCM 236 (320)
T ss_pred Hh-----CCCceEEE-E--CCCh--------------------------HHHHHHHHHhccCCEEEE
Confidence 01 13588887 2 5542 246677899999998863
No 447
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=40.38 E-value=2.2e+02 Score=30.39 Aligned_cols=82 Identities=12% Similarity=-0.023 Sum_probs=47.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+||=.+ |.|....++++.+... .-.|++.+.+......+...... ..++.++..|......+..
T Consensus 10 ~~~vLVtG-~~GfIG~~l~~~L~~~------G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~Dl~~~~~~~~----- 75 (353)
T PLN02896 10 TGTYCVTG-ATGYIGSWLVKLLLQR------GYTVHATLRDPAKSLHLLSKWKE--GDRLRLFRADLQEEGSFDE----- 75 (353)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC------CCEEEEEeCChHHHHHHHHhhcc--CCeEEEEECCCCCHHHHHH-----
Confidence 45777544 5799999999887521 23688887776554433332221 2457777888765422110
Q ss_pred CCCCCCCCeeecCCCCCC
Q psy17365 258 NKVPMKFDRVLCDVPCTG 275 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCSG 275 (646)
....+|.|+.-+..++
T Consensus 76 --~~~~~d~Vih~A~~~~ 91 (353)
T PLN02896 76 --AVKGCDGVFHVAASME 91 (353)
T ss_pred --HHcCCCEEEECCcccc
Confidence 0124788887665443
No 448
>PRK08265 short chain dehydrogenase; Provisional
Probab=40.28 E-value=1.2e+02 Score=30.78 Aligned_cols=83 Identities=13% Similarity=-0.010 Sum_probs=46.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+||=.+ |.|+...+++..+... ...|+..+.+...+..+... ++ ..+.++..|.+........-..-
T Consensus 6 ~k~vlItG-as~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~---~~-~~~~~~~~Dl~~~~~~~~~~~~~ 74 (261)
T PRK08265 6 GKVAIVTG-GATLIGAAVARALVAA------GARVAIVDIDADNGAAVAAS---LG-ERARFIATDITDDAAIERAVATV 74 (261)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHH---hC-CeeEEEEecCCCHHHHHHHHHHH
Confidence 44666444 5677888888877521 23788889988766555433 33 24667778877542211000000
Q ss_pred CCCCCCCCeeecCC
Q psy17365 258 NKVPMKFDRVLCDV 271 (646)
Q Consensus 258 ~~~~~~FD~IL~D~ 271 (646)
.......|.++..+
T Consensus 75 ~~~~g~id~lv~~a 88 (261)
T PRK08265 75 VARFGRVDILVNLA 88 (261)
T ss_pred HHHhCCCCEEEECC
Confidence 00123578888765
No 449
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=40.18 E-value=2.4e+02 Score=28.48 Aligned_cols=88 Identities=3% Similarity=-0.099 Sum_probs=46.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEE-cCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAN-DVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~-Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
|.+|| +.-|.|+...+++..+... ...|+.. ..+.++++.+...++...-..+.++..|.+...........
T Consensus 8 ~k~vl-ItGas~gIG~~ia~~l~~~------G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~ 80 (260)
T PRK08416 8 GKTLV-ISGGTRGIGKAIVYEFAQS------GVNIAFTYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKELFKK 80 (260)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHC------CCEEEEEcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHHHHH
Confidence 55666 4445677788888777521 2245544 45666766665555432223467778887764221100000
Q ss_pred CCCCCCCCCeeecCCC
Q psy17365 257 GNKVPMKFDRVLCDVP 272 (646)
Q Consensus 257 g~~~~~~FD~IL~D~P 272 (646)
-......+|.++.++-
T Consensus 81 ~~~~~g~id~lv~nAg 96 (260)
T PRK08416 81 IDEDFDRVDFFISNAI 96 (260)
T ss_pred HHHhcCCccEEEECcc
Confidence 0011246898888763
No 450
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=40.17 E-value=1.3e+02 Score=32.45 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=59.8
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+++|+.||=. |.|+....+++..... +...|++.|.+..+.+++. .+|.. .++..-..+.....
T Consensus 172 ~~~~~g~~vlI~--g~g~vg~~~~~~a~~~-----G~~~vi~~~~~~~~~~~~~----~~g~~---~v~~~~~~~~~~i~ 237 (375)
T cd08282 172 AGVQPGDTVAVF--GAGPVGLMAAYSAILR-----GASRVYVVDHVPERLDLAE----SIGAI---PIDFSDGDPVEQIL 237 (375)
T ss_pred cCCCCCCEEEEE--CCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHHH----HcCCe---EeccCcccHHHHHH
Confidence 346789998874 3466555554444311 1226888999998877654 35642 12111111110000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
.. . ...+|.|+- |+|....+++.+++. ...+..+++.|+++|+++.
T Consensus 238 -~~-~---~~~~d~v~d---~~g~~~~~~~~~~~~--------------~~~~~~~~~~l~~~g~~~~ 283 (375)
T cd08282 238 -GL-E---PGGVDRAVD---CVGYEARDRGGEAQP--------------NLVLNQLIRVTRPGGGIGI 283 (375)
T ss_pred -Hh-h---CCCCCEEEE---CCCCcccccccccch--------------HHHHHHHHHHhhcCcEEEE
Confidence 00 0 124787763 777554444433211 1346778999999999863
No 451
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=40.13 E-value=1.9e+02 Score=29.14 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=51.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+||=.+ |.|+...+++..+... ...|+..+.+..++..+...++..+. .+.++..|.+........-..-
T Consensus 11 ~k~vlVtG-~s~gIG~~la~~l~~~------G~~vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~i~~~~~~~ 82 (255)
T PRK06113 11 GKCAIITG-AGAGIGKEIAITFATA------GASVVVSDINADAANHVVDEIQQLGG-QAFACRCDITSEQELSALADFA 82 (255)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHhcCC-cEEEEEccCCCHHHHHHHHHHH
Confidence 56777766 4567778888777521 23677888888888777766665543 3566778877543211000000
Q ss_pred CCCCCCCCeeecCCC
Q psy17365 258 NKVPMKFDRVLCDVP 272 (646)
Q Consensus 258 ~~~~~~FD~IL~D~P 272 (646)
......+|.|+..+-
T Consensus 83 ~~~~~~~d~li~~ag 97 (255)
T PRK06113 83 LSKLGKVDILVNNAG 97 (255)
T ss_pred HHHcCCCCEEEECCC
Confidence 001245788887654
No 452
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=39.41 E-value=4.7e+02 Score=29.23 Aligned_cols=37 Identities=14% Similarity=0.051 Sum_probs=24.8
Q ss_pred HHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHH
Q psy17365 303 RIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVE 340 (646)
Q Consensus 303 ~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~ 340 (646)
..+....+.+++|-.+|.. .|+.|...+.+...+.+.
T Consensus 100 ~~~~~i~~~l~~g~iVI~~-STv~pgtt~~~~~~l~~~ 136 (415)
T PRK11064 100 AAAKSIAPVLKKGDLVILE-STSPVGATEQMAEWLAEA 136 (415)
T ss_pred HHHHHHHHhCCCCCEEEEe-CCCCCCHHHHHHHHHHHh
Confidence 3445666778886665554 577888888877766654
No 453
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=39.12 E-value=3.4e+02 Score=30.30 Aligned_cols=50 Identities=22% Similarity=0.268 Sum_probs=29.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHh----hhcC---CCCCCCcEEEEEcCCHHHHHHHHH
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMI----HAAD---SNPVPSGLVVANDVDNNRCYMLVH 227 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l----~~~~---~~~~~~G~VvA~Dis~~Rl~~L~~ 227 (646)
.-.|+|++||+|..|..++..+ .... +...|.-.|+-||.-..-...|-.
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~ 120 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQ 120 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHh
Confidence 4589999999999887654432 2110 111234567778875444333333
No 454
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=39.04 E-value=36 Score=36.66 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHc
Q psy17365 302 YRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVET 341 (646)
Q Consensus 302 ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~ 341 (646)
.+.|..|..+|+|||+|+.- |++..|+- +|..+++..
T Consensus 220 ~~~L~~~~~~L~~gGrl~VI--SfHSLEDR-iVK~~f~~~ 256 (305)
T TIGR00006 220 EEALQFAPNLLAPGGRLSII--SFHSLEDR-IVKNFFREL 256 (305)
T ss_pred HHHHHHHHHHhcCCCEEEEE--ecCcHHHH-HHHHHHHHh
Confidence 46789999999999999864 78888885 677777654
No 455
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=39.04 E-value=2.1e+02 Score=28.34 Aligned_cols=87 Identities=8% Similarity=-0.007 Sum_probs=51.5
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+..||=.+| .|+...+++..+... .-.|+..+.+......+...++..+ .++.++..|.......... ...
T Consensus 3 ~~~ilItGa-s~~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~d~~~~~~~~~~-~~~ 73 (250)
T TIGR03206 3 DKTAIVTGG-GGGIGGATCRRFAEE------GAKVAVFDLNREAAEKVAADIRAKG-GNAQAFACDITDRDSVDTA-VAA 73 (250)
T ss_pred CCEEEEeCC-CChHHHHHHHHHHHC------CCEEEEecCCHHHHHHHHHHHHhcC-CcEEEEEcCCCCHHHHHHH-HHH
Confidence 456665554 678888888877521 2378889999888777776665543 3467778887653221100 000
Q ss_pred -CCCCCCCCeeecCCCC
Q psy17365 258 -NKVPMKFDRVLCDVPC 273 (646)
Q Consensus 258 -~~~~~~FD~IL~D~PC 273 (646)
.......|.|+..+..
T Consensus 74 ~~~~~~~~d~vi~~ag~ 90 (250)
T TIGR03206 74 AEQALGPVDVLVNNAGW 90 (250)
T ss_pred HHHHcCCCCEEEECCCC
Confidence 0001357888876643
No 456
>PRK06940 short chain dehydrogenase; Provisional
Probab=38.87 E-value=1.9e+02 Score=29.76 Aligned_cols=114 Identities=10% Similarity=-0.057 Sum_probs=61.2
Q ss_pred chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCCCeee
Q psy17365 189 GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVL 268 (646)
Q Consensus 189 GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~FD~IL 268 (646)
|+...++++.+. ....|++.|.+...+..+.+.++..+. .+.++..|.+........ .........+|.|+
T Consensus 11 ~gIG~~la~~l~-------~G~~Vv~~~r~~~~~~~~~~~l~~~~~-~~~~~~~Dv~d~~~i~~~-~~~~~~~g~id~li 81 (275)
T PRK06940 11 GGIGQAIARRVG-------AGKKVLLADYNEENLEAAAKTLREAGF-DVSTQEVDVSSRESVKAL-AATAQTLGPVTGLV 81 (275)
T ss_pred ChHHHHHHHHHh-------CCCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHH-HHHHHhcCCCCEEE
Confidence 689999998884 135788899988877766666654442 466677787654321100 00000124689888
Q ss_pred cCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 269 CDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 269 ~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
..+-... ..+ .|... ......-...+++.++..++.+|.+|+.
T Consensus 82 ~nAG~~~------~~~---~~~~~-~~vN~~g~~~l~~~~~~~m~~~g~iv~i 124 (275)
T PRK06940 82 HTAGVSP------SQA---SPEAI-LKVDLYGTALVLEEFGKVIAPGGAGVVI 124 (275)
T ss_pred ECCCcCC------chh---hHHHH-HHHhhHHHHHHHHHHHHHHhhCCCEEEE
Confidence 7653211 011 12110 1111122235566666777667766554
No 457
>PRK08278 short chain dehydrogenase; Provisional
Probab=38.68 E-value=1.3e+02 Score=30.92 Aligned_cols=131 Identities=8% Similarity=-0.092 Sum_probs=65.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHH-------HHHHHHHHHHcCCCCeEEEecCCCCCccc
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNR-------CYMLVHQAKRLNSPCAIITNHDASVMPNV 250 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~R-------l~~L~~n~~rlg~~ni~v~~~Da~~~p~~ 250 (646)
+.+|| +.-|.|+...+++..+... ...|++++.+... +..+...+...+. ++.+...|.+....+
T Consensus 6 ~k~vl-ItGas~gIG~~ia~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~D~~~~~~i 77 (273)
T PRK08278 6 GKTLF-ITGASRGIGLAIALRAARD------GANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGG-QALPLVGDVRDEDQV 77 (273)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHC------CCEEEEEecccccccchhhHHHHHHHHHHhcCC-ceEEEEecCCCHHHH
Confidence 44666 5556788899999887521 2367777766432 3333334444333 466777887764322
Q ss_pred cccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhh----hhHHHHHHHHHHHHHhhcc--CCeEEEEcC
Q psy17365 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGN----NLHGIQYRIVKRGVEMLAV--GGKIAYSTC 323 (646)
Q Consensus 251 ~~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~----~l~~lQ~~IL~~A~~lLKp--GG~LVYSTC 323 (646)
......-......+|.|+..+.....+.+. .++.++.. ....-...+++.+...++. +|.+|+.+.
T Consensus 78 ~~~~~~~~~~~g~id~li~~ag~~~~~~~~-------~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~~~g~iv~iss 149 (273)
T PRK08278 78 AAAVAKAVERFGGIDICVNNASAINLTGTE-------DTPMKRFDLMQQINVRGTFLVSQACLPHLKKSENPHILTLSP 149 (273)
T ss_pred HHHHHHHHHHhCCCCEEEECCCCcCCCCcc-------cCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 100000000113689999876433322211 11211111 1112234556666666643 577776654
No 458
>KOG3201|consensus
Probab=38.65 E-value=33 Score=33.73 Aligned_cols=123 Identities=12% Similarity=0.133 Sum_probs=63.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC---CCCeEEEecCCCCCccccccC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN---SPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg---~~ni~v~~~Da~~~p~~~~~~ 254 (646)
|.+||++++|-=+.+..|... ..+...|.-.|-+.+.++-++.-..++- .+.+.+...+--.-
T Consensus 30 g~~ilelgggft~laglmia~-------~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~a------- 95 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIAC-------KAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGA------- 95 (201)
T ss_pred HHHHHHhcCchhhhhhhheee-------ecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhh-------
Confidence 567888886643333322211 1256678888988887766655444431 12221111110000
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccHHHH
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVI 334 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV 334 (646)
........||.|||- -| + -+......+.+....+|+|-|+-+++ .|..- .-.
T Consensus 96 -qsq~eq~tFDiIlaA-DC----l-----------------FfdE~h~sLvdtIk~lL~p~g~Al~f----sPRRg-~sL 147 (201)
T KOG3201|consen 96 -QSQQEQHTFDIILAA-DC----L-----------------FFDEHHESLVDTIKSLLRPSGRALLF----SPRRG-QSL 147 (201)
T ss_pred -HHHHhhCcccEEEec-cc----h-----------------hHHHHHHHHHHHHHHHhCcccceeEe----cCccc-chH
Confidence 000123579999971 12 1 12333456777888899998875544 34333 244
Q ss_pred HHHHHHcc
Q psy17365 335 QRLIVETQ 342 (646)
Q Consensus 335 ~~~L~~~~ 342 (646)
+.|+...+
T Consensus 148 ~kF~de~~ 155 (201)
T KOG3201|consen 148 QKFLDEVG 155 (201)
T ss_pred HHHHHHHH
Confidence 55665543
No 459
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=38.58 E-value=2.2e+02 Score=30.45 Aligned_cols=102 Identities=15% Similarity=0.138 Sum_probs=55.1
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+.+|++||-. + .|+....++++.... +...|++.+.+..+...+. .+|+.. ++..+...+.....
T Consensus 178 ~~~~~g~~vLI~-g-~g~vG~a~i~lak~~-----G~~~Vi~~~~~~~~~~~~~----~~g~~~--vv~~~~~~~~~~l~ 244 (363)
T cd08279 178 ARVRPGDTVAVI-G-CGGVGLNAIQGARIA-----GASRIIAVDPVPEKLELAR----RFGATH--TVNASEDDAVEAVR 244 (363)
T ss_pred cCCCCCCEEEEE-C-CCHHHHHHHHHHHHc-----CCCcEEEEcCCHHHHHHHH----HhCCeE--EeCCCCccHHHHHH
Confidence 356789999887 3 355544444443311 2335889998888876553 356532 22222111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV 319 (646)
.. .....+|.||- |++.+ ..+..+++.|+++|+++
T Consensus 245 -~~---~~~~~vd~vld---~~~~~-------------------------~~~~~~~~~l~~~G~~v 279 (363)
T cd08279 245 -DL---TDGRGADYAFE---AVGRA-------------------------ATIRQALAMTRKGGTAV 279 (363)
T ss_pred -HH---cCCCCCCEEEE---cCCCh-------------------------HHHHHHHHHhhcCCeEE
Confidence 00 00135887762 44432 34677889999999887
No 460
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=38.50 E-value=1.6e+02 Score=31.12 Aligned_cols=100 Identities=22% Similarity=0.275 Sum_probs=52.2
Q ss_pred CCCCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccC
Q psy17365 176 QTHHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTD 254 (646)
Q Consensus 176 ~pg~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~ 254 (646)
.+|++||=.++|+ |..+.++|..+ +...|++.+.+..+.+++. .+|...+ +...-..+..... .
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~--------G~~~v~~~~~~~~~~~~~~----~lg~~~~--~~~~~~~~~~~~~-~ 226 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHV--------GARHVVITDVNEYRLELAR----KMGATRA--VNVAKEDLRDVMA-E 226 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHc--------CCCEEEEEcCCHHHHHHHH----HhCCcEE--ecCccccHHHHHH-H
Confidence 4788888754322 33344444443 2335777788888776543 4566432 2221111111100 0
Q ss_pred CCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEE
Q psy17365 255 ADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321 (646)
Q Consensus 255 ~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYS 321 (646)
. .....+|.|+- |.|.+ ..+..+++.|+++|+++..
T Consensus 227 ~---~~~~~~d~v~d---~~g~~-------------------------~~~~~~~~~l~~~G~~v~~ 262 (341)
T PRK05396 227 L---GMTEGFDVGLE---MSGAP-------------------------SAFRQMLDNMNHGGRIAML 262 (341)
T ss_pred h---cCCCCCCEEEE---CCCCH-------------------------HHHHHHHHHHhcCCEEEEE
Confidence 0 00134787763 44432 3466778899999998754
No 461
>PRK12744 short chain dehydrogenase; Provisional
Probab=38.28 E-value=1.4e+02 Score=30.01 Aligned_cols=132 Identities=17% Similarity=0.112 Sum_probs=64.0
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCC----HHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVD----NNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis----~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
+.+|| +..|.|+...++++.+... ...|+.++.+ ......+...++..+. ++.++..|.+........
T Consensus 8 ~k~vl-ItGa~~gIG~~~a~~l~~~------G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~D~~~~~~~~~~ 79 (257)
T PRK12744 8 GKVVL-IAGGAKNLGGLIARDLAAQ------GAKAVAIHYNSAASKADAEETVAAVKAAGA-KAVAFQADLTTAAAVEKL 79 (257)
T ss_pred CcEEE-EECCCchHHHHHHHHHHHC------CCcEEEEecCCccchHHHHHHHHHHHHhCC-cEEEEecCcCCHHHHHHH
Confidence 45666 4446778888888887521 2244444432 3334444444444442 466778887654322100
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhh----hHHHHHHHHHHHHHhhccCCeEEEEcCC
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNN----LHGIQYRIVKRGVEMLAVGGKIAYSTCS 324 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~----l~~lQ~~IL~~A~~lLKpGG~LVYSTCS 324 (646)
...-.......|.|+..+ |. ....+ ...++.++... ....-..+++.++..++++|.+++.+.|
T Consensus 80 ~~~~~~~~~~id~li~~a---g~--~~~~~--~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~~~ss 147 (257)
T PRK12744 80 FDDAKAAFGRPDIAINTV---GK--VLKKP--IVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVTLVTS 147 (257)
T ss_pred HHHHHHhhCCCCEEEECC---cc--cCCCC--cccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEEEecc
Confidence 000000123578888654 22 11111 11122222211 1111234677777788888888876555
No 462
>PRK05872 short chain dehydrogenase; Provisional
Probab=38.24 E-value=1.5e+02 Score=30.99 Aligned_cols=87 Identities=11% Similarity=0.095 Sum_probs=48.8
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.|..||=. -|.|+...++++.+... ...|+..+.+..+++.+.+.+.. + ..+..+..|.+...........
T Consensus 8 ~gk~vlIt-Gas~gIG~~ia~~l~~~------G~~V~~~~r~~~~l~~~~~~l~~-~-~~~~~~~~Dv~d~~~v~~~~~~ 78 (296)
T PRK05872 8 AGKVVVVT-GAARGIGAELARRLHAR------GAKLALVDLEEAELAALAAELGG-D-DRVLTVVADVTDLAAMQAAAEE 78 (296)
T ss_pred CCCEEEEE-CCCchHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHhcC-C-CcEEEEEecCCCHHHHHHHHHH
Confidence 46677754 45677888888887521 23788899998887766554321 1 2344445776653221100000
Q ss_pred CCCCCCCCCeeecCCC
Q psy17365 257 GNKVPMKFDRVLCDVP 272 (646)
Q Consensus 257 g~~~~~~FD~IL~D~P 272 (646)
-.......|.|+..+-
T Consensus 79 ~~~~~g~id~vI~nAG 94 (296)
T PRK05872 79 AVERFGGIDVVVANAG 94 (296)
T ss_pred HHHHcCCCCEEEECCC
Confidence 0001246899998763
No 463
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=38.18 E-value=2.4e+02 Score=29.71 Aligned_cols=105 Identities=13% Similarity=0.210 Sum_probs=57.6
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
..+++|+.||=. |.|+....++++.... +...+++.+.+..+.+.+ +.+|+.. ++...-..+.....
T Consensus 164 ~~~~~g~~vlI~--g~g~vg~~~~~lak~~-----G~~~v~~~~~~~~~~~~~----~~~ga~~--v~~~~~~~~~~~i~ 230 (345)
T cd08287 164 AGVRPGSTVVVV--GDGAVGLCAVLAAKRL-----GAERIIAMSRHEDRQALA----REFGATD--IVAERGEEAVARVR 230 (345)
T ss_pred cCCCCCCEEEEE--CCCHHHHHHHHHHHHc-----CCCEEEEECCCHHHHHHH----HHcCCce--EecCCcccHHHHHH
Confidence 456788887764 3566655555444311 233589999888776544 3467532 22221111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
... ....+|.|+ .|+|.+ ..+..+++.++++|++++..
T Consensus 231 -~~~---~~~~~d~il---~~~g~~-------------------------~~~~~~~~~l~~~g~~v~~g 268 (345)
T cd08287 231 -ELT---GGVGADAVL---ECVGTQ-------------------------ESMEQAIAIARPGGRVGYVG 268 (345)
T ss_pred -Hhc---CCCCCCEEE---ECCCCH-------------------------HHHHHHHHhhccCCEEEEec
Confidence 000 012478777 255532 35778899999999998754
No 464
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=38.00 E-value=1.6e+02 Score=30.96 Aligned_cols=86 Identities=14% Similarity=0.013 Sum_probs=48.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCC-HHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVD-NNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis-~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
|..+| +.-|.|+...+++..+... ...|+.+|.+ ...++.+.+.+...|. .+.+...|.+...........
T Consensus 12 ~k~~l-VTGas~gIG~~ia~~L~~~------Ga~Vv~~~~~~~~~~~~~~~~i~~~g~-~~~~~~~Dv~d~~~~~~~~~~ 83 (306)
T PRK07792 12 GKVAV-VTGAAAGLGRAEALGLARL------GATVVVNDVASALDASDVLDEIRAAGA-KAVAVAGDISQRATADELVAT 83 (306)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHC------CCEEEEecCCchhHHHHHHHHHHhcCC-eEEEEeCCCCCHHHHHHHHHH
Confidence 45666 5566678888888877532 3368888874 3455555555555443 466777787653211100000
Q ss_pred CCCCCCCCCeeecCCC
Q psy17365 257 GNKVPMKFDRVLCDVP 272 (646)
Q Consensus 257 g~~~~~~FD~IL~D~P 272 (646)
... ....|.++..+-
T Consensus 84 ~~~-~g~iD~li~nAG 98 (306)
T PRK07792 84 AVG-LGGLDIVVNNAG 98 (306)
T ss_pred HHH-hCCCCEEEECCC
Confidence 001 246898887664
No 465
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=37.37 E-value=1.9e+02 Score=30.42 Aligned_cols=99 Identities=12% Similarity=0.030 Sum_probs=55.9
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccc
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLY 252 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~ 252 (646)
+.+++|++||=.+ +|+....+++..... ...|++.+.+.++.+.+. .+|... +++..-..+.....
T Consensus 159 ~~~~~~~~vlV~g--~g~iG~~~~~~a~~~------G~~vi~~~~~~~~~~~~~----~~g~~~--~i~~~~~~~~~~~~ 224 (333)
T cd08296 159 SGAKPGDLVAVQG--IGGLGHLAVQYAAKM------GFRTVAISRGSDKADLAR----KLGAHH--YIDTSKEDVAEALQ 224 (333)
T ss_pred cCCCCCCEEEEEC--CcHHHHHHHHHHHHC------CCeEEEEeCChHHHHHHH----HcCCcE--EecCCCccHHHHHH
Confidence 3567888888775 355555444443311 226888999988877663 466532 22221111111000
Q ss_pred cCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 253 TDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 253 ~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
....+|.|+ | |+|.+ ..+..+++.|+++|++|.
T Consensus 225 -------~~~~~d~vi-~--~~g~~-------------------------~~~~~~~~~l~~~G~~v~ 257 (333)
T cd08296 225 -------ELGGAKLIL-A--TAPNA-------------------------KAISALVGGLAPRGKLLI 257 (333)
T ss_pred -------hcCCCCEEE-E--CCCch-------------------------HHHHHHHHHcccCCEEEE
Confidence 012478777 3 44432 347778899999998874
No 466
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=36.97 E-value=2.5e+02 Score=29.33 Aligned_cols=42 Identities=24% Similarity=0.112 Sum_probs=25.6
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHH
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQA 229 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~ 229 (646)
+|.=+++ |.....+|..+.. ..-.|+..|.++++++.+...+
T Consensus 6 kI~vIGa--G~mG~~iA~~la~------~G~~V~l~d~~~~~~~~~~~~i 47 (292)
T PRK07530 6 KVGVIGA--GQMGNGIAHVCAL------AGYDVLLNDVSADRLEAGLATI 47 (292)
T ss_pred EEEEECC--cHHHHHHHHHHHH------CCCeEEEEeCCHHHHHHHHHHH
Confidence 3443444 5555556655541 1237999999999887765543
No 467
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=36.82 E-value=2.8e+02 Score=27.83 Aligned_cols=90 Identities=13% Similarity=0.022 Sum_probs=53.4
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+||=.+ |.|+...++++.+... .-.|+..+.+..+++.+...+...+. ++.++..|.+....+......
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~i~~~~~-~~~~~~~Dl~d~~~i~~~~~~ 82 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEA------GARVVLSARKAEELEEAAAHLEALGI-DALWIAADVADEADIERLAEE 82 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc------CCEEEEEeCCHHHHHHHHHHHHhcCC-eEEEEEccCCCHHHHHHHHHH
Confidence 355666555 6788899999887531 23688889988887777666655443 456678887764322100000
Q ss_pred CCCCCCCCCeeecCCCCC
Q psy17365 257 GNKVPMKFDRVLCDVPCT 274 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCS 274 (646)
-......+|.|+..+..+
T Consensus 83 ~~~~~~~id~vi~~ag~~ 100 (259)
T PRK08213 83 TLERFGHVDILVNNAGAT 100 (259)
T ss_pred HHHHhCCCCEEEECCCCC
Confidence 000113579888866543
No 468
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=36.66 E-value=1.3e+02 Score=30.73 Aligned_cols=132 Identities=13% Similarity=0.074 Sum_probs=64.9
Q ss_pred CCCeEEEEcCC-CchHHHHHHHHhhhcCCCCCCCcEEEEEcCCH--HHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 177 THHKVLDMCAA-PGSKTAQIIEMIHAADSNPVPSGLVVANDVDN--NRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 177 pg~~VLDmCAa-PGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~--~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
.+..||=.+|+ .+|...++|..+... ...|+..+.+. +.++.+.+ .++. .+.++..|.+........
T Consensus 6 ~~k~~lItGa~~s~GIG~a~a~~la~~------G~~v~l~~r~~~~~~~~~~~~---~~~~-~~~~~~~Dv~~~~~i~~~ 75 (256)
T PRK07889 6 EGKRILVTGVITDSSIAFHVARVAQEQ------GAEVVLTGFGRALRLTERIAK---RLPE-PAPVLELDVTNEEHLASL 75 (256)
T ss_pred cCCEEEEeCCCCcchHHHHHHHHHHHC------CCEEEEecCccchhHHHHHHH---hcCC-CCcEEeCCCCCHHHHHHH
Confidence 35678888885 688888888877521 33677777653 33333332 3332 355666777654221100
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccc----cCcc-ccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMR----KNPD-IWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lr----k~pd-~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
...-......+|.++..+ |.+... .-.+ -+..|... ..........+.+.++..++.+|.+|..+
T Consensus 76 ~~~~~~~~g~iD~li~nA---G~~~~~~~~~~~~~~~~~~~~~~-~~vN~~~~~~l~~~~~~~m~~~g~Iv~is 145 (256)
T PRK07889 76 ADRVREHVDGLDGVVHSI---GFAPQSALGGNFLDAPWEDVATA-LHVSAYSLKSLAKALLPLMNEGGSIVGLD 145 (256)
T ss_pred HHHHHHHcCCCcEEEEcc---ccccccccCCCcccCCHHHHHHH-HHHHhHHHHHHHHHHHHhcccCceEEEEe
Confidence 000001124689888765 222100 0001 01111100 01111122345667778888889888643
No 469
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=36.35 E-value=2.5e+02 Score=29.71 Aligned_cols=52 Identities=12% Similarity=0.200 Sum_probs=32.0
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCC
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP 235 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ 235 (646)
..+++|++||= .|.|+....+++..... +...|++.|.++++...+ +.+|..
T Consensus 170 ~~~~~g~~vlI--~g~g~vG~~~~~~a~~~-----G~~~v~~~~~~~~~~~~~----~~~g~~ 221 (350)
T cd08256 170 ANIKFDDVVVL--AGAGPLGLGMIGAARLK-----NPKKLIVLDLKDERLALA----RKFGAD 221 (350)
T ss_pred cCCCCCCEEEE--ECCCHHHHHHHHHHHHc-----CCcEEEEEcCCHHHHHHH----HHcCCc
Confidence 45678888876 44466655544443311 244688999998887654 345653
No 470
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=36.34 E-value=24 Score=38.08 Aligned_cols=38 Identities=24% Similarity=0.462 Sum_probs=31.2
Q ss_pred HHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHcc
Q psy17365 302 YRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQ 342 (646)
Q Consensus 302 ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~~ 342 (646)
...|..|..+|+|||+|+.- |++..|+- +|.+++++..
T Consensus 221 ~~~L~~a~~~L~~gGrl~VI--SFHSLEDR-iVK~~f~~~~ 258 (310)
T PF01795_consen 221 ERGLEAAPDLLKPGGRLVVI--SFHSLEDR-IVKQFFRELA 258 (310)
T ss_dssp HHHHHHHHHHEEEEEEEEEE--ESSHHHHH-HHHHHHHCCS
T ss_pred HHHHHHHHHHhcCCcEEEEE--EecchhhH-HHHHHHHHhc
Confidence 36788999999999999864 78888875 7888887664
No 471
>PRK12743 oxidoreductase; Provisional
Probab=36.33 E-value=1.5e+02 Score=29.96 Aligned_cols=85 Identities=8% Similarity=-0.031 Sum_probs=47.1
Q ss_pred CeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEE-cCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVAN-DVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 179 ~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~-Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
.+||=.+ |+|+...++++.+... ...|+.+ ..+...+..+...++..+. ++.++..|.+...........-
T Consensus 3 k~vlItG-as~giG~~~a~~l~~~------G~~V~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~ 74 (256)
T PRK12743 3 QVAIVTA-SDSGIGKACALLLAQQ------GFDIGITWHSDEEGAKETAEEVRSHGV-RAEIRQLDLSDLPEGAQALDKL 74 (256)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHC------CCEEEEEeCCChHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHHH
Confidence 3565555 4677888888887521 2255555 4566667777666666653 4667778876532210000000
Q ss_pred CCCCCCCCeeecCC
Q psy17365 258 NKVPMKFDRVLCDV 271 (646)
Q Consensus 258 ~~~~~~FD~IL~D~ 271 (646)
.......|.|++.+
T Consensus 75 ~~~~~~id~li~~a 88 (256)
T PRK12743 75 IQRLGRIDVLVNNA 88 (256)
T ss_pred HHHcCCCCEEEECC
Confidence 00123579888854
No 472
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=36.17 E-value=42 Score=35.92 Aligned_cols=37 Identities=30% Similarity=0.592 Sum_probs=29.7
Q ss_pred HHHHHHHHHhhccCCeEEEEcCCCCccccHHHHHHHHHHc
Q psy17365 302 YRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVET 341 (646)
Q Consensus 302 ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE~VV~~~L~~~ 341 (646)
...|..|..+|+|||+|+.- |++..|+- .|.++++++
T Consensus 216 ~~~L~~~~~~L~~gGrl~vi--sfHSlEDr-iVK~~f~~~ 252 (296)
T PRK00050 216 ERALEAALDLLKPGGRLAVI--SFHSLEDR-IVKRFFREL 252 (296)
T ss_pred HHHHHHHHHHhcCCCEEEEE--ecCcHHHH-HHHHHHHHh
Confidence 46789999999999999864 78888875 677777665
No 473
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=36.07 E-value=1.7e+02 Score=34.88 Aligned_cols=88 Identities=14% Similarity=0.083 Sum_probs=52.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHH-HcCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAK-RLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~-rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
|.+|| +..|.|+...+++..+... ...|++.|.+..++..+...+. +.+...+..+..|.+...........
T Consensus 414 gkvvL-VTGasggIG~aiA~~La~~------Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd~~~v~~a~~~ 486 (676)
T TIGR02632 414 RRVAF-VTGGAGGIGRETARRLAAE------GAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTDEQAVKAAFAD 486 (676)
T ss_pred CCEEE-EeCCCcHHHHHHHHHHHhC------CCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCCHHHHHHHHHH
Confidence 55666 5556788888888887521 3479999999988776665544 23444566777887754221100000
Q ss_pred CCCCCCCCCeeecCCC
Q psy17365 257 GNKVPMKFDRVLCDVP 272 (646)
Q Consensus 257 g~~~~~~FD~IL~D~P 272 (646)
-......+|.|+..+-
T Consensus 487 i~~~~g~iDilV~nAG 502 (676)
T TIGR02632 487 VALAYGGVDIVVNNAG 502 (676)
T ss_pred HHHhcCCCcEEEECCC
Confidence 0011236898887664
No 474
>PRK05875 short chain dehydrogenase; Provisional
Probab=35.05 E-value=2.7e+02 Score=28.30 Aligned_cols=88 Identities=9% Similarity=-0.013 Sum_probs=51.2
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-SPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
+.+||=.+ |.|+...++++.+... .-.|++.+.+..++..+...+...+ ..++.++..|..........-..
T Consensus 7 ~k~vlItG-asg~IG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~ 79 (276)
T PRK05875 7 DRTYLVTG-GGSGIGKGVAAGLVAA------GAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDA 79 (276)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHH
Confidence 56777555 4578889998877521 2378889988877766666554433 24567777887653221100000
Q ss_pred CCCCCCCCCeeecCCC
Q psy17365 257 GNKVPMKFDRVLCDVP 272 (646)
Q Consensus 257 g~~~~~~FD~IL~D~P 272 (646)
........|.|+..+-
T Consensus 80 ~~~~~~~~d~li~~ag 95 (276)
T PRK05875 80 ATAWHGRLHGVVHCAG 95 (276)
T ss_pred HHHHcCCCCEEEECCC
Confidence 0000135798887663
No 475
>PRK05854 short chain dehydrogenase; Provisional
Probab=34.82 E-value=3.2e+02 Score=28.84 Aligned_cols=87 Identities=9% Similarity=0.022 Sum_probs=51.8
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcC-CCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLN-SPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg-~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
|..|| +.-|+||...+++..+... ...|+....+..++..+.+.+.... ..++.++..|...+.........
T Consensus 14 gk~~l-ITGas~GIG~~~a~~La~~------G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~ 86 (313)
T PRK05854 14 GKRAV-VTGASDGLGLGLARRLAAA------GAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQ 86 (313)
T ss_pred CCEEE-EeCCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHH
Confidence 45565 5556678888888877521 3478888888888777666665432 23577778888764322100000
Q ss_pred CCCCCCCCCeeecCC
Q psy17365 257 GNKVPMKFDRVLCDV 271 (646)
Q Consensus 257 g~~~~~~FD~IL~D~ 271 (646)
-.......|.++..+
T Consensus 87 ~~~~~~~iD~li~nA 101 (313)
T PRK05854 87 LRAEGRPIHLLINNA 101 (313)
T ss_pred HHHhCCCccEEEECC
Confidence 001124689888865
No 476
>PRK07074 short chain dehydrogenase; Provisional
Probab=34.70 E-value=1.3e+02 Score=30.10 Aligned_cols=82 Identities=13% Similarity=0.105 Sum_probs=45.9
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
++| +..|+|+....++..+.. ....|++.+.+..++..+...+ .-..+.++..|+............-..
T Consensus 4 ~il-ItGat~~iG~~la~~L~~------~g~~v~~~~r~~~~~~~~~~~~---~~~~~~~~~~D~~~~~~~~~~~~~~~~ 73 (257)
T PRK07074 4 TAL-VTGAAGGIGQALARRFLA------AGDRVLALDIDAAALAAFADAL---GDARFVPVACDLTDAASLAAALANAAA 73 (257)
T ss_pred EEE-EECCcchHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHHh---cCCceEEEEecCCCHHHHHHHHHHHHH
Confidence 344 344566788888887752 1247899999988876665444 223466778887654221100000000
Q ss_pred CCCCCCeeecCC
Q psy17365 260 VPMKFDRVLCDV 271 (646)
Q Consensus 260 ~~~~FD~IL~D~ 271 (646)
....+|.|+..+
T Consensus 74 ~~~~~d~vi~~a 85 (257)
T PRK07074 74 ERGPVDVLVANA 85 (257)
T ss_pred HcCCCCEEEECC
Confidence 013579888765
No 477
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=34.39 E-value=3e+02 Score=29.06 Aligned_cols=99 Identities=15% Similarity=0.227 Sum_probs=55.4
Q ss_pred CCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 176 ~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
++|+.||-.+ +|+....++++.... +...|++.+.+.++...+. .+|+. .++..+-..+..... ..
T Consensus 174 ~~~~~vlI~g--~g~vg~~~~~~a~~~-----G~~~v~~~~~~~~~~~~~~----~~g~~--~~~~~~~~~~~~~~~-~~ 239 (350)
T cd08240 174 VADEPVVIIG--AGGLGLMALALLKAL-----GPANIIVVDIDEAKLEAAK----AAGAD--VVVNGSDPDAAKRII-KA 239 (350)
T ss_pred CCCCEEEEEC--CcHHHHHHHHHHHHc-----CCCeEEEEeCCHHHHHHHH----HhCCc--EEecCCCccHHHHHH-HH
Confidence 4788888873 476666655554311 2336888899988877663 35653 222221111100000 00
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
. ...+|.|+ | |+|.+ ..+..+++.|+++|++|.
T Consensus 240 ~----~~~~d~vi-d--~~g~~-------------------------~~~~~~~~~l~~~g~~v~ 272 (350)
T cd08240 240 A----GGGVDAVI-D--FVNNS-------------------------ATASLAFDILAKGGKLVL 272 (350)
T ss_pred h----CCCCcEEE-E--CCCCH-------------------------HHHHHHHHHhhcCCeEEE
Confidence 0 11478777 3 44422 357788999999999884
No 478
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=34.31 E-value=2.8e+02 Score=28.42 Aligned_cols=103 Identities=16% Similarity=0.135 Sum_probs=56.0
Q ss_pred ccCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccc
Q psy17365 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVL 251 (646)
Q Consensus 172 ~Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~ 251 (646)
...+++|..||=. + +|+....++++.... +...|++...++++..++ +.+|+..+ .......+....
T Consensus 124 ~~~~~~~~~vlI~-g-~g~vg~~~~~la~~~-----g~~~v~~~~~~~~~~~~~----~~~g~~~~--~~~~~~~~~~~l 190 (312)
T cd08269 124 RGWIRAGKTVAVI-G-AGFIGLLFLQLAAAA-----GARRVIAIDRRPARLALA----RELGATEV--VTDDSEAIVERV 190 (312)
T ss_pred hcCCCCCCEEEEE-C-CCHHHHHHHHHHHHc-----CCcEEEEECCCHHHHHHH----HHhCCceE--ecCCCcCHHHHH
Confidence 3456788888877 3 466666655554421 222388888888776633 44666432 221111111100
Q ss_pred ccCCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE
Q psy17365 252 YTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319 (646)
Q Consensus 252 ~~~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV 319 (646)
. .. .....+|.|+- |+|.+ ..+..+++.|+++|+++
T Consensus 191 ~-~~---~~~~~vd~vld---~~g~~-------------------------~~~~~~~~~l~~~g~~~ 226 (312)
T cd08269 191 R-EL---TGGAGADVVIE---AVGHQ-------------------------WPLDLAGELVAERGRLV 226 (312)
T ss_pred H-HH---cCCCCCCEEEE---CCCCH-------------------------HHHHHHHHHhccCCEEE
Confidence 0 00 00135787763 55432 24677889999999887
No 479
>PRK08267 short chain dehydrogenase; Provisional
Probab=34.16 E-value=1.9e+02 Score=29.05 Aligned_cols=82 Identities=13% Similarity=-0.016 Sum_probs=48.1
Q ss_pred EEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC-
Q psy17365 181 VLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK- 259 (646)
Q Consensus 181 VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~- 259 (646)
||= ..|+|+....++..+... .-.|++.+.+...+..+.+.+. ..++.++..|.++.......-..-..
T Consensus 4 vlI-tGasg~iG~~la~~l~~~------G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~D~~~~~~v~~~~~~~~~~ 73 (260)
T PRK08267 4 IFI-TGAASGIGRATALLFAAE------GWRVGAYDINEAGLAALAAELG---AGNAWTGALDVTDRAAWDAALADFAAA 73 (260)
T ss_pred EEE-eCCCchHHHHHHHHHHHC------CCeEEEEeCCHHHHHHHHHHhc---CCceEEEEecCCCHHHHHHHHHHHHHH
Confidence 443 445688888888877521 2378889999887776655433 23577788888764322100000000
Q ss_pred CCCCCCeeecCCC
Q psy17365 260 VPMKFDRVLCDVP 272 (646)
Q Consensus 260 ~~~~FD~IL~D~P 272 (646)
....+|.|+..+-
T Consensus 74 ~~~~id~vi~~ag 86 (260)
T PRK08267 74 TGGRLDVLFNNAG 86 (260)
T ss_pred cCCCCCEEEECCC
Confidence 0246898887553
No 480
>PF03657 UPF0113: Uncharacterised protein family (UPF0113); InterPro: IPR005155 This entry represents PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain containing proteins such as the ribosomal biogenesis factor NIP7 [, ]. PUA domains are predicted to bind RNA molecules with complex folded structures []. NIP7 is required for efficient 60S ribosome subunit biogenesis and has been shown to interact with another essential nucleolar protein, Nop8p, and the exosome subunit Rrp43p. These three proteins are required for 60S subunit synthesis and may be part of a dynamic complex involved in this process.; PDB: 1T5Y_A 1SQW_A 2P38_A.
Probab=33.93 E-value=16 Score=35.59 Aligned_cols=72 Identities=18% Similarity=0.298 Sum_probs=49.4
Q ss_pred CCcCEEEEcChhhHHHHhhCCCCceEEeCceee--EEEecCCCCccceeeccchhHHHhhhhCCCcEEEeCHHHHHHHHh
Q psy17365 494 GKKKIIYFTSPMVKNIIQSNENNLKIINTGVKS--FARCDNKVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILN 571 (646)
Q Consensus 494 g~~~~iy~~s~~~~~i~~~~~~~lkiv~~Gvk~--F~r~~~~~~~c~~Ri~~eg~~~l~~~~~~kr~v~~~~~~~~~ll~ 571 (646)
+..+.+||+|+.+.+.+.+ +.+.++.|+-+ |.+. .-.||+.-+++.+++++. .. .|-+.+.--..+|-
T Consensus 37 ~~~~~Vyyvs~~l~~~~~~---~~~~~s~G~~~G~f~k~-----~~kf~l~i~~l~~la~~~-~~-kvwvk~~~e~~FLY 106 (162)
T PF03657_consen 37 LHKDRVYYVSEELMKLASN---RPNLYSLGTCLGKFTKK-----GKKFRLHITALDYLAPYA-KN-KVWVKPKAEMLFLY 106 (162)
T ss_dssp CCTCEEEEEEHHHHCCCTT---CHHHHCCSEEEEEE-TT-----TSEEEEEGHHHHCCCCC--SS-EEEE-HHHHHHHCT
T ss_pred eecceEEEECHHHHHHHhC---CCccceeceEEEEEecC-----CccceeeHHHHHHhhhcc-ce-eEEECCCceEEeee
Confidence 4568999999988866543 56777888654 4421 125999999999999998 66 88887766666665
Q ss_pred cCCC
Q psy17365 572 NSTP 575 (646)
Q Consensus 572 ~~~p 575 (646)
....
T Consensus 107 GndV 110 (162)
T PF03657_consen 107 GNDV 110 (162)
T ss_dssp T--E
T ss_pred cCCc
Confidence 5443
No 481
>PRK07806 short chain dehydrogenase; Provisional
Probab=33.79 E-value=3.4e+02 Score=26.87 Aligned_cols=128 Identities=13% Similarity=0.093 Sum_probs=64.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCH-HHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDN-NRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~-~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
+.+||=.+ |+|+...+++..+... ...|++.+.+. .++..+...++..+ .++.++..|.+...........
T Consensus 6 ~k~vlItG-asggiG~~l~~~l~~~------G~~V~~~~r~~~~~~~~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~ 77 (248)
T PRK07806 6 GKTALVTG-SSRGIGADTAKILAGA------GAHVVVNYRQKAPRANKVVAEIEAAG-GRASAVGADLTDEESVAALMDT 77 (248)
T ss_pred CcEEEEEC-CCCcHHHHHHHHHHHC------CCEEEEEeCCchHhHHHHHHHHHhcC-CceEEEEcCCCCHHHHHHHHHH
Confidence 45677554 5677888888877521 23577776654 45555555454443 3466777887764221100000
Q ss_pred CCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
-.......|.|+..+.-+... ..+++ . .......-...+++.+.+.++.+|++|+.+
T Consensus 78 ~~~~~~~~d~vi~~ag~~~~~--~~~~~------~-~~~vn~~~~~~l~~~~~~~~~~~~~iv~is 134 (248)
T PRK07806 78 AREEFGGLDALVLNASGGMES--GMDED------Y-AMRLNRDAQRNLARAALPLMPAGSRVVFVT 134 (248)
T ss_pred HHHhCCCCcEEEECCCCCCCC--CCCcc------e-eeEeeeHHHHHHHHHHHhhccCCceEEEEe
Confidence 000113578888765311110 11111 0 011112234567778888777778887653
No 482
>PRK14974 cell division protein FtsY; Provisional
Probab=33.75 E-value=2.9e+02 Score=30.11 Aligned_cols=55 Identities=22% Similarity=0.158 Sum_probs=30.6
Q ss_pred CeEEEEcCCCc-hHHHHHHHHhhhcCCCCCCCcEEEEEcCCH---HHHHHHHHHHHHcCCCC
Q psy17365 179 HKVLDMCAAPG-SKTAQIIEMIHAADSNPVPSGLVVANDVDN---NRCYMLVHQAKRLNSPC 236 (646)
Q Consensus 179 ~~VLDmCAaPG-gKT~~lae~l~~~~~~~~~~G~VvA~Dis~---~Rl~~L~~n~~rlg~~n 236 (646)
..|+=++.-|| |||+.++.+.+.-.. ....|.-++.|. ...+.+...+.++|++-
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~---~g~~V~li~~Dt~R~~a~eqL~~~a~~lgv~v 198 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKK---NGFSVVIAAGDTFRAGAIEQLEEHAERLGVKV 198 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH---cCCeEEEecCCcCcHHHHHHHHHHHHHcCCce
Confidence 35666666666 588876655431101 122443445553 34466777788888753
No 483
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=33.64 E-value=1.9e+02 Score=30.27 Aligned_cols=47 Identities=11% Similarity=0.023 Sum_probs=27.7
Q ss_pred CCCeEEEEcCCCchHH---HHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q psy17365 177 THHKVLDMCAAPGSKT---AQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC 236 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT---~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n 236 (646)
++..+|=.-.|+|+.. .|+|..+ ...|++.+.+..+.+.+++ +|...
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~---------G~~vi~~~~~~~~~~~~~~----~g~~~ 191 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKAD---------GIKVINIVRRKEQVDLLKK----IGAEY 191 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHc---------CCEEEEEeCCHHHHHHHHH----cCCcE
Confidence 4445553334555544 4444443 2368999999988777644 67653
No 484
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=33.59 E-value=3e+02 Score=28.71 Aligned_cols=45 Identities=11% Similarity=-0.003 Sum_probs=28.3
Q ss_pred cCCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHH
Q psy17365 173 LDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYML 225 (646)
Q Consensus 173 Ld~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L 225 (646)
..+.+|+.||-.++ |+....+++++.. -...|++.+.+..+...+
T Consensus 158 ~~~~~~~~vlI~g~--g~iG~~~~~~a~~------~G~~v~~~~~~~~~~~~~ 202 (330)
T cd08245 158 AGPRPGERVAVLGI--GGLGHLAVQYARA------MGFETVAITRSPDKRELA 202 (330)
T ss_pred hCCCCCCEEEEECC--CHHHHHHHHHHHH------CCCEEEEEeCCHHHHHHH
Confidence 35678899998843 4444444444331 123688888888887665
No 485
>PRK08589 short chain dehydrogenase; Validated
Probab=33.47 E-value=2.3e+02 Score=28.99 Aligned_cols=86 Identities=13% Similarity=0.022 Sum_probs=48.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
|.+|| +.-|.|+...+++..+.. ....|++++.+ .++..+...++..+. ++.++..|.+...........-
T Consensus 6 ~k~vl-ItGas~gIG~aia~~l~~------~G~~vi~~~r~-~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~~ 76 (272)
T PRK08589 6 NKVAV-ITGASTGIGQASAIALAQ------EGAYVLAVDIA-EAVSETVDKIKSNGG-KAKAYHVDISDEQQVKDFASEI 76 (272)
T ss_pred CCEEE-EECCCchHHHHHHHHHHH------CCCEEEEEeCc-HHHHHHHHHHHhcCC-eEEEEEeecCCHHHHHHHHHHH
Confidence 44565 445567778888887752 13478888988 666666666654442 4667777876532211000000
Q ss_pred CCCCCCCCeeecCCC
Q psy17365 258 NKVPMKFDRVLCDVP 272 (646)
Q Consensus 258 ~~~~~~FD~IL~D~P 272 (646)
.......|.++..+-
T Consensus 77 ~~~~g~id~li~~Ag 91 (272)
T PRK08589 77 KEQFGRVDVLFNNAG 91 (272)
T ss_pred HHHcCCcCEEEECCC
Confidence 001245798888764
No 486
>PRK10867 signal recognition particle protein; Provisional
Probab=33.38 E-value=1.3e+02 Score=34.11 Aligned_cols=90 Identities=18% Similarity=0.169 Sum_probs=40.4
Q ss_pred CeEEEEcCCCc-hHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHH-HHHHHHHHHHcCCCCeEE-EecCCCCCccccccCC
Q psy17365 179 HKVLDMCAAPG-SKTAQIIEMIHAADSNPVPSGLVVANDVDNNR-CYMLVHQAKRLNSPCAII-TNHDASVMPNVLYTDA 255 (646)
Q Consensus 179 ~~VLDmCAaPG-gKT~~lae~l~~~~~~~~~~G~VvA~Dis~~R-l~~L~~n~~rlg~~ni~v-~~~Da~~~p~~~~~~~ 255 (646)
..|+=++.-+| |||+-++.+...-......+-.+++.|..... .+.|...+++.|++-+.. ...|...+.....
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~~i~~~a~--- 176 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPVDIAKAAL--- 176 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHH---
Confidence 35555555555 58876555432100000013345666654432 345666667777652211 1112211110000
Q ss_pred CCCCCCCCCCeeecCCC
Q psy17365 256 DGNKVPMKFDRVLCDVP 272 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~P 272 (646)
.......||.||+|.|
T Consensus 177 -~~a~~~~~DvVIIDTa 192 (433)
T PRK10867 177 -EEAKENGYDVVIVDTA 192 (433)
T ss_pred -HHHHhcCCCEEEEeCC
Confidence 0001246999999988
No 487
>PRK06138 short chain dehydrogenase; Provisional
Probab=33.38 E-value=1.8e+02 Score=28.99 Aligned_cols=88 Identities=10% Similarity=-0.041 Sum_probs=50.3
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+||= ..|.|+...+++..+... ...|++.+.+...+..+...+. .+ .++.++..|.++...+......-
T Consensus 5 ~k~~lI-tG~sg~iG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~-~~-~~~~~~~~D~~~~~~~~~~~~~i 75 (252)
T PRK06138 5 GRVAIV-TGAGSGIGRATAKLFARE------GARVVVADRDAEAAERVAAAIA-AG-GRAFARQGDVGSAEAVEALVDFV 75 (252)
T ss_pred CcEEEE-eCCCchHHHHHHHHHHHC------CCeEEEecCCHHHHHHHHHHHh-cC-CeEEEEEcCCCCHHHHHHHHHHH
Confidence 334554 455688899999877521 2378888888877666655544 23 34677888887643221000000
Q ss_pred CCCCCCCCeeecCCCCC
Q psy17365 258 NKVPMKFDRVLCDVPCT 274 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCS 274 (646)
......+|.|+..+..+
T Consensus 76 ~~~~~~id~vi~~ag~~ 92 (252)
T PRK06138 76 AARWGRLDVLVNNAGFG 92 (252)
T ss_pred HHHcCCCCEEEECCCCC
Confidence 00113689888865433
No 488
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=33.19 E-value=2.9e+02 Score=27.63 Aligned_cols=87 Identities=14% Similarity=0.029 Sum_probs=51.9
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.|.+||=.+ |.|+....++..+... ...|+.++.+...+..+...++..+. .+.++..|.+...........
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~------G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~Dl~~~~~~~~~~~~ 81 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGA------GAHVLVNGRNAATLEAAVAALRAAGG-AAEALAFDIADEEAVAAAFAR 81 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHc------CCeEEEEeCCHHHHHHHHHHHHhcCC-ceEEEEccCCCHHHHHHHHHH
Confidence 356777655 5677788888776521 34789999998877777776666553 366777787653211100000
Q ss_pred CCCCCCCCCeeecCC
Q psy17365 257 GNKVPMKFDRVLCDV 271 (646)
Q Consensus 257 g~~~~~~FD~IL~D~ 271 (646)
-.....++|.|+..+
T Consensus 82 ~~~~~~~id~vi~~a 96 (256)
T PRK06124 82 IDAEHGRLDILVNNV 96 (256)
T ss_pred HHHhcCCCCEEEECC
Confidence 000124578888765
No 489
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=33.16 E-value=93 Score=34.11 Aligned_cols=54 Identities=15% Similarity=0.159 Sum_probs=37.0
Q ss_pred cccCCCCCCeEEEEcCCC-chHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCC
Q psy17365 171 LLLDVQTHHKVLDMCAAP-GSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPC 236 (646)
Q Consensus 171 ~~Ld~~pg~~VLDmCAaP-GgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~n 236 (646)
..+++++|+.|-=.++|- |--+.|-|.+. +.++|+|+|+++.+++++ +.+|...
T Consensus 179 nta~v~~G~tvaV~GlGgVGlaaI~gA~~a--------gA~~IiAvD~~~~Kl~~A----~~fGAT~ 233 (366)
T COG1062 179 NTAKVEPGDTVAVFGLGGVGLAAIQGAKAA--------GAGRIIAVDINPEKLELA----KKFGATH 233 (366)
T ss_pred hcccCCCCCeEEEEeccHhHHHHHHHHHHc--------CCceEEEEeCCHHHHHHH----HhcCCce
Confidence 346789999887666543 33333434332 588999999999998775 4577654
No 490
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=33.07 E-value=1.7e+02 Score=30.56 Aligned_cols=94 Identities=19% Similarity=0.148 Sum_probs=51.0
Q ss_pred CCeEEEEcC--CCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCC
Q psy17365 178 HHKVLDMCA--APGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDA 255 (646)
Q Consensus 178 g~~VLDmCA--aPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~ 255 (646)
|+.||=.+| +-|..+.++|..++ ...|++...+.++...+ +.+|...+ ++.+- .+..... ..
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~~--------G~~vi~~~~~~~~~~~l----~~~g~~~~--~~~~~-~~~~~i~-~~ 212 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQLT--------GLTVIATASRPESQEWV----LELGAHHV--IDHSK-PLKAQLE-KL 212 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHhC--------CCEEEEEcCcHHHHHHH----HHcCCCEE--EECCC-CHHHHHH-Hh
Confidence 888876654 33334444444321 23688888877776555 34676433 22111 1111000 00
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEE
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIA 319 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LV 319 (646)
....+|.|+ | |++.| ..+..+++.|+++|++|
T Consensus 213 ----~~~~vd~vl-~--~~~~~-------------------------~~~~~~~~~l~~~G~~v 244 (336)
T TIGR02817 213 ----GLEAVSYVF-S--LTHTD-------------------------QHFKEIVELLAPQGRFA 244 (336)
T ss_pred ----cCCCCCEEE-E--cCCcH-------------------------HHHHHHHHHhccCCEEE
Confidence 013588887 3 44433 34677888999999987
No 491
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=32.98 E-value=1.7e+02 Score=27.11 Aligned_cols=76 Identities=14% Similarity=0.114 Sum_probs=46.3
Q ss_pred CCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCC
Q psy17365 177 THHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDAD 256 (646)
Q Consensus 177 pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~ 256 (646)
.+.+||=+|| |+-+..++..+... +...|+-...+.+|++.|.+.+ +-.++.+...+ .+...
T Consensus 11 ~~~~vlviGa--Gg~ar~v~~~L~~~-----g~~~i~i~nRt~~ra~~l~~~~---~~~~~~~~~~~--~~~~~------ 72 (135)
T PF01488_consen 11 KGKRVLVIGA--GGAARAVAAALAAL-----GAKEITIVNRTPERAEALAEEF---GGVNIEAIPLE--DLEEA------ 72 (135)
T ss_dssp TTSEEEEESS--SHHHHHHHHHHHHT-----TSSEEEEEESSHHHHHHHHHHH---TGCSEEEEEGG--GHCHH------
T ss_pred CCCEEEEECC--HHHHHHHHHHHHHc-----CCCEEEEEECCHHHHHHHHHHc---CccccceeeHH--HHHHH------
Confidence 4778888887 66666666666532 3456777889999988887766 33344444332 12111
Q ss_pred CCCCCCCCCeeecCCCCCCCc
Q psy17365 257 GNKVPMKFDRVLCDVPCTGDG 277 (646)
Q Consensus 257 g~~~~~~FD~IL~D~PCSG~G 277 (646)
...+|.|+. |++.|
T Consensus 73 ----~~~~DivI~---aT~~~ 86 (135)
T PF01488_consen 73 ----LQEADIVIN---ATPSG 86 (135)
T ss_dssp ----HHTESEEEE----SSTT
T ss_pred ----HhhCCeEEE---ecCCC
Confidence 146898886 44444
No 492
>PRK06500 short chain dehydrogenase; Provisional
Probab=32.69 E-value=2.1e+02 Score=28.34 Aligned_cols=127 Identities=12% Similarity=0.070 Sum_probs=62.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+.+|| +..|.|+...++++.+... ...|++.+.+...+..+.. .++. ++.++..|.............-
T Consensus 6 ~k~vl-ItGasg~iG~~la~~l~~~------g~~v~~~~r~~~~~~~~~~---~~~~-~~~~~~~D~~~~~~~~~~~~~~ 74 (249)
T PRK06500 6 GKTAL-ITGGTSGIGLETARQFLAE------GARVAITGRDPASLEAARA---ELGE-SALVIRADAGDVAAQKALAQAL 74 (249)
T ss_pred CCEEE-EeCCCchHHHHHHHHHHHC------CCEEEEecCCHHHHHHHHH---HhCC-ceEEEEecCCCHHHHHHHHHHH
Confidence 44455 4556788888888887532 2378888888766554433 3343 3556666765432110000000
Q ss_pred CCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhh----HHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 258 NKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNL----HGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 258 ~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l----~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
......+|.|+..+.-+..+. ...|+.+..... ..--..+++.+...++.+|.+|+.+
T Consensus 75 ~~~~~~id~vi~~ag~~~~~~-------~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~~~~i~~~ 136 (249)
T PRK06500 75 AEAFGRLDAVFINAGVAKFAP-------LEDWDEAMFDRSFNTNVKGPYFLIQALLPLLANPASIVLNG 136 (249)
T ss_pred HHHhCCCCEEEECCCCCCCCC-------hhhCCHHHHHHHHHHHhHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 001235898887664322221 112232222111 1122345666666666666666553
No 493
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=32.65 E-value=3.1e+02 Score=29.10 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=46.4
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
|.+||=. .|+|+...+++..+.... +...|++.+.+......+.+. +...++.++.+|.+....+..
T Consensus 4 ~k~vLVT-GatG~IG~~l~~~L~~~g----~~~~V~~~~r~~~~~~~~~~~---~~~~~~~~v~~Dl~d~~~l~~----- 70 (324)
T TIGR03589 4 NKSILIT-GGTGSFGKAFISRLLENY----NPKKIIIYSRDELKQWEMQQK---FPAPCLRFFIGDVRDKERLTR----- 70 (324)
T ss_pred CCEEEEe-CCCCHHHHHHHHHHHHhC----CCcEEEEEcCChhHHHHHHHH---hCCCcEEEEEccCCCHHHHHH-----
Confidence 5567754 457999999998875320 123688888776544333222 222467788888876432211
Q ss_pred CCCCCCCCeeecCC
Q psy17365 258 NKVPMKFDRVLCDV 271 (646)
Q Consensus 258 ~~~~~~FD~IL~D~ 271 (646)
....+|.|+.-+
T Consensus 71 --~~~~iD~Vih~A 82 (324)
T TIGR03589 71 --ALRGVDYVVHAA 82 (324)
T ss_pred --HHhcCCEEEECc
Confidence 012478888754
No 494
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=32.22 E-value=2.4e+02 Score=29.33 Aligned_cols=101 Identities=22% Similarity=0.316 Sum_probs=55.0
Q ss_pred CCCCCCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCcccccc
Q psy17365 174 DVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYT 253 (646)
Q Consensus 174 d~~pg~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~ 253 (646)
.+.+|+.||=.+ |+|+....+++.... ....|++.+.+..+.+.+.+. +|... ++..+...+.....
T Consensus 142 ~~~~~~~vlI~g-~~g~ig~~~~~~a~~------~G~~vi~~~~~~~~~~~~~~~---~g~~~--~~~~~~~~~~~~v~- 208 (329)
T cd05288 142 KPKPGETVVVSA-AAGAVGSVVGQIAKL------LGARVVGIAGSDEKCRWLVEE---LGFDA--AINYKTPDLAEALK- 208 (329)
T ss_pred CCCCCCEEEEec-CcchHHHHHHHHHHH------cCCEEEEEeCCHHHHHHHHhh---cCCce--EEecCChhHHHHHH-
Confidence 456788888544 345555555444432 123788899888887766432 56532 22221111111000
Q ss_pred CCCCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEE
Q psy17365 254 DADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 254 ~~~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVY 320 (646)
.. . ...+|.|+ | |+|. ..+..+++.|+++|++|.
T Consensus 209 ~~---~-~~~~d~vi-~--~~g~--------------------------~~~~~~~~~l~~~G~~v~ 242 (329)
T cd05288 209 EA---A-PDGIDVYF-D--NVGG--------------------------EILDAALTLLNKGGRIAL 242 (329)
T ss_pred Hh---c-cCCceEEE-E--cchH--------------------------HHHHHHHHhcCCCceEEE
Confidence 00 0 13588776 3 4442 247778899999999873
No 495
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=32.10 E-value=29 Score=36.11 Aligned_cols=74 Identities=18% Similarity=0.187 Sum_probs=36.5
Q ss_pred EcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCC
Q psy17365 184 MCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMK 263 (646)
Q Consensus 184 mCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~ 263 (646)
+..-|||=.+ ++.++. ..-+++++|+++.-.+.|++|+.+ -+.+.|.+.|+..-..... ....+
T Consensus 62 l~~YPGSP~i-a~~llR-------~qDrl~l~ELHp~d~~~L~~~~~~--~~~v~v~~~DG~~~l~all------PP~~r 125 (245)
T PF04378_consen 62 LRFYPGSPAI-AARLLR-------EQDRLVLFELHPQDFEALKKNFRR--DRRVRVHHRDGYEGLKALL------PPPER 125 (245)
T ss_dssp --EEE-HHHH-HHHHS--------TTSEEEEE--SHHHHHHHTTS--T--TS-EEEE-S-HHHHHHHH-------S-TTS
T ss_pred cCcCCCCHHH-HHHhCC-------ccceEEEEecCchHHHHHHHHhcc--CCccEEEeCchhhhhhhhC------CCCCC
Confidence 4567887433 233343 456899999999999999988775 3578899999754211111 01123
Q ss_pred CCeeecCCCC
Q psy17365 264 FDRVLCDVPC 273 (646)
Q Consensus 264 FD~IL~D~PC 273 (646)
=-.||+|||.
T Consensus 126 RglVLIDPpY 135 (245)
T PF04378_consen 126 RGLVLIDPPY 135 (245)
T ss_dssp -EEEEE----
T ss_pred CeEEEECCCC
Confidence 4589999994
No 496
>PRK05884 short chain dehydrogenase; Provisional
Probab=31.49 E-value=2.2e+02 Score=28.26 Aligned_cols=122 Identities=12% Similarity=0.042 Sum_probs=59.2
Q ss_pred cCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCCCCCCC
Q psy17365 185 CAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKF 264 (646)
Q Consensus 185 CAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~~~~~F 264 (646)
..|+|+...++++.+.. ....|+..+.+..++..+.+.+ + +.++..|......+... .. .....+
T Consensus 6 tGas~giG~~ia~~l~~------~g~~v~~~~r~~~~~~~~~~~~---~---~~~~~~D~~~~~~v~~~-~~--~~~~~i 70 (223)
T PRK05884 6 TGGDTDLGRTIAEGFRN------DGHKVTLVGARRDDLEVAAKEL---D---VDAIVCDNTDPASLEEA-RG--LFPHHL 70 (223)
T ss_pred EeCCchHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHhc---c---CcEEecCCCCHHHHHHH-HH--HHhhcC
Confidence 34567788888887752 1347888899888776554432 2 34556676543211100 00 001257
Q ss_pred CeeecCCC-CCCCcccc--cCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEc
Q psy17365 265 DRVLCDVP-CTGDGTMR--KNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYST 322 (646)
Q Consensus 265 D~IL~D~P-CSG~G~lr--k~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYST 322 (646)
|.++..+. +...+... ...+....|... ......-...+++..+..++.+|++|..+
T Consensus 71 d~lv~~ag~~~~~~~~~~~~~~~~~~~~~~~-~~~N~~~~~~~~~~~~~~~~~~g~Iv~is 130 (223)
T PRK05884 71 DTIVNVPAPSWDAGDPRTYSLADTANAWRNA-LDATVLSAVLTVQSVGDHLRSGGSIISVV 130 (223)
T ss_pred cEEEECCCccccCCCCcccchhcCHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCeEEEEe
Confidence 88887653 11111100 000011122111 11111222356667777777889888654
No 497
>KOG2940|consensus
Probab=31.48 E-value=72 Score=33.18 Aligned_cols=106 Identities=11% Similarity=0.070 Sum_probs=63.7
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEE--EecCCCCCccccccCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAII--TNHDASVMPNVLYTDA 255 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v--~~~Da~~~p~~~~~~~ 255 (646)
...++|++|+-|..+-||... +-+.++-.|.|...++..+. ..-+.|.+ ..+|-..++ +
T Consensus 73 fp~a~diGcs~G~v~rhl~~e---------~vekli~~DtS~~M~~s~~~----~qdp~i~~~~~v~DEE~Ld-f----- 133 (325)
T KOG2940|consen 73 FPTAFDIGCSLGAVKRHLRGE---------GVEKLIMMDTSYDMIKSCRD----AQDPSIETSYFVGDEEFLD-F----- 133 (325)
T ss_pred CcceeecccchhhhhHHHHhc---------chhheeeeecchHHHHHhhc----cCCCceEEEEEecchhccc-c-----
Confidence 457999999999998887643 46789999999887654432 22233332 344544333 1
Q ss_pred CCCCCCCCCCeeecCCCCCCCcccccCccccccCCcchhhhhHHHHHHHHHHHHHhhccCCeEEEEcCCCCccccH
Q psy17365 256 DGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDE 331 (646)
Q Consensus 256 ~g~~~~~~FD~IL~D~PCSG~G~lrk~pd~~~~w~~~~~~~l~~lQ~~IL~~A~~lLKpGG~LVYSTCSl~p~ENE 331 (646)
....||.|+. +.+. .|... |. .-..++-..|||.|.++ -|+.-.+.-
T Consensus 134 ----~ens~DLiis-----Slsl---------HW~Nd----LP----g~m~~ck~~lKPDg~Fi---asmlggdTL 180 (325)
T KOG2940|consen 134 ----KENSVDLIIS-----SLSL---------HWTND----LP----GSMIQCKLALKPDGLFI---ASMLGGDTL 180 (325)
T ss_pred ----cccchhhhhh-----hhhh---------hhhcc----Cc----hHHHHHHHhcCCCccch---hHHhccccH
Confidence 2367999985 2221 33211 11 12445566799999887 455555553
No 498
>PRK06182 short chain dehydrogenase; Validated
Probab=31.42 E-value=1.5e+02 Score=30.33 Aligned_cols=81 Identities=9% Similarity=-0.062 Sum_probs=45.9
Q ss_pred CCeEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCC
Q psy17365 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADG 257 (646)
Q Consensus 178 g~~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g 257 (646)
+..|| +.-|.|+...+++..+... .-.|++++.+.+++..+.. .++.++..|.+...........-
T Consensus 3 ~k~vl-ItGasggiG~~la~~l~~~------G~~V~~~~r~~~~l~~~~~-------~~~~~~~~Dv~~~~~~~~~~~~~ 68 (273)
T PRK06182 3 KKVAL-VTGASSGIGKATARRLAAQ------GYTVYGAARRVDKMEDLAS-------LGVHPLSLDVTDEASIKAAVDTI 68 (273)
T ss_pred CCEEE-EECCCChHHHHHHHHHHHC------CCEEEEEeCCHHHHHHHHh-------CCCeEEEeeCCCHHHHHHHHHHH
Confidence 34555 5556788899999887521 2378999998887654432 23566777876532211000000
Q ss_pred CCCCCCCCeeecCCC
Q psy17365 258 NKVPMKFDRVLCDVP 272 (646)
Q Consensus 258 ~~~~~~FD~IL~D~P 272 (646)
.......|.|+..+.
T Consensus 69 ~~~~~~id~li~~ag 83 (273)
T PRK06182 69 IAEEGRIDVLVNNAG 83 (273)
T ss_pred HHhcCCCCEEEECCC
Confidence 001236898887653
No 499
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=31.30 E-value=2.4e+02 Score=29.64 Aligned_cols=17 Identities=18% Similarity=0.346 Sum_probs=13.8
Q ss_pred HHHHHHHhhccCCeEEE
Q psy17365 304 IVKRGVEMLAVGGKIAY 320 (646)
Q Consensus 304 IL~~A~~lLKpGG~LVY 320 (646)
.+..+++.|+++|++|.
T Consensus 255 ~~~~~~~~l~~~G~~v~ 271 (350)
T cd08274 255 LFPDLLRLLRPGGRYVT 271 (350)
T ss_pred HHHHHHHHhccCCEEEE
Confidence 36678899999999873
No 500
>PRK09291 short chain dehydrogenase; Provisional
Probab=31.14 E-value=3.8e+02 Score=26.64 Aligned_cols=78 Identities=13% Similarity=0.018 Sum_probs=49.6
Q ss_pred eEEEEcCCCchHHHHHHHHhhhcCCCCCCCcEEEEEcCCHHHHHHHHHHHHHcCCCCeEEEecCCCCCccccccCCCCCC
Q psy17365 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNK 259 (646)
Q Consensus 180 ~VLDmCAaPGgKT~~lae~l~~~~~~~~~~G~VvA~Dis~~Rl~~L~~n~~rlg~~ni~v~~~Da~~~p~~~~~~~~g~~ 259 (646)
+||= .-|+|+...+++..+.. ....|++.+.+...+..+....+..+. .+.++..|......... .
T Consensus 4 ~vlV-tGasg~iG~~ia~~l~~------~G~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~D~~~~~~~~~------~ 69 (257)
T PRK09291 4 TILI-TGAGSGFGREVALRLAR------KGHNVIAGVQIAPQVTALRAEAARRGL-ALRVEKLDLTDAIDRAQ------A 69 (257)
T ss_pred EEEE-eCCCCHHHHHHHHHHHH------CCCEEEEEeCCHHHHHHHHHHHHhcCC-cceEEEeeCCCHHHHHH------H
Confidence 4553 45578888888887752 134788988888877777666665554 46777788765432211 0
Q ss_pred CCCCCCeeecCC
Q psy17365 260 VPMKFDRVLCDV 271 (646)
Q Consensus 260 ~~~~FD~IL~D~ 271 (646)
.....|.|+..+
T Consensus 70 ~~~~id~vi~~a 81 (257)
T PRK09291 70 AEWDVDVLLNNA 81 (257)
T ss_pred hcCCCCEEEECC
Confidence 012689888865
Done!