RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17365
(646 letters)
>2frx_A Hypothetical protein YEBU; rossmann-type
S-adenosylmethionine-dependent methyltransfera domain;
2.90A {Escherichia coli}
Length = 479
Score = 213 bits (543), Expect = 4e-62
Identities = 77/328 (23%), Positives = 123/328 (37%), Gaps = 51/328 (15%)
Query: 45 KDFEQYYKAQKICPENEWDSMLETLKKDLPTAFRITN---CSPEEAKALLSIVESKFFKE 101
F + + +D L ++ L + R N S + L
Sbjct: 10 DAFLTQMREA-MPSTLSFDDFLAACQRPLRRSIR-VNTLKISVADFLQLT---------- 57
Query: 102 LVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISR 161
+PW E G+ ++ R + + L +G
Sbjct: 58 --------APYGWTLTPIPWCEE--GFWIE---RDNEDALPLGSTAEHL-----SGLFYI 99
Query: 162 QEAVSMIPP--LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDN 219
QEA SM+P L D +V+D+ AAPGSKT QI ++ G ++AN+
Sbjct: 100 QEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNN-------EGAILANEFSA 152
Query: 220 NRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTM 279
+R +L R +T+ D V + P FD +L D PC+G+G +
Sbjct: 153 SRVKVLHANISRCGISNVALTHFDGRVFGAAV---------PEMFDAILLDAPCSGEGVV 203
Query: 280 RKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIV 339
RK+PD W+P + + Q ++ L GG + YSTC+LN E+EAV L
Sbjct: 204 RKDPDALKNWSPESNQEIAATQRELIDSAFHALRPGGTLVYSTCTLNQEENEAVCLWLKE 263
Query: 340 ETQGAVQLVDVSAITPALKYAPGLSQWR 367
AV+ + + + P A +
Sbjct: 264 TYPDAVEFLPLGDLFPGANKALTEEGFL 291
>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii}
SCOP: c.66.1.38
Length = 315
Score = 202 bits (517), Expect = 3e-60
Identities = 88/332 (26%), Positives = 139/332 (41%), Gaps = 63/332 (18%)
Query: 44 NKDFEQYYKAQKICPENEWDSMLETLKKDLPTAFRITN---CSPEEAKALLSIVESKFFK 100
+K F Y ++ E + E ++K LP FR N S ++ L
Sbjct: 17 SKLFADRYF--QLWGE-RAIRIAEAMEKPLPRCFR-VNTLKISVQDLVKRL--------- 63
Query: 101 ELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHIS 160
++ +PW E G+ L +I ++ F G I
Sbjct: 64 ---------NKKGFQFKRVPWAKE--GFCLTREPFSITSTPEFLT-----------GLIY 101
Query: 161 RQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNN 220
QEA SM PP+ LD + V DM AAPG KT+ + +++ G++ A DVD N
Sbjct: 102 IQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMR-------NDGVIYAFDVDEN 154
Query: 221 RCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMR 280
R RL I+ + + + ++ ++FD++L D PCTG GT+
Sbjct: 155 RLRETRLNLSRLGVLNVILFHSSSLHIG----------ELNVEFDKILLDAPCTGSGTIH 204
Query: 281 KNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVE 340
KNP+ T + G+Q R++++G+E+L GG + YSTCSL P E+E VIQ +
Sbjct: 205 KNPERKWNRTMDDIKFCQGLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDN 264
Query: 341 TQGAVQLVDVSAITPALKYAPGLSQWRPASKD 372
V+L+ + P L+
Sbjct: 265 FD--VELLPLK------YGEPALTNPFGIELS 288
>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif,
transferase; 2.28A {Enterococcus faecium}
Length = 456
Score = 207 bits (528), Expect = 3e-60
Identities = 74/330 (22%), Positives = 128/330 (38%), Gaps = 64/330 (19%)
Query: 44 NKDFEQYYKAQKICPENEWDSMLETLKKDLPTAFRITN---CSPEEAKALLSIVESKFFK 100
+ F + Y+ + E D + + FR N + +
Sbjct: 9 PQQFIKKYR--LLLGEEASDFFSALEQGSVKKGFR-WNPLKPAGLDMVQTY--------- 56
Query: 101 ELVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHIS 160
E++ P P+ E G+ ++ S LHQ G+
Sbjct: 57 ---------HSEELQPA--PYSNE--GFLGTVN--------GKSFLHQ-------AGYEY 88
Query: 161 RQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNN 220
QE +MI + KVLD+CAAPG K+ Q+ + GL+V N++
Sbjct: 89 SQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKG-------KGLLVTNEIFPK 141
Query: 221 RCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMR 280
R +L +R AI+TNH + + FDR++ D PC+G+G R
Sbjct: 142 RAKILSENIERWGVSNAIVTNHAPAELVPHF---------SGFFDRIVVDAPCSGEGMFR 192
Query: 281 KNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVE 340
K+P+ +WT + Q I+ ++ML G++ YSTC+ P E+E +I L+
Sbjct: 193 KDPNAIKEWTEESPLYCQKRQQEILSSAIKMLKNKGQLIYSTCTFAPEENEEIISWLVEN 252
Query: 341 TQGAVQLVDVSAITPALKYAPGLSQWRPAS 370
++ + ++ + G S+W +
Sbjct: 253 YPVTIEEIPLT-----QSVSSGRSEWGSVA 277
>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF,
adoMet, MULT specific, methyltransferase, transferase;
HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A*
3m6u_A* 3m6x_A*
Length = 464
Score = 199 bits (508), Expect = 3e-57
Identities = 72/331 (21%), Positives = 117/331 (35%), Gaps = 62/331 (18%)
Query: 45 KDFEQYYKAQKICPENEWDSMLETLKKDLPTAFRITN---CSPEEAKALLSIVESKFFKE 101
K F ++ E + + R N PE + +
Sbjct: 4 KAFLSRM--AELLGEEFPAFLKALTEGKRTYGLR-VNTLKLPPEAFQRI----------- 49
Query: 102 LVNDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISR 161
+ PI PW E G+ F G
Sbjct: 50 --------SPWPLRPI--PWCQE--GFY-------YPEEARPGPHPFFY-----AGLYYI 85
Query: 162 QEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNR 221
QE + +LLD + +VLD+ AAPG KT + + GL++AN+VD R
Sbjct: 86 QEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGG-------KGLLLANEVDGKR 138
Query: 222 CYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRK 281
L+ +R +P +T + F RVL D PC+G+G RK
Sbjct: 139 VRGLLENVERWGAPL-AVTQAPPRALAEAF---------GTYFHRVLLDAPCSGEGMFRK 188
Query: 282 NPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVET 341
+ + W PS + +Q ++ + +L GG + YSTC+ P E+E V+ + +
Sbjct: 189 DREAARHWGPSAPKRMAEVQKALLAQASRLLGPGGVLVYSTCTFAPEENEGVVAHFL-KA 247
Query: 342 QGAVQLVDVSAITPALKYAPGLSQWRPASKD 372
+L D +APG+ +W + +
Sbjct: 248 HPEFRLEDARLHPL---FAPGVPEWGEGNPE 275
>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold,
structural genomics, riken structu genomics/proteomics
initiative; 1.27A {Methanocaldococcus jannaschii} PDB:
3a4t_A
Length = 274
Score = 193 bits (493), Expect = 4e-57
Identities = 66/290 (22%), Positives = 120/290 (41%), Gaps = 54/290 (18%)
Query: 65 MLETLKKDLPTAFRITN---CSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPW 121
M+ K + R+ N +PE K L E K + +
Sbjct: 1 MMIVYKGEKMQFIRV-NTLKINPEVLKKRL-------------------ENKGVVLEKTF 40
Query: 122 YPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKV 181
++++ S +I ++ + G+ Q SMIPP++L+ + +
Sbjct: 41 LDY--AFEVKKSPFSIGSTPEYLF-----------GYYMPQSISSMIPPIVLNPREDDFI 87
Query: 182 LDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITN 241
LDMCAAPG KT + +++ G +VA ++ R L R+ II N
Sbjct: 88 LDMCAAPGGKTTHLAQLMK-------NKGTIVAVEISKTRTKALKSNINRMGVLNTIIIN 140
Query: 242 HDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQ 301
D + L K + FD++L D PC+G+ KN + + + Q
Sbjct: 141 ADMRKYKDYLL------KNEIFFDKILLDAPCSGNIIKDKNRN----VSEEDIKYCSLRQ 190
Query: 302 YRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVS 351
++ G+++L G++ YSTCS+ E+E VI+ ++ + + V+L+ +
Sbjct: 191 KELIDIGIDLLKKDGELVYSTCSMEVEENEEVIKYIL-QKRNDVELIIIK 239
>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase,
structural genomics, structural genomics consortium,
SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38
Length = 309
Score = 172 bits (438), Expect = 5e-49
Identities = 61/320 (19%), Positives = 104/320 (32%), Gaps = 41/320 (12%)
Query: 67 ETLKKDLPTAFRITN---CSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYP 123
LP R+ N ++ ++ + Q + +
Sbjct: 4 PGPASQLPRFVRV-NTLKTCSDDVVDYFK-------RQGFSYQGRASSLDDLRALKGKHF 55
Query: 124 EQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLD 183
+L + + GH+ Q+ S +P +LLD V+D
Sbjct: 56 LLDPLMPELLV--FPAQTDLHEHPLYR-----AGHLILQDRASCLPAMLLDPPPGSHVID 108
Query: 184 MCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHD 243
CAAPG+KT+ + ++ G + A D+D R + R C + D
Sbjct: 109 ACAAPGNKTSHLAALLK-------NQGKIFAFDLDAKRLASMATLLARAGVSCCELAEED 161
Query: 244 ASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNG--NNLHGIQ 301
+ + + +L D C+G G + + TPS + L G Q
Sbjct: 162 FL-------AVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQ 214
Query: 302 YRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPA--LKY 359
R + + ++ YSTCSL E+E V++ + + GA +L P L
Sbjct: 215 QRALCHAL-TFPSLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLST 273
Query: 360 APGLSQWR---PASKDNLDG 376
PG P G
Sbjct: 274 FPGAEHCLRASPE-TTLSSG 292
>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog,
methyltransferase, structural genomics, NPPSFA; HET:
SFG; 2.55A {Pyrococcus horikoshii}
Length = 450
Score = 167 bits (425), Expect = 1e-45
Identities = 71/323 (21%), Positives = 119/323 (36%), Gaps = 56/323 (17%)
Query: 58 PENEWDSMLETLKKDLPTAFRI--TNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVA 115
+ D K+ + R+ + EE L EE+ V
Sbjct: 170 GDETEDFFRSVNKRHEWISIRVNTLKANVEEVIGEL------------------EEDGVE 211
Query: 116 PICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDV 175
+ P +++ TS AF++ G I QE S + ++LD
Sbjct: 212 VVRSERVPT--ILKIK-GPYNFDTSSAFNE-----------GKIIVQEEASAVASIVLDP 257
Query: 176 QTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSP 235
+ V+D+ AAPG KT + E++ G + A DVD R L KR+
Sbjct: 258 KPGETVVDLAAAPGGKTTHLAELMK-------NKGKIYAFDVDKMRMKRLKDFVKRMGIK 310
Query: 236 CAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKW--TPSN 293
DA A D+VL D PCT GT+ KNP++ +W
Sbjct: 311 IVKPLVKDA--------RKAPEIIGEEVADKVLLDAPCTSSGTIGKNPEL--RWRLREDK 360
Query: 294 GNNLHGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAI 353
N + +Q +++ ++ GG++ Y+TCS+ E+E I+ + +LV + +
Sbjct: 361 INEMSQLQRELLESAARLVKPGGRLLYTTCSIFKEENEKNIRWFLNVHPEF-KLVPLKSP 419
Query: 354 TPALKYAPGLSQWRPASKDNLDG 376
+ W P + + G
Sbjct: 420 YDPGFLEGTMRAW-P-HRHSTIG 440
>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet,
methyltransferase-fold, RNA-binding domain; 1.65A
{Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A
Length = 429
Score = 163 bits (414), Expect = 2e-44
Identities = 77/319 (24%), Positives = 120/319 (37%), Gaps = 61/319 (19%)
Query: 61 EWDSMLETLKKDLPTAFRI--TNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPIC 118
+W S++E + P RI T+ S + ALL +E +
Sbjct: 160 QWQSIVEANNQRPPMWLRINRTHHSRDSWLALL------------------DEAGMKGFP 201
Query: 119 LPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTH 178
YP+ +L+ + + F G ++ Q+A + L Q
Sbjct: 202 HADYPD--AVRLE-TPAPVHALPGFED-----------GWVTVQDASAQGCMTWLAPQNG 247
Query: 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAI 238
+LD+CAAPG KT I+E+ P VVA D+D R + KRL A
Sbjct: 248 EHILDLCAAPGGKTTHILEV--------APEAQVVAVDIDEQRLSRVYDNLKRLGMK-AT 298
Query: 239 ITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDI-WTKWTPSNGNNL 297
+ D +FDR+L D PC+ G +R++PDI W + + L
Sbjct: 299 VKQGDG--------RYPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLR-RDRDIPEL 349
Query: 298 HGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPAL 357
+Q I+ L GG + Y+TCS+ P E+ I+ + T A + P
Sbjct: 350 AQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGK 409
Query: 358 KYAPGLSQWRPASKDNLDG 376
+ PG + DG
Sbjct: 410 QNLPG--------AEEGDG 420
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 54.9 bits (131), Expect = 7e-08
Identities = 84/619 (13%), Positives = 172/619 (27%), Gaps = 204/619 (32%)
Query: 46 DFE---QYYKAQKICPENEWDSMLETLKKDLPTAFRITNCS--PEEAKALLSIVESKFFK 100
DFE Y+ + I E + + +C + K++LS +
Sbjct: 8 DFETGEHQYQYKDILSVFE-----DAFVDNF-------DCKDVQDMPKSILS---KEEID 52
Query: 101 ELVNDQETSEEEKVAPICLPWYPEQM-------------GWQL-QLSRRAIRTS---QAF 143
++ ++ L E+M + + + + S + +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMY 112
Query: 144 SKLHQFLIMEN---ATGHISRQEAVSMIPPLLLDVQTH-----H------K---VLDMCA 186
+ L +N A ++SR + + LL+++ K LD+C
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172
Query: 187 APG-----------------SKTAQIIEMI----HAADSN-------------------- 205
+ + ++EM+ + D N
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 206 ---------PVPSGLVVANDV-D-------NNRCYMLV--HQAKRLNSPCAIITNHDASV 246
P + L+V +V + N C +L+ + + A T H +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 247 MPNVLYTDADG-----NKVPMKFDRVLCDVP---CTGD-------GTM-RKNPDIWTKWT 290
++ T + + + D+P T + R W W
Sbjct: 293 HHSMTLTPDEVKSLLLKYLDCRPQ----DLPREVLTTNPRRLSIIAESIRDGLATWDNWK 348
Query: 291 PSNGNNLHGIQYRIVKRGVEMLAVGG-KIAYSTCSLNPLED----EAVIQRL------IV 339
N + L I++ + +L + + S+ P ++ +
Sbjct: 349 HVNCDKLT----TIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWFDVIKSD 403
Query: 340 ETQGAVQLVDVSAIT----PALKYAPGLSQWRPASKDN--------LDGYGSFDEVPDKW 387
+L S + + P + +N +D Y +P +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHY----NIPKTF 459
Query: 388 KTQVRPQMFPTGDP------SHHLERCSV---FGLLPH--------QQGPRADNGEAESK 430
+ P D HHL+ L +Q R D A +
Sbjct: 460 DSDDLIP--PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHD-STAWNA 516
Query: 431 PEPEASSPTREPPSKKRKRQPQGYKEDPFVFFN--TDEAVWPPIRDF-YEISPSL---PV 484
++ Q + YK P++ N E + I DF +I +L
Sbjct: 517 SGSILNTLQ----------QLKFYK--PYICDNDPKYERLVNAILDFLPKIEENLICSKY 564
Query: 485 DCLLTRCLVGKKKIIYFTS 503
LL L+ + + I+ +
Sbjct: 565 TDLLRIALMAEDEAIFEEA 583
Score = 40.6 bits (94), Expect = 0.002
Identities = 30/188 (15%), Positives = 55/188 (29%), Gaps = 49/188 (26%)
Query: 450 QPQGYKEDPFVF---FNTDEAVWPPIRDFYEISPSLPVDCLLTRCLVGKKKIIYFTSPMV 506
YK+ VF F + D ++ K I + +
Sbjct: 14 HQYQYKDILSVFEDAFVDN-------FDCKDVQDMP-------------KSI--LSKEEI 51
Query: 507 KNIIQS--NENNLKIINTGVKSFARCDNKVMGCAFRFCQEGLSSMKAFIGEKRKVRVNRE 564
+II S + + F +K +F +E L F+ K +
Sbjct: 52 DHIIMSKDAVSGTLRL------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQP 105
Query: 565 ELITILNNSTPE------QP-TDLELLRPETRQTLTREGFGVGSCLLELQDDLPLSLVGW 617
++T + + Q + R + L + LLEL+ + + G
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ-------ALLELRPAKNVLIDGV 158
Query: 618 R--GKSSV 623
GK+ V
Sbjct: 159 LGSGKTWV 166
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 46.2 bits (109), Expect = 4e-05
Identities = 57/334 (17%), Positives = 86/334 (25%), Gaps = 159/334 (47%)
Query: 452 QGYKEDPFVFFNTDEAVWPPIRDFYEISPSLPVDCL---------LTRCLVGKKKII--- 499
QG +D F +E +RD Y+ L D + L R + +K+
Sbjct: 163 QGNTDDYF-----EE-----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQG 212
Query: 500 -----------------YFTS-----PMVKNIIQ------------SNENNLKIINTGV- 524
Y S P++ +IQ L+ G
Sbjct: 213 LNILEWLENPSNTPDKDYLLSIPISCPLI-GVIQLAHYVVTAKLLGFTPGELRSYLKGAT 271
Query: 525 ------------------KSFARCDNKVMGCAF----RFCQ------------------- 543
+SF K + F R C
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVR-CYEAYPNTSLPPSILEDSLEN 330
Query: 544 -EGL-SSMKAFIGEKRKV------RVNR----EELITI-LNNSTPEQ------PTDLELL 584
EG+ S M + ++ + N + + I L N + P L L
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNG-AKNLVVSGPPQSLYGL 389
Query: 585 RPETR---------QTLTREGFG------------VG----SCLLE-----LQDDLPLSL 614
R Q +R F V S LL + DL +
Sbjct: 390 NLTLRKAKAPSGLDQ--SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 615 VGWRGKS---SVRAYISGSDLVHYLRLLGADVSK 645
V + K V GSD LR+L +S+
Sbjct: 448 VSFNAKDIQIPVYDTFDGSD----LRVLSGSISE 477
Score = 45.8 bits (108), Expect = 4e-05
Identities = 55/318 (17%), Positives = 96/318 (30%), Gaps = 97/318 (30%)
Query: 53 AQKICPENEWDSMLETLKKDLPTAFRI-TNCSPEEAKALLSIVESKFFKELVNDQETSEE 111
A I + W+S +++K + F I C EA S+ S ++ D + E
Sbjct: 280 AVAIAETDSWESFFVSVRKAITVLFFIGVRCY--EAYPNTSLPPS-----ILEDSLENNE 332
Query: 112 EKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMI--- 168
+P M LS + Q +++ N+ +Q +S++
Sbjct: 333 GVPSP---------M-----LSISNLTQEQVQDYVNKT----NSHLPAGKQVEISLVNGA 374
Query: 169 -------PPL-LLDVQTH-HKV-----LDMCAAPGSKTAQIIEM----IHAADSNP---- 206
PP L + K LD P S+ + + P
Sbjct: 375 KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVAS----PFHSH 430
Query: 207 --VPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKF 264
VP+ ++ D+ N + AK + P + D S + G+
Sbjct: 431 LLVPASDLINKDLVKNN---VSFNAKDIQIP--VYDTFDGSDL-----RVLSGSISER-- 478
Query: 265 DRVLCDVPCTGDGTMRKNPDIWTKWT-----------PSNGNNLHGIQYRIVK-RGVEML 312
+ D P W T P + L + +R GV ++
Sbjct: 479 ---IVDCIIR-------LPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVI 528
Query: 313 AVGGKIAYSTCSLNPLED 330
G T +NP +D
Sbjct: 529 VAG------TLDINPDDD 540
Score = 36.6 bits (84), Expect = 0.029
Identities = 33/185 (17%), Positives = 58/185 (31%), Gaps = 53/185 (28%)
Query: 473 RDFYEISPSLPVDCLLTRCLVGKKKIIYFTSPMVKNIIQSNENNLKIINTGVKSFARCDN 532
D Y+ S + + R K F+ + +I+ +N NL I G K +N
Sbjct: 1633 MDLYKTSKA--AQDVWNRADNHFKDTYGFS---ILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 533 KVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELITILNNSTPEQPTDLELLRPETRQT- 591
F +G + E +N E T + + LL T+ T
Sbjct: 1688 -YSAMIFETIVDGKLKTEKIFKE-----IN--EHSTSYTFRSEK-----GLLS-ATQFTQ 1733
Query: 592 -------------LTREGF--------G--VG--SCL------LELQDDLPLSLVGWRGK 620
L +G G +G + L + ++ + +V +RG
Sbjct: 1734 PALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIES--LVEVVFYRGM 1791
Query: 621 SSVRA 625
+ A
Sbjct: 1792 TMQVA 1796
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich,
structural genomics, PSI-2, protein structure
initiative; 2.21A {Corynebacterium diphtheriae}
Length = 178
Score = 36.3 bits (84), Expect = 0.012
Identities = 21/114 (18%), Positives = 38/114 (33%), Gaps = 22/114 (19%)
Query: 157 GHISRQE--AVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVA 214
G +++Q A+++ L + H + D+ GS IE + + P V
Sbjct: 6 GQLTKQHVRALAI---SALAPKPHETLWDIGGGSGSIA---IEWLRST-----PQTTAVC 54
Query: 215 NDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVL 268
++ R ++ A L I A P + VP D +
Sbjct: 55 FEISEERRERILSNAINLGVSDRIAVQQGA---PRAF------DDVPDNPDVIF 99
>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken
structural genomics/proteomics INI RSGI, structural
genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1
d.142.1.5 PDB: 1vbh_A*
Length = 876
Score = 36.3 bits (84), Expect = 0.038
Identities = 28/126 (22%), Positives = 54/126 (42%), Gaps = 26/126 (20%)
Query: 66 LETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQ 125
L+ +K +P A+ +E +I+E +KE+ + + T +E ++
Sbjct: 294 LDAMKNLMPQAY-------DELVENCNILE-SHYKEMQDIEFTVQENRL----------- 334
Query: 126 MGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMC 185
W LQ R RT ++ K+ ++ E G + + A+ M+ P LD Q H +
Sbjct: 335 --WMLQ-CRTGKRTGKSAVKIAVDMVNE---GLVEPRSAIKMVEPGHLD-QLLHPQFENP 387
Query: 186 AAPGSK 191
+A +
Sbjct: 388 SAYKDQ 393
>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase;
1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1
d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A
2r82_A 2fm4_A
Length = 873
Score = 32.8 bits (75), Expect = 0.38
Identities = 28/118 (23%), Positives = 50/118 (42%), Gaps = 26/118 (22%)
Query: 66 LETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQ 125
+ L+ D+P + ++ L +E F +++ + + T EE K+
Sbjct: 290 ITQLENDMPDCY-------KQFMDLAMKLEKHF-RDMQDMEFTIEEGKL----------- 330
Query: 126 MGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLD 183
+ LQ +R RT+ A ++ L+ E G I+ +EAV I LD Q H +
Sbjct: 331 --YFLQ-TRNGKRTAPAALQIACDLVDE---GMITEEEAVVRIEAKSLD-QLLHPTFN 381
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.7 bits (71), Expect = 0.51
Identities = 5/44 (11%), Positives = 19/44 (43%), Gaps = 4/44 (9%)
Query: 15 AQKRREKEQKKANPKTDTRHENYAE----IVRENKDFEQYYKAQ 54
++ ++ ++KA + ++ +E N+ ++ + Q
Sbjct: 105 SKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQ 148
Score = 30.9 bits (69), Expect = 0.96
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 18/93 (19%)
Query: 16 QKRREKEQKKANPKTDTRHENYAEIVRENKDFEQYYKAQKICPENEWDSMLETLKKDLPT 75
+ +E E + R E + + D K + EW E KKDL
Sbjct: 79 RLTQEPESIR-----KWREEQRKRL--QELDAAS--KVME----QEW---REKAKKDLEE 122
Query: 76 AFRITNCSPEEAKALLSIVESKFFKELVNDQET 108
+ + E+ K I + F+++ D +
Sbjct: 123 WNQRQSEQVEKNKINNRIADKAFYQQP--DADI 153
>1yb2_A Hypothetical protein TA0852; structural genomics,
methyltransferase, thermoplasma acidoph midwest center
for structural genomics, MCSG; 2.01A {Thermoplasma
acidophilum} SCOP: c.66.1.13
Length = 275
Score = 31.6 bits (71), Expect = 0.68
Identities = 15/101 (14%), Positives = 34/101 (33%), Gaps = 17/101 (16%)
Query: 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR 231
++ +L++ G+ ++ I+ ++ G + + D + + +A
Sbjct: 105 RCGLRPGMDILEVGVGSGNMSSYILYALN-------GKGTLTVVERDEDN----LKKAMD 153
Query: 232 LNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVP 272
S I N S D +D V+ D+P
Sbjct: 154 NLSEFYDIGNVRTSRS------DIADFISDQMYDAVIADIP 188
>3qc1_A Immunoglobulin-binding protein 1; PP2A, signaling protein; 2.35A
{Mus musculus}
Length = 243
Score = 31.3 bits (70), Expect = 0.81
Identities = 8/53 (15%), Positives = 19/53 (35%)
Query: 404 HLERCSVFGLLPHQQGPRADNGEAESKPEPEASSPTREPPSKKRKRQPQGYKE 456
L +C + + Q N + + P + +R+ + + YK+
Sbjct: 133 FLTQCHCYHVAEFQLPQTKTNSAENNTASSSMAYPNLVAMASQRQAKIERYKQ 185
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.3 bits (67), Expect = 0.98
Identities = 9/32 (28%), Positives = 17/32 (53%), Gaps = 7/32 (21%)
Query: 67 ETLKKDLPTAFRITNCSPEEAKALLSI---VE 95
+ LKK L + ++ + + A A L+I +E
Sbjct: 20 QALKK-LQASLKLY--ADDSAPA-LAIKATME 47
>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite,
trypanosome; 3.00A {Trypanosoma brucei} SCOP: c.1.12.2
c.8.1.1 d.142.1.5 PDB: 2x0s_A
Length = 913
Score = 30.9 bits (70), Expect = 1.6
Identities = 26/140 (18%), Positives = 52/140 (37%), Gaps = 26/140 (18%)
Query: 44 NKDFEQYYKAQKICPENEWDSMLETLKKDLPTAFRITNCSPEEAKALLSIVESKFFKELV 103
N + E E ++++ +P + + +E ++++
Sbjct: 297 NHSLSLRWAKAHGVGEEERRKRYPSMEEAMPENY-------RLLCDVRKRLE-NHYRDMQ 348
Query: 104 NDQETSEEEKVAPICLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQE 163
+ + T ++ ++ W LQ R RT A ++ ++ E G ISR+E
Sbjct: 349 DLEFTVQDGRL-------------WLLQ-CRNGKRTIHAAVRIAIDMVNE---GLISREE 391
Query: 164 AVSMIPPLLLDVQTHHKVLD 183
AV I P +D H L+
Sbjct: 392 AVLRIDPYQVD-HLMHPNLE 410
>1gwm_A NCP1, non-catalytic protein 1; carbohydrate binding domain,
glucomannan, cellohexaose, mannohexaose, cellulosome;
HET: GLC BGC; 1.15A {Piromyces equi} SCOP: b.18.1.19
PDB: 1gwk_A* 1gwl_A* 1w90_A 1w8t_A* 1w8u_A* 1w8w_A
1w8z_A 1w9f_A 1oh3_A*
Length = 153
Score = 29.3 bits (65), Expect = 2.2
Identities = 13/58 (22%), Positives = 31/58 (53%)
Query: 17 KRREKEQKKANPKTDTRHENYAEIVRENKDFEQYYKAQKICPENEWDSMLETLKKDLP 74
KR + + + D ++E +I+ EN + ++ ++ + I P +E+ + + + DLP
Sbjct: 52 KRNSGSFRGGSLRFDMKNEGKVKILVENSEADEKFEVETISPSDEYVTYILDVDFDLP 109
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative,
structural genomics, NEW YORK SGX research center for
structural genomics; 1.86A {Methanosarcina mazei}
Length = 276
Score = 29.5 bits (66), Expect = 3.1
Identities = 16/101 (15%), Positives = 34/101 (33%), Gaps = 24/101 (23%)
Query: 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKR 231
KVL+ G++T + + P + + D+ L +A+
Sbjct: 32 DTVYPPGAKVLEAGCGIGAQTVILAKN--------NPDAEITSIDISPE---SL-EKARE 79
Query: 232 LNSPCAIITNHDASVMPNVLYTDADGNKVPMK---FDRVLC 269
N + + + NV + A+ +P + FD +
Sbjct: 80 ---------NTEKNGIKNVKFLQANIFSLPFEDSSFDHIFV 111
>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein
structure initiative, midwest center for structural
genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} SCOP:
c.66.1.47 PDB: 3k6r_A 3a25_A* 3a26_A*
Length = 278
Score = 29.5 bits (66), Expect = 3.3
Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 19/102 (18%)
Query: 171 LLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAK 230
+ + V+DM A G + I A V+A + + + + +
Sbjct: 119 MAKVAKPDELVVDMFAGIGHLSLPIAVYGKA---------KVIAIEK-DPYTFKFLVENI 168
Query: 231 RLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVP 272
LN ++ ++ D DR+L
Sbjct: 169 HLNKVEDRMSAYNM---------DNRDFPGENIADRILMGYV 201
>1us7_B HSP90 CO-chaperone CDC37; chaperone CO-chaperone regulation,
ATP-binding, H shock,; 2.3A {Homo sapiens} SCOP:
a.205.1.1 PDB: 2k5b_B 2w0g_A
Length = 265
Score = 29.4 bits (65), Expect = 3.8
Identities = 17/94 (18%), Positives = 34/94 (36%), Gaps = 8/94 (8%)
Query: 361 PGLSQWRPASKDNLDGYGSF-DEVPDKWKTQVRPQM------FPTGDPSHHLERCSVFGL 413
+ P D ++ Y S +E+ + + + D +H++RC GL
Sbjct: 169 ERKKRLGPGGLDPVEVYESLPEELQKCFDVKDVQMLQDAISKMDPTDAKYHMQRCIDSGL 228
Query: 414 -LPHQQGPRADNGEAESKPEPEASSPTREPPSKK 446
+P+ + A GE +P + + K
Sbjct: 229 WVPNSKASEAKEGEEAGPGDPLLEAVPKTGDEKD 262
>3bkx_A SAM-dependent methyltransferase; YP_807781.1,
cyclopropane-fatty-acyl-phospholipid synthase-L protein,
methyltransferase domain; 1.85A {Lactobacillus casei}
Length = 275
Score = 28.8 bits (64), Expect = 5.0
Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 17/103 (16%)
Query: 172 LLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDV---DNNRCYMLVHQ 228
V+ K+L++ G +A + + + SG V D+ D L
Sbjct: 38 AWQVKPGEKILEIGCGQGDLSAVLADQVG-------SSGHVTGIDIASPDYGAPLTLGQA 90
Query: 229 AKRL-NSPCA-IITNHDASVMPNVLYTDADGNKVPMKFDRVLC 269
L P +T H + + + L AD FDRV+
Sbjct: 91 WNHLLAGPLGDRLTVHFNTNLSDDLGPIADQ-----HFDRVVL 128
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural
genomics, riken structural genomics/proteomics in RSGI;
HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Length = 392
Score = 29.1 bits (64), Expect = 5.1
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 7/85 (8%)
Query: 160 SRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDN 219
+R AV + L + KV D +A G + + + + AND+ +
Sbjct: 35 NRDLAVLGLEYLCKKLGRPVKVADPLSASGIRAIRFLLETSCVEK-------AYANDISS 87
Query: 220 NRCYMLVHQAKRLNSPCAIITNHDA 244
++ K N P H
Sbjct: 88 KAIEIMKENFKLNNIPEDRYEIHGM 112
>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural
genomics, structural genomics consortium, SGC; HET: SAM;
1.76A {Homo sapiens}
Length = 196
Score = 27.9 bits (63), Expect = 8.0
Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 3/40 (7%)
Query: 179 HKVLDMCAAPGSKTAQII--EMIHAADSNPVPSGLVVAND 216
+VLD AAPG+ + Q+ ++ A P G V+ D
Sbjct: 24 LRVLDCGAAPGAWS-QVAVQKVNAAGTDPSSPVGFVLGVD 62
>1bwv_A Rubisco, protein (ribulose bisphosphate carboxylase); carbon
dioxide fixation, complex (rubisco-reaction intermedi
high specificity factor; HET: KCX CAP; 2.40A {Galdieria
partita} SCOP: c.1.14.1 d.58.9.1 PDB: 1iwa_A 1bxn_A
Length = 493
Score = 28.2 bits (62), Expect = 9.9
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 14/95 (14%)
Query: 21 KEQKKANPKTDTRHENYAEIVRENKDFEQYYKAQKICPENEWDSMLETLKKDLPTAFRIT 80
+ ++ + + TR +N R Y K W+ + D+ FR+T
Sbjct: 3 QSIEEKSVQERTRIKN----SRYESGVIPYAKM------GYWNPDYQVKDTDVLALFRVT 52
Query: 81 ---NCSPEEAKALLSIVES-KFFKELVNDQETSEE 111
P EA A ++ S + + D T+ +
Sbjct: 53 PQPGVDPIEAAAAVAGESSTATWTVVWTDLLTAAD 87
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,834,872
Number of extensions: 589567
Number of successful extensions: 1385
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1344
Number of HSP's successfully gapped: 37
Length of query: 646
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 546
Effective length of database: 3,909,693
Effective search space: 2134692378
Effective search space used: 2134692378
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 60 (27.4 bits)