RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17365
(646 letters)
>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 313
Score = 101 bits (252), Expect = 3e-24
Identities = 85/313 (27%), Positives = 134/313 (42%), Gaps = 52/313 (16%)
Query: 61 EWDSMLETLKKDLPTAFRIT--NCSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPIC 118
+ E ++K LP FR+ S ++ L ++
Sbjct: 29 RAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRL------------------NKKGFQFKR 70
Query: 119 LPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTH 178
+PW E G+ L +I ++ F G I QEA SM PP+ LD +
Sbjct: 71 VPWAKE--GFCLTREPFSITSTPEFLT-----------GLIYIQEASSMYPPVALDPKPG 117
Query: 179 HKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAI 238
V DM AAPG KT+ + +++ G++ A DVD NR RL I
Sbjct: 118 EIVADMAAAPGGKTSYLAQLMR-------NDGVIYAFDVDENRLRETRLNLSRLGVLNVI 170
Query: 239 ITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLH 298
+ + + + ++ ++FD++L D PCTG GT+ KNP+ T +
Sbjct: 171 LFHSSSLHI----------GELNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQ 220
Query: 299 GIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPALK 358
G+Q R++++G+E+L GG + YSTCSL P E+E VIQ + V+L+ + PAL
Sbjct: 221 GLQMRLLEKGLEVLKPGGILVYSTCSLEPEENEFVIQWALDNFD--VELLPLKYGEPALT 278
Query: 359 YAPGLSQWRPASK 371
G+
Sbjct: 279 NPFGIELSEEIKN 291
>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit
methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 284
Score = 97.1 bits (240), Expect = 6e-23
Identities = 67/308 (21%), Positives = 107/308 (34%), Gaps = 51/308 (16%)
Query: 60 NEWDSMLETLKKDLPTAFRITN--CSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPI 117
+W S++E + P RI S + ALL +E +
Sbjct: 15 EQWQSIVEANNQRPPMWLRINRTHHSRDSWLALL------------------DEAGMKGF 56
Query: 118 CLPWYPEQMGWQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQT 177
YP+ + + + G ++ Q+A + L Q
Sbjct: 57 PHADYPDAVRL--------------ETPAPVHALPGFEDGWVTVQDASAQGCMTWLAPQN 102
Query: 178 HHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCA 237
+LD+CAAPG KT I+E+ A A D+D R + KRL
Sbjct: 103 GEHILDLCAAPGGKTTHILEVAPEAQVV--------AVDIDEQRLSRVYDNLKRLGMKAT 154
Query: 238 IITNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNL 297
+ +FDR+L D PC+ G +R++PDI + L
Sbjct: 155 VKQGDGR---------YPSQWCGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPEL 205
Query: 298 HGIQYRIVKRGVEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITPAL 357
+Q I+ L GG + Y+TCS+ P E+ I+ + T A + P
Sbjct: 206 AQLQSEILDAIWPHLKTGGTLVYATCSVLPEENSLQIKAFLQRTADAELCETGTPEQPGK 265
Query: 358 KYAPGLSQ 365
+ PG +
Sbjct: 266 QNLPGAEE 273
>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId:
9606]}
Length = 293
Score = 92.1 bits (227), Expect = 3e-21
Identities = 62/314 (19%), Positives = 108/314 (34%), Gaps = 35/314 (11%)
Query: 73 LPTAFRITN--CSPEEAKALLSIVESKFFKELVNDQETSEEEKVAPICLPWYPEQMGWQL 130
LP R+ ++ + + + + + P PE +
Sbjct: 2 LPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPE---LLV 58
Query: 131 QLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGS 190
++ + + GH+ Q+ S +P +LLD V+D CAAPG+
Sbjct: 59 FPAQTDLHEHPLY-----------RAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGN 107
Query: 191 KTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNV 250
KT+ + ++ + A D+D R + R C + D
Sbjct: 108 KTSHLAALLKNQGK-------IFAFDLDAKRLASMATLLARAGVSCCELAEEDFL----- 155
Query: 251 LYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNG--NNLHGIQYRIVKRG 308
+ + + +L D C+G G + + TPS + L G Q R +
Sbjct: 156 --AVSPSDPRYHEVHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHA 213
Query: 309 VEMLAVGGKIAYSTCSLNPLEDEAVIQRLIVETQGAVQLVDVSAITP--ALKYAPGLSQW 366
+ ++ YSTCSL E+E V++ + + GA +L P L PG
Sbjct: 214 LTFP-SLQRLVYSTCSLCQEENEDVVRDALQQNPGAFRLAPALPAWPHRGLSTFPGAEHC 272
Query: 367 RPASKDNLDGYGSF 380
AS + G F
Sbjct: 273 LRASPETTLSSGFF 286
>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle
and C-terminal domains {Thermus thermophilus [TaxId:
274]}
Length = 318
Score = 47.6 bits (112), Expect = 2e-06
Identities = 26/173 (15%), Positives = 51/173 (29%), Gaps = 31/173 (17%)
Query: 180 KVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAII 239
+ LD+ + G + VVA D A+ +
Sbjct: 148 RALDVFSYAGGFALHLALGFRE----------VVAVDSSAEALRRAEENARLNGLGNVRV 197
Query: 240 TNHDASVMPNVLYTDADGNKVPMKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHG 299
+A + K +FD V+ D P G
Sbjct: 198 LEANAFDLLR------RLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYK---------- 241
Query: 300 IQYRIVKRGVEMLAVGGKIAYSTCSLNPLED--EAVIQRLIVETQGAVQLVDV 350
+ R +++L GG +A ++CS + E A++ + +++V+
Sbjct: 242 ---EVNLRAIKLLKEGGILATASCSHHMTEPLFYAMVAEAAQDAHRLLRVVEK 291
>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle
and C-terminal domains {Archaeon Pyrococcus horikoshii
[TaxId: 53953]}
Length = 324
Score = 40.6 bits (94), Expect = 3e-04
Identities = 31/210 (14%), Positives = 60/210 (28%), Gaps = 30/210 (14%)
Query: 147 HQFLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSK-----TAQIIEMIHA 201
++ +I E I LD + + L+ PG + T IHA
Sbjct: 106 YRTIIQEGRAKFIVDMRGQ--KTGFFLDQRENRLALEKWVQPGDRVLDVFTYTGGFAIHA 163
Query: 202 ADSNPVPSGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVP 261
A + V+ D AK + + K
Sbjct: 164 AIAGA---DEVIGIDKSPRAIETAKENAKLNGVEDRMKFIVG-----SAFEEMEKLQKKG 215
Query: 262 MKFDRVLCDVPCTGDGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYS 321
KFD V+ D P K+ + + + G+ ++ GG +
Sbjct: 216 EKFDIVVLDPPAFVQH--EKDLKAGLRA-----------YFNVNFAGLNLVKDGGILVTC 262
Query: 322 TCSLNPLEDE--AVIQRLIVETQGAVQLVD 349
+CS + +I + +++++
Sbjct: 263 SCSQHVDLQMFKDMIIAAGAKAGKFLKMLE 292
>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 36.3 bits (83), Expect = 0.010
Identities = 17/127 (13%), Positives = 45/127 (35%), Gaps = 12/127 (9%)
Query: 149 FLIMENATGHISRQEAVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVP 208
++M+ T ++ ++ ++D+ VL+ + G + + + +
Sbjct: 72 VVLMKRGTAITFPKDINMIL--SMMDINPGDTVLEAGSGSGGMSLFLSKAVG-------S 122
Query: 209 SGLVVANDVDNNRCYMLVHQAKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMK---FD 265
G V++ +V + + K + + + ++ D G +K FD
Sbjct: 123 QGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIHKDISGATEDIKSLTFD 182
Query: 266 RVLCDVP 272
V D+
Sbjct: 183 AVALDML 189
>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal
domain {Maize (Zea mays) [TaxId: 4577]}
Length = 380
Score = 31.1 bits (69), Expect = 0.47
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
Query: 128 WQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLD 174
W LQ R RT ++ K+ ++ E G + + A+ M+ P LD
Sbjct: 333 WMLQ-CRTGKRTGKSAVKIAVDMVNE---GLVEPRSAIKMVEPGHLD 375
>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal
domain {Trypanosoma brucei [TaxId: 5691]}
Length = 405
Score = 30.7 bits (68), Expect = 0.63
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 128 WQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLD 174
W LQ R RT A ++ ++ E G ISR+EAV I P +D
Sbjct: 359 WLLQ-CRNGKRTIHAAVRIAIDMVNE---GLISREEAVLRIDPYQVD 401
>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal
domain {Clostridium symbiosum [TaxId: 1512]}
Length = 375
Score = 30.3 bits (67), Expect = 0.70
Identities = 16/47 (34%), Positives = 24/47 (51%), Gaps = 4/47 (8%)
Query: 128 WQLQLSRRAIRTSQAFSKLHQFLIMENATGHISRQEAVSMIPPLLLD 174
+ LQ +R RT+ A ++ L+ E G I+ +EAV I LD
Sbjct: 331 YFLQ-TRNGKRTAPAALQIACDLVDE---GMITEEEAVVRIEAKSLD 373
>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 209
Score = 29.7 bits (66), Expect = 0.73
Identities = 12/80 (15%), Positives = 32/80 (40%), Gaps = 8/80 (10%)
Query: 164 AVSMIPPLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAADSNPVPSGLVVANDVDNNRCY 223
A ++ L ++ +VL + AA G+ + + ++ V G++ A +
Sbjct: 43 AAMILKGHRLKLRGDERVLYLGAASGTTVSHLADI--------VDEGIIYAVEYSAKPFE 94
Query: 224 MLVHQAKRLNSPCAIITNHD 243
L+ + N+ ++ +
Sbjct: 95 KLLELVRERNNIIPLLFDAS 114
>d3vuba_ b.34.6.1 (A:) CcdB {Escherichia coli [TaxId: 562]}
Length = 101
Score = 28.1 bits (63), Expect = 0.93
Identities = 11/84 (13%), Positives = 25/84 (29%), Gaps = 13/84 (15%)
Query: 170 PLLLDVQTHHKVLDMCAAPGSKTAQIIEMIHAAD-SNPVPSGLVVANDVDNNRCYMLVHQ 228
L +DVQ+ +I + A S+ V L + + M+
Sbjct: 15 RLFVDVQSDI-------IDTPGRRMVIPLASARLLSDKVSRELYPVVHIGDESWRMMTTD 67
Query: 229 -----AKRLNSPCAIITNHDASVM 247
+ A +++ + +
Sbjct: 68 MASVPVSVIGEEVADLSHRENDIK 91
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis
[TaxId: 1423]}
Length = 234
Score = 29.1 bits (64), Expect = 1.3
Identities = 16/100 (16%), Positives = 28/100 (28%), Gaps = 4/100 (4%)
Query: 172 LLDVQTHHKVLDMCAAPGSKTAQIIEM---IHAADSNPVPSGLVVANDVDNNRCYMLVHQ 228
+ + H+VLD+ A G D+ V ++ + Q
Sbjct: 11 TAECRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVE-VASSFAQEKGVENVRFQ 69
Query: 229 AKRLNSPCAIITNHDASVMPNVLYTDADGNKVPMKFDRVL 268
S + D + +D K + RVL
Sbjct: 70 QGTAESLPFPDDSFDIITCRYAAHHFSDVRKAVREVARVL 109
>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle
and C-terminal domains {Streptococcus mutans [TaxId:
1309]}
Length = 317
Score = 28.7 bits (63), Expect = 2.4
Identities = 12/109 (11%), Positives = 39/109 (35%), Gaps = 14/109 (12%)
Query: 217 VDNNRCYMLVHQAKRLNSPCAIITNHDASVMP-NVLYTDADGNKVPMKFDRVLCDVPCTG 275
+ + + + ++ +V + + +D ++ D P
Sbjct: 170 TTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFA 229
Query: 276 DGTMRKNPDIWTKWTPSNGNNLHGIQYRIVKRGVEMLAVGGKIAYSTCS 324
R +++ ++ ++++++G+E+L+ G I ST +
Sbjct: 230 ----RNKKEVF---------SVSKDYHKLIRQGLEILSENGLIIASTNA 265
>d3e7ma1 d.174.1.1 (A:77-497) Nitric oxide (NO) synthase oxygenase
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 421
Score = 27.0 bits (60), Expect = 8.6
Identities = 7/37 (18%), Positives = 12/37 (32%)
Query: 532 NKVMGCAFRFCQEGLSSMKAFIGEKRKVRVNREELIT 568
C + C + + K+ R EEL+
Sbjct: 23 TSDFTCKSKSCLGSIMNPKSLTRGPRDKPTPLEELLP 59
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.404
Gapped
Lambda K H
0.267 0.0680 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,408,382
Number of extensions: 114226
Number of successful extensions: 308
Number of sequences better than 10.0: 1
Number of HSP's gapped: 303
Number of HSP's successfully gapped: 17
Length of query: 646
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 555
Effective length of database: 1,158,166
Effective search space: 642782130
Effective search space used: 642782130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.4 bits)