BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17366
(91 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 63.9 bits (154), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/50 (62%), Positives = 37/50 (74%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELR 71
KTVMVA V PA+ N EETL+TLRYA+RAK I N VNEDP ++RE +
Sbjct: 323 KTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 62.8 bits (151), Expect = 5e-11, Method: Composition-based stats.
Identities = 28/49 (57%), Positives = 38/49 (77%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIREL 70
KT+MVAT+ PA+ +Y+E+LSTLR+A+RAK I N VNEDP ++RE
Sbjct: 347 KTIMVATLGPASHSYDESLSTLRFANRAKNIKNKPRVNEDPKDTLLREF 395
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 62.4 bits (150), Expect = 6e-11, Method: Composition-based stats.
Identities = 27/41 (65%), Positives = 34/41 (82%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDP 62
KT+M A +SPA+ NY+ET+STLRYADRAK+I N +NEDP
Sbjct: 305 KTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDP 345
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 58.9 bits (141), Expect = 8e-10, Method: Composition-based stats.
Identities = 27/29 (93%), Positives = 28/29 (96%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
KT MVATVSPAADNY+ETLSTLRYADRAK
Sbjct: 320 KTAMVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 31/50 (62%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 10 LLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59
LLR EN +T MVA +SPA NY+ETLSTLRYADRAK+I N VN
Sbjct: 314 LLR--ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 31/50 (62%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 10 LLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59
LLR EN +T MVA +SPA NY+ETLSTLRYADRAK+I N VN
Sbjct: 330 LLR--ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 377
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 10 LLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59
LLR EN +T MVA +SPA NY+ETLSTLRYADRAK+I N VN
Sbjct: 314 LLR--ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 53.5 bits (127), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 10 LLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59
LLR EN +T MVA +SPA NY+ETLSTLRYADRAK+I N VN
Sbjct: 314 LLR--ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVN 361
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/39 (64%), Positives = 31/39 (79%), Gaps = 2/39 (5%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
KT M+A +SP +Y+ETLSTLRYAD+AKRI AVVN+
Sbjct: 385 KTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQ 421
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
+T ++AT+SPA+ N EETLSTL YA RAK I+N VN+
Sbjct: 329 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
+T ++AT+SPA+ N EETLSTL YA RAK I+N VN+
Sbjct: 329 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
+T ++AT+SPA+ N EETLSTL YA RAK I+N VN+
Sbjct: 331 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
+T ++AT+SPA+ N EETLSTL YA RAK I+N VN+
Sbjct: 329 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
+T ++AT+SPA+ N EETLSTL YA RAK I+N VN+
Sbjct: 329 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
+T ++AT+SPA+ N EETLSTL YA RAK I+N VN+
Sbjct: 320 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
+T ++AT+SPA+ N EETLSTL YA RAK I+N VN+
Sbjct: 328 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 48.1 bits (113), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
+T ++AT+SPA+ N EETLSTL YA RAK I+N VN+
Sbjct: 329 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 45.4 bits (106), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVN 54
+T ++AT+SPA+ N EETLSTL YA RAK I+N
Sbjct: 314 RTSIIATISPASLNLEETLSTLEYAHRAKNILN 346
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/39 (56%), Positives = 27/39 (69%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
KT ++AT+SP + EETLSTL YA RAK I N VN+
Sbjct: 331 KTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 42.7 bits (99), Expect = 5e-05, Method: Composition-based stats.
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 56
+T M+AT+SP + E TL+TLRYADR K + H+
Sbjct: 352 RTCMIATISPGISSCEYTLNTLRYADRVKELSPHS 386
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 25/29 (86%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
KTVM+A VSP++ +++ETL+TL YA RA+
Sbjct: 316 KTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 42.0 bits (97), Expect = 8e-05, Method: Composition-based stats.
Identities = 17/29 (58%), Positives = 25/29 (86%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
KTVM+A VSP++ +++ETL+TL YA RA+
Sbjct: 316 KTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 41.2 bits (95), Expect = 1e-04, Method: Composition-based stats.
Identities = 24/57 (42%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLK 78
+T ++ SP++ N ETLSTLR+ RAK I N A VN + + EL+Q + K K
Sbjct: 300 RTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSP---AELKQMLAKAK 353
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
+T+M+A VSP++ Y++T +TL+YA+RAK I
Sbjct: 325 QTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 39.3 bits (90), Expect = 6e-04, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
+T M+AT+SP + E TL+TLRYA+R K +
Sbjct: 390 RTCMIATISPGMASCENTLNTLRYANRVKEL 420
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 38.9 bits (89), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEML 81
KT+M +SPA N +ET ++L YA R + IVN DP+ + +EV +LK+++
Sbjct: 297 KTLMFVNISPAESNLDETHNSLTYASRVRSIVN------DPSKNVS---SKEVARLKKLV 347
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
+T M+A +SP + E TL+TLRYADR K +
Sbjct: 372 RTCMIAMISPGISSCEYTLNTLRYADRVKEL 402
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 38.5 bits (88), Expect = 0.001, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
+T M+A +SP + E TL+TLRYADR K +
Sbjct: 300 RTCMIAMISPGISSCEYTLNTLRYADRVKEL 330
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 37.4 bits (85), Expect = 0.002, Method: Composition-based stats.
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKE 79
+T +V SPA+ N ET STL + RAK + N VNE+ A E ++ +K KE
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTA---EEWKRRYEKEKE 357
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 36.6 bits (83), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 26/45 (57%), Gaps = 6/45 (13%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARI 66
KT+M VSPA N +ET ++L YA R + IVN DP+ I
Sbjct: 305 KTLMFVNVSPAESNLDETYNSLLYASRVRTIVN------DPSKHI 343
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
K++M+A +SP E+TL+TLRY+ R K
Sbjct: 301 KSIMIANISPTISCCEQTLNTLRYSSRVK 329
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 34.7 bits (78), Expect = 0.013, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
KT+MV VSP N ETL +L++A+R + +
Sbjct: 298 KTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNA 64
+T +V SP++ N ET STL + RAK I N VN + A
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELTA 337
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 33.9 bits (76), Expect = 0.026, Method: Composition-based stats.
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNA 64
+T +V SP++ N ET STL + RAK I N VN + A
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTIKNTVCVNVELTA 337
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 33.5 bits (75), Expect = 0.034, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 23 TVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
++++A ++P Y +T+S L +A R+K ++N NE
Sbjct: 318 SILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNE 355
>pdb|3KIN|B Chain B, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|D Chain D, Kinesin (Dimeric) From Rattus Norvegicus
Length = 117
Score = 33.1 bits (74), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59
+T +V SP+ N ET STL + RAK I N VN
Sbjct: 42 RTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN 79
>pdb|2KIN|B Chain B, Kinesin (Monomeric) From Rattus Norvegicus
Length = 100
Score = 32.7 bits (73), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59
+T +V SP+ N ET STL + RAK I N VN
Sbjct: 46 RTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVN 83
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 32.0 bits (71), Expect = 0.093, Method: Composition-based stats.
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
KT ++ T++P + ++ETL+ L++A AK + N VNE
Sbjct: 300 KTRIICTITPVS--FDETLTALQFASTAKYMKNTPYVNE 336
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADR 48
KT+M +SP++ + ETL++LR+A +
Sbjct: 311 KTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADR 48
KT+M +SP++ + ETL++LR+A +
Sbjct: 311 KTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 30.8 bits (68), Expect = 0.23, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADR 48
KT+M +SP++ + ETL++LR+A +
Sbjct: 310 KTLMFVNISPSSSHINETLNSLRFASK 336
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 30.4 bits (67), Expect = 0.23, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADR 48
KT+M +SP++ + ETL++LR+A +
Sbjct: 311 KTLMFVNISPSSSHINETLNSLRFASK 337
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 30.4 bits (67), Expect = 0.25, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADR 48
KT+M +SP++ + ETL++LR+A +
Sbjct: 322 KTLMFVNISPSSSHINETLNSLRFASK 348
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 30.4 bits (67), Expect = 0.26, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 20/27 (74%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADR 48
KT+M +SPAA + ET+++LR+A +
Sbjct: 335 KTLMFVNISPAALHLNETINSLRFASK 361
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 30.0 bits (66), Expect = 0.38, Method: Composition-based stats.
Identities = 11/27 (40%), Positives = 20/27 (74%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADR 48
KT+M +SP++ + ETL++LR+A +
Sbjct: 367 KTLMFVNISPSSSHINETLNSLRFASK 393
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 29.6 bits (65), Expect = 0.50, Method: Composition-based stats.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
+T +V SP++ N ET STL + RAK I
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 28.9 bits (63), Expect = 0.87, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 4/39 (10%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
KT+M +SP + ET+++LR+A + VN+ +N+
Sbjct: 681 KTLMFVNISPLTKDLNETINSLRFATK----VNNTRINK 715
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 28.5 bits (62), Expect = 0.91, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYA--------DRAK--RIVNHAVVN 59
KT+M VSP D ++E++ +LR+A +AK R +N++V N
Sbjct: 346 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVAN 393
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 28.5 bits (62), Expect = 0.92, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYA--------DRAK--RIVNHAVVN 59
KT+M VSP D ++E++ +LR+A +AK R +N++V N
Sbjct: 349 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVAN 396
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 28.5 bits (62), Expect = 0.92, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYA--------DRAK--RIVNHAVVN 59
KT+M VSP D ++E++ +LR+A +AK R +N++V N
Sbjct: 352 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVAN 399
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 28.5 bits (62), Expect = 0.96, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKR 51
K +M +SP +N E+L++LR+A + +
Sbjct: 346 KMLMFVNISPLEENVSESLNSLRFASKVNQ 375
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 28.5 bits (62), Expect = 0.99, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYA--------DRAK--RIVNHAVVN 59
KT+M VSP D ++E++ +LR+A +AK R +N++V N
Sbjct: 360 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVAN 407
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 28.5 bits (62), Expect = 0.99, Method: Composition-based stats.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 24 VMVATVSPAADNYEETLSTLRYADRAKRI 52
V+V + A EETLS+LR+A R K +
Sbjct: 331 VLVTNIYGEAAQLEETLSSLRFASRMKLV 359
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYA 46
KT+M VSP D ++E++ +LR+A
Sbjct: 349 KTLMFINVSPFQDCFQESVKSLRFA 373
>pdb|3DMA|A Chain A, Crystal Structure Of An Exopolyphosphatase-Related
Protein From Bacteroides Fragilis. Northeast Structural
Genomics Target Bfr192
Length = 343
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPN 63
K V+V+ VSP D +L + D +IVN V N P+
Sbjct: 23 KIVIVSHVSPDGDAIGSSLGLYHFLDSQDKIVNVIVPNAFPD 64
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 26 VATVSPAADNYEETLSTLRYADRAKRI 52
+A +SP + ETLSTLR+ AK++
Sbjct: 309 LACISPHQCDLSETLSTLRFGTSAKKL 335
>pdb|1URJ|A Chain A, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
pdb|1URJ|B Chain B, Single Stranded Dna-Binding Protein(Icp8) From Herpes
Simplex Virus-1
Length = 1136
Score = 27.3 bits (59), Expect = 2.1, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI----VNHAVVNEDPNARIIRELRQEVDKL 77
+T+M T A + L TL+Y D+A + + N + ++ +RQ VD+
Sbjct: 568 RTIMQETYRAATERVMAELETLQYVDQAVPTAMGRLETIITNREALHTVVNNVRQVVDRE 627
Query: 78 KEMLI 82
E L+
Sbjct: 628 VEQLM 632
>pdb|2GAG|A Chain A, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 965
Score = 27.3 bits (59), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 45 YADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLISAGVPVS 89
Y DR + I V E+PNA + R E D + ML + VPV+
Sbjct: 57 YLDRPRGIFAAGV--EEPNALVTVSARHEQDIDESMLPATTVPVT 99
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 26.9 bits (58), Expect = 2.9, Method: Composition-based stats.
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADR 48
KT+M + P ++ ETL++LR+A +
Sbjct: 314 KTLMFVNIPPDPNHISETLNSLRFASK 340
>pdb|3G9K|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3G9K|D Chain D, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd
pdb|3GA9|L Chain L, Crystal Structure Of Bacillus Anthracis Transpeptidase
Enzyme Capd, Crystal Form Ii
Length = 323
Score = 26.6 bits (57), Expect = 3.9, Method: Composition-based stats.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 38 ETLSTLRYADRAKRIVNHAVVNEDPNARI 66
E +S + Y DR K + + VN DPN +
Sbjct: 272 EEISRIAYQDRKKNLGDPNYVNXDPNKXV 300
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 26 VATVSPAADNYEETLSTLRYADRAK 50
+A +SP + ETLSTLR+ AK
Sbjct: 309 LACISPHQCDLSETLSTLRFGTSAK 333
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.132 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,771,687
Number of Sequences: 62578
Number of extensions: 88093
Number of successful extensions: 307
Number of sequences better than 100.0: 62
Number of HSP's better than 100.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 248
Number of HSP's gapped (non-prelim): 62
length of query: 91
length of database: 14,973,337
effective HSP length: 58
effective length of query: 33
effective length of database: 11,343,813
effective search space: 374345829
effective search space used: 374345829
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)