Query psy17366
Match_columns 91
No_of_seqs 108 out of 1048
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 20:33:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 99.9 1.5E-24 3.3E-29 168.2 7.3 82 4-87 290-371 (574)
2 KOG0245|consensus 99.9 1.3E-23 2.9E-28 169.3 6.0 82 5-88 303-384 (1221)
3 KOG0241|consensus 99.8 1.8E-21 3.9E-26 156.8 7.8 79 5-85 306-384 (1714)
4 KOG0243|consensus 99.8 3.5E-21 7.6E-26 155.9 7.3 81 5-87 345-426 (1041)
5 PLN03188 kinesin-12 family pro 99.8 6.3E-20 1.4E-24 150.6 7.4 78 3-82 387-470 (1320)
6 KOG0242|consensus 99.8 6.1E-19 1.3E-23 139.7 7.2 80 4-85 285-365 (675)
7 KOG0244|consensus 99.8 1.1E-18 2.4E-23 140.1 6.8 81 3-85 270-350 (913)
8 cd01364 KISc_BimC_Eg5 Kinesin 99.7 8.3E-18 1.8E-22 124.2 4.9 57 3-61 296-352 (352)
9 cd01365 KISc_KIF1A_KIF1B Kines 99.7 2.4E-17 5.1E-22 122.1 4.7 55 3-59 302-356 (356)
10 cd01373 KISc_KLP2_like Kinesin 99.7 4.3E-17 9.4E-22 120.1 4.3 48 3-52 290-337 (337)
11 cd01370 KISc_KIP3_like Kinesin 99.7 6.5E-17 1.4E-21 119.2 4.1 48 3-52 291-338 (338)
12 KOG0240|consensus 99.6 2.3E-16 5E-21 122.0 3.3 60 4-65 285-344 (607)
13 cd01369 KISc_KHC_KIF5 Kinesin 99.6 8.6E-16 1.9E-20 112.4 4.2 48 3-52 278-325 (325)
14 cd01372 KISc_KIF4 Kinesin moto 99.6 9E-16 2E-20 112.8 4.1 49 3-53 293-341 (341)
15 smart00129 KISc Kinesin motor, 99.6 1.1E-15 2.3E-20 112.0 4.4 55 3-59 281-335 (335)
16 cd01371 KISc_KIF3 Kinesin moto 99.6 1.2E-15 2.6E-20 112.2 4.3 48 3-52 286-333 (333)
17 cd01376 KISc_KID_like Kinesin 99.6 1E-15 2.2E-20 112.0 3.7 46 3-50 274-319 (319)
18 cd01374 KISc_CENP_E Kinesin mo 99.6 2.9E-15 6.3E-20 109.5 4.2 48 3-52 274-321 (321)
19 cd01366 KISc_C_terminal Kinesi 99.6 3.1E-15 6.8E-20 109.5 4.2 51 3-55 279-329 (329)
20 cd01368 KISc_KIF23_like Kinesi 99.5 2.9E-15 6.4E-20 110.8 3.8 45 4-50 301-345 (345)
21 PF00225 Kinesin: Kinesin moto 99.5 3.7E-15 8E-20 108.9 4.3 48 3-52 288-335 (335)
22 cd01367 KISc_KIF2_like Kinesin 99.5 3.1E-15 6.7E-20 109.6 3.9 46 3-50 277-322 (322)
23 cd01375 KISc_KIF9_like Kinesin 99.5 6.4E-15 1.4E-19 108.4 3.8 46 3-50 289-334 (334)
24 COG5059 KIP1 Kinesin-like prot 99.5 1.5E-13 3.3E-18 107.5 7.3 56 3-60 289-344 (568)
25 cd00106 KISc Kinesin motor dom 99.4 1.3E-13 2.9E-18 100.5 3.9 46 3-50 283-328 (328)
26 KOG0246|consensus 99.3 2.8E-12 6E-17 99.9 4.1 51 4-56 494-545 (676)
27 KOG0239|consensus 99.2 5.3E-12 1.2E-16 100.4 2.6 56 3-60 593-648 (670)
28 cd01363 Motor_domain Myosin an 98.3 3.2E-07 7E-12 62.5 1.4 17 15-31 170-186 (186)
29 KOG0247|consensus 98.2 1.8E-06 4E-11 69.4 3.9 53 5-59 391-443 (809)
30 PF04508 Pox_A_type_inc: Viral 81.4 2.7 5.9E-05 19.6 2.6 20 66-85 2-21 (23)
31 PF03195 DUF260: Protein of un 79.8 8.9 0.00019 24.0 5.4 48 35-87 53-100 (101)
32 PF08285 DPM3: Dolichol-phosph 63.0 17 0.00038 22.3 3.8 25 63-87 66-90 (91)
33 COG5509 Uncharacterized small 62.4 16 0.00035 21.0 3.3 22 65-86 32-53 (65)
34 PF03564 DUF1759: Protein of u 61.9 15 0.00032 23.4 3.6 72 14-87 35-115 (145)
35 PRK11546 zraP zinc resistance 49.5 58 0.0013 21.7 4.9 43 42-84 65-108 (143)
36 PF12097 DUF3573: Protein of u 42.7 36 0.00077 26.1 3.4 24 63-86 40-63 (383)
37 PF05308 Mito_fiss_reg: Mitoch 42.6 28 0.00061 25.2 2.7 18 66-83 123-140 (253)
38 PF10392 COG5: Golgi transport 40.6 52 0.0011 21.0 3.6 12 35-46 30-41 (132)
39 PF08581 Tup_N: Tup N-terminal 40.4 41 0.00089 20.1 2.8 22 65-86 57-78 (79)
40 KOG0972|consensus 40.3 76 0.0016 24.1 4.7 26 63-88 306-331 (384)
41 PF06305 DUF1049: Protein of u 38.6 56 0.0012 18.0 3.1 19 65-83 48-66 (68)
42 PF11853 DUF3373: Protein of u 38.1 66 0.0014 25.7 4.3 24 65-88 31-54 (489)
43 TIGR01834 PHA_synth_III_E poly 37.2 46 0.00099 25.1 3.2 27 62-88 293-319 (320)
44 PF06698 DUF1192: Protein of u 36.6 65 0.0014 18.3 3.1 20 65-84 28-47 (59)
45 PF00631 G-gamma: GGL domain; 36.3 30 0.00064 19.7 1.7 22 66-87 3-24 (68)
46 KOG4445|consensus 33.4 1.3E+02 0.0027 22.9 5.0 60 18-88 115-174 (368)
47 KOG4841|consensus 31.4 1.1E+02 0.0025 18.8 3.7 25 63-87 70-94 (95)
48 PRK14127 cell division protein 30.9 47 0.001 21.1 2.1 21 66-86 45-65 (109)
49 PLN03230 acetyl-coenzyme A car 30.6 76 0.0016 24.9 3.6 41 40-80 55-95 (431)
50 TIGR01837 PHA_granule_1 poly(h 29.5 88 0.0019 19.8 3.2 25 62-86 93-117 (118)
51 PF09006 Surfac_D-trimer: Lung 28.6 23 0.00051 19.2 0.4 15 67-81 8-22 (46)
52 PF08776 VASP_tetra: VASP tetr 27.7 1E+02 0.0022 16.2 3.2 20 64-83 10-29 (40)
53 PF07334 IFP_35_N: Interferon- 27.5 1.1E+02 0.0023 18.3 3.1 20 66-85 8-27 (76)
54 PF14916 CCDC92: Coiled-coil d 27.0 52 0.0011 18.7 1.6 22 62-83 18-39 (60)
55 smart00224 GGL G protein gamma 24.3 48 0.001 18.7 1.2 21 68-88 2-22 (63)
56 KOG4634|consensus 23.3 2E+02 0.0044 18.1 3.9 38 45-82 38-77 (105)
57 PF14197 Cep57_CLD_2: Centroso 22.5 1.4E+02 0.003 17.2 2.9 20 65-84 47-66 (69)
58 PF08900 DUF1845: Domain of un 22.3 1.8E+02 0.004 20.3 4.0 15 43-57 40-54 (217)
59 PF14282 FlxA: FlxA-like prote 22.2 1.5E+02 0.0032 18.3 3.2 23 64-86 18-40 (106)
60 PF02172 KIX: KIX domain; Int 21.9 1.9E+02 0.0042 17.3 4.0 56 25-83 26-81 (81)
61 KOG3773|consensus 21.7 1.8E+02 0.004 22.3 4.1 44 9-54 34-79 (354)
62 PF05008 V-SNARE: Vesicle tran 21.7 90 0.002 17.7 2.1 19 64-82 60-78 (79)
63 PF10303 DUF2408: Protein of u 21.6 2.1E+02 0.0046 18.6 4.0 53 28-80 4-56 (134)
64 PF11336 DUF3138: Protein of u 21.3 64 0.0014 25.6 1.7 20 66-85 33-52 (514)
65 TIGR00315 cdhB CO dehydrogenas 21.1 1.1E+02 0.0024 20.6 2.6 49 6-57 82-135 (162)
66 PF08182 Pedibin: Pedibin/Hym- 21.0 87 0.0019 15.9 1.6 14 70-83 2-15 (35)
67 PRK00295 hypothetical protein; 20.9 1.8E+02 0.0039 16.6 3.2 21 65-85 33-53 (68)
68 PRK10265 chaperone-modulator p 20.8 1.5E+02 0.0032 18.1 3.0 40 43-82 50-95 (101)
69 PF04763 DUF562: Protein of un 20.5 1.5E+02 0.0033 19.8 3.1 33 9-47 68-100 (146)
70 PF00224 PK: Pyruvate kinase, 20.4 3.5E+02 0.0076 20.2 5.4 25 22-46 3-27 (348)
71 TIGR03761 ICE_PFL4669 integrat 20.1 2.2E+02 0.0047 20.2 4.0 18 42-59 37-54 (216)
No 1
>KOG4280|consensus
Probab=99.91 E-value=1.5e-24 Score=168.20 Aligned_cols=82 Identities=49% Similarity=0.733 Sum_probs=78.5
Q ss_pred hhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHh
Q psy17366 4 KHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLIS 83 (91)
Q Consensus 4 ~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~~i~~l~~ei~~L~~~L~~ 83 (91)
+|+||+||+ |||||||+|+||+||+|+.++++||+|||+||+|||.|+|+|.+|++++...+++|+++|+.|+.+|..
T Consensus 290 dSkLT~LLq--dSLGGN~kT~mianvsp~~~~~~ETlsTLrfA~Rak~I~nk~~ined~~~~~~~~lq~ei~~Lk~~l~~ 367 (574)
T KOG4280|consen 290 DSKLTRLLQ--DSLGGNSKTTMIANVSPSSDNYEETLSTLRFAQRAKAIKNKPVINEDPKDALLRELQEEIERLKKELDP 367 (574)
T ss_pred hhHHHHHHH--HHcCCCceEEEEEecCchhhhhHHHHHHHHHHHHHHHhhccccccCCcchhhHHHHHHHHHHHHHhhcc
Confidence 688999999 999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy17366 84 AGVP 87 (91)
Q Consensus 84 ~~~~ 87 (91)
.+..
T Consensus 368 ~~~~ 371 (574)
T KOG4280|consen 368 GGSP 371 (574)
T ss_pred ccCc
Confidence 7654
No 2
>KOG0245|consensus
Probab=99.89 E-value=1.3e-23 Score=169.26 Aligned_cols=82 Identities=61% Similarity=0.796 Sum_probs=75.5
Q ss_pred hhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHhc
Q psy17366 5 HWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLISA 84 (91)
Q Consensus 5 ~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~~i~~l~~ei~~L~~~L~~~ 84 (91)
|-||=||| ++|||||||+||+++||.+.||+|||||||||.|||+|+|.+.+|+|+..++|++|++|+.+|+..|...
T Consensus 303 SVLTWLLk--EnLGGNSKTaMIAAlSPAdiNyeETLSTLRYAdRAK~Iv~~avVNEdpnaKLIRELreEv~rLksll~~~ 380 (1221)
T KOG0245|consen 303 SVLTWLLK--ENLGGNSKTAMIAALSPADINYEETLSTLRYADRAKQIVNNAVVNEDPNAKLIRELREEVARLKSLLRAQ 380 (1221)
T ss_pred HHHHHHHH--HhcCCcchhhhhhccChhhcChHHHHHHHHHhhHhhhhhccceeCCCccHHHHHHHHHHHHHHHHHHhcc
Confidence 34555555 9999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred CCCc
Q psy17366 85 GVPV 88 (91)
Q Consensus 85 ~~~~ 88 (91)
+...
T Consensus 381 ~~~~ 384 (1221)
T KOG0245|consen 381 GLGD 384 (1221)
T ss_pred cccc
Confidence 6543
No 3
>KOG0241|consensus
Probab=99.85 E-value=1.8e-21 Score=156.76 Aligned_cols=79 Identities=72% Similarity=0.936 Sum_probs=73.8
Q ss_pred hhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHhc
Q psy17366 5 HWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLISA 84 (91)
Q Consensus 5 ~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~~i~~l~~ei~~L~~~L~~~ 84 (91)
|-||-||+ |+|||||+|+||+||||++++|+||+||||||.|||.|.|.+.+|.++....|+++++|++.|+.+|.+.
T Consensus 306 SVLTwLLk--D~LGGNsrTvMiatvSPaAdnyeeTlStLRYadrAkrIvN~avvNedpnarvirElReEve~lr~qL~~a 383 (1714)
T KOG0241|consen 306 SVLTWLLK--DNLGGNSRTVMIATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARVIRELREEVEKLREQLEQA 383 (1714)
T ss_pred HHHHHHHH--hhcCCCceeEEEEEecccccchHHHHHHHHHHHHHHHhhccccccCCchHHHHHHHHHHHHHHHHHHhhh
Confidence 44566666 9999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred C
Q psy17366 85 G 85 (91)
Q Consensus 85 ~ 85 (91)
+
T Consensus 384 e 384 (1714)
T KOG0241|consen 384 E 384 (1714)
T ss_pred h
Confidence 4
No 4
>KOG0243|consensus
Probab=99.84 E-value=3.5e-21 Score=155.95 Aligned_cols=81 Identities=40% Similarity=0.523 Sum_probs=73.7
Q ss_pred hhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCC-chHHHHHHHHHHHHHHHHHHHh
Q psy17366 5 HWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNED-PNARIIRELRQEVDKLKEMLIS 83 (91)
Q Consensus 5 ~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~-~~~~~i~~l~~ei~~L~~~L~~ 83 (91)
|+||+||+ |||||.+||+||+||||+..+++||+|||.||.|||.|+|+|.+|.. .+...+++|-.||++|+.+|.+
T Consensus 345 SKLTRLLQ--DSLGGkTKT~iIATiSPa~~~lEETlSTLEYA~RAKnIkNKPevNQkl~K~~llKd~~~EIerLK~dl~A 422 (1041)
T KOG0243|consen 345 SKLTRLLQ--DSLGGKTKTCIIATISPAKHNLEETLSTLEYAHRAKNIKNKPEVNQKLMKKTLLKDLYEEIERLKRDLAA 422 (1041)
T ss_pred HHHHHHHH--HHhCCCceeEEEEEeCCCcccHHHHHHHHHHHHHhhhccCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788777 99999999999999999999999999999999999999999999984 4556899999999999999987
Q ss_pred cCCC
Q psy17366 84 AGVP 87 (91)
Q Consensus 84 ~~~~ 87 (91)
+...
T Consensus 423 aReK 426 (1041)
T KOG0243|consen 423 AREK 426 (1041)
T ss_pred hHhh
Confidence 6543
No 5
>PLN03188 kinesin-12 family protein; Provisional
Probab=99.80 E-value=6.3e-20 Score=150.59 Aligned_cols=78 Identities=40% Similarity=0.448 Sum_probs=67.7
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCch------HHHHHHHHHHHHH
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPN------ARIIRELRQEVDK 76 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~------~~~i~~l~~ei~~ 76 (91)
-+|+||+||+ |||||||+|+|||||||+..+++||++||+||+|||.|+|.|.+|.... .+.|++|+.|+.+
T Consensus 387 RDSKLTrLLQ--DSLGGNSKTvMIa~VSPs~~~~eETLSTLrFAsRAK~IKNkpvvNe~~~~~vn~LrelIr~Lk~EL~r 464 (1320)
T PLN03188 387 RDSRLTFLLQ--ESLGGNAKLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQR 464 (1320)
T ss_pred CcchHHHHHH--HhcCCCceEEEEEecCCchhhHHHHHHHHHHHHHHhhcCccceeccchhhhHHHHHHHHHHHHHHHHH
Confidence 4789999999 9999999999999999999999999999999999999999999998543 2356777777777
Q ss_pred HHHHHH
Q psy17366 77 LKEMLI 82 (91)
Q Consensus 77 L~~~L~ 82 (91)
|+....
T Consensus 465 LK~~~~ 470 (1320)
T PLN03188 465 VKANGN 470 (1320)
T ss_pred HHHhcC
Confidence 776643
No 6
>KOG0242|consensus
Probab=99.77 E-value=6.1e-19 Score=139.74 Aligned_cols=80 Identities=31% Similarity=0.439 Sum_probs=67.3
Q ss_pred hhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCc-hHHHHHHHHHHHHHHHHHHH
Q psy17366 4 KHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDP-NARIIRELRQEVDKLKEMLI 82 (91)
Q Consensus 4 ~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~-~~~~i~~l~~ei~~L~~~L~ 82 (91)
+|+||+||+ +||||||+|+|||||+|+..+|+||.+||+||+|||.|++++.+|.-. +...+..++.++..|+.++.
T Consensus 285 DSKLTRiLq--~sLgGn~rt~~I~tisp~~~~~~eT~nTL~fAsrak~i~~~~~~n~~~~~~~~~~~~~~~i~~l~~e~~ 362 (675)
T KOG0242|consen 285 DSKLTRLLQ--DSLGGNARTAIIATISPSSSHYEETKNTLKFASRAKEITTKAQVNVILSDKALLKYLQREIAELEAELE 362 (675)
T ss_pred ccHHHHhch--hhcCCCccEEEEEEeCchhhHHHHHHHHHHHHHHhhhcccccccceecchhhhhHHHHHHHHHHHHHHH
Confidence 567777666 999999999999999999999999999999999999999999999843 33445555788888888876
Q ss_pred hcC
Q psy17366 83 SAG 85 (91)
Q Consensus 83 ~~~ 85 (91)
...
T Consensus 363 ~~~ 365 (675)
T KOG0242|consen 363 RLK 365 (675)
T ss_pred hhc
Confidence 643
No 7
>KOG0244|consensus
Probab=99.76 E-value=1.1e-18 Score=140.06 Aligned_cols=81 Identities=40% Similarity=0.548 Sum_probs=76.4
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHH
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLI 82 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~~i~~l~~ei~~L~~~L~ 82 (91)
.+|+||+||. ||||||+.|+||+||||+..+..||++||+||.||++|+|+|.+|.|+....+..++.+++.|+.+|.
T Consensus 270 RdSkltrlLQ--dslgGns~tlmiaCiSpadsn~~EtlnTl~ya~Rak~iknk~vvN~d~~~~~~~~lK~ql~~l~~ell 347 (913)
T KOG0244|consen 270 RDSKLTRLLQ--DSLGGNSDTLMIACISPADSNAQETLNTLRYADRAKQIKNKPVVNQDPKSFEMLKLKAQLEPLQVELL 347 (913)
T ss_pred hHHHHHHHHH--HHhcCCcceeeeeecChhhhhhhhHHHHHHHhhHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence 3677888777 99999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hcC
Q psy17366 83 SAG 85 (91)
Q Consensus 83 ~~~ 85 (91)
...
T Consensus 348 ~~~ 350 (913)
T KOG0244|consen 348 SKA 350 (913)
T ss_pred hhc
Confidence 764
No 8
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=99.71 E-value=8.3e-18 Score=124.20 Aligned_cols=57 Identities=46% Similarity=0.532 Sum_probs=54.1
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCC
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNED 61 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~ 61 (91)
-+|+||+||+ |+|||||+|+||+||+|+..+++||++||+||+|||+|+|.|.+|.+
T Consensus 296 R~S~LT~lL~--~~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~~a~~~~~i~n~P~~n~~ 352 (352)
T cd01364 296 RESKLTRLLQ--DSLGGRTKTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352 (352)
T ss_pred cccHHHHHHH--HhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccCCC
Confidence 4689999999 99999999999999999999999999999999999999999999863
No 9
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=99.69 E-value=2.4e-17 Score=122.09 Aligned_cols=55 Identities=64% Similarity=0.729 Sum_probs=52.6
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceec
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n 59 (91)
-+|+||+||+ |+|||||+|+||+||+|+..+++||++||+||+||++|++.|.+|
T Consensus 302 R~SkLT~lL~--~~lgg~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~i~~~~~~~ 356 (356)
T cd01365 302 RDSVLTWLLK--ENLGGNSKTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356 (356)
T ss_pred cCcHHHHHHH--HhcCCCceEEEEEEeCCCcccHHHHHHHHHHHHHHhhccCccccC
Confidence 4789999999 999999999999999999999999999999999999999999875
No 10
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=99.67 E-value=4.3e-17 Score=120.10 Aligned_cols=48 Identities=42% Similarity=0.503 Sum_probs=45.9
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRI 52 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I 52 (91)
-+|+||+||+ |+|||||+|+||+||+|+..+++||++||+||+|||.|
T Consensus 290 R~SkLT~lL~--dsLggns~t~~I~~vsP~~~~~~eTl~TL~fa~rak~I 337 (337)
T cd01373 290 RDSKLTFLLR--DSLGGNAKTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337 (337)
T ss_pred cccHHHHHHH--HhcCCCceEEEEEEECCCcccHHHHHHHHHHHHHhhcC
Confidence 3689999999 99999999999999999999999999999999999986
No 11
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=99.66 E-value=6.5e-17 Score=119.23 Aligned_cols=48 Identities=44% Similarity=0.614 Sum_probs=46.1
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRI 52 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I 52 (91)
-+|+||+||+ |+|||||+|+||+||||+..+++||++||+||+|||.|
T Consensus 291 R~SkLT~lL~--d~Lggn~~t~~I~~vsp~~~~~~eTl~TL~fa~ra~~I 338 (338)
T cd01370 291 RDSKLTRLLK--DSLGGNCKTVMIANISPSSSHYEETHNTLKYANRAKNI 338 (338)
T ss_pred cCCHHHHHHH--HhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHHhccC
Confidence 4789999999 99999999999999999999999999999999999986
No 12
>KOG0240|consensus
Probab=99.62 E-value=2.3e-16 Score=122.03 Aligned_cols=60 Identities=32% Similarity=0.361 Sum_probs=55.0
Q ss_pred hhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCchHH
Q psy17366 4 KHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR 65 (91)
Q Consensus 4 ~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~ 65 (91)
+|+||++|+ |||||||+|.+|+|++|+..+-.||.+||+|+.|||.|+|.+.+|.....+
T Consensus 285 DSKLTRILq--dSLGGNsRTtlIi~csPss~n~~ET~STl~fg~rak~ikN~v~~n~e~~~e 344 (607)
T KOG0240|consen 285 DSKLTRILQ--DSLGGNSRTTLIICCSPSSLNEAETKSTLRFGNRAKTIKNTVWVNLELTAE 344 (607)
T ss_pred hhHHHHHHH--HHhCCCcceEEEEecCCccccccccccchhhccccccccchhhhhhHhhHH
Confidence 577777777 999999999999999999999999999999999999999999999865543
No 13
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=99.59 E-value=8.6e-16 Score=112.36 Aligned_cols=48 Identities=33% Similarity=0.427 Sum_probs=46.0
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRI 52 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I 52 (91)
-+|+||+||+ |+|||+|+|+||+||+|+..+++||++||+||+|||.|
T Consensus 278 R~S~LT~lL~--~~L~g~s~t~~I~~vsp~~~~~~eTl~TL~~a~r~~~i 325 (325)
T cd01369 278 RDSKLTRILQ--DSLGGNSRTTLIICCSPSSYNESETLSTLRFGARAKTI 325 (325)
T ss_pred ccCHHHHHHH--HhcCCCCeEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 4789999999 99999999999999999999999999999999999986
No 14
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=99.59 E-value=9e-16 Score=112.78 Aligned_cols=49 Identities=43% Similarity=0.591 Sum_probs=46.9
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIV 53 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~ 53 (91)
-+|+||+||+ |+|||||+|+||+||+|+..+++||++||+||+|||+|+
T Consensus 293 R~S~LT~lL~--~~Lgg~s~t~~I~~vsp~~~~~~eTl~tL~~a~~~~~ik 341 (341)
T cd01372 293 RDSKLTRLLQ--DSLGGNSHTLMIACVSPADSNFEETLNTLKYANRARNIK 341 (341)
T ss_pred cccHHHHHHH--HhcCCCceEEEEEEeCCChhhHHHHHHHHHHHHHhccCC
Confidence 4789999999 999999999999999999999999999999999999985
No 15
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=99.59 E-value=1.1e-15 Score=111.97 Aligned_cols=55 Identities=47% Similarity=0.603 Sum_probs=52.4
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceec
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n 59 (91)
-+|+||+||+ |+|||+|+++||+||+|...+++||++||+||+|+++|++.|.++
T Consensus 281 r~S~LT~lL~--~~L~g~~~~~~i~~vsp~~~~~~eTl~tL~~a~~~~~i~~~p~~~ 335 (335)
T smart00129 281 RDSKLTRLLQ--DSLGGNSKTLMIANISPSLSNLEETLSTLRFASRAKEIKNKAIVN 335 (335)
T ss_pred cCcHhHHHHH--HHcCCCCeEEEEEEcCCCccchHHHHHHHHHHHHHhhcccCCCcC
Confidence 4789999999 999999999999999999999999999999999999999999764
No 16
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=99.58 E-value=1.2e-15 Score=112.18 Aligned_cols=48 Identities=50% Similarity=0.631 Sum_probs=46.2
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRI 52 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I 52 (91)
-+|+||+||+ |+|||||+|+||+||+|+..+++||++||+||+|||.|
T Consensus 286 R~SkLT~lL~--~~l~g~s~t~~I~~vsP~~~~~~eTl~TL~fa~r~r~I 333 (333)
T cd01371 286 RDSKLTRLLQ--DSLGGNSKTVMCANIGPADYNYDETLSTLRYANRAKNI 333 (333)
T ss_pred ccCHHHHHHH--HhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHhhcC
Confidence 4789999999 99999999999999999999999999999999999986
No 17
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=99.58 E-value=1e-15 Score=111.99 Aligned_cols=46 Identities=33% Similarity=0.492 Sum_probs=44.1
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAK 50 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak 50 (91)
-+|+||+||+ |+|||||+|.||+||+|+..+++||++||+||+|||
T Consensus 274 r~S~LT~lL~--~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~fa~r~~ 319 (319)
T cd01376 274 RESKLTRLLQ--DSLGGGSRCIMVANIAPERSFYQDTLSTLNFASRSK 319 (319)
T ss_pred ccCHHHHHHH--HhcCCCccEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 3689999999 999999999999999999999999999999999997
No 18
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=99.56 E-value=2.9e-15 Score=109.50 Aligned_cols=48 Identities=33% Similarity=0.526 Sum_probs=46.1
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRI 52 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I 52 (91)
-+|+||+||+ |+|||||+|.||+||+|...+++||++||+||+||++|
T Consensus 274 R~SkLT~lL~--~~L~g~s~t~~i~~vsp~~~~~~eTl~TL~~a~r~~~i 321 (321)
T cd01374 274 RDSKLTRILQ--PSLSGNARTAIICTISPASSHVEETLNTLKFASRAKKV 321 (321)
T ss_pred cCCHHHHHHH--HhcCCCceEEEEEEeCCccccHHHHHHHHHHHHHHhcC
Confidence 4789999999 99999999999999999999999999999999999986
No 19
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=99.55 E-value=3.1e-15 Score=109.46 Aligned_cols=51 Identities=29% Similarity=0.379 Sum_probs=48.4
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhcc
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNH 55 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~ 55 (91)
-+|+||+||+ |+|||+|+|.||+||+|...+++||++||+||+|+++|++.
T Consensus 279 r~S~LT~lL~--~~l~g~~~t~~i~~vsp~~~~~~etl~tL~~a~~~~~i~~~ 329 (329)
T cd01366 279 RNSKLTYLLQ--DSLGGNSKTLMFVNISPLESNLSETLCSLRFASRVRSVELG 329 (329)
T ss_pred cccHhHHHHH--HhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHHhhcccCC
Confidence 4789999999 99999999999999999999999999999999999999863
No 20
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=99.55 E-value=2.9e-15 Score=110.76 Aligned_cols=45 Identities=24% Similarity=0.394 Sum_probs=43.2
Q ss_pred hhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhh
Q psy17366 4 KHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAK 50 (91)
Q Consensus 4 ~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak 50 (91)
+|+||+||+ |+|||||+|+||+||+|+..+++||++||+||.+|+
T Consensus 301 ~SkLT~lL~--~~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~a~ 345 (345)
T cd01368 301 DSKLTHLFQ--NYFDGEGKARMIVNVNPCASDYDETLHVMKFSAIAQ 345 (345)
T ss_pred CCHHHHHHH--HhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 689999999 999999999999999999999999999999999985
No 21
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=99.55 E-value=3.7e-15 Score=108.92 Aligned_cols=48 Identities=42% Similarity=0.641 Sum_probs=45.1
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRI 52 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I 52 (91)
-+|+||+||+ |+|||||+|.||+||+|+..+++||++||+||.|+|+|
T Consensus 288 r~SkLT~lL~--d~l~g~s~t~~I~~vsp~~~~~~eTl~tL~fa~~~~~I 335 (335)
T PF00225_consen 288 RDSKLTRLLK--DSLGGNSKTILIVCVSPSSEDYEETLSTLRFASRAREI 335 (335)
T ss_dssp GGSHHHHHTG--GGTSSSSEEEEEEEE-SBGGGHHHHHHHHHHHHHHTTE
T ss_pred hcccccceec--ccccccccceeEEEcCCccccHHHHHHHHHHHHHHcCC
Confidence 4789999999 99999999999999999999999999999999999986
No 22
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=99.55 E-value=3.1e-15 Score=109.63 Aligned_cols=46 Identities=48% Similarity=0.594 Sum_probs=43.9
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAK 50 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak 50 (91)
-+|+||+||+ |+|||||+|.||+||+|+..+++||++||+||+|+|
T Consensus 277 RdSkLT~lL~--~~L~g~~~t~~I~~vsp~~~~~~eTl~tL~fa~r~k 322 (322)
T cd01367 277 RGSKLTQVLR--DSFIGNSKTVMIATISPSASSCEHTLNTLRYADRVK 322 (322)
T ss_pred ccCHHHHHHH--HhhCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhhC
Confidence 4789999999 999999999999999999999999999999999986
No 23
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=99.52 E-value=6.4e-15 Score=108.45 Aligned_cols=46 Identities=39% Similarity=0.442 Sum_probs=43.9
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAK 50 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak 50 (91)
-+|+||+||+ |+|||||+|.||+||+|+..+++||++||+||+|++
T Consensus 289 RdSkLT~lL~--d~Lgg~~~t~~I~~vsp~~~~~~eTl~TL~fa~r~~ 334 (334)
T cd01375 289 RNSKLTHVLR--DSLGGNCKTVMLATIWVEPSNLDETLSTLRFAQRVA 334 (334)
T ss_pred cccHHHHHHH--HhcCCCceEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 4789999999 999999999999999999999999999999999985
No 24
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.46 E-value=1.5e-13 Score=107.52 Aligned_cols=56 Identities=34% Similarity=0.499 Sum_probs=52.8
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecC
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~ 60 (91)
..++||+||. |+|||+|+|.|||||+|+..+++||.+||+||.||+.|++.+..|.
T Consensus 289 ReskLTRlLq--~sLgG~~~~~~i~~Isp~~~~~~et~~tL~~a~rak~I~~~~~~~~ 344 (568)
T COG5059 289 RESKLTRLLQ--DSLGGNCNTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVNS 344 (568)
T ss_pred hhhHHHHHHH--HhcCCCccEEEEEEEcCCCCchHHHHHHHHHHHHHhhcCCcccccC
Confidence 4678888888 9999999999999999999999999999999999999999999994
No 25
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=99.42 E-value=1.3e-13 Score=100.46 Aligned_cols=46 Identities=46% Similarity=0.660 Sum_probs=44.1
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAK 50 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak 50 (91)
.+|+||+||+ |+|||+|+|+||+||+|...+++||++||+||+|||
T Consensus 283 r~SkLT~lL~--~~l~g~~~t~~I~~vsp~~~~~~eTl~tL~~a~r~~ 328 (328)
T cd00106 283 RDSKLTRLLQ--DSLGGNSKTLMIANISPSSENYDETLSTLRFASRAK 328 (328)
T ss_pred cCcHHHHHHH--HhcCCCCeEEEEEEeCCchhhHHHHHHHHHHHHhcC
Confidence 4789999999 999999999999999999999999999999999986
No 26
>KOG0246|consensus
Probab=99.28 E-value=2.8e-12 Score=99.92 Aligned_cols=51 Identities=37% Similarity=0.498 Sum_probs=47.0
Q ss_pred hhhhhhhhccCCCCCC-CcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccc
Q psy17366 4 KHWILGLLRYWENPTM-LHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 56 (91)
Q Consensus 4 ~~~ltkllr~qdsLgG-ns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~ 56 (91)
-|+||.+|| ||+=| ||+|+||+||||.....+.||+|||||.|+|......
T Consensus 494 ~SKLTqVLR--DSFIGenSrTcMIA~ISPg~~ScEhTLNTLRYAdRVKeLsv~~ 545 (676)
T KOG0246|consen 494 GSKLTQVLR--DSFIGENSRTCMIATISPGISSCEHTLNTLRYADRVKELSVDG 545 (676)
T ss_pred hhhHHHHHH--HhhcCCCCceEEEEEeCCCcchhhhhHHHHHHHHHHHhhcCCC
Confidence 389999999 99988 9999999999999999999999999999999985443
No 27
>KOG0239|consensus
Probab=99.21 E-value=5.3e-12 Score=100.43 Aligned_cols=56 Identities=29% Similarity=0.347 Sum_probs=52.1
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecC
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~ 60 (91)
-||+||.||. |||||++||.|+++|+|+..++.||+++|+||+|++.+...+....
T Consensus 593 RNSKLT~lLq--~sLGG~sKTLmfv~isP~~~~~~Etl~sL~FA~rv~~~~lG~a~~~ 648 (670)
T KOG0239|consen 593 RNSKLTQLLQ--DSLGGDSKTLMFVNISPAAAALFETLCSLRFATRVRSVELGSARKQ 648 (670)
T ss_pred cccchHHHhH--hhhCCccceeeEEEeCccHHHHhhhhhccchHHHhhceeccccccc
Confidence 4899999998 9999999999999999999999999999999999999988777643
No 28
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=98.27 E-value=3.2e-07 Score=62.50 Aligned_cols=17 Identities=35% Similarity=0.452 Sum_probs=16.8
Q ss_pred CCCCCCcceeEEEeeCC
Q psy17366 15 ENPTMLHKTVMVATVSP 31 (91)
Q Consensus 15 dsLgGns~t~~I~~vsp 31 (91)
|+|||||+|.||+||||
T Consensus 170 ~~L~g~~~t~~i~~vsP 186 (186)
T cd01363 170 DSLGGNSRTLMVACISP 186 (186)
T ss_pred HhcCCCCeEEEEEEeCc
Confidence 99999999999999998
No 29
>KOG0247|consensus
Probab=98.17 E-value=1.8e-06 Score=69.36 Aligned_cols=53 Identities=25% Similarity=0.347 Sum_probs=46.7
Q ss_pred hhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceec
Q psy17366 5 HWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59 (91)
Q Consensus 5 ~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n 59 (91)
|+||.+.+ ..|.|..+.+||+||+|.+++|+|+++.|+||.=|..|.+...++
T Consensus 391 SKLThlfq--~~f~G~gki~MIV~vnp~~e~YdEnl~vlkFaeiaq~v~v~~~~~ 443 (809)
T KOG0247|consen 391 SKLTHLFK--NYFDGKGKIRMIVCVNPKAEDYDENLNVLKFAEIAQEVEVARPVI 443 (809)
T ss_pred HHHHHHHH--HhcCCCCcEEEEEecCCchhhHHHHHHHHHHHHhcccccccCccc
Confidence 55666555 999999999999999999999999999999999999997666653
No 30
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=81.39 E-value=2.7 Score=19.56 Aligned_cols=20 Identities=20% Similarity=0.350 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy17366 66 IIRELRQEVDKLKEMLISAG 85 (91)
Q Consensus 66 ~i~~l~~ei~~L~~~L~~~~ 85 (91)
.|.+++..|..|+.+|..+.
T Consensus 2 E~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 2 EMNRLRNRISDLERQLSECR 21 (23)
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 47789999999999998653
No 31
>PF03195 DUF260: Protein of unknown function DUF260; InterPro: IPR004883 The lateral organ boundaries (LOB) gene is expressed at the adaxial base of initiating lateral organs and encodes a plant-specific protein of unknown function. The N-terminal one half of the LOB protein contains a conserved approximately 100-amino acid domain (the LOB domain) that is present in 42 other Arabidopsis thaliana proteins and in proteins from a variety of other plant species. Genes encoding LOB domain (LBD) proteins are expressed in a variety of temporal- and tissue-specific patterns, suggesting that they may function in diverse processes [] The LOB domain contains conserved blocks of amino acids that identify the LBD gene family. In particular, a conserved C-x(2)-C-x(6)-C-x(3)-C motif, which is defining feature of the LOB domain, is present in all LBD proteins. It is possible that this motif forms a new zinc finger [].
Probab=79.84 E-value=8.9 Score=23.98 Aligned_cols=48 Identities=23% Similarity=0.290 Sum_probs=33.0
Q ss_pred CHHHHHhHHHHHhHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHhcCCC
Q psy17366 35 NYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLISAGVP 87 (91)
Q Consensus 35 ~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~~i~~l~~ei~~L~~~L~~~~~~ 87 (91)
.-+++.+||-|-..++..-. . .--...|..|+.++..++.+|.....+
T Consensus 53 ~R~~a~~Sl~yEA~~R~~dP--v---~Gc~G~i~~L~~ql~~~~~el~~~~~~ 100 (101)
T PF03195_consen 53 QREDAMRSLVYEANARARDP--V---YGCVGIISQLQQQLQQLQAELALVRAQ 100 (101)
T ss_pred chhhHHHHHHHHHHhhccCC--C---cchHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 47889999999766654321 1 112346888999999999998866543
No 32
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=62.96 E-value=17 Score=22.27 Aligned_cols=25 Identities=28% Similarity=0.383 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCC
Q psy17366 63 NARIIRELRQEVDKLKEMLISAGVP 87 (91)
Q Consensus 63 ~~~~i~~l~~ei~~L~~~L~~~~~~ 87 (91)
..+.-.+|++||++-|.+|++.+..
T Consensus 66 cpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 66 CPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4456789999999999999998865
No 33
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=62.35 E-value=16 Score=21.02 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q psy17366 65 RIIRELRQEVDKLKEMLISAGV 86 (91)
Q Consensus 65 ~~i~~l~~ei~~L~~~L~~~~~ 86 (91)
+-|.-|++||++|+.++...+.
T Consensus 32 eRIalLq~EIeRlkAe~~kK~~ 53 (65)
T COG5509 32 ERIALLQAEIERLKAELAKKKA 53 (65)
T ss_pred HHHHHHHHHHHHHHHHHHhhhc
Confidence 4588899999999999987654
No 34
>PF03564 DUF1759: Protein of unknown function (DUF1759); InterPro: IPR005312 This is a small family of proteins of unknown function.
Probab=61.91 E-value=15 Score=23.40 Aligned_cols=72 Identities=22% Similarity=0.302 Sum_probs=46.6
Q ss_pred CCCCCCCcceeEEEeeCCCCCCHHHHHhHH--HHHhHhhhh-------hccceecCCchHHHHHHHHHHHHHHHHHHHhc
Q psy17366 14 WENPTMLHKTVMVATVSPAADNYEETLSTL--RYADRAKRI-------VNHAVVNEDPNARIIRELRQEVDKLKEMLISA 84 (91)
Q Consensus 14 qdsLgGns~t~~I~~vsp~~~~~~ETlsTL--~fa~rak~I-------~~~~~~n~~~~~~~i~~l~~ei~~L~~~L~~~ 84 (91)
..+|.|..+-++- .+..+..+|.+++..| +|+.+..-+ .+-|.... .+...++.+-..+..+-..|...
T Consensus 35 ~~~L~G~A~~~i~-~~~~~~~~Y~~a~~~L~~~yg~~~~i~~~~~~~l~~l~~~~~-~d~~~L~~~~~~v~~~i~~L~~l 112 (145)
T PF03564_consen 35 RSCLKGEAKELIR-GLPLSEENYEEAWELLEERYGNPRRIIQALLEELRNLPPISN-DDPEALRSLVDKVNNCIRALKAL 112 (145)
T ss_pred HHHhcchHHHHHH-cccccchhhHHHHHHHHHHhCCchHHHHHHHHHHhccccccc-hhHHHHHHHHHHHHHHHHHHHHc
Confidence 3888898877664 4455778999999999 777655433 33333222 23345667777777777777766
Q ss_pred CCC
Q psy17366 85 GVP 87 (91)
Q Consensus 85 ~~~ 87 (91)
+..
T Consensus 113 g~~ 115 (145)
T PF03564_consen 113 GVN 115 (145)
T ss_pred CCC
Confidence 544
No 35
>PRK11546 zraP zinc resistance protein; Provisional
Probab=49.48 E-value=58 Score=21.71 Aligned_cols=43 Identities=23% Similarity=0.342 Sum_probs=27.2
Q ss_pred HHHHHhHhhhhhcccee-cCCchHHHHHHHHHHHHHHHHHHHhc
Q psy17366 42 TLRYADRAKRIVNHAVV-NEDPNARIIRELRQEVDKLKEMLISA 84 (91)
Q Consensus 42 TL~fa~rak~I~~~~~~-n~~~~~~~i~~l~~ei~~L~~~L~~~ 84 (91)
.||=-..+|+-.-.... ...|+...|+.|..||..|+.+|.+.
T Consensus 65 ~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL~e~ 108 (143)
T PRK11546 65 ALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSLDEL 108 (143)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444433332 33566777999999999999888753
No 36
>PF12097 DUF3573: Protein of unknown function (DUF3573); InterPro: IPR021956 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 372 to 530 amino acids in length.
Probab=42.70 E-value=36 Score=26.12 Aligned_cols=24 Identities=17% Similarity=0.310 Sum_probs=17.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCC
Q psy17366 63 NARIIRELRQEVDKLKEMLISAGV 86 (91)
Q Consensus 63 ~~~~i~~l~~ei~~L~~~L~~~~~ 86 (91)
+.+.+.+|+.+|+.|+.|+.+.+.
T Consensus 40 ~~~~i~~Lq~QI~~Lq~ei~~l~~ 63 (383)
T PF12097_consen 40 DQQEISELQKQIQQLQAEINQLEE 63 (383)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345677888888888888776543
No 37
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=42.58 E-value=28 Score=25.23 Aligned_cols=18 Identities=22% Similarity=0.434 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy17366 66 IIRELRQEVDKLKEMLIS 83 (91)
Q Consensus 66 ~i~~l~~ei~~L~~~L~~ 83 (91)
-|..|++|+..|+.|++.
T Consensus 123 KIsALEdELs~LRaQIA~ 140 (253)
T PF05308_consen 123 KISALEDELSRLRAQIAK 140 (253)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 477899999999999975
No 38
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=40.57 E-value=52 Score=21.04 Aligned_cols=12 Identities=17% Similarity=0.418 Sum_probs=5.2
Q ss_pred CHHHHHhHHHHH
Q psy17366 35 NYEETLSTLRYA 46 (91)
Q Consensus 35 ~~~ETlsTL~fa 46 (91)
+..+.++.|.|+
T Consensus 30 d~~~~l~kL~~~ 41 (132)
T PF10392_consen 30 DISTPLKKLNFD 41 (132)
T ss_pred cHHHHHHHHHHH
Confidence 344444444443
No 39
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=40.39 E-value=41 Score=20.08 Aligned_cols=22 Identities=18% Similarity=0.427 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHhcCC
Q psy17366 65 RIIRELRQEVDKLKEMLISAGV 86 (91)
Q Consensus 65 ~~i~~l~~ei~~L~~~L~~~~~ 86 (91)
+.-..+++||.+|+.+|...+.
T Consensus 57 kmK~~YEeEI~rLr~eLe~r~~ 78 (79)
T PF08581_consen 57 KMKQQYEEEIARLRRELEQRGR 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHCHHTT
T ss_pred HHHHHHHHHHHHHHHHHHhhCC
Confidence 3455688999999999987664
No 40
>KOG0972|consensus
Probab=40.32 E-value=76 Score=24.06 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy17366 63 NARIIRELRQEVDKLKEMLISAGVPV 88 (91)
Q Consensus 63 ~~~~i~~l~~ei~~L~~~L~~~~~~~ 88 (91)
..+.+.+...|++.++.++.+.+...
T Consensus 306 rT~~L~eVm~e~E~~KqemEe~G~~m 331 (384)
T KOG0972|consen 306 RTETLDEVMDEIEQLKQEMEEQGAKM 331 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34456666667777777766665543
No 41
>PF06305 DUF1049: Protein of unknown function (DUF1049); InterPro: IPR010445 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=38.63 E-value=56 Score=18.02 Aligned_cols=19 Identities=47% Similarity=0.642 Sum_probs=13.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy17366 65 RIIRELRQEVDKLKEMLIS 83 (91)
Q Consensus 65 ~~i~~l~~ei~~L~~~L~~ 83 (91)
..++++++++++++.++++
T Consensus 48 ~~~~~~~k~l~~le~e~~~ 66 (68)
T PF06305_consen 48 RRIRRLRKELKKLEKELEQ 66 (68)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 3466777777777777664
No 42
>PF11853 DUF3373: Protein of unknown function (DUF3373); InterPro: IPR021803 This family of proteins are functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 472 to 574 amino acids in length.
Probab=38.07 E-value=66 Score=25.68 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCc
Q psy17366 65 RIIRELRQEVDKLKEMLISAGVPV 88 (91)
Q Consensus 65 ~~i~~l~~ei~~L~~~L~~~~~~~ 88 (91)
+.|.+|++|+++|++|+.+....+
T Consensus 31 qkie~L~kql~~Lk~q~~~l~~~v 54 (489)
T PF11853_consen 31 QKIEALKKQLEELKAQQDDLNDRV 54 (489)
T ss_pred HHHHHHHHHHHHHHHhhccccccc
Confidence 368999999999999987665544
No 43
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=37.25 E-value=46 Score=25.08 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy17366 62 PNARIIRELRQEVDKLKEMLISAGVPV 88 (91)
Q Consensus 62 ~~~~~i~~l~~ei~~L~~~L~~~~~~~ 88 (91)
.-.+.+.+|+.++..|+++|.+.+..+
T Consensus 293 e~~krL~ELrR~vr~L~k~l~~l~~~~ 319 (320)
T TIGR01834 293 EAHQRIQQLRREVKSLKKRLGDLEANP 319 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC
Confidence 334568899999999999998876543
No 44
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=36.60 E-value=65 Score=18.26 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy17366 65 RIIRELRQEVDKLKEMLISA 84 (91)
Q Consensus 65 ~~i~~l~~ei~~L~~~L~~~ 84 (91)
.-|..|+.||++++.++...
T Consensus 28 ~RIa~L~aEI~R~~~~~~~K 47 (59)
T PF06698_consen 28 ERIALLEAEIARLEAAIAKK 47 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44777888888888877654
No 45
>PF00631 G-gamma: GGL domain; InterPro: IPR015898 This entry represents the G protein gamma subunit and the GGL (G protein gamma-like) domain, which are related in sequence and are comprised of an extended alpha-helical polypeptide. The G protein gamma subunit forms a stable dimer with the beta subunit, but it does not make any contact with the alpha subunit, which contacts the opposite face of the beta subunit. The GGL domain is found in several RGS (regulators of G protein signaling) proteins. GGL domains can interact with beta subunits to form novel dimers that prevent gamma subunit binding, and may prevent heterotrimer formation by inhibiting alpha subunit binding. The interaction between G protein beta-5 neuro-specific isoforms and RGS GGL domains may represent a general mode of binding between beta-propeller proteins and their partners [].; GO: 0004871 signal transducer activity, 0007186 G-protein coupled receptor protein signaling pathway, 0005834 heterotrimeric G-protein complex; PDB: 3PSC_G 3SN6_G 1OMW_G 2BCJ_G 1GG2_G 3PVW_G 3PVU_G 3AH8_G 3CIK_G 1GP2_G ....
Probab=36.31 E-value=30 Score=19.65 Aligned_cols=22 Identities=18% Similarity=0.376 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCC
Q psy17366 66 IIRELRQEVDKLKEMLISAGVP 87 (91)
Q Consensus 66 ~i~~l~~ei~~L~~~L~~~~~~ 87 (91)
....++.|++.|+.+|......
T Consensus 3 ~~~~l~~ei~~L~~el~~~r~~ 24 (68)
T PF00631_consen 3 EKDQLKREIEQLRQELERERIK 24 (68)
T ss_dssp HHHHHHHHHHHHHHHHTS----
T ss_pred HHHHHHHHHHHHHHHHccccee
Confidence 3567888999999988764433
No 46
>KOG4445|consensus
Probab=33.39 E-value=1.3e+02 Score=22.94 Aligned_cols=60 Identities=15% Similarity=0.071 Sum_probs=44.1
Q ss_pred CCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHhcCCCc
Q psy17366 18 TMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLISAGVPV 88 (91)
Q Consensus 18 gGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~~i~~l~~ei~~L~~~L~~~~~~~ 88 (91)
.|.|-+++++=-+..+....+...-++|+=-||.+. ...+.|++|+++++..++.+...+
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~-----------~~~~~lrqe~q~~~~~~qh~~~~~ 174 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLT-----------ECLTGLRQEIQDAQKERQHMKEQV 174 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHhhhhH
Confidence 677888888877766667777788888886666653 346678888888888777665544
No 47
>KOG4841|consensus
Probab=31.38 E-value=1.1e+02 Score=18.83 Aligned_cols=25 Identities=16% Similarity=0.260 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcCCC
Q psy17366 63 NARIIRELRQEVDKLKEMLISAGVP 87 (91)
Q Consensus 63 ~~~~i~~l~~ei~~L~~~L~~~~~~ 87 (91)
..+.-.+|..+|++-+++|+..+..
T Consensus 70 c~eA~veL~~~IkEAr~~L~rkg~r 94 (95)
T KOG4841|consen 70 CEEAAVELQSQIKEARADLARKGLR 94 (95)
T ss_pred cHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3455678999999999999987754
No 48
>PRK14127 cell division protein GpsB; Provisional
Probab=30.86 E-value=47 Score=21.09 Aligned_cols=21 Identities=33% Similarity=0.283 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCC
Q psy17366 66 IIRELRQEVDKLKEMLISAGV 86 (91)
Q Consensus 66 ~i~~l~~ei~~L~~~L~~~~~ 86 (91)
.+.+|++++..|+.+|.+.+.
T Consensus 45 e~~~Lk~e~~~l~~~l~e~~~ 65 (109)
T PRK14127 45 EIEELQQENARLKAQVDELTK 65 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666655443
No 49
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=30.64 E-value=76 Score=24.94 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=30.3
Q ss_pred HhHHHHHhHhhhhhccceecCCchHHHHHHHHHHHHHHHHH
Q psy17366 40 LSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEM 80 (91)
Q Consensus 40 lsTL~fa~rak~I~~~~~~n~~~~~~~i~~l~~ei~~L~~~ 80 (91)
--.|+|-++-+-+++.|+.+.-...+-|.+|++.|+.|+..
T Consensus 55 ~~~~~~~~~~~~~~~~~~~~~l~fe~pi~ele~ki~el~~~ 95 (431)
T PLN03230 55 TGALKILNRFKPLKNKPKPVTLPFEKPIVDLENRIDEVREL 95 (431)
T ss_pred ccHHHHHHhcCCCCCCCCCCccchhhHHHHHHHHHHHHHhh
Confidence 34688889999999998877655556677777777776653
No 50
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=29.52 E-value=88 Score=19.81 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcCC
Q psy17366 62 PNARIIRELRQEVDKLKEMLISAGV 86 (91)
Q Consensus 62 ~~~~~i~~l~~ei~~L~~~L~~~~~ 86 (91)
+..+.+..|..+|..|..+|.+...
T Consensus 93 ~tk~ev~~L~~RI~~Le~~l~~l~~ 117 (118)
T TIGR01837 93 PSREEIEALSAKIEQLAVQVEELRR 117 (118)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456789999999999999887543
No 51
>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46. It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....
Probab=28.64 E-value=23 Score=19.17 Aligned_cols=15 Identities=20% Similarity=0.523 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q psy17366 67 IRELRQEVDKLKEML 81 (91)
Q Consensus 67 i~~l~~ei~~L~~~L 81 (91)
+..|+.++..|+..+
T Consensus 8 v~aL~~qv~~Lq~~f 22 (46)
T PF09006_consen 8 VEALQGQVQRLQAAF 22 (46)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 334444444444443
No 52
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=27.70 E-value=1e+02 Score=16.16 Aligned_cols=20 Identities=40% Similarity=0.702 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy17366 64 ARIIRELRQEVDKLKEMLIS 83 (91)
Q Consensus 64 ~~~i~~l~~ei~~L~~~L~~ 83 (91)
.+.+.+++.|+.+.+.++-+
T Consensus 10 qEIL~EvrkEl~K~K~EIIe 29 (40)
T PF08776_consen 10 QEILEEVRKELQKVKEEIIE 29 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45677788888887777654
No 53
>PF07334 IFP_35_N: Interferon-induced 35 kDa protein (IFP 35) N-terminus; InterPro: IPR009938 This entry represents the N terminus of interferon-induced 35 kDa protein (IFP 35) (approximately 80 residues long), which contains a leucine zipper motif in an alpha helical configuration []. This group of proteins also includes N-myc-interactor (Nmi), a homologous interferon-induced protein.
Probab=27.50 E-value=1.1e+02 Score=18.32 Aligned_cols=20 Identities=25% Similarity=0.295 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy17366 66 IIRELRQEVDKLKEMLISAG 85 (91)
Q Consensus 66 ~i~~l~~ei~~L~~~L~~~~ 85 (91)
.-.+|+.+|++|+.+|++..
T Consensus 8 En~~Lk~eiqkle~ELq~~~ 27 (76)
T PF07334_consen 8 ENARLKEEIQKLEAELQQNK 27 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34466777777766666543
No 54
>PF14916 CCDC92: Coiled-coil domain of unknown function
Probab=26.95 E-value=52 Score=18.74 Aligned_cols=22 Identities=18% Similarity=0.389 Sum_probs=15.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHh
Q psy17366 62 PNARIIRELRQEVDKLKEMLIS 83 (91)
Q Consensus 62 ~~~~~i~~l~~ei~~L~~~L~~ 83 (91)
.....+..|-+||+.|+..-.+
T Consensus 18 eH~~tL~~LH~EIe~Lq~~~~d 39 (60)
T PF14916_consen 18 EHAQTLKGLHAEIERLQKRNKD 39 (60)
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 3445677888888888876544
No 55
>smart00224 GGL G protein gamma subunit-like motifs.
Probab=24.35 E-value=48 Score=18.69 Aligned_cols=21 Identities=33% Similarity=0.566 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCc
Q psy17366 68 RELRQEVDKLKEMLISAGVPV 88 (91)
Q Consensus 68 ~~l~~ei~~L~~~L~~~~~~~ 88 (91)
..++.+++.|+.++...-..+
T Consensus 2 ~~~~~~ve~Lr~el~~~Rikv 22 (63)
T smart00224 2 DQLRKEVEQLRKELSRERIKV 22 (63)
T ss_pred hHHHHHHHHHHHHHCCceehH
Confidence 356778888888876654443
No 56
>KOG4634|consensus
Probab=23.26 E-value=2e+02 Score=18.10 Aligned_cols=38 Identities=16% Similarity=0.242 Sum_probs=26.4
Q ss_pred HHhHhhhhhcc-c-eecCCchHHHHHHHHHHHHHHHHHHH
Q psy17366 45 YADRAKRIVNH-A-VVNEDPNARIIRELRQEVDKLKEMLI 82 (91)
Q Consensus 45 fa~rak~I~~~-~-~~n~~~~~~~i~~l~~ei~~L~~~L~ 82 (91)
|-.+.|.++.+ | ....++..+.-++|++|+.+|..+..
T Consensus 38 FldKvREy~~ks~~Gklvds~pe~e~eLk~el~rla~qfg 77 (105)
T KOG4634|consen 38 FLDKVREYKKKSPAGKLVDSDPEYEQELKEELFRLAQQFG 77 (105)
T ss_pred HHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHHHHHhC
Confidence 56677777655 2 22336666777789999999888765
No 57
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=22.50 E-value=1.4e+02 Score=17.22 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q psy17366 65 RIIRELRQEVDKLKEMLISA 84 (91)
Q Consensus 65 ~~i~~l~~ei~~L~~~L~~~ 84 (91)
..+..|++|++.|+.+|...
T Consensus 47 ~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 47 EENNKLKEENEALRKELEEL 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 35778888888888888754
No 58
>PF08900 DUF1845: Domain of unknown function (DUF1845); InterPro: IPR014996 Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=22.27 E-value=1.8e+02 Score=20.33 Aligned_cols=15 Identities=33% Similarity=0.361 Sum_probs=10.5
Q ss_pred HHHHhHhhhhhccce
Q psy17366 43 LRYADRAKRIVNHAV 57 (91)
Q Consensus 43 L~fa~rak~I~~~~~ 57 (91)
-.|+++++.|.....
T Consensus 40 ~~~~~~~~~i~~~a~ 54 (217)
T PF08900_consen 40 PGFASRLNRIWRDAR 54 (217)
T ss_pred HHHHHHHHHHHHHHh
Confidence 477888888876544
No 59
>PF14282 FlxA: FlxA-like protein
Probab=22.15 E-value=1.5e+02 Score=18.33 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC
Q psy17366 64 ARIIRELRQEVDKLKEMLISAGV 86 (91)
Q Consensus 64 ~~~i~~l~~ei~~L~~~L~~~~~ 86 (91)
...|..|+.+|..|+.+|.+...
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~ 40 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQ 40 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 56688888888888888876543
No 60
>PF02172 KIX: KIX domain; InterPro: IPR003101 The nuclear factor CREB activates transcription of target genes in part through direct interactions with the KIX domain of the coactivator CBP in a phosphorylation-dependent manner []. This provides a model for activator:coactivator interactions. The KIX domain of CBP also binds to transactivation domains of other nuclear factors including Myb and Jun.; GO: 0003712 transcription cofactor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2KWF_A 1KDX_A 2LQH_A 2LQI_A 1SB0_A 2AGH_B.
Probab=21.87 E-value=1.9e+02 Score=17.28 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=28.3
Q ss_pred EEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHHh
Q psy17366 25 MVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLIS 83 (91)
Q Consensus 25 ~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~~i~~l~~ei~~L~~~L~~ 83 (91)
++=+..|.+.+-..-.+-+.| |++|....-.......+=-..|...|-+++.+|++
T Consensus 26 I~P~pdp~a~~d~rm~~l~~y---arkvE~~~fe~A~sreeYY~llA~kiy~iqKel~e 81 (81)
T PF02172_consen 26 IFPTPDPNAMNDPRMKNLIEY---ARKVEKDMFETAQSREEYYHLLAEKIYKIQKELEE 81 (81)
T ss_dssp HS-SSSCCCCCSHHHHHHHHH---HHHHHHHHHHC-SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCCCChhhhhhHHHHHHHHH---HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhcC
Confidence 333334444433333333344 45555555555555555555666777777777753
No 61
>KOG3773|consensus
Probab=21.69 E-value=1.8e+02 Score=22.26 Aligned_cols=44 Identities=23% Similarity=0.185 Sum_probs=34.3
Q ss_pred hhhccCCC-CCCCcceeEEEeeCCCCCCHHHHHhHH-HHHhHhhhhhc
Q psy17366 9 GLLRYWEN-PTMLHKTVMVATVSPAADNYEETLSTL-RYADRAKRIVN 54 (91)
Q Consensus 9 kllr~qds-LgGns~t~~I~~vsp~~~~~~ETlsTL-~fa~rak~I~~ 54 (91)
++|+ +. ++|.|--.+.+|..-+...+++..++| +++..++.-.-
T Consensus 34 ~ll~--~~~~~GaSagsl~a~~ll~~~~l~~a~~~l~~~v~e~~~~s~ 79 (354)
T KOG3773|consen 34 RLLK--DRSIAGASAGSLVACDLLCGLSLEEATGELYKMVDEARRKSL 79 (354)
T ss_pred HHhc--cccccCcccchHHHhhhhccccHHHHHHHHHHHHHHHHHhhc
Confidence 4555 88 899999999999999888899999877 66665554443
No 62
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=21.65 E-value=90 Score=17.74 Aligned_cols=19 Identities=37% Similarity=0.480 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy17366 64 ARIIRELRQEVDKLKEMLI 82 (91)
Q Consensus 64 ~~~i~~l~~ei~~L~~~L~ 82 (91)
...++.++.++..|+.++.
T Consensus 60 ~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 60 KSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3457777777777777765
No 63
>PF10303 DUF2408: Protein of unknown function (DUF2408); InterPro: IPR018810 This entry represents a family of proteins conserved in fungi whose function is unknown.
Probab=21.65 E-value=2.1e+02 Score=18.57 Aligned_cols=53 Identities=13% Similarity=0.233 Sum_probs=26.3
Q ss_pred eeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCchHHHHHHHHHHHHHHHHH
Q psy17366 28 TVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEM 80 (91)
Q Consensus 28 ~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~~i~~l~~ei~~L~~~ 80 (91)
.|+|+-....|.+-|++-.-.+-.-+.++....+.....+..|+.++.+....
T Consensus 4 ~i~~~L~pi~ekLisIrR~L~~~~t~~k~~~~~~~~~~el~~lq~qL~eIe~~ 56 (134)
T PF10303_consen 4 PISPELQPIYEKLISIRRSLLSLNTRSKFSDSSEESSSELKPLQEQLKEIESM 56 (134)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHhccCCCccccccHHHHHHHHHHHHHHHHh
Confidence 45666666667777765543333222222211122344566666666655544
No 64
>PF11336 DUF3138: Protein of unknown function (DUF3138); InterPro: IPR021485 This family of proteins with unknown function appear to be restricted to Proteobacteria.
Probab=21.30 E-value=64 Score=25.63 Aligned_cols=20 Identities=20% Similarity=0.416 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHhcC
Q psy17366 66 IIRELRQEVDKLKEMLISAG 85 (91)
Q Consensus 66 ~i~~l~~ei~~L~~~L~~~~ 85 (91)
+++.|++++.+|+.+|+...
T Consensus 33 ql~aLq~~v~eL~~~laa~~ 52 (514)
T PF11336_consen 33 QLQALQDQVNELRAKLAAKP 52 (514)
T ss_pred HHHHHHHHHHHHHHHHhcCC
Confidence 45556666666666665443
No 65
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=21.07 E-value=1.1e+02 Score=20.59 Aligned_cols=49 Identities=18% Similarity=0.142 Sum_probs=28.9
Q ss_pred hhhhhhcc--CCCCC--CCcceeEEEeeCCCCCCHHHHHhHHH-HHhHhhhhhccce
Q psy17366 6 WILGLLRY--WENPT--MLHKTVMVATVSPAADNYEETLSTLR-YADRAKRIVNHAV 57 (91)
Q Consensus 6 ~ltkllr~--qdsLg--Gns~t~~I~~vsp~~~~~~ETlsTL~-fa~rak~I~~~~~ 57 (91)
.+.++++- .+.+. |++-++++. .-..+..+..+++|+ |+ ..|.|.-+..
T Consensus 82 ~~g~~~~~p~~e~~~g~g~~Dlvlfv--G~~~y~~~~~ls~lk~f~-~~~~i~l~~~ 135 (162)
T TIGR00315 82 EITQFLADPSWEGFDGEGNYDLVLFL--GIIYYYLSQMLSSLKHFS-HIVTIAIDKY 135 (162)
T ss_pred HHHHhccCchhhhccCCCCcCEEEEe--CCcchHHHHHHHHHHhhc-CcEEEEecCC
Confidence 34444442 34554 344443333 334466778999998 98 8888865543
No 66
>PF08182 Pedibin: Pedibin/Hym-346 family; InterPro: IPR012594 This family consists of the pedibin and Hym-346 signalling peptides. These two peptides have been isolated from Hydra attenuata (Hydra) (Hydra vulgaris) and Hydra magnipapillata (Hydra). Experiments have indicated that both cause a reduction in the positional value gradient, the principle patterning process governing the maintenance of form in the adult hydra. The peptides cause an increase in the rate of foot regeneration following bisection of the body column. Thus both play important signalling roles in patterning processes in cnidaria and maybe in more complex metazoans [].
Probab=21.05 E-value=87 Score=15.91 Aligned_cols=14 Identities=36% Similarity=0.401 Sum_probs=7.3
Q ss_pred HHHHHHHHHHHHHh
Q psy17366 70 LRQEVDKLKEMLIS 83 (91)
Q Consensus 70 l~~ei~~L~~~L~~ 83 (91)
|++||.-|+..+.+
T Consensus 2 L~~EI~~Lq~~~a~ 15 (35)
T PF08182_consen 2 LCAEIDVLQIQLAD 15 (35)
T ss_pred HHHHHHHHHHHHhc
Confidence 45555555555443
No 67
>PRK00295 hypothetical protein; Provisional
Probab=20.93 E-value=1.8e+02 Score=16.59 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcC
Q psy17366 65 RIIRELRQEVDKLKEMLISAG 85 (91)
Q Consensus 65 ~~i~~l~~ei~~L~~~L~~~~ 85 (91)
..|..|+.++..|..+|...+
T Consensus 33 ~~I~~L~~ql~~L~~rl~~~~ 53 (68)
T PRK00295 33 RVIERLQLQMAALIKRQEEMV 53 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 456777777777777777654
No 68
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=20.84 E-value=1.5e+02 Score=18.12 Aligned_cols=40 Identities=23% Similarity=0.162 Sum_probs=21.8
Q ss_pred HHHHhHhhhhhccceecCCch------HHHHHHHHHHHHHHHHHHH
Q psy17366 43 LRYADRAKRIVNHAVVNEDPN------ARIIRELRQEVDKLKEMLI 82 (91)
Q Consensus 43 L~fa~rak~I~~~~~~n~~~~------~~~i~~l~~ei~~L~~~L~ 82 (91)
+.-+.+|......-.+|..-- -+.+.+|++|+..|+.+|.
T Consensus 50 l~r~~~a~rL~~dl~in~~gialvl~LLd~i~~Lr~el~~L~~~l~ 95 (101)
T PRK10265 50 AIVVQRAVRLRHELALDWPGIAVALTLLDEIAHLKQENRLLRQRLS 95 (101)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666665321 1235555556666555554
No 69
>PF04763 DUF562: Protein of unknown function (DUF562); InterPro: IPR006850 This represents a conserved region found in a number of Chlamydophila pneumoniae proteins.
Probab=20.55 E-value=1.5e+02 Score=19.80 Aligned_cols=33 Identities=15% Similarity=0.290 Sum_probs=23.4
Q ss_pred hhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHh
Q psy17366 9 GLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYAD 47 (91)
Q Consensus 9 kllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~ 47 (91)
++|. +...|.+-|+|++-.+-+..+ +..|+.|+
T Consensus 68 ~~l~--~~~~grsFTvI~~elp~g~~D----iR~LqLAS 100 (146)
T PF04763_consen 68 QILN--DDSQGRSFTVILTELPEGSAD----IRCLQLAS 100 (146)
T ss_pred HHhc--CCccCceEEEEEEcCCCCccc----hhhhhhhh
Confidence 4555 888899999999876655544 45677765
No 70
>PF00224 PK: Pyruvate kinase, barrel domain; InterPro: IPR015793 Pyruvate kinase (2.7.1.40 from EC) (PK) catalyses the final step in glycolysis [], the conversion of phosphoenolpyruvate to pyruvate with concomitant phosphorylation of ADP to ATP: ADP + phosphoenolpyruvate = ATP + pyruvate The enzyme, which is found in all living organisms, requires both magnesium and potassium ions for its activity. In vertebrates, there are four tissue-specific isozymes: L (liver), R (red cells), M1 (muscle, heart and brain), and M2 (early foetal tissue). In plants, PK exists as cytoplasmic and plastid isozymes, while most bacteria and lower eukaryotes have one form, except in certain bacteria, such as Escherichia coli, that have two isozymes. All isozymes appear to be tetramers of identical subunits of ~500 residues. PK helps control the rate of glycolysis, along with phosphofructokinase (IPR000023 from INTERPRO) and hexokinase (IPR001312 from INTERPRO). PK possesses allosteric sites for numerous effectors, yet the isozymes respond differently, in keeping with their different tissue distributions []. The activity of L-type (liver) PK is increased by fructose-1,6-bisphosphate (F1,6BP) and lowered by ATP and alanine (gluconeogenic precursor), therefore when glucose levels are high, glycolysis is promoted, and when levels are low, gluconeogenesis is promoted. L-type PK is also hormonally regulated, being activated by insulin and inhibited by glucagon, which covalently modifies the PK enzyme. M1-type (muscle, brain) PK is inhibited by ATP, but F1,6BP and alanine have no effect, which correlates with the function of muscle and brain, as opposed to the liver. The structure of several pyruvate kinases from various organisms have been determined [, ]. The protein comprises three-four domains: a small N-terminal helical domain (absent in bacterial PK), a beta/alpha-barrel domain, a beta-barrel domain (inserted within the beta/alpha-barrel domain), and a 3-layer alpha/beta/alpha sandwich domain. This entry represents the two barrel domains, the beta/alpha-barrel, and the beta-barrel inserted within it.; GO: 0000287 magnesium ion binding, 0004743 pyruvate kinase activity, 0030955 potassium ion binding, 0006096 glycolysis; PDB: 3HQQ_W 3KTX_A 3E0V_A 3QV6_D 3QV7_D 1PKL_D 3HQP_A 3QV8_D 3HQO_C 3IS4_B ....
Probab=20.44 E-value=3.5e+02 Score=20.24 Aligned_cols=25 Identities=28% Similarity=0.403 Sum_probs=17.8
Q ss_pred ceeEEEeeCCCCCCHHHHHhHHHHH
Q psy17366 22 KTVMVATVSPAADNYEETLSTLRYA 46 (91)
Q Consensus 22 ~t~~I~~vsp~~~~~~ETlsTL~fa 46 (91)
+|-+|||+.|+..+.+.-..-++-|
T Consensus 3 kTKIi~TiGPas~~~e~l~~li~aG 27 (348)
T PF00224_consen 3 KTKIIATIGPASESVEVLRKLIEAG 27 (348)
T ss_dssp SSEEEEEESTTTCSHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhc
Confidence 6889999999987766444444444
No 71
>TIGR03761 ICE_PFL4669 integrating conjugative element protein, PFL_4669 family. Members of this protein family, such as PFL4669, are found in integrating conjugative elements (ICE) of the PFGI-1 class as in Pseudomonas fluorescens.
Probab=20.13 E-value=2.2e+02 Score=20.21 Aligned_cols=18 Identities=17% Similarity=0.215 Sum_probs=13.1
Q ss_pred HHHHHhHhhhhhccceec
Q psy17366 42 TLRYADRAKRIVNHAVVN 59 (91)
Q Consensus 42 TL~fa~rak~I~~~~~~n 59 (91)
-..|+++++.|.......
T Consensus 37 l~~f~s~~~~i~~~a~~D 54 (216)
T TIGR03761 37 MPGFISRLNRINQASEQD 54 (216)
T ss_pred cHHHHHHHHHHHHHHHcC
Confidence 358999999997765543
Done!