Query psy17366
Match_columns 91
No_of_seqs 108 out of 1048
Neff 7.2
Searched_HMMs 13730
Date Fri Aug 16 20:33:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17366.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17366hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1sdma_ c.37.1.9 (A:) Kinesin 99.8 3.2E-22 2.3E-26 145.5 3.4 78 3-84 275-352 (364)
2 d1goja_ c.37.1.9 (A:) Kinesin 99.8 2.6E-19 1.9E-23 129.2 5.0 59 3-63 282-340 (354)
3 d1x88a1 c.37.1.9 (A:18-362) Ki 99.7 4.2E-18 3.1E-22 122.4 4.9 51 3-55 295-345 (345)
4 d1f9va_ c.37.1.9 (A:) Kinesin 99.6 1.6E-17 1.2E-21 119.3 2.9 50 3-54 292-341 (342)
5 d1v8ka_ c.37.1.9 (A:) Kinesin 99.6 1.8E-17 1.3E-21 120.2 2.7 48 3-52 313-361 (362)
6 d1bg2a_ c.37.1.9 (A:) Kinesin 99.6 4.6E-17 3.3E-21 116.0 3.9 48 3-52 276-323 (323)
7 d1ry6a_ c.37.1.9 (A:) Kinesin 99.6 6.4E-17 4.7E-21 115.6 4.0 47 3-51 284-330 (330)
8 d2zfia1 c.37.1.9 (A:4-352) Kin 99.6 8.1E-17 5.9E-21 115.8 4.1 46 3-50 304-349 (349)
9 d2ncda_ c.37.1.9 (A:) Kinesin 99.6 9.8E-17 7.1E-21 116.4 4.5 47 3-51 321-367 (368)
10 d1gg2g_ a.137.3.1 (G:) Transdu 36.1 13 0.00094 18.6 2.3 23 67-89 2-24 (54)
11 d1vcsa1 a.47.2.1 (A:8-96) Vesi 31.7 11 0.00078 20.6 1.6 23 63-85 65-87 (89)
No 1
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}
Probab=99.84 E-value=3.2e-22 Score=145.48 Aligned_cols=78 Identities=29% Similarity=0.352 Sum_probs=65.9
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCchHHHHHHHHHHHHHHHHHHH
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLI 82 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~~~~i~~l~~ei~~L~~~L~ 82 (91)
-+|+||+||+ |+|||||+|+||+||||+..+++||++||+||+|||.|+|.|.+|..+. .+.+|+++++.|+.++.
T Consensus 275 R~SkLT~lL~--d~Lggns~t~~I~~isp~~~~~~eTl~TL~fa~~ak~i~n~p~~n~~~~--~~~~l~~~i~~l~~~~~ 350 (364)
T d1sdma_ 275 RNHKLTMLMS--DSLGGNAKTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSSK--EVARLKKLVSYWKEQAG 350 (364)
T ss_dssp GGCHHHHHTT--TTTTSSSEEEEEEEECCBGGGHHHHHHHHHHHHHHTTCCCCCCCCEECH--HHHHHHTTTTCC-----
T ss_pred hhhhhhHHHH--hhcCCCceEEEEEEeCCCcchHHHHHHHHHHHHHHhhcccCCcccCCHH--HHHHHHHHHHHHHHHHH
Confidence 4789999999 9999999999999999999999999999999999999999999998663 47788888888888875
Q ss_pred hc
Q psy17366 83 SA 84 (91)
Q Consensus 83 ~~ 84 (91)
..
T Consensus 351 ~~ 352 (364)
T d1sdma_ 351 RK 352 (364)
T ss_dssp --
T ss_pred hh
Confidence 44
No 2
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Probab=99.75 E-value=2.6e-19 Score=129.23 Aligned_cols=59 Identities=36% Similarity=0.409 Sum_probs=56.0
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhccceecCCch
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPN 63 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~~~~n~~~~ 63 (91)
-+|+||+||+ |+|||||+|+||+||+|+..+++||++||+||+|||+|+|.|.+|.+..
T Consensus 282 R~SkLT~lLk--d~Lgg~s~t~~I~~isp~~~~~~eTl~TL~fa~~~~~i~~~~~~n~~~~ 340 (354)
T d1goja_ 282 RDSKLTRILQ--ESLGGNSRTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELS 340 (354)
T ss_dssp GGCHHHHHTG--GGTTSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHHTCBCCCCCCSSSS
T ss_pred ccCHHHHHHH--HhcCCCCeEEEEEEECCCcccHHHHHHHHHHHHHHhccCccceEcCCCC
Confidence 4789999999 9999999999999999999999999999999999999999999998754
No 3
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}
Probab=99.70 E-value=4.2e-18 Score=122.37 Aligned_cols=51 Identities=43% Similarity=0.554 Sum_probs=48.7
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhcc
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNH 55 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~~ 55 (91)
-+|+||+||+ |+|||||+|+||+||+|+..+++||++||+||+|||+|+|+
T Consensus 295 R~SkLT~lL~--d~Lgg~s~t~~i~~vsp~~~~~~eTl~tL~fa~~~~~I~nk 345 (345)
T d1x88a1 295 RESKLTRILQ--DSLGGRTRTSIIATISPASLNLEETLSTLEYAHRAKNILNK 345 (345)
T ss_dssp GGSHHHHHTG--GGSSSSSEEEEEEEECCCGGGHHHHHHHHHHHHHHTTCCCC
T ss_pred ccCHHHHHhH--HhcCCCCcEEEEEEeCCchhhHHHHHHHHHHHHHhhhccCC
Confidence 4789999999 99999999999999999999999999999999999999985
No 4
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}
Probab=99.65 E-value=1.6e-17 Score=119.25 Aligned_cols=50 Identities=28% Similarity=0.337 Sum_probs=47.5
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhhhc
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVN 54 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I~~ 54 (91)
-+|+||+||+ |+|||||+|.||+||+|+..+++||++||+||+|||+|+.
T Consensus 292 R~SkLT~lL~--d~lgg~s~t~~I~~vsp~~~~~~eTl~TL~fa~r~~~i~~ 341 (342)
T d1f9va_ 292 RNSKLTYLLQ--YSLTGDSKTLMFVNISPSSSHINETLNSLRFASKVNSTRL 341 (342)
T ss_dssp GGSHHHHHHH--HHHSTTCEEEEEEEECCSGGGHHHHHHHHHHHHHHCCTTT
T ss_pred ccCHHHHHHH--HhcCCCceEEEEEEECCchhhHHHHHHHHHHHHHhhccee
Confidence 4789999999 9999999999999999999999999999999999999974
No 5
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}
Probab=99.64 E-value=1.8e-17 Score=120.15 Aligned_cols=48 Identities=38% Similarity=0.526 Sum_probs=45.5
Q ss_pred hhhhhhhhhccCCC-CCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhh
Q psy17366 3 GKHWILGLLRYWEN-PTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRI 52 (91)
Q Consensus 3 ~~~~ltkllr~qds-LgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I 52 (91)
-+|+||+||+ || |||||+|+||+||+|+..+++||++||+||+|||+|
T Consensus 313 R~SkLT~lLk--dsllGgns~t~~i~~vsp~~~~~~eTl~TL~fa~rak~I 361 (362)
T d1v8ka_ 313 RESKLTQVLR--DSFIGENSRTCMIAMISPGISSCEYTLNTLRYADRVKEL 361 (362)
T ss_dssp CCCHHHHHTT--HHHHSSSEEEEEEEEECCBGGGHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHhhh--hccCCCCccEEEEEEeCCChhhHHHHHHHHHHHHHHhcC
Confidence 3688999999 99 799999999999999999999999999999999987
No 6
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.63 E-value=4.6e-17 Score=116.03 Aligned_cols=48 Identities=31% Similarity=0.335 Sum_probs=46.0
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRI 52 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~I 52 (91)
-+|+||+||+ |+|||||+|+||+||+|+..+++||++||+||+|||+|
T Consensus 276 R~SkLT~lL~--d~L~g~~~t~~I~~isp~~~~~~eTl~tL~fa~r~k~I 323 (323)
T d1bg2a_ 276 RDSKMTRILQ--DSLGGNCRTTIVICCSPSSYNESETKSTLLFGQRAKTI 323 (323)
T ss_dssp GGSHHHHHGG--GTSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHTSCCC
T ss_pred ccCHHHHHHH--HhcCCCccEEEEEEECCcchhHHHHHHHHHHHHHhcCC
Confidence 4789999999 99999999999999999999999999999999999986
No 7
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}
Probab=99.63 E-value=6.4e-17 Score=115.62 Aligned_cols=47 Identities=34% Similarity=0.475 Sum_probs=44.7
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKR 51 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~ 51 (91)
-+|+||+||+ |+|||||+|.||+||+|+..+++||++||+||+|||.
T Consensus 284 R~SkLT~lL~--d~lggns~t~~I~~vsp~~~~~~eTl~tL~fa~rak~ 330 (330)
T d1ry6a_ 284 RDSELTKVLR--DIFVGKSKSIMIANISPTISCCEQTLNTLRYSSRVKN 330 (330)
T ss_dssp GGCHHHHHTG--GGGSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHCC
T ss_pred ccCHHHHHHH--HhcCCCCeEEEEEEECCchhhHHHHHHHHHHHHHhcC
Confidence 4789999999 9999999999999999999999999999999999984
No 8
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}
Probab=99.62 E-value=8.1e-17 Score=115.83 Aligned_cols=46 Identities=59% Similarity=0.675 Sum_probs=44.1
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAK 50 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak 50 (91)
-+|+||+||+ |+|||||+|+||+||+|+..+++||++||+||+|||
T Consensus 304 R~SkLT~lL~--d~Lgg~s~t~~I~~vsp~~~~~~eTl~TL~fa~rak 349 (349)
T d2zfia1 304 RDSVLTWLLR--ENLGGNSRTAMVAALSPADINYDETLSTLRYADRAK 349 (349)
T ss_dssp GGSHHHHHTG--GGSSTTCEEEEEEEECCBGGGHHHHHHHHHHHHHTC
T ss_pred cCCHHHHHHH--HhcCCCccEEEEEEeCCChhhHHHHHHHHHHHHhcC
Confidence 3789999999 999999999999999999999999999999999997
No 9
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.62 E-value=9.8e-17 Score=116.37 Aligned_cols=47 Identities=28% Similarity=0.354 Sum_probs=44.8
Q ss_pred hhhhhhhhhccCCCCCCCcceeEEEeeCCCCCCHHHHHhHHHHHhHhhh
Q psy17366 3 GKHWILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKR 51 (91)
Q Consensus 3 ~~~~ltkllr~qdsLgGns~t~~I~~vsp~~~~~~ETlsTL~fa~rak~ 51 (91)
-+|+||+||+ |+|||||+|.||+||+|+..+++||++||+||+|||+
T Consensus 321 R~SkLT~lL~--dsLggns~t~mI~~isp~~~~~~eTl~TL~fa~rak~ 367 (368)
T d2ncda_ 321 RNSKLTHLLM--PSLGGNSKTLMFINVSPFQDCFQESVKSLRFAASVNS 367 (368)
T ss_dssp GGSHHHHHHG--GGSSSSCEEEEEEEECCBGGGHHHHHHHHHHHHHHTT
T ss_pred cCCHHHHHHH--HhcCCCCeEEEEEEECCChhhHHHHHHHHHHHHHHhc
Confidence 4789999999 9999999999999999999999999999999999985
No 10
>d1gg2g_ a.137.3.1 (G:) Transducin (heterotrimeric G protein), gamma chain {Cow (Bos taurus) [TaxId: 9913]}
Probab=36.11 E-value=13 Score=18.55 Aligned_cols=23 Identities=30% Similarity=0.278 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHhcCCCcc
Q psy17366 67 IRELRQEVDKLKEMLISAGVPVS 89 (91)
Q Consensus 67 i~~l~~ei~~L~~~L~~~~~~~~ 89 (91)
+.+++.+++.|+.++.-.-..+|
T Consensus 2 i~q~rk~VeqLr~e~~~~RikvS 24 (54)
T d1gg2g_ 2 IAQARKLVEQLKMEANIDRIKVS 24 (54)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCHH
T ss_pred HHHHHHHHHHHHHHhCCchhhHH
Confidence 56788899999988876655544
No 11
>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=31.75 E-value=11 Score=20.63 Aligned_cols=23 Identities=22% Similarity=0.303 Sum_probs=16.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcC
Q psy17366 63 NARIIRELRQEVDKLKEMLISAG 85 (91)
Q Consensus 63 ~~~~i~~l~~ei~~L~~~L~~~~ 85 (91)
...-++.++.++..|+.++....
T Consensus 65 ~~~klr~Yk~dl~~lk~elk~a~ 87 (89)
T d1vcsa1 65 YSNRMRSYKQEMGKLETDFKRSR 87 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 34458888888888888877643
Done!