RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17366
(91 letters)
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 85.8 bits (213), Expect = 1e-21
Identities = 31/38 (81%), Positives = 34/38 (89%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59
KT M+AT+SPA NYEETLSTLRYADRAK+IVN AVVN
Sbjct: 319 KTAMIATISPADINYEETLSTLRYADRAKKIVNVAVVN 356
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 71.4 bits (176), Expect = 2e-16
Identities = 24/38 (63%), Positives = 30/38 (78%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59
KT+M+A VSP++ N EETLSTLR+A RAK I N +VN
Sbjct: 298 KTLMIANVSPSSSNLEETLSTLRFASRAKEIKNKPIVN 335
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 68.0 bits (167), Expect = 4e-15
Identities = 21/31 (67%), Positives = 26/31 (83%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
KT+M+A +SP+ NYEETLSTLR+A RAK I
Sbjct: 296 KTLMIANISPSDSNYEETLSTLRFASRAKNI 326
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 65.5 bits (160), Expect = 3e-14
Identities = 22/31 (70%), Positives = 25/31 (80%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
KTVM A + PA NY+ETLSTLRYA+RAK I
Sbjct: 303 KTVMCANIGPADYNYDETLSTLRYANRAKNI 333
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 59.2 bits (144), Expect = 6e-12
Identities = 19/31 (61%), Positives = 27/31 (87%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
KTVM+A +SP++ +YEET +TL+YA+RAK I
Sbjct: 308 KTVMIANISPSSSHYEETHNTLKYANRAKNI 338
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 58.8 bits (143), Expect = 7e-12
Identities = 19/29 (65%), Positives = 27/29 (93%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
KT+M+A +SP+++NY+ETLSTLR+A RAK
Sbjct: 300 KTLMIANISPSSENYDETLSTLRFASRAK 328
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 58.4 bits (142), Expect = 1e-11
Identities = 24/40 (60%), Positives = 29/40 (72%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNED 61
KT ++AT+SPA+ N EETLSTL YA RAK I N VN+
Sbjct: 313 KTSIIATISPASINLEETLSTLEYAHRAKNIKNKPEVNQK 352
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 58.4 bits (141), Expect = 1e-11
Identities = 30/63 (47%), Positives = 38/63 (60%), Gaps = 6/63 (9%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE----DPN--ARIIRELRQEVD 75
K MV +SP+ ET STLR+A RAK I N AVVNE D N +IR+LR E+
Sbjct: 404 KLAMVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNEVMQDDVNFLREVIRQLRDELQ 463
Query: 76 KLK 78
++K
Sbjct: 464 RVK 466
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 56.2 bits (136), Expect = 7e-11
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
T+M+A VSPA N+EETL+TL+YA+RA+ I
Sbjct: 310 HTLMIACVSPADSNFEETLNTLKYANRARNI 340
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 55.1 bits (133), Expect = 2e-10
Identities = 17/38 (44%), Positives = 29/38 (76%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59
T ++ T+SP+++++EET++TL++A RAK I N VN
Sbjct: 306 NTRVICTISPSSNSFEETINTLKFASRAKSIKNKIQVN 343
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 53.4 bits (129), Expect = 7e-10
Identities = 20/29 (68%), Positives = 25/29 (86%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
KTVM+AT+SP+A + E TL+TLRYADR K
Sbjct: 294 KTVMIATISPSASSCEHTLNTLRYADRVK 322
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 50.3 bits (121), Expect = 8e-09
Identities = 13/33 (39%), Positives = 19/33 (57%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVN 54
KT+M +SP N ETL +LR+A R + +
Sbjct: 296 KTLMFVNISPLESNLSETLCSLRFASRVRSVEL 328
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 45.8 bits (109), Expect = 3e-07
Identities = 15/31 (48%), Positives = 26/31 (83%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
+T ++ T+SPA+ + EETL+TL++A RAK++
Sbjct: 291 RTAIICTISPASSHVEETLNTLKFASRAKKV 321
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 42.1 bits (99), Expect = 7e-06
Identities = 16/29 (55%), Positives = 20/29 (68%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
KTVM+AT+ N +ETLSTLR+A R
Sbjct: 306 KTVMLATIWVEPSNLDETLSTLRFAQRVA 334
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 40.9 bits (96), Expect = 2e-05
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
KT ++A VSP++ + ETLSTL++A RAK I
Sbjct: 307 KTTIIANVSPSSKCFGETLSTLKFAQRAKLI 337
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 38.4 bits (90), Expect = 1e-04
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
+T ++ SP++ N ETLSTLR+ RAK I
Sbjct: 295 RTTLIICCSPSSYNESETLSTLRFGARAKTI 325
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 35.8 bits (83), Expect = 0.001
Identities = 10/29 (34%), Positives = 19/29 (65%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
K M+ V+P A +Y+ETL ++++ A+
Sbjct: 317 KARMIVNVNPCASDYDETLHVMKFSAIAQ 345
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 31.7 bits (72), Expect = 0.026
Identities = 13/28 (46%), Positives = 20/28 (71%)
Query: 23 TVMVATVSPAADNYEETLSTLRYADRAK 50
+MVA ++P Y++TLSTL +A R+K
Sbjct: 292 CIMVANIAPERSFYQDTLSTLNFASRSK 319
>gnl|CDD|223545 COG0469, PykF, Pyruvate kinase [Carbohydrate transport and
metabolism].
Length = 477
Score = 29.8 bits (68), Expect = 0.14
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 14/66 (21%)
Query: 19 MLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN------EDPNARI--IREL 70
M+ KT +VAT+ PA ++ E L + +N +N E+ RI +RE
Sbjct: 3 MMRKTKIVATLGPATESEE----MLE--KLIEAGMNVVRLNFSHGDHEEHKKRIDNVREA 56
Query: 71 RQEVDK 76
+++ +
Sbjct: 57 AEKLGR 62
>gnl|CDD|233342 TIGR01285, nifN, nitrogenase molybdenum-iron cofactor biosynthesis
protein NifN. This protein forms a complex with NifE,
and appears as a NifEN in some species. NifEN is a
required for producing the molybdenum-iron cofactor of
molybdenum-requiring nitrogenases. NifN is closely
related to the nitrogenase molybdenum-iron protein beta
chain NifK. This model describes most examples of NifN
but excludes some cases, such as the putative NifN of
Chlorobium tepidum, for which a separate model may be
created [Biosynthesis of cofactors, prosthetic groups,
and carriers, Other, Central intermediary metabolism,
Nitrogen fixation].
Length = 432
Score = 29.0 bits (65), Expect = 0.25
Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 10/87 (11%)
Query: 10 LLRYWENPTMLHKTVM--VATVSPAADNYEETLSTLRYADRAK-RIVNHAV--VNEDPNA 64
+R++ P L T M V+T+ ++ EE + TL R K + + + E
Sbjct: 51 FVRHFREPIPLQTTAMDEVSTILGGDEHIEEAIDTLC--QRNKPKAIGLLSTGLTETRGE 108
Query: 65 RIIRELRQEVDKLKEMLISAGVPVSWV 91
I R +RQ +K + G V V
Sbjct: 109 DIARVVRQFREKHPQH---KGTAVVTV 132
>gnl|CDD|235619 PRK05826, PRK05826, pyruvate kinase; Provisional.
Length = 465
Score = 29.0 bits (66), Expect = 0.30
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 19 MLHKTVMVATVSPAADNYE 37
ML +T +VAT+ PA+D+ E
Sbjct: 2 MLRRTKIVATLGPASDSPE 20
>gnl|CDD|215507 PLN02939, PLN02939, transferase, transferring glycosyl groups.
Length = 977
Score = 27.6 bits (61), Expect = 0.89
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 6/49 (12%)
Query: 38 ETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLISAGV 86
E L L DRA V A + D N ++LR +VDKL+ L A V
Sbjct: 303 ENLQDL--LDRATNQVEKAALVLDQN----QDLRDKVDKLEASLKEANV 345
>gnl|CDD|215250 PLN02456, PLN02456, citrate synthase.
Length = 455
Score = 27.3 bits (61), Expect = 1.0
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
Query: 55 HAVV-NEDPNARIIRELRQEVDKLK 78
H V N DP A+ IRE EV K
Sbjct: 333 HRVYKNYDPRAKCIREFALEVFKHV 357
>gnl|CDD|232945 TIGR00376, TIGR00376, DNA helicase, putative. The gene product may
represent a DNA helicase. Eukaryotic members of this
family have been characterized as binding certain
single-stranded G-rich DNA sequences (GGGGT and GGGCT).
A number of related proteins are characterized as
helicases [DNA metabolism, DNA replication,
recombination, and repair].
Length = 637
Score = 27.1 bits (60), Expect = 1.1
Identities = 13/59 (22%), Positives = 25/59 (42%), Gaps = 11/59 (18%)
Query: 32 AADNYEETLSTL-----------RYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKE 79
A DN E L+ R K+ ++ P +I+ ++R+++D+L E
Sbjct: 213 AVDNLLERLALCDQKIVRLGHPARLLKSNKQHSLDYLIENHPKYQIVADIREKIDELIE 271
>gnl|CDD|220450 pfam09869, DUF2096, Uncharacterized protein conserved in archaea
(DUF2096). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 169
Score = 26.6 bits (59), Expect = 1.8
Identities = 12/47 (25%), Positives = 27/47 (57%), Gaps = 3/47 (6%)
Query: 37 EETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLIS 83
EE + LR A + I+N +++ N +R+ +E+++++E+L
Sbjct: 24 EEVIEKLRLA---RAILNFYLLDPHANFEELRDAEKELNRVQEILFG 67
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 26.6 bits (59), Expect = 2.0
Identities = 11/46 (23%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 37 EETLSTLRYADR---AKRIVNHAVVNEDPNARIIRELRQEVDKLKE 79
EE +Y +R A+R + N + ++ EL ++++KL+
Sbjct: 162 EEAAGVSKYKERKEEAERKLERTEENLERLEDLLEELEKQLEKLER 207
>gnl|CDD|236370 PRK09064, PRK09064, 5-aminolevulinate synthase; Validated.
Length = 407
Score = 26.4 bits (59), Expect = 2.1
Identities = 12/22 (54%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Query: 68 RELRQE-VDKLKEMLISAGVPV 88
RE QE KLK L +AG+PV
Sbjct: 302 RERHQERAAKLKAALDAAGIPV 323
>gnl|CDD|223408 COG0331, FabD, (acyl-carrier-protein) S-malonyltransferase [Lipid
metabolism].
Length = 310
Score = 26.1 bits (58), Expect = 2.3
Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 13/71 (18%)
Query: 21 HKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEM 80
H +M PAAD E L +R++D ++++ + IREL L +
Sbjct: 202 HSPLMK----PAADELAEALEKVRFSDPLVPVISNVDAKPVLDGEEIREL------LAKQ 251
Query: 81 LISAGVPVSWV 91
L S PV W
Sbjct: 252 LTS---PVRWT 259
>gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional.
Length = 200
Score = 26.2 bits (57), Expect = 2.5
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 49 AKRIVNHAVVNEDPNARIIRELRQEVDKLK 78
A IV H VVN+ P R I E+ + VD L+
Sbjct: 133 ANGIVRHQVVNDLPLGRNIDEMLRMVDALQ 162
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 26.0 bits (57), Expect = 3.1
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 14/63 (22%)
Query: 15 ENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEV 74
+LHK V V + L DR K I V E+ N + +++ R +
Sbjct: 75 YGNQLLHKEVDV--------------TKLDGNDRQKFIDMVFKVAEEDNEKFLKKFRNRI 120
Query: 75 DKL 77
D++
Sbjct: 121 DRV 123
>gnl|CDD|240354 PTZ00310, PTZ00310, AMP deaminase; Provisional.
Length = 1453
Score = 25.9 bits (57), Expect = 3.3
Identities = 12/64 (18%), Positives = 24/64 (37%), Gaps = 9/64 (14%)
Query: 19 MLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLK 78
+ +TV+++T A + + T R ++ R+ R V++L
Sbjct: 1310 VRAETVLLSTHDQAMEVMLREMETTNERIVHLRA--------QVDSLR-RQQRSLVERLT 1360
Query: 79 EMLI 82
E I
Sbjct: 1361 EEGI 1364
>gnl|CDD|216071 pfam00704, Glyco_hydro_18, Glycosyl hydrolases family 18.
Length = 325
Score = 25.5 bits (56), Expect = 3.9
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 61 DPNARIIRELRQEVDKLKE--MLISAGVP 87
D +++ELR + K + L+SA VP
Sbjct: 131 DNYTALLKELRAALKKEAKAGYLLSAAVP 159
>gnl|CDD|180164 PRK05614, gltA, type II citrate synthase; Reviewed.
Length = 419
Score = 25.6 bits (57), Expect = 4.3
Identities = 10/18 (55%), Positives = 12/18 (66%)
Query: 59 NEDPNARIIRELRQEVDK 76
N DP A+I+RE EV K
Sbjct: 313 NYDPRAKIMRETCHEVLK 330
>gnl|CDD|216687 pfam01763, Herpes_UL6, Herpesvirus UL6 like. This family consists
of various proteins from the herpesviridae that are
similar to herpes simplex virus type I UL6 virion
protein. UL6 is essential for cleavage and packaging of
the viral genome.
Length = 556
Score = 25.3 bits (56), Expect = 4.7
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 7/44 (15%)
Query: 40 LSTLRYADRAKRIVNHAVVNE---DPNARIIRELRQEVDKLKEM 80
L R+ D KRIV D R+++ L L EM
Sbjct: 264 LVGSRHEDGYKRIVEKLEKESKASDAKKRLVKLLI----NLSEM 303
>gnl|CDD|184420 PRK13960, PRK13960, phosphoribosylaminoimidazole-succinocarboxamide
synthase; Provisional.
Length = 367
Score = 25.4 bits (56), Expect = 4.9
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Query: 10 LLRYWENP-TMLHKTVMVATVSPAADNY--EETLSTLR--YADRAKRIVNHAVV-NEDPN 63
LL ++ +P +L+K M + A DN E + + Y A++I +V + +P
Sbjct: 293 LLNHFPDPDILLNKDRMPEREALARDNALPLEAMMDVSRTYTGIAEKITGAKIVLSANPK 352
Query: 64 ARIIRELRQE 73
A II LR+E
Sbjct: 353 AEIIDILREE 362
>gnl|CDD|213771 TIGR03076, near_not_gcvH, Chlamydial GcvH-like protein upstream
region protein. The H protein (GcvH) of the glycine
cleavage system shuttles the methylamine group of
glycine from the P protein to the T protein. Most
Chlamydia but lack the P and T proteins, and have a
single homolog of GcvH that appears deeply split from
canonical GcvH in molecular phylogenetic trees. The
protein family modeled here is observed so far only in
the Chlamydiae, always as part of a two-gene operon,
upstream of the homolog of GcvH. Its function is unknown
[Unknown function, General].
Length = 686
Score = 25.6 bits (56), Expect = 5.1
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Query: 47 DRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLISAG 85
++ ++ DP RI+ EL Q+ K +E+ +SAG
Sbjct: 449 EKIHSFTRKEILRADPG-RILSELAQQEQKSEEVFLSAG 486
>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated.
Length = 540
Score = 25.1 bits (55), Expect = 5.8
Identities = 14/62 (22%), Positives = 20/62 (32%), Gaps = 5/62 (8%)
Query: 25 MVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLISA 84
+P AD L A + ++ ELR VD+L L +
Sbjct: 1 TPHDAAPRADTLASLLDAHARARPD-----AVALIDEDRPLSRAELRALVDRLAAWLAAQ 55
Query: 85 GV 86
GV
Sbjct: 56 GV 57
>gnl|CDD|227314 COG4981, COG4981, Enoyl reductase domain of yeast-type FAS1 [Lipid
metabolism].
Length = 717
Score = 25.2 bits (55), Expect = 6.0
Identities = 7/26 (26%), Positives = 15/26 (57%)
Query: 62 PNARIIRELRQEVDKLKEMLISAGVP 87
R++++ R + ++ISAG+P
Sbjct: 109 GGKRLVQKARASGAPIDGVVISAGIP 134
>gnl|CDD|99860 cd06107, EcCS_AthCS-per_like, Escherichia coli (Ec) citrate
synthase (CS) gltA and Arabidopsis thaliana (Ath)
peroxisomal (Per) CS_like. CS catalyzes the condensation
of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to
form citrate and coenzyme A (CoA), the first step in the
citric acid cycle (TCA or Krebs cycle). The overall CS
reaction is thought to proceed through three partial
reactions and involves both closed and open
conformational forms of the enzyme: a) the carbanion or
equivalent is generated from AcCoA by base abstraction
of a proton, b) the nucleophilic attack of this
carbanion on OAA to generate citryl-CoA, and c) the
hydrolysis of citryl-CoA to produce citrate and CoA.
There are two types of CSs: type I CS and type II CSs.
Type I CSs are found in eukarya, gram-positive bacteria,
archaea, and in some gram-negative bacteria and are
homodimers with both subunits participating in the
active site. Type II CSs are unique to gram-negative
bacteria and are homohexamers of identical subunits
(approximated as a trimer of dimers). Some type II CSs,
including EcCS, are strongly and specifically inhibited
by NADH through an allosteric mechanism. Included in
this group is an NADH-insensitive type II Acetobacter
acetii CS which has retained many of the residues used
by EcCS for NADH binding. C. aurantiacus is a
gram-negative thermophilic green gliding bacterium; its
CS belonging to this group may be a type I CS. It is
not inhibited by NADH or 2-oxoglutarate and is inhibited
by ATP. Both gram-positive and gram-negative bacteria
are found in this group. This group also contains three
Arabidopsis peroxisomal CS proteins, CYS-1, -2, and -3
which participate in the glyoxylate cycle. AthCYS1, in
addition to a peroxisomal targeting sequence, has a
predicted secretory signal peptide; it may be targeted
to both the secretory pathway and the peroxisomes and
perhaps is located in the extracellular matrix. AthCSY1
is expressed only in siliques and specifically in
developing seeds. AthCSY2 and 3 are active during seed
germination and seedling development and are thought to
participate in the beta-oxidation of fatty acids.
Length = 382
Score = 25.1 bits (55), Expect = 7.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Query: 59 NEDPNARIIRELRQEVDKLKEM 80
N DP A++IRE+ EV E
Sbjct: 278 NYDPRAKVIREILHEVLTEVEK 299
>gnl|CDD|234415 TIGR03955, rSAM_HydG, [FeFe] hydrogenase H-cluster radical SAM
maturase HydG. This model describes the radical SAM
protein HydG. It is part of an enzyme metallocenter
maturation system, working together with GTP-binding
protein HydF and another radical SAM enzyme, HydE, in
H-cluster maturation in [FeFe] hydrogenases [Protein
fate, Protein modification and repair].
Length = 471
Score = 24.7 bits (54), Expect = 7.6
Identities = 9/17 (52%), Positives = 11/17 (64%)
Query: 35 NYEETLSTLRYADRAKR 51
N+EE L TL YA+ K
Sbjct: 13 NHEEILETLAYAEENKD 29
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 24.7 bits (54), Expect = 7.8
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 6/48 (12%)
Query: 43 LRYADRAK-RIVNHAVVNEDPNARIIRELRQEVDKLKEMLISAGVPVS 89
L YA++ K + +E + L +EVDKL+E L A V +S
Sbjct: 328 LEYAEKIKEELDQLDDSDES-----LEALEEEVDKLEEELDKAAVALS 370
>gnl|CDD|220307 pfam09601, DUF2459, Protein of unknown function (DUF2459). This
conserved hypothetical protein of unknown function is
found in several Proteobacteria. Its function is unknown
and its genome context is not well-conserved. It is
found amid urease genes in at least one species.
Length = 172
Score = 24.6 bits (54), Expect = 8.3
Identities = 11/54 (20%), Positives = 19/54 (35%)
Query: 14 WENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARII 67
+ ++LH V+ +P D LS +YA I + D +
Sbjct: 71 TGDASVLHVVVLGRPPAPGDDVRRLRLSEAQYAALVAFIRASFARDPDGQPIPV 124
>gnl|CDD|237722 PRK14476, PRK14476, nitrogenase molybdenum-cofactor biosynthesis
protein NifN; Provisional.
Length = 455
Score = 24.8 bits (55), Expect = 8.5
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 4/43 (9%)
Query: 10 LLRYWENPTMLHKTVM--VATVSPAADNYEETLSTLRYADRAK 50
L+R++ P L T M V T+ +N EE + + +AK
Sbjct: 52 LVRHFREPIPLQTTAMDEVTTILGGDENVEEAILNIC--KKAK 92
>gnl|CDD|220639 pfam10231, DUF2315, Uncharacterized conserved protein (DUF2315).
This is a family of small conserved proteins found from
worms to humans. The function is not known.
Length = 127
Score = 24.4 bits (53), Expect = 9.3
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 52 IVNHAVVNEDPNARIIRELRQEV 74
IV H NE P R +R LRQE
Sbjct: 17 IVLHIPENETPLERKLRLLRQET 39
>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA
ligase (FACL). Fatty acyl-CoA ligases catalyze the
ATP-dependent activation of fatty acids in a two-step
reaction. The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. This is a
required step before free fatty acids can participate
in most catabolic and anabolic reactions.
Length = 448
Score = 24.5 bits (54), Expect = 10.0
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 68 RELRQEVDKLKEMLISAGV 86
++L QEVD L E L + GV
Sbjct: 6 QQLWQEVDLLAEQLRALGV 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.132 0.397
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,811,290
Number of extensions: 393816
Number of successful extensions: 810
Number of sequences better than 10.0: 1
Number of HSP's gapped: 810
Number of HSP's successfully gapped: 76
Length of query: 91
Length of database: 10,937,602
Length adjustment: 58
Effective length of query: 33
Effective length of database: 8,365,070
Effective search space: 276047310
Effective search space used: 276047310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)