RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17366
(91 letters)
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 111 bits (280), Expect = 3e-31
Identities = 13/60 (21%), Positives = 29/60 (48%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEML 81
++++A ++P Y +T+S L +A R+K ++N NE + ++ +L
Sbjct: 317 HSILIANIAPERRFYLDTVSALNFAARSKEVINRPFTNESLQPHALGPVKLSQKELLGPP 376
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 109 bits (275), Expect = 1e-30
Identities = 31/50 (62%), Positives = 37/50 (74%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELR 71
KTVMVA V PA+ N EETL+TLRYA+RAK I N VNEDP ++RE +
Sbjct: 323 KTVMVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNEDPKDALLREFQ 372
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 107 bits (270), Expect = 6e-30
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKE 79
+T ++ SP++ N ETLSTLR+ RAK I N A VN + + EL+Q + K K
Sbjct: 300 RTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELSP---AELKQMLAKAKT 354
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 105 bits (264), Expect = 5e-29
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNAR-IIRELRQEVDKLKEM 80
+T +V SPA+ N ET STL + RAK + N VNE+ A R +E +K +
Sbjct: 303 RTTIVICCSPASFNESETKSTLDFGRRAKTVKNVVCVNEELTAEEWKRRYEKEKEKNARL 362
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 104 bits (261), Expect = 1e-28
Identities = 26/42 (61%), Positives = 31/42 (73%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPN 63
+T MVA +SPA NY+ETLSTLRYADRAK+I N VN +
Sbjct: 324 RTAMVAALSPADINYDETLSTLRYADRAKQIRNTVSVNHHHH 365
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 104 bits (261), Expect = 2e-28
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKE 79
KT M+A +SP +Y+ETLSTLRYAD+AKRI AVVN+ E ++ +
Sbjct: 385 KTAMIACISPT--DYDETLSTLRYADQAKRIRTRAVVNQVDGVSAA-ERDAQIPSIVH 439
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 101 bits (254), Expect = 1e-27
Identities = 28/46 (60%), Positives = 35/46 (76%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARII 67
KT+M A +SPA+ NY+ET+STLRYADRAK+I N +NEDP I
Sbjct: 305 KTLMCANISPASTNYDETMSTLRYADRAKQIKNKPRINEDPKDAQI 350
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 99.6 bits (249), Expect = 6e-27
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQE 73
KT ++ T++P +++ETL+ L++A AK + N VNE +
Sbjct: 300 KTRIICTITPV--SFDETLTALQFASTAKYMKNTPYVNEVSTDELEHHHHHH 349
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 96.9 bits (242), Expect = 8e-26
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEML 81
KT+M +SPA N +ET ++L YA R + IVN N + + L++ V KE
Sbjct: 297 KTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLKKLVSYWKEQA 354
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 89.7 bits (223), Expect = 3e-25
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPN-ARIIRELRQEVDKLKEM 80
+T +V SP+ N ET STL + RAK I N VN + ++ +E +K K +
Sbjct: 42 RTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTAEEWKKKYEKEKEKNKAL 101
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 86.6 bits (215), Expect = 3e-24
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKE 79
+T +V SP+ N ET STL + RAK I N VN + A E +++ +K KE
Sbjct: 46 RTTIVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNLELTA---EEWKKKYEKEKE 100
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 91.1 bits (227), Expect = 1e-23
Identities = 22/42 (52%), Positives = 27/42 (64%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPN 63
KT ++AT+SP + EETLSTL YA RAK I N VN+
Sbjct: 331 KTSIIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQKLT 372
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 89.9 bits (224), Expect = 3e-23
Identities = 23/39 (58%), Positives = 30/39 (76%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNE 60
+T ++AT+SPA+ N EETLSTL YA RAK I+N VN+
Sbjct: 320 RTSIIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 87.7 bits (218), Expect = 2e-22
Identities = 15/57 (26%), Positives = 26/57 (45%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLK 78
K++M+A +SP E+TL+TLRY+ R K N + + ++
Sbjct: 301 KSIMIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGKPIPNPLLGLDSSRTGHHH 357
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 86.1 bits (214), Expect = 6e-22
Identities = 28/34 (82%), Positives = 30/34 (88%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNH 55
KT MVATVSPAADNY+ETLSTLRYADRAK +H
Sbjct: 320 KTAMVATVSPAADNYDETLSTLRYADRAKHHHHH 353
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 85.7 bits (213), Expect = 9e-22
Identities = 12/38 (31%), Positives = 17/38 (44%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59
+A +SP + ETLSTLR+ AK +
Sbjct: 305 YLTFLACISPHQCDLSETLSTLRFGTSAKAAALEHHHH 342
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 82.7 bits (205), Expect = 1e-20
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVN 59
+T M+A +SP + E TL+TLRYADR K + +H +
Sbjct: 372 RTCMIAMISPGISSCEYTLNTLRYADRVKELSHHHHHH 409
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 80.0 bits (198), Expect = 2e-19
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 56
+T M+AT+SP + E TL+TLRYADR K + H+
Sbjct: 352 RTCMIATISPGISSCEYTLNTLRYADRVKELSPHS 386
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 76.5 bits (189), Expect = 3e-18
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI-VNHAVVNEDPNARIIRELRQE 73
KT+M VSP D ++E++ +LR+A + A N N + Q
Sbjct: 352 KTLMFINVSPFQDCFQESVKSLRFAASVNSCKMTKAKRNRYLNNSVANSSTQS 404
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 76.1 bits (188), Expect = 3e-18
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
+T+M+A VSP++ Y++T +TL+YA+RAK I
Sbjct: 325 QTIMIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 73.5 bits (181), Expect = 3e-17
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
V+V + A EETLS+LR+A R K +
Sbjct: 328 NMVLVTNIYGEAAQLEETLSSLRFASRMKLV 358
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 72.6 bits (179), Expect = 5e-17
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
+T +V SP++ N ET STL + RAK I
Sbjct: 295 RTTIVICCSPSSYNESETKSTLLFGQRAKTI 325
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 72.2 bits (178), Expect = 8e-17
Identities = 17/29 (58%), Positives = 25/29 (86%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
KTVM+A VSP++ +++ETL+TL YA RA+
Sbjct: 316 KTVMIACVSPSSSDFDETLNTLNYASRAQ 344
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 68.4 bits (168), Expect = 2e-15
Identities = 10/35 (28%), Positives = 18/35 (51%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 56
KT+M + P ++ ETL++LR+A +
Sbjct: 314 KTLMFVNIPPDPNHISETLNSLRFASKVNSTKIAK 348
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 67.6 bits (166), Expect = 3e-15
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 56
KT+M +SP++ + ETL++LR+A + +
Sbjct: 311 KTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 345
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 66.1 bits (162), Expect = 1e-14
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHA 56
KT+M +SP++ + ETL++LR+A + +
Sbjct: 367 KTLMFVNISPSSSHINETLNSLRFASKVNSTRLVS 401
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 64.2 bits (157), Expect = 6e-14
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKR 51
K +M +SP +N E+L++LR+A + +
Sbjct: 346 KMLMFVNISPLEENVSESLNSLRFASKVNQ 375
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 64.1 bits (157), Expect = 6e-14
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
KT+MV VSP N ETL +L++A+R + +
Sbjct: 298 KTLMVVQVSPVEKNTSETLYSLKFAERVRSV 328
>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A
{Staphylococcus aureus subsp} PDB: 3t07_A*
Length = 606
Score = 28.7 bits (65), Expect = 0.23
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 28/77 (36%)
Query: 15 ENPTMLHKTVMVATVSPAADNYEETLSTLR---------------YADRAKRIVNHAVVN 59
M+ KT +V T+ PA+++ EE + L + + RI
Sbjct: 17 RGSHMMRKTKIVCTIGPASES-EEMIEKLINAGMNVARLNFSHGSHEEHKGRIDT----- 70
Query: 60 EDPNARIIRELRQEVDK 76
IR++ + +DK
Sbjct: 71 -------IRKVAKRLDK 80
>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE
consortium, SGC, transferase; 2.70A {Plasmodium
falciparum 3D7}
Length = 520
Score = 27.9 bits (63), Expect = 0.35
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 6 WILGLLRYWENPTMLHKTVMVATVSPAADNYEETLSTLRYA 46
+ +L KT +V T+ PA + ETL L A
Sbjct: 31 TLRQILEPNNVNLRSKKTHIVCTLGPACKS-VETLVKLIDA 70
>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis,
magnesium, transferase, structural genomics, STRU
genomics consortium, SGC; 2.21A {Toxoplasma gondii}
PDB: 3eoe_A
Length = 511
Score = 27.1 bits (61), Expect = 0.77
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 15 ENPTMLHKTVMVATVSPAADNYEETLSTLRYA 46
E H+T +V T+ PA N +TL + A
Sbjct: 30 EEDWTAHRTRIVCTMGPACWN-VDTLVKMIDA 60
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 27.1 bits (59), Expect = 0.80
Identities = 20/98 (20%), Positives = 30/98 (30%), Gaps = 25/98 (25%)
Query: 6 WILGLLRYWENPTMLHKTVMVATVSPAADNYE------------ETLSTLRYADRAKRIV 53
W L L E V NY+ ++ T Y ++ R+
Sbjct: 69 WTL--LSKQEE------MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY 120
Query: 54 NHAVVNEDPNARIIRELRQEVDKLKEMLISAGVPVSWV 91
N V N + R Q KL++ L+ P V
Sbjct: 121 NDNQVFAKYN--VSRL--QPYLKLRQALLELR-PAKNV 153
>3gr4_A Pyruvate kinase isozymes M1/M2; activator, acetylation,
allosteric enzyme, alternative splicing, glycolysis,
magnesium, metal-binding; HET: FBP TLA DYY ADP; 1.60A
{Homo sapiens} PDB: 3gqy_A* 3h6o_A* 3me3_A* 1zjh_A
3g2g_A 1t5a_A* 3bjt_A 3bjf_A* 1f3x_A 3n25_A 1f3w_A
1a49_A* 1a5u_A* 1aqf_A* 1pkm_A 2g50_A* 1pkn_A 2vgb_A*
2vgf_A* 2vgg_A* ...
Length = 550
Score = 26.6 bits (59), Expect = 1.2
Identities = 7/33 (21%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 5 HWILGLLRYWENPTMLHKTVMVATVSPAADNYE 37
+ L P T ++ T+ PA+ + E
Sbjct: 47 EHMCRL-DIDSPPITARNTGIICTIGPASRSVE 78
>4ed9_A CAIB/BAIF family protein; ssgcid, NIH, niaid, SBRI, UW, emerald
biostructures, structu genomics; HET: NHE; 1.95A
{Brucella suis}
Length = 385
Score = 26.3 bits (59), Expect = 1.4
Identities = 12/46 (26%), Positives = 18/46 (39%), Gaps = 3/46 (6%)
Query: 44 RYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLISAGVPVS 89
R+A + R+ N A + R + R + L L GVP
Sbjct: 280 RFATNSARVANRAALTALLEERTKQWKRDD---LLAELAKIGVPAG 322
>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus
stearothermophilus}
Length = 587
Score = 25.6 bits (57), Expect = 2.2
Identities = 14/73 (19%), Positives = 26/73 (35%), Gaps = 28/73 (38%)
Query: 19 MLHKTVMVATVSPAADNYEETLSTLR---------------YADRAKRIVNHAVVNEDPN 63
M KT +V+T+ PA+++ + L L + + +RI
Sbjct: 1 MKRKTKIVSTIGPASES-VDKLVQLMEAGMNVARLNFSHGDHEEHGRRI----------- 48
Query: 64 ARIIRELRQEVDK 76
IRE + +
Sbjct: 49 -ANIREAAKRTGR 60
>3ubm_A COAT2, formyl-COA:oxalate COA-transferase; HET: COA; 1.99A
{Acetobacter aceti}
Length = 456
Score = 25.7 bits (57), Expect = 2.3
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 5/47 (10%)
Query: 44 RYADRAKRIVNHAVVNEDPNARIIRELRQE-VDKLKEMLISAGVPVS 89
+Y R + + A I + + + + L VP S
Sbjct: 333 KYNTAKARETHMFEI----FAAIEKAIADKTKYEAVAHLAKYRVPCS 375
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813,
glucosamine-6-phosphate deamina PSI, protein structure
initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Length = 342
Score = 25.6 bits (57), Expect = 2.3
Identities = 7/87 (8%), Positives = 23/87 (26%), Gaps = 28/87 (32%)
Query: 1 MVGKHWILGLL------------RYWENPTMLHKTVMVA------TVSPAADNYEETLST 42
+ ++ +L + + P + + + T + L
Sbjct: 68 LTISYYFERVLKIRTKAIPAGEVAFQKIPDLEERGLAFLFSRTGNT----TE----VLLA 119
Query: 43 LRYADRAKRIVNHAVVNEDPNARIIRE 69
+ + + E +R+ +E
Sbjct: 120 NDVL-KKRNHRTIGITIE-EESRLAKE 144
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure,
structural genomics, protein structure initiative; NMR
{Corynebacterium glutamicum} SCOP: a.4.1.19
Length = 97
Score = 25.1 bits (55), Expect = 2.4
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 27 ATVSPAADNYEETLSTLRY----ADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKE 79
A++ A++ TL+ + A IR+L++E +
Sbjct: 24 ASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRA 80
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics,
joint center structural genomics, JCSG, protein
structure initiative; HET: MSE; 1.50A {Listeria
monocytogenes}
Length = 373
Score = 25.6 bits (57), Expect = 2.4
Identities = 11/87 (12%), Positives = 23/87 (26%), Gaps = 28/87 (32%)
Query: 1 MVGKHWILGLL------------RYWENPTMLHKTVMVA------TVSPAADNYEETLST 42
K++I L Y H +++ + T+S
Sbjct: 66 QSAKYYIENLADVRITIEEPFNHLY-YEKLSSHLDLVIGISQSGQS----TS----TISA 116
Query: 43 LRYADRAKRIVNHAVVNEDPNARIIRE 69
L + + A+ + D + I
Sbjct: 117 LERVKKEASVPVVALTS-DVTSEIAEF 142
>2vjq_A Formyl-coenzyme A transferase; class III COA transferase; HET: EPE;
1.8A {Oxalobacter formigenes} PDB: 2vjp_A 2vjm_A*
2vjl_A* 2vjk_A* 1p5h_A 1p5r_A* 2vjn_A* 1t4c_A* 2vjo_A*
2vjm_B* 1vgr_A* 1t3z_A* 1t4c_B* 1vgq_A*
Length = 428
Score = 25.7 bits (57), Expect = 2.6
Identities = 7/46 (15%), Positives = 13/46 (28%), Gaps = 3/46 (6%)
Query: 44 RYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLISAGVPVS 89
Y R+ + + + + EV E G+P
Sbjct: 306 AYNTFEGRVDKLMDIFSFIETKFADKDKFEVT---EWAAQYGIPCG 348
>2h12_A Citrate synthase; acidophIle, acetic acid resistance, allostery,
transferase; HET: CMX; 1.85A {Acetobacter aceti}
Length = 436
Score = 25.3 bits (56), Expect = 3.4
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 59 NEDPNARIIRELRQEV 74
N DP A+I+++ EV
Sbjct: 318 NFDPRAKIMQQTCHEV 333
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 25.1 bits (55), Expect = 3.6
Identities = 7/25 (28%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 25 MVATVSPAADNYEE--TLSTLRYAD 47
++ VSP ++ E +TLR
Sbjct: 388 VIGAVSPPGGDFSEPVVQNTLRVVK 412
>3msu_A Citrate synthase; helix bundle, APHA-beta fold, csgid, center for
structural G of infectious diseases, transferase; HET:
OAA; 1.84A {Francisella tularensis}
Length = 427
Score = 25.3 bits (56), Expect = 3.6
Identities = 5/16 (31%), Positives = 10/16 (62%)
Query: 59 NEDPNARIIRELRQEV 74
N DP A +++ +E+
Sbjct: 315 NTDPRATAMKKNCEEI 330
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein,
null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Length = 45
Score = 23.9 bits (51), Expect = 3.7
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 64 ARIIRELRQEVDKLKEMLISA 84
++ E+++E+ K+KE +I A
Sbjct: 14 QELLEEVKKELQKVKEEIIEA 34
>3ln7_A Glutathione biosynthesis bifunctional protein GSH;
gamma-glutamylcysteine ligase domain, ATP-grAsp domain,
HYBR enzyme, ATP-binding; 3.20A {Pasteurella multocida}
Length = 757
Score = 25.3 bits (55), Expect = 3.8
Identities = 11/55 (20%), Positives = 22/55 (40%), Gaps = 2/55 (3%)
Query: 34 DNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEMLISAGVPV 88
+ + L+Y D + + N + + D I + + K++L AG V
Sbjct: 452 LDENDQFLCLKYGDHIEYVKNGNMTSHDSY--ISPLIMENKVVTKKVLQKAGFNV 504
>3vbi_A ANTD, galactoside O-acetyltransferase; anthrose, acylated sugar,
LEFT-handed beta helix, sugar N-AC transferase; HET: COA
0FX; 1.80A {Bacillus cereus} PDB: 3vbj_A* 3vbm_A*
3vbk_A* 3vbp_A* 3vbl_A* 3vbn_A*
Length = 205
Score = 25.0 bits (55), Expect = 4.0
Identities = 5/38 (13%), Positives = 15/38 (39%), Gaps = 9/38 (23%)
Query: 55 HAVVNED--PN-------ARIIRELRQEVDKLKEMLIS 83
++V E R I+ ++++ +L+ +
Sbjct: 164 MSMVKESLDDWYIYVGVPVRKIKARKRKIVELENEFLK 201
>3l96_A Citrate synthase; quaternary, hexamer, GRAM-negative bacteri
allostery, oxaloacetate, acetylcoa, NADH, allosteric
enzyme transferase; 1.90A {Escherichia coli} PDB:
3l97_A* 3l98_A* 3l99_A 1k3p_A 1nxe_A 1nxg_A* 1owb_A*
1owc_A 4e6y_A
Length = 426
Score = 24.9 bits (55), Expect = 4.1
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 59 NEDPNARIIRELRQEV 74
N DP A ++RE EV
Sbjct: 310 NYDPRATVMRETCHEV 325
>1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer;
HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP:
b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A
Length = 500
Score = 24.9 bits (55), Expect = 4.3
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 15 ENPTMLHKTVMVATVSPAADNYEETLSTLRYA 46
+ L +T ++ T+ P +N ETL LR A
Sbjct: 13 VAGSDLRRTSIIGTIGPKTNN-PETLVALRKA 43
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 25.1 bits (55), Expect = 4.7
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 25 MVATVSPAADNYEE--TLSTLRYAD 47
+V VSP + E T STLR
Sbjct: 380 IVGAVSPPGGDMSEPVTQSTLRIVG 404
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA
protein, structural genomics, joint center for
structural G JCSG; HET: MSE CIT; 1.80A {Clostridium
difficile}
Length = 352
Score = 24.8 bits (55), Expect = 4.8
Identities = 12/84 (14%), Positives = 23/84 (27%), Gaps = 22/84 (26%)
Query: 1 MVGKHWILGLL------------RYWENPTMLHKTVMVATVSPA---ADNYEETLSTLRY 45
+ + ++ LL T++V VS T + ++
Sbjct: 50 VQVQPYLQNLLDIDVVKMYPFMITEDTFKFDNENTLVVG-VSQGGSSYS----TYNAMKL 104
Query: 46 ADRAKRIVNHAVVNEDPNARIIRE 69
A K ++ NA I
Sbjct: 105 A-EDKGCKIASMAGC-KNALIDEI 126
>1aj8_A Citrate synthase; hyperthermostable, lyase; HET: COA CIT; 1.90A
{Pyrococcus furiosus} SCOP: a.103.1.1
Length = 371
Score = 24.8 bits (55), Expect = 4.9
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 55 HAV-VNEDPNARIIRELRQEV--DKLKEM 80
H V DP ARI ++ ++ KL E+
Sbjct: 257 HRVYKTYDPRARIFKKYASKLGDKKLFEI 285
>3hqn_D Pyruvate kinase, PK; TIM barrel, T-state enzyme, transferase,
allosteric enzyme, binding, glycolysis, magnesium,
metal-binding, NUCL binding; 2.00A {Leishmania
mexicana} PDB: 1pkl_A 3hqo_K* 3hqp_A* 3hqq_A* 3is4_A*
3ktx_A* 3qv6_A* 3qv7_D* 3qv8_D* 3e0w_A 3e0v_A 3pp7_A*
3qv9_A*
Length = 499
Score = 24.5 bits (54), Expect = 6.4
Identities = 5/32 (15%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 15 ENPTMLHKTVMVATVSPAADNYEETLSTLRYA 46
+ ++ T+ P+ + E L L +
Sbjct: 14 DPVANYRAARIICTIGPSTQS-VEALKGLIQS 44
>2ibp_A Citrate synthase; disulfide bond, homodimer, thermophilic, C
transferase; 1.60A {Pyrobaculum aerophilum}
Length = 409
Score = 24.5 bits (54), Expect = 6.7
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 59 NEDPNARIIRELRQEV 74
DP A+I +E ++
Sbjct: 294 AYDPRAKIFKEFSRDY 309
>1hjb_A Ccaat/enhancer binding protein beta; transcription/DNA,
protein-DNA complex; HET: DNA; 3.0A {Homo sapiens}
SCOP: h.1.3.1
Length = 87
Score = 23.8 bits (51), Expect = 8.0
Identities = 4/21 (19%), Positives = 10/21 (47%)
Query: 67 IRELRQEVDKLKEMLISAGVP 87
+ +L +E+ L+ + P
Sbjct: 59 VEQLSRELSTLRNLFKQLPEP 79
>1o7x_A Citrate synthase; lyase, tricarboxylic acid cycle; 2.7A {Sulfolobus
solfataricus} SCOP: a.103.1.1
Length = 377
Score = 24.0 bits (53), Expect = 8.4
Identities = 5/16 (31%), Positives = 9/16 (56%)
Query: 59 NEDPNARIIRELRQEV 74
DP A+I ++L +
Sbjct: 263 TYDPRAKIFKKLALTL 278
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 24.0 bits (51), Expect = 8.7
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
Query: 52 IVNHAVVNEDPNARIIRELRQEVDK-LKEM 80
I + ++P + IR+ R+E K L+E+
Sbjct: 74 IAQADRLTQEPES--IRKWREEQRKRLQEL 101
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 24.1 bits (53), Expect = 8.9
Identities = 5/25 (20%), Positives = 8/25 (32%), Gaps = 1/25 (4%)
Query: 67 IRELRQE-VDKLKEMLISAGVPVSW 90
I R +KL+ + W
Sbjct: 321 ITNNRILFFNKLETYQKKYNLNYDW 345
>3ma8_A Pyruvate kinase; parasitology, pyruvate kiase, glycol kinase,
magnesium, transferase, structural genomi structural
genomics consortium; HET: CIT; 2.64A {Cryptosporidium
parvum}
Length = 534
Score = 24.2 bits (53), Expect = 9.3
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 15 ENPTMLHKTVMVATVSPAADNYEETLSTLRYA 46
+N KT ++ T+ P+ +N E+L L
Sbjct: 46 DNDVTQRKTQIICTIGPSCNN-VESLIGLIDK 76
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription
regulation, nucleus, activator, repressor, DNA-binding,
phosphoprotein, differentiation; 2.30A {Mus musculus}
PDB: 1fos_E* 1a02_F* 1s9k_D
Length = 63
Score = 23.2 bits (50), Expect = 9.4
Identities = 6/17 (35%), Positives = 11/17 (64%)
Query: 67 IRELRQEVDKLKEMLIS 83
I L +E +KL+ +L +
Sbjct: 46 IANLLKEKEKLEFILAA 62
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.132 0.397
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,461,499
Number of extensions: 75167
Number of successful extensions: 412
Number of sequences better than 10.0: 1
Number of HSP's gapped: 406
Number of HSP's successfully gapped: 92
Length of query: 91
Length of database: 6,701,793
Length adjustment: 58
Effective length of query: 33
Effective length of database: 5,082,375
Effective search space: 167718375
Effective search space used: 167718375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)