RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17366
(91 letters)
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 85.8 bits (211), Expect = 4e-22
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEML 81
KT+M +SPA N +ET ++L YA R + IVN N + + L++ V KE
Sbjct: 292 KTLMFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNVSS--KEVARLKKLVSYWKEQA 349
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 85.4 bits (210), Expect = 5e-22
Identities = 24/58 (41%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKE 79
+T ++ SP++ N ETLSTLR+ RAK I N A VN + + EL+Q + K K
Sbjct: 299 RTTLIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNAELS---PAELKQMLAKAKT 353
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 64.2 bits (155), Expect = 2e-14
Identities = 21/33 (63%), Positives = 27/33 (81%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRIVN 54
+T ++AT+SPA+ N EETLSTL YA RAK I+N
Sbjct: 312 RTSIIATISPASLNLEETLSTLEYAHRAKNILN 344
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 62.7 bits (151), Expect = 7e-14
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
KT+M +SP++ + ETL++LR+A +
Sbjct: 309 KTLMFVNISPSSSHINETLNSLRFASKVNST 339
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 61.5 bits (148), Expect = 2e-13
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
+T M+A +SP + E TL+TLRYADR K +
Sbjct: 331 RTCMIAMISPGISSCEYTLNTLRYADRVKEL 361
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 61.5 bits (148), Expect = 2e-13
Identities = 22/29 (75%), Positives = 25/29 (86%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
+T MVA +SPA NY+ETLSTLRYADRAK
Sbjct: 321 RTAMVAALSPADINYDETLSTLRYADRAK 349
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 61.5 bits (148), Expect = 2e-13
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAKRI 52
+T +V SP++ N ET STL + RAK I
Sbjct: 293 RTTIVICCSPSSYNESETKSTLLFGQRAKTI 323
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 59.6 bits (143), Expect = 9e-13
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
K++M+A +SP E+TL+TLRY+ R K
Sbjct: 301 KSIMIANISPTISCCEQTLNTLRYSSRVK 329
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 59.2 bits (142), Expect = 1e-12
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 22 KTVMVATVSPAADNYEETLSTLRYADRAK 50
KT+M VSP D ++E++ +LR+A
Sbjct: 338 KTLMFINVSPFQDCFQESVKSLRFAASVN 366
>d2clyc1 f.45.1.1 (C:5-70) ATPase subunit F6 {Cow (Bos taurus)
[TaxId: 9913]}
Length = 66
Score = 25.8 bits (57), Expect = 0.31
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 61 DPNARIIRELRQEVDKLKEM 80
D ++L +E+ KLK+M
Sbjct: 27 DAGPEYQQDLDRELFKLKQM 46
>d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal
domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Length = 282
Score = 26.6 bits (58), Expect = 0.44
Identities = 6/22 (27%), Positives = 11/22 (50%)
Query: 16 NPTMLHKTVMVATVSPAADNYE 37
P T ++ T+ PA+ + E
Sbjct: 26 APITARNTGIICTIGPASRSVE 47
>d1bola_ d.124.1.1 (A:) Ribonuclease Rh {Rhizopus niveus [TaxId:
4844]}
Length = 222
Score = 25.2 bits (54), Expect = 1.4
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 1/72 (1%)
Query: 14 WENPTMLHKTVMVATVSPAADNYEETLSTLRYADRAKRIVN-HAVVNEDPNARIIRELRQ 72
W + H T + DNYEE + Y +A + + + V + I
Sbjct: 102 WSHEWSKHGTCVSTYDPDCYDNYEEGEDIVDYFQKAMDLRSQYNVYKAFSSNGITPGGTY 161
Query: 73 EVDKLKEMLISA 84
+++ + S
Sbjct: 162 TATEMQSAIESY 173
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis)
[TaxId: 7054]}
Length = 541
Score = 24.9 bits (53), Expect = 1.6
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 44 RYADRAKRIVNHAVVNEDPNARI-IRELRQEVDKLKEMLISAGV 86
RYA I A + I E + +L E + G+
Sbjct: 29 RYALVPGTI---AFTDAHIEVNITYAEYFEMSVRLAEAMKRYGL 69
>d1ldja3 e.40.1.1 (A:411-686) Cullin homolog 1, cul-1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 276
Score = 24.2 bits (52), Expect = 3.1
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 5/38 (13%)
Query: 49 AKRIVNHAVVNEDPNARIIRELRQE-----VDKLKEML 81
AKR+V+ ++D A +I +L+Q KL+ M
Sbjct: 61 AKRLVHQNSASDDAEASMISKLKQACGFEYTSKLQRMF 98
>d2hyec3 e.40.1.1 (C:403-675) Cullin-4A {Human (Homo sapiens)
[TaxId: 9606]}
Length = 273
Score = 23.8 bits (51), Expect = 4.3
Identities = 9/38 (23%), Positives = 17/38 (44%), Gaps = 5/38 (13%)
Query: 49 AKRIVNHAVVNEDPNARIIRELRQE-----VDKLKEML 81
AKR++ + D ++ +L+ E KL+ M
Sbjct: 56 AKRLLVGKSASVDAEKSMLSKLKHECGAAFTSKLEGMF 93
>d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 265
Score = 23.4 bits (50), Expect = 5.0
Identities = 9/33 (27%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 11 LRYWENPTMLHKTVMVATVSPAADNYEETLSTL 43
L + +T ++ T+ P +N ETL L
Sbjct: 10 LNVVAGSDL-RRTSIIGTIGPKTNN-PETLVAL 40
>d1huwa_ a.26.1.1 (A:) Growth hormone, somatotropin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 191
Score = 23.3 bits (50), Expect = 5.5
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 2/41 (4%)
Query: 5 HWILGLLRYWENPTM-LHKTVMVATVSPAAD-NYEETLSTL 43
L L++ W P L + V A+D N + L L
Sbjct: 77 RISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDL 117
>d1pixa2 c.14.1.4 (A:1-287) Glutaconyl-CoA decarboxylase A subunit
{Acidaminococcus fermentans [TaxId: 905]}
Length = 287
Score = 23.4 bits (49), Expect = 5.6
Identities = 7/37 (18%), Positives = 14/37 (37%)
Query: 44 RYADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKEM 80
K + NE+ +I E+ Q + + +E
Sbjct: 11 NMPQVGKPLKKADAANEEQLKKIEEEIHQLIKEAQEA 47
>d1nd9a_ a.6.1.6 (A:) N-terminal subdomain of bacterial
translation initiation factor IF2 {Escherichia coli
[TaxId: 562]}
Length = 49
Score = 21.8 bits (47), Expect = 6.7
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 69 ELRQEVDKLKEMLISAGVPVS 89
E + V++L + AG+ S
Sbjct: 11 ERQTSVERLVQQFADAGIRKS 31
>d2jn6a1 a.4.1.19 (A:1-89) Uncharacterized protein Cgl2762
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 89
Score = 22.5 bits (48), Expect = 7.3
Identities = 9/57 (15%), Positives = 19/57 (33%), Gaps = 4/57 (7%)
Query: 27 ATVSPAADNYEETLSTLRY----ADRAKRIVNHAVVNEDPNARIIRELRQEVDKLKE 79
A++ A++ TL+ + A IR+L++E +
Sbjct: 24 ASLQQIANDLGINRVTLKNWIIKYGSNHNVQGTTPSAAVSEAEQIRQLKKENALQRA 80
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.132 0.397
Gapped
Lambda K H
0.267 0.0419 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 353,634
Number of extensions: 13633
Number of successful extensions: 90
Number of sequences better than 10.0: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 28
Length of query: 91
Length of database: 2,407,596
Length adjustment: 55
Effective length of query: 36
Effective length of database: 1,652,446
Effective search space: 59488056
Effective search space used: 59488056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.7 bits)