BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17370
(262 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 102 VAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
VA+R+RPLL KEL H S +++ P + + + F L +D Q +V+
Sbjct: 15 VALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---GRDRHFGFHVVLAEDAGQEAVYQAC 71
Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
QPLL+A F G+N +FAYGQTGSGK+Y
Sbjct: 72 VQPLLEAFFEGFNATVFAYGQTGSGKTY 99
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 72.0 bits (175), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/88 (42%), Positives = 52/88 (59%), Gaps = 4/88 (4%)
Query: 102 VAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
VA+R+RPLL KEL H S +++ P + + + F L +D Q +V+
Sbjct: 15 VALRVRPLLPKELLHGHQSCLQVEPGLGRVTL---GRDRHFGFHVVLAEDAGQEAVYQAC 71
Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
QPLL+A F G+N +FAYGQTGSGK+Y
Sbjct: 72 VQPLLEAFFEGFNATVFAYGQTGSGKTY 99
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 64/127 (50%), Gaps = 25/127 (19%)
Query: 98 SRMTVAVRIRPLLVKE--LH------MDVSSIEISPDRREMKVND-NAKSYTFKLDHCL- 147
S++ VAVRIRP+ +E LH +D + + ++P + D + F DHC
Sbjct: 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFW 60
Query: 148 -----------GQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNS 196
GQD VF + + +L AF+GYN C+FAYGQTGSGKSY T +
Sbjct: 61 SMDESVKEKYAGQDI----VFKCLGENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQ 116
Query: 197 SVLRPRV 203
L PR+
Sbjct: 117 PGLIPRL 123
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 67.0 bits (162), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
+ V VR+RP + E SI E P R+E+ V D + T+ D G T Q
Sbjct: 19 IQVVVRVRPFNLAERKASAHSIVESDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ + P+LD GYN +FAYGQTG+GK++
Sbjct: 79 IDVYRSVVAPILDEVIMGYNATIFAYGQTGTGKTF 113
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 66.2 bits (160), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/161 (31%), Positives = 74/161 (45%), Gaps = 25/161 (15%)
Query: 81 LIMRSSSENCVADNLECSRMTVAV--RIRPLLVKE----LHMDVSSIEISPDRREMKVN- 133
L+ S + + L+ R + V RIRP L E H+ V + + M +N
Sbjct: 9 LVKEESLRRALHNELQELRGNIRVYCRIRPPLPHEDDNIEHIKVQPFDDDNGDQGMTINR 68
Query: 134 DNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDST 193
N++ FK D Q +F + Q L+ ++ +GYNVC+FAYGQTGSGK+Y
Sbjct: 69 GNSQVIPFKFDKIFDQQETNDEIFKEVGQ-LIQSSLDGYNVCIFAYGQTGSGKTY----- 122
Query: 194 LNSSVLRPRVLFYPG-----FSW----SHSGWTGWVSCVVV 225
++L P P FSW + GW+ VSC +
Sbjct: 123 ---TMLNPGDGIVPATINHIFSWIDKLAARGWSYKVSCEFI 160
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 64.3 bits (155), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 79/157 (50%), Gaps = 17/157 (10%)
Query: 71 TPKIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKE--------LHMDVSSIE 122
T K +L ++N+ R N V D + R V RIRP L E + D S++E
Sbjct: 35 TCKEQLFQSNM-ERKELHNTVMDLRDNIR--VFCRIRPPLESEENRMCCTWTYHDESTVE 91
Query: 123 ISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQT 182
+ + K + ++F D + Q+ +F +++ PL+ +A +GYN+C+FAYGQT
Sbjct: 92 LQSIDAQAKSKMGQQIFSF--DQVFHPLSSQSDIFEMVS-PLIQSALDGYNICIFAYGQT 148
Query: 183 GSGKSYRGDSTLNSSVLRPR---VLFYPGFSWSHSGW 216
GSGK+Y D S + PR +LF + + GW
Sbjct: 149 GSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGW 185
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 102 VAVRIRPLLVKE--------LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L E + D S++E+ + K + ++F D + Q
Sbjct: 60 VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 117
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR---VLFYPGFS 210
+ +F +++ PL+ +A +GYN+C+FAYGQTGSGK+Y D S + PR +LF
Sbjct: 118 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 176
Query: 211 WSHSGW 216
+ + GW
Sbjct: 177 YRNLGW 182
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 102 VAVRIRPLLVKE--------LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L E + D S++E+ + K + ++F D + Q
Sbjct: 71 VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 128
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR---VLFYPGFS 210
+ +F +++ PL+ +A +GYN+C+FAYGQTGSGK+Y D S + PR +LF
Sbjct: 129 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 187
Query: 211 WSHSGW 216
+ + GW
Sbjct: 188 YRNLGW 193
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 63.9 bits (154), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 41/126 (32%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 102 VAVRIRPLLVKE--------LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L E + D S++E+ + K + ++F D + Q
Sbjct: 57 VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 114
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR---VLFYPGFS 210
+ +F +++ PL+ +A +GYN+C+FAYGQTGSGK+Y D S + PR +LF
Sbjct: 115 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 173
Query: 211 WSHSGW 216
+ + GW
Sbjct: 174 YRNLGW 179
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
+ V VR RP + E SI E P R+E+ V D + T+ D G T Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ + P+LD GYN +FAYGQTG+GK++
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 113
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
+ V VR RP + E SI E P R+E+ V D + T+ D G T Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ + P+LD GYN +FAYGQTG+GK++
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 113
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
+ V VR RP + E SI E P R+E+ V D + T+ D G T Q
Sbjct: 21 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 80
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ + P+LD GYN +FAYGQTG+GK++
Sbjct: 81 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 115
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
+ V VR RP + E SI E P R+E+ V D + T+ D G T Q
Sbjct: 18 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 77
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ + P+LD GYN +FAYGQTG+GK++
Sbjct: 78 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 112
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
+ V VR RP + E SI E P R+E+ V D + T+ D G T Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ + P+LD GYN +FAYGQTG+GK++
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 113
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 39/106 (36%), Positives = 55/106 (51%), Gaps = 11/106 (10%)
Query: 94 NLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVN-----DNAKSYTFKLD---H 145
N+ + + VAVR+RP +E+ D I VN + KS++F H
Sbjct: 16 NMPGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSH 75
Query: 146 CLGQDTD---QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+D + Q V+ I + +L AF GYNVC+FAYGQTG+GKSY
Sbjct: 76 TSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSY 121
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L + D S I ++ K+ + A+ + FK D Q
Sbjct: 7 VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 66
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR----GDSTLNSSVLRPRVLFYPGF 209
VF + Q L+ ++ +GYNVC+FAYGQTGSGK++ GD + S++ F
Sbjct: 67 VDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHI-------F 118
Query: 210 SWSH----SGWTGWVSC 222
+W + GW V+C
Sbjct: 119 NWINKLKTKGWDYKVNC 135
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L + D S I ++ K+ + A+ + FK D Q
Sbjct: 7 VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 66
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR----GDSTLNSSVLRPRVLFYPGF 209
VF + Q L+ ++ +GYNVC+FAYGQTGSGK++ GD + S++ F
Sbjct: 67 VDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHI-------F 118
Query: 210 SWSH----SGWTGWVSC 222
+W + GW V+C
Sbjct: 119 NWINKLKTKGWDYKVNC 135
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L + D S I ++ K+ + A+ + FK D Q
Sbjct: 6 VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 65
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR----GDSTLNSSVLRPRVLFYPGF 209
VF + Q L+ ++ +GYNVC+FAYGQTGSGK++ GD + S++ F
Sbjct: 66 VDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHI-------F 117
Query: 210 SWSH----SGWTGWVSC 222
+W + GW V+C
Sbjct: 118 NWINKLKTKGWDYKVNC 134
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L + D S I ++ K+ + A+ + FK D Q
Sbjct: 7 VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 66
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR----GDSTLNSSVLRPRVLFYPGF 209
VF + Q L+ ++ +GYNVC+FAYGQTGSGK++ GD + S++ F
Sbjct: 67 VDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHI-------F 118
Query: 210 SWSH----SGWTGWVSC 222
+W + GW V+C
Sbjct: 119 NWINKLKTKGWDYKVNC 135
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 64/137 (46%), Gaps = 24/137 (17%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L + D S I ++ K+ + A+ + FK D Q
Sbjct: 18 VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 77
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR----GDSTLNSSVLRPRVLFYPGF 209
VF + Q L+ ++ +GYNVC+FAYGQTGSGK++ GD + S++ F
Sbjct: 78 VDVFKEVGQ-LVQSSLDGYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHI-------F 129
Query: 210 SWSH----SGWTGWVSC 222
+W + GW V+C
Sbjct: 130 NWINKLKTKGWDYKVNC 146
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
+ V VR RP + E SI E P R+E+ V D + T+ D G T Q
Sbjct: 19 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 78
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ + P+LD GYN +FAYGQTG+GK++
Sbjct: 79 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 113
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 63.2 bits (152), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
+ V VR RP + E SI E P R+E+ V D + T+ D G T Q
Sbjct: 10 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 69
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ + P+LD GYN +FAYGQTG+GK++
Sbjct: 70 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 104
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 6/95 (6%)
Query: 100 MTVAVRIRPLLVKELHMDVSSI-EISPDRREMKVN-----DNAKSYTFKLDHCLGQDTDQ 153
+ V VR RP + E SI E P R+E+ V D + T+ D G T Q
Sbjct: 4 IQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQ 63
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ + P+LD GYN +FAYGQTG+GK++
Sbjct: 64 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 98
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 62.8 bits (151), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 65/126 (51%), Gaps = 14/126 (11%)
Query: 102 VAVRIRPLLVKE--------LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L E + D S++E+ + K + ++F D + Q
Sbjct: 60 VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 117
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR---VLFYPGFS 210
+ +F +++ PL+ +A +GYN+C+FAYGQ+GSGK+Y D S + PR +LF
Sbjct: 118 SDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 176
Query: 211 WSHSGW 216
+ + GW
Sbjct: 177 YRNLGW 182
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKVN-----DNAKSYTFKLD---HCLGQDTD- 152
VAVR+RP +E+ D I VN + KS++F H +D +
Sbjct: 8 VAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINY 67
Query: 153 --QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
Q V+ I + +L AF GYNVC+FAYGQTG+GKSY
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSY 105
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKVN-----DNAKSYTFKLD---HCLGQDTD- 152
VAVR+RP +E+ D I VN + KS++F H +D +
Sbjct: 8 VAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINY 67
Query: 153 --QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
Q V+ I + +L AF GYNVC+FAYGQTG+GKSY
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSY 105
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 61.6 bits (148), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 51/98 (52%), Gaps = 11/98 (11%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKVN-----DNAKSYTFKLD---HCLGQDTD- 152
VAVR+RP +E+ D I VN + KS++F H +D +
Sbjct: 8 VAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINY 67
Query: 153 --QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
Q V+ I + +L AF GYNVC+FAYGQTG+GKSY
Sbjct: 68 ASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSY 105
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 9/95 (9%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V +RIRP L + D S I ++ K+ + A+ + FK D Q
Sbjct: 63 VYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 122
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
VF + Q L+ ++ +GYNV +FAYGQTGSGK++
Sbjct: 123 VDVFKEVGQ-LVQSSLDGYNVAIFAYGQTGSGKTF 156
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 3/92 (3%)
Query: 100 MTVAVRIRPLLVKELHMDVSSIEISPDRREMKVN---DNAKSYTFKLDHCLGQDTDQTSV 156
+ V VR+RPL +E + + + RE+ D+ + F D G ++ Q V
Sbjct: 25 IQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDV 84
Query: 157 FTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
++++ PL++ NGYN +FAYGQTG+GK++
Sbjct: 85 YSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTH 116
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 58.9 bits (141), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 65/136 (47%), Gaps = 17/136 (12%)
Query: 102 VAVRIRPLLVKE----LHMDVSSIEISPDRREMKVNDNAK---SYTFKLDHCLGQDTDQT 154
V R+RP L+ E H+ + + + + +N N SY F+ D
Sbjct: 9 VYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNK 68
Query: 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSS-VLRPRVLFYPGFSWS- 212
+F I Q L+ ++ +GYNVC+FAYGQTGSGK+Y + LN+ + P L + F W+
Sbjct: 69 EIFEEIRQ-LVQSSLDGYNVCIFAYGQTGSGKTY---TMLNAGDGMIPMTLSHI-FKWTA 123
Query: 213 ---HSGWTGWVSCVVV 225
GW + C +
Sbjct: 124 NLKERGWNYEMECEYI 139
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 96 ECSRMTVAVRIRPLLVKELHM-DVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQT 154
E + V VR+RPL +E + + + + D + D +KS+ F D +
Sbjct: 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNF--DRVFHGNETTK 59
Query: 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+V+ IA P++D+A GYN +FAYGQT SGK+Y
Sbjct: 60 NVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTY 93
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 43/86 (50%), Gaps = 8/86 (9%)
Query: 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR------GDS 192
+ F D + Q VF IA L+ +A +GY VC+FAYGQTGSGK++ GD
Sbjct: 83 HDFSFDRVFPPGSGQDEVFEEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDP 141
Query: 193 TLNSSVLRP-RVLFYPGFSWSHSGWT 217
L + R R LF S GWT
Sbjct: 142 QLEGLIPRALRHLFSVAQELSGQGWT 167
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 55.1 bits (131), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Query: 136 AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
K +F+LD Q VF + Q L+ + +G+NVC+FAYGQTG+GK+Y + T
Sbjct: 45 GKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAE 103
Query: 196 SSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDF 230
+ + R L FS + W + V A +
Sbjct: 104 NPGINQRALQLL-FSEVQEKASDWEYTITVSAAEI 137
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 54.7 bits (130), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%)
Query: 121 IEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYG 180
I + D R VN+ ++FKLD L D Q V+ +A+ ++ A +GYN + YG
Sbjct: 54 IHLKKDIRRGVVNNQQTDWSFKLDGVL-HDASQDLVYETVAKDVVSQALDGYNGTIMCYG 112
Query: 181 QTGSGKSY 188
QTG+GK+Y
Sbjct: 113 QTGAGKTY 120
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/51 (47%), Positives = 30/51 (58%)
Query: 153 QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRV 203
Q V+ + + LD F GY+ C+FAYGQTGSGKSY T + L PR
Sbjct: 117 QEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRT 167
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/105 (29%), Positives = 50/105 (47%), Gaps = 11/105 (10%)
Query: 95 LECSRMTVAVRIRPLLVKE--------LHMDVSSIEI---SPDRREMKVNDNAKSYTFKL 143
+ + V VR RPL +E + MD +S ++ P++ + TF
Sbjct: 1 MSSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTF 60
Query: 144 DHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
D Q + +F +PL+DA G+N +FAYGQTG+GK++
Sbjct: 61 DAVYDQTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTW 105
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 55/119 (46%), Gaps = 20/119 (16%)
Query: 78 RANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKE--------LHMDVSSIEISPDRRE 129
R NL + +SE + V R RPL KE L MDV +++
Sbjct: 11 RENLYFQGASE----------ALKVVARCRPLSRKEEAAGHEQILTMDVKLGQVTLRNPR 60
Query: 130 MKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+ K++TF D + Q ++ +PL+D+ G+N +FAYGQTG+GK+Y
Sbjct: 61 AAPGELPKTFTF--DAVYDASSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTY 117
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 25/127 (19%)
Query: 78 RANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKE--------LHMDVSSIEISPDRRE 129
R NL + SSE+ + V VR RP+ KE + +DV ++S +
Sbjct: 11 RENLYFQGSSES----------VRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPK 60
Query: 130 MKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY- 188
++ K++TF D + Q ++ +PL+D+ G+N +FAYGQTG+GK+Y
Sbjct: 61 GTAHEMPKTFTF--DAVYDWNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYT 118
Query: 189 ----RGD 191
RGD
Sbjct: 119 MEGIRGD 125
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/101 (32%), Positives = 52/101 (51%), Gaps = 22/101 (21%)
Query: 99 RMTVAVRIRPLLVKELHMDVSSIEISPDRREMKV-----------NDNAKSYTFKLDHCL 147
++ V R+RPL KE+ I+ +R ++ +D AK + + D
Sbjct: 6 KIRVYCRLRPLCEKEI--------IAKERNAIRSVDEFTVEHLWKDDKAKQHMY--DRVF 55
Query: 148 GQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+ Q VF + L+ +A +GYNVC+FAYGQTGSGK++
Sbjct: 56 DGNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTF 95
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/130 (29%), Positives = 56/130 (43%), Gaps = 25/130 (19%)
Query: 97 CSRMTVAVRIRPLLVKE----LHMDVSSIE-----ISPDRREMK-------VNDNA---- 136
C M V VR+RP KE H V ++ P + E+ N N
Sbjct: 9 CHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQ 68
Query: 137 -KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
K F D + + Q+ VF +P+L + NGYN + AYG TG+GK++ T+
Sbjct: 69 NKDLKFVFDAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTH----TML 124
Query: 196 SSVLRPRVLF 205
S P V++
Sbjct: 125 GSADEPGVMY 134
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 92 ADNLECSRMTVAVRIRPLLVKELHM-DVSSIEI-SPD-------RREMKVNDNAKSYTFK 142
AD ++ R+ V VR RPL KE M D+ I I S D ++++ + ++ TF+
Sbjct: 83 ADPIDEHRICVCVRKRPLNKKETQMKDLDVITIPSKDVVMVHEPKQKVDLTRYLENQTFR 142
Query: 143 LDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
D+ V+ A+PL++ F FAYGQTGSGK++
Sbjct: 143 FDYAFDDSAPNEMVYRFTARPLVETIFERGMATCFAYGQTGSGKTH 188
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%)
Query: 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+F D Q+ +F +P +D NGYN +FAYGQTG+GKSY
Sbjct: 48 SFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSY 96
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 91 VADNLECSRMTVAVRIRPLLVKEL---HMDVSSIE------ISPDRREMKVNDNAKSYTF 141
V D +E R+ V VR RPL +EL +DV S+ + + ++ + ++ F
Sbjct: 64 VTDPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAF 123
Query: 142 KLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
D + V+ A+PL+ F G FAYGQTGSGK++
Sbjct: 124 CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTH 170
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 91 VADNLECSRMTVAVRIRPLLVKEL---HMDVSSIE------ISPDRREMKVNDNAKSYTF 141
+ D +E R+ V VR RPL +EL +DV SI + + ++ + ++ F
Sbjct: 44 MTDPIEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAF 103
Query: 142 KLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
D + V+ A+PL+ F G FAYGQTGSGK++
Sbjct: 104 CFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTH 150
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 48/93 (51%), Gaps = 6/93 (6%)
Query: 99 RMTVAVRIRPLLVKELHMDVSSIEISPDRREMK---VNDNAKSYTFKLDHCLGQDTDQTS 155
++ V RIRPL KE + + D ++ +D K + + D Q
Sbjct: 14 KIRVYCRIRPLNEKESSEREKQMLTTVDEFTVEHPWKDDKRKQHIY--DRVFDMRASQDD 71
Query: 156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+F + L+ +A +GYNVC+FAYGQTGSGK++
Sbjct: 72 IFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTF 103
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 2/87 (2%)
Query: 132 VNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191
+N+N + F D ++ VF ++Q L+ + +G NVC+FAYGQTGSGK++
Sbjct: 423 INNNFSNLRFLFDKIFEREQSNDLVFEELSQ-LIQCSLDGTNVCVFAYGQTGSGKTFTMS 481
Query: 192 STLNSSV-LRPRVLFYPGFSWSHSGWT 217
N + L + +F GW+
Sbjct: 482 HPTNGMIPLSLKKIFNDIEELKEKGWS 508
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 48.1 bits (113), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/117 (33%), Positives = 55/117 (47%), Gaps = 11/117 (9%)
Query: 92 ADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRR--EMKVNDNAKSYTFKLDHCLGQ 149
AD ECS + V R RPL E+ + + P + E V K Y F D L
Sbjct: 1 ADPAECS-IKVMCRFRPLNEAEI---LRGDKFIPKFKGEETVVIGQGKPYVF--DRVLPP 54
Query: 150 DTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLR---PRV 203
+T Q V+ A+ ++ GYN +FAYGQT SGK++ + L+ L PR+
Sbjct: 55 NTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPQLMGIIPRI 111
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 98 SRMTVAVRIRPLLVKELH---------MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLG 148
+R+ VAVR+RP + MD S+EI+ R ++ ++ ++ D G
Sbjct: 21 ARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWR------NHQETLKYQFDAFYG 74
Query: 149 QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+ + Q ++ QP+L G N + AYG TG+GK++
Sbjct: 75 ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTH 114
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 91 VADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQD 150
+AD EC+ + V R RPL E ++ I+ + E V +K Y F D
Sbjct: 1 MADLAECN-IKVMCRFRPL--NESEVNRGDKYIAKFQGEDTVVIASKPYAF--DRVFQSS 55
Query: 151 TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
T Q V+ A+ ++ GYN +FAYGQT SGK++ + L+
Sbjct: 56 TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH 100
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 91 VADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQD 150
+AD EC+ + V R RPL E ++ I+ + E V +K Y F D
Sbjct: 1 MADLAECN-IKVMCRFRPL--NESEVNRGDKYIAKFQGEDTVVIASKPYAF--DRVFQSS 55
Query: 151 TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
T Q V+ A+ ++ GYN +FAYGQT SGK++ + L+
Sbjct: 56 TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLH 100
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 51/105 (48%), Gaps = 5/105 (4%)
Query: 91 VADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQD 150
+AD EC+ + V R RPL E ++ ++ + E V +K Y F D
Sbjct: 1 MADPAECN-IKVMCRFRPL--NESEVNRGDKYVAKFQGEDTVMIASKPYAF--DRVFQSS 55
Query: 151 TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
T Q V+ A+ ++ GYN +FAYGQT SGK++ + L+
Sbjct: 56 TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTMEGKLH 100
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 126 DRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSG 185
D + + V+ N F DH Q ++ + PL+D G+ AYGQTG+G
Sbjct: 52 DGKSLIVDQN----EFHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTG 107
Query: 186 KSY 188
KSY
Sbjct: 108 KSY 110
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)
Query: 126 DRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSG 185
D + + V+ N F DH Q ++ + PL+D G+ AYGQTG+G
Sbjct: 52 DGKSLIVDQNE----FHFDHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTG 107
Query: 186 KSY 188
KSY
Sbjct: 108 KSY 110
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 43.9 bits (102), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Query: 100 MTVAVRIRPLLVKEL---HMDVSSIE------ISPDRREMKVNDNAKSYTFKLDHCLGQD 150
+ V VR RPL +EL +DV S+ + + ++ + ++ F D +
Sbjct: 1 ICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDET 60
Query: 151 TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ A+PL+ F G FAYGQTGSGK++
Sbjct: 61 ASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTH 98
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 5/72 (6%)
Query: 136 AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN 195
K Y F D + Q V+ A+ ++ GYN +FAYGQT SGK++ + +
Sbjct: 50 GKVYLF--DKVFKPNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIG 107
Query: 196 SSV---LRPRVL 204
SV + PR++
Sbjct: 108 DSVKQGIIPRIV 119
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 10/99 (10%)
Query: 100 MTVAVRIRPL---LVKELHMDVSSIE------ISPDRREMKVNDNAKSYTFKLDHCLGQD 150
+ V VR RPL K+ D+ +++ I R ++ + + + F +D
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDT 61
Query: 151 TDQTSVFTIIAQPLL-DAAFNGYNVCLFAYGQTGSGKSY 188
D +V+ +PL+ D NG FAYGQTGSGK+Y
Sbjct: 62 VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTY 100
>pdb|1H80|A Chain A, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1H80|B Chain B, 1,3-Alpha-1,4-Beta-D-Galactose-4-Sulfate-3,6-Anhydro-D-
Galactose-2-Sulfate 4 Galactohydrolase
pdb|1KTW|A Chain A, Iota-carrageenase Complexed To Iota-carrageenan Fragments
pdb|1KTW|B Chain B, Iota-carrageenase Complexed To Iota-carrageenan Fragments
Length = 464
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 74 IKLPRANLIMRSSSE----NCVADNLECSRMTVAVRIRPLLVKELHMDVSSI 121
+++ NL+M++ + N ADN+ CS+ AV P +K + V+++
Sbjct: 215 LRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNV 266
>pdb|3LMW|A Chain A, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
pdb|3LMW|B Chain B, Crystal Structure Of Iota-Carrageenase Family Gh82 From A.
Fortis In Absence Of Chloride Ions
Length = 473
Score = 30.4 bits (67), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 74 IKLPRANLIMRSSSE----NCVADNLECSRMTVAVRIRPLLVKELHMDVSSI 121
+++ NL+M++ + N ADN+ CS+ AV P +K + V+++
Sbjct: 216 LRMETDNLLMKNYKQGGIRNIFADNIRCSKGLAAVMFGPHFMKNGDVQVTNV 267
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.130 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,579,569
Number of Sequences: 62578
Number of extensions: 299323
Number of successful extensions: 659
Number of sequences better than 100.0: 59
Number of HSP's better than 100.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 595
Number of HSP's gapped (non-prelim): 59
length of query: 262
length of database: 14,973,337
effective HSP length: 97
effective length of query: 165
effective length of database: 8,903,271
effective search space: 1469039715
effective search space used: 1469039715
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)