Query psy17370
Match_columns 262
No_of_seqs 220 out of 1587
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 20:41:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17370.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17370hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01370 KISc_KIP3_like Kinesin 100.0 9.8E-42 2.1E-46 313.6 15.6 164 99-262 1-187 (338)
2 cd01368 KISc_KIF23_like Kinesi 100.0 2.1E-41 4.7E-46 312.1 16.1 162 99-262 2-188 (345)
3 KOG4280|consensus 100.0 3E-42 6.6E-47 328.8 6.8 166 97-262 4-187 (574)
4 KOG0243|consensus 100.0 2.3E-41 5E-46 336.0 13.0 167 96-262 47-242 (1041)
5 cd01373 KISc_KLP2_like Kinesin 100.0 1.3E-40 2.9E-45 306.0 15.1 163 98-262 1-186 (337)
6 PLN03188 kinesin-12 family pro 100.0 2.9E-40 6.3E-45 331.5 17.0 160 96-262 96-280 (1320)
7 cd01365 KISc_KIF1A_KIF1B Kines 100.0 3.9E-40 8.4E-45 305.0 15.7 165 98-262 1-192 (356)
8 cd01367 KISc_KIF2_like Kinesin 100.0 3.4E-40 7.3E-45 301.6 14.4 165 98-262 1-181 (322)
9 KOG0242|consensus 100.0 6E-40 1.3E-44 322.6 13.3 166 97-262 5-185 (675)
10 cd01376 KISc_KID_like Kinesin 100.0 4.2E-39 9.1E-44 294.0 15.9 164 99-262 1-178 (319)
11 cd01374 KISc_CENP_E Kinesin mo 100.0 5.3E-39 1.2E-43 293.6 16.2 163 99-262 1-172 (321)
12 cd01371 KISc_KIF3 Kinesin moto 100.0 4.3E-39 9.4E-44 295.6 15.2 165 98-262 1-184 (333)
13 KOG0245|consensus 100.0 3.1E-40 6.8E-45 323.9 6.4 165 97-261 3-191 (1221)
14 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.2E-38 2.5E-43 291.8 15.1 164 98-262 2-179 (325)
15 KOG0240|consensus 100.0 2.4E-39 5.2E-44 303.2 9.9 167 96-262 5-185 (607)
16 cd01364 KISc_BimC_Eg5 Kinesin 100.0 1.9E-38 4.2E-43 293.3 15.5 165 98-262 2-195 (352)
17 cd01372 KISc_KIF4 Kinesin moto 100.0 5.9E-38 1.3E-42 288.8 13.8 161 99-262 2-182 (341)
18 cd01366 KISc_C_terminal Kinesi 100.0 2.9E-37 6.2E-42 283.0 16.7 165 97-262 1-181 (329)
19 cd01375 KISc_KIF9_like Kinesin 100.0 1.6E-37 3.5E-42 285.3 14.5 159 99-262 1-188 (334)
20 cd00106 KISc Kinesin motor dom 100.0 1.4E-36 3.1E-41 277.9 16.5 164 99-262 1-181 (328)
21 KOG0239|consensus 100.0 2.1E-37 4.6E-42 303.7 6.0 177 83-262 301-495 (670)
22 smart00129 KISc Kinesin motor, 100.0 1.2E-35 2.6E-40 272.8 16.3 164 99-262 1-179 (335)
23 KOG0246|consensus 100.0 6E-36 1.3E-40 280.1 12.6 170 93-262 203-397 (676)
24 KOG0241|consensus 100.0 1.8E-36 3.8E-41 294.4 7.4 166 96-261 2-195 (1714)
25 PF00225 Kinesin: Kinesin moto 100.0 5.6E-35 1.2E-39 268.1 9.7 158 105-262 1-183 (335)
26 KOG0247|consensus 100.0 2.4E-32 5.2E-37 262.1 7.3 164 97-262 30-284 (809)
27 COG5059 KIP1 Kinesin-like prot 99.9 9.8E-28 2.1E-32 233.6 8.0 159 97-262 21-189 (568)
28 KOG0244|consensus 99.9 1E-24 2.2E-29 214.8 2.0 152 106-261 1-168 (913)
29 cd01363 Motor_domain Myosin an 99.7 2.9E-18 6.3E-23 145.3 3.2 53 156-209 8-60 (186)
30 COG0556 UvrB Helicase subunit 95.7 0.014 3E-07 56.6 4.6 83 139-226 3-96 (663)
31 PF00308 Bac_DnaA: Bacterial d 95.0 0.0091 2E-07 51.8 0.8 50 139-191 3-52 (219)
32 COG2805 PilT Tfp pilus assembl 93.2 0.039 8.4E-07 50.3 1.2 30 161-190 113-142 (353)
33 PRK06893 DNA replication initi 93.1 0.046 9.9E-07 47.6 1.5 48 138-191 10-57 (229)
34 COG2804 PulE Type II secretory 92.5 0.048 1E-06 52.7 0.9 32 161-192 246-277 (500)
35 PRK14086 dnaA chromosomal repl 92.0 0.055 1.2E-06 53.8 0.6 52 137-191 281-332 (617)
36 PRK09087 hypothetical protein; 91.9 0.075 1.6E-06 46.3 1.3 49 137-191 14-62 (226)
37 PRK06620 hypothetical protein; 91.7 0.059 1.3E-06 46.6 0.5 52 137-192 9-63 (214)
38 PRK05642 DNA replication initi 90.9 0.099 2.2E-06 45.7 1.1 48 137-191 12-63 (234)
39 PRK06526 transposase; Provisio 90.0 0.13 2.9E-06 45.7 1.1 40 147-191 77-116 (254)
40 PRK14088 dnaA chromosomal repl 89.9 0.11 2.3E-06 49.9 0.4 51 137-191 98-148 (440)
41 PRK08084 DNA replication initi 89.1 0.17 3.7E-06 44.2 1.0 49 137-191 15-63 (235)
42 PF04851 ResIII: Type III rest 88.7 0.16 3.5E-06 41.2 0.6 19 173-191 25-43 (184)
43 PRK14087 dnaA chromosomal repl 88.7 0.16 3.5E-06 48.8 0.7 49 140-191 111-159 (450)
44 TIGR02928 orc1/cdc6 family rep 88.4 0.19 4.1E-06 46.3 0.9 49 141-190 8-57 (365)
45 PRK12377 putative replication 88.2 0.21 4.6E-06 44.3 1.0 49 141-191 71-119 (248)
46 PRK08116 hypothetical protein; 87.8 0.18 3.8E-06 45.2 0.2 53 137-191 78-132 (268)
47 TIGR00362 DnaA chromosomal rep 87.7 0.2 4.2E-06 47.3 0.6 52 137-191 103-154 (405)
48 PRK00149 dnaA chromosomal repl 87.2 0.23 4.9E-06 47.6 0.6 52 137-191 115-166 (450)
49 PRK00411 cdc6 cell division co 87.1 0.27 5.9E-06 45.8 1.1 46 144-190 26-72 (394)
50 cd00009 AAA The AAA+ (ATPases 86.6 0.29 6.3E-06 37.5 0.9 19 172-190 18-36 (151)
51 PF01935 DUF87: Domain of unkn 86.1 0.24 5.2E-06 42.6 0.2 15 176-190 26-40 (229)
52 PRK07952 DNA replication prote 86.0 0.34 7.5E-06 42.8 1.1 50 140-191 68-117 (244)
53 cd00046 DEXDc DEAD-like helica 86.0 0.26 5.7E-06 37.3 0.3 17 176-192 3-19 (144)
54 PRK08903 DnaA regulatory inact 85.7 0.36 7.9E-06 41.5 1.1 49 137-190 11-59 (227)
55 TIGR02533 type_II_gspE general 85.3 0.34 7.3E-06 47.1 0.7 28 164-191 233-260 (486)
56 PF00270 DEAD: DEAD/DEAH box h 85.2 0.38 8.3E-06 38.7 1.0 27 163-191 6-32 (169)
57 TIGR02538 type_IV_pilB type IV 85.0 0.3 6.5E-06 48.4 0.3 28 164-191 307-334 (564)
58 PRK08181 transposase; Validate 84.9 0.49 1.1E-05 42.4 1.6 20 170-191 105-124 (269)
59 PRK10436 hypothetical protein; 84.8 0.33 7.1E-06 46.9 0.4 28 164-191 209-236 (462)
60 PF13401 AAA_22: AAA domain; P 84.2 0.32 6.9E-06 37.6 0.1 18 173-190 4-21 (131)
61 COG1484 DnaC DNA replication p 84.2 0.45 9.7E-06 42.3 1.0 49 139-190 74-122 (254)
62 PF13245 AAA_19: Part of AAA d 83.9 0.42 9E-06 34.4 0.6 25 166-191 4-28 (76)
63 COG0593 DnaA ATPase involved i 83.9 0.4 8.7E-06 45.5 0.6 49 137-191 80-131 (408)
64 PF00437 T2SE: Type II/IV secr 83.7 0.34 7.3E-06 42.9 0.0 18 173-190 127-144 (270)
65 COG1474 CDC6 Cdc6-related prot 83.6 0.47 1E-05 44.5 0.9 26 165-190 33-59 (366)
66 PF12846 AAA_10: AAA-like doma 82.9 0.41 8.8E-06 42.2 0.2 19 173-191 1-19 (304)
67 TIGR01420 pilT_fam pilus retra 82.6 0.52 1.1E-05 43.6 0.8 28 164-191 113-140 (343)
68 PRK06835 DNA replication prote 82.6 0.54 1.2E-05 43.4 0.9 30 161-191 172-201 (329)
69 PF01695 IstB_IS21: IstB-like 82.5 0.64 1.4E-05 38.9 1.2 17 175-191 49-65 (178)
70 PRK08727 hypothetical protein; 82.1 0.5 1.1E-05 41.2 0.5 18 174-191 42-59 (233)
71 PRK08939 primosomal protein Dn 82.1 0.52 1.1E-05 43.1 0.6 50 141-191 124-174 (306)
72 cd01129 PulE-GspE PulE/GspE Th 81.9 0.57 1.2E-05 41.8 0.8 28 164-191 71-98 (264)
73 PF06309 Torsin: Torsin; Inte 81.7 0.34 7.3E-06 38.6 -0.7 18 173-190 52-70 (127)
74 TIGR02524 dot_icm_DotB Dot/Icm 80.8 0.68 1.5E-05 43.3 0.9 23 169-191 130-152 (358)
75 TIGR02525 plasmid_TraJ plasmid 80.7 0.67 1.5E-05 43.5 0.8 19 172-190 148-166 (372)
76 PRK13894 conjugal transfer ATP 80.6 0.62 1.3E-05 42.9 0.5 27 163-190 139-165 (319)
77 cd01131 PilT Pilus retraction 80.6 0.57 1.2E-05 39.7 0.3 18 174-191 2-19 (198)
78 TIGR03015 pepcterm_ATPase puta 79.9 0.91 2E-05 39.8 1.3 45 146-190 12-60 (269)
79 PTZ00454 26S protease regulato 79.4 0.58 1.3E-05 44.3 -0.1 92 99-190 88-196 (398)
80 smart00382 AAA ATPases associa 79.0 0.68 1.5E-05 34.9 0.2 16 175-190 4-19 (148)
81 TIGR00631 uvrb excinuclease AB 78.5 1.2 2.6E-05 45.0 1.9 81 141-226 2-93 (655)
82 PTZ00112 origin recognition co 78.3 0.99 2.1E-05 47.1 1.2 28 163-190 769-798 (1164)
83 PRK12422 chromosomal replicati 78.3 0.88 1.9E-05 43.8 0.8 52 137-191 104-159 (445)
84 PRK09183 transposase/IS protei 78.2 1.1 2.4E-05 39.8 1.4 20 170-191 101-120 (259)
85 PF13604 AAA_30: AAA domain; P 78.1 0.87 1.9E-05 38.6 0.6 27 164-190 9-35 (196)
86 PRK13833 conjugal transfer pro 77.7 0.85 1.8E-05 42.0 0.5 27 163-190 135-161 (323)
87 TIGR02782 TrbB_P P-type conjug 77.1 0.89 1.9E-05 41.4 0.4 27 163-190 123-149 (299)
88 PTZ00361 26 proteosome regulat 76.8 1.5 3.3E-05 42.1 1.9 91 100-190 127-234 (438)
89 TIGR01242 26Sp45 26S proteasom 76.8 1.2 2.7E-05 41.3 1.3 16 175-190 158-173 (364)
90 TIGR03420 DnaA_homol_Hda DnaA 76.5 1.3 2.7E-05 37.8 1.2 45 139-190 10-55 (226)
91 PHA00729 NTP-binding motif con 76.4 1.4 3.1E-05 38.5 1.5 29 162-190 6-34 (226)
92 cd01130 VirB11-like_ATPase Typ 76.2 1.1 2.3E-05 37.6 0.6 28 162-190 15-42 (186)
93 COG5008 PilU Tfp pilus assembl 76.1 1.6 3.5E-05 39.4 1.8 28 163-190 117-144 (375)
94 PF13479 AAA_24: AAA domain 75.8 1.2 2.5E-05 38.3 0.8 20 173-192 3-22 (213)
95 PF13191 AAA_16: AAA ATPase do 75.5 0.99 2.1E-05 36.8 0.2 27 164-190 15-41 (185)
96 PF05970 PIF1: PIF1-like helic 75.3 1 2.2E-05 42.1 0.3 37 150-190 3-39 (364)
97 PF01637 Arch_ATPase: Archaeal 74.8 0.86 1.9E-05 38.3 -0.3 27 164-190 11-37 (234)
98 COG5059 KIP1 Kinesin-like prot 74.8 0.19 4.1E-06 49.8 -4.9 104 98-209 305-416 (568)
99 PF00448 SRP54: SRP54-type pro 74.5 1.1 2.4E-05 38.1 0.3 15 176-190 4-18 (196)
100 KOG0989|consensus 74.0 1.3 2.9E-05 40.5 0.7 30 161-190 44-74 (346)
101 PRK13900 type IV secretion sys 74.0 1.3 2.8E-05 41.0 0.6 27 163-190 151-177 (332)
102 COG1201 Lhr Lhr-like helicases 73.1 2.1 4.7E-05 44.1 2.0 36 164-210 30-65 (814)
103 smart00487 DEXDc DEAD-like hel 73.1 1.8 3.8E-05 34.9 1.2 27 164-191 16-42 (201)
104 PF01580 FtsK_SpoIIIE: FtsK/Sp 72.3 1.2 2.5E-05 37.7 -0.1 46 175-237 40-85 (205)
105 PF02562 PhoH: PhoH-like prote 71.6 2.1 4.4E-05 36.9 1.3 19 172-190 18-36 (205)
106 PF13086 AAA_11: AAA domain; P 71.4 1.7 3.6E-05 36.5 0.7 26 165-191 10-35 (236)
107 PF13207 AAA_17: AAA domain; P 71.4 1.8 3.8E-05 32.9 0.8 16 175-190 1-16 (121)
108 PRK06921 hypothetical protein; 71.2 1.8 3.9E-05 38.7 0.9 19 173-191 117-135 (266)
109 PRK12402 replication factor C 70.5 1.8 4E-05 39.1 0.8 20 171-190 34-53 (337)
110 PF00910 RNA_helicase: RNA hel 70.3 1.3 2.7E-05 33.7 -0.3 15 176-190 1-15 (107)
111 PRK03992 proteasome-activating 70.1 2 4.4E-05 40.4 1.0 51 140-190 127-182 (389)
112 PHA02544 44 clamp loader, smal 69.7 1.8 4E-05 39.0 0.6 21 170-190 39-60 (316)
113 PF07693 KAP_NTPase: KAP famil 69.5 2.2 4.8E-05 38.4 1.1 20 171-190 18-37 (325)
114 PF00004 AAA: ATPase family as 69.3 1.8 4E-05 33.0 0.4 15 176-190 1-15 (132)
115 COG1222 RPT1 ATP-dependent 26S 69.2 4.1 8.9E-05 38.2 2.8 118 97-214 92-243 (406)
116 cd00268 DEADc DEAD-box helicas 69.0 2.5 5.4E-05 35.2 1.2 24 164-189 29-52 (203)
117 PTZ00424 helicase 45; Provisio 68.8 2.2 4.9E-05 39.7 1.0 26 163-190 57-82 (401)
118 PF00063 Myosin_head: Myosin h 68.7 1.9 4E-05 43.7 0.5 21 170-190 82-102 (689)
119 PF13671 AAA_33: AAA domain; P 68.6 2.2 4.7E-05 33.3 0.8 15 176-190 2-16 (143)
120 KOG0354|consensus 68.4 3.3 7.1E-05 42.2 2.1 24 163-189 69-92 (746)
121 PRK11776 ATP-dependent RNA hel 67.7 3 6.5E-05 39.9 1.6 24 164-189 34-57 (460)
122 KOG2373|consensus 67.6 4.1 9E-05 38.2 2.4 27 163-190 261-290 (514)
123 PRK11192 ATP-dependent RNA hel 67.5 2.5 5.4E-05 40.0 1.0 25 163-189 30-54 (434)
124 PRK04837 ATP-dependent RNA hel 67.4 2.5 5.4E-05 40.0 1.0 24 164-189 38-61 (423)
125 PF07724 AAA_2: AAA domain (Cd 66.8 2.1 4.6E-05 35.6 0.4 17 174-190 4-20 (171)
126 TIGR03499 FlhF flagellar biosy 66.2 2.2 4.7E-05 38.4 0.4 17 175-191 196-212 (282)
127 TIGR00614 recQ_fam ATP-depende 66.0 3.2 6.9E-05 40.0 1.4 26 163-190 18-43 (470)
128 PRK13342 recombination factor 66.0 2.6 5.6E-05 40.0 0.8 41 149-190 13-53 (413)
129 PRK04328 hypothetical protein; 65.9 4.9 0.00011 35.3 2.5 26 163-188 10-38 (249)
130 TIGR00635 ruvB Holliday juncti 65.2 2.1 4.6E-05 38.4 0.0 43 147-190 3-47 (305)
131 PF00580 UvrD-helicase: UvrD/R 65.1 2.2 4.7E-05 37.8 0.1 20 172-191 12-31 (315)
132 PRK10590 ATP-dependent RNA hel 64.8 3.3 7.1E-05 39.7 1.3 25 163-189 30-54 (456)
133 KOG0926|consensus 64.6 4.3 9.4E-05 41.8 2.1 18 173-190 271-288 (1172)
134 PRK13851 type IV secretion sys 64.3 2.4 5.2E-05 39.4 0.2 26 163-190 153-179 (344)
135 PRK12723 flagellar biosynthesi 63.9 2.8 6.1E-05 39.7 0.6 18 173-190 174-191 (388)
136 TIGR02237 recomb_radB DNA repa 63.6 4.1 8.9E-05 34.3 1.5 25 166-190 2-29 (209)
137 PLN00020 ribulose bisphosphate 63.4 3.2 6.9E-05 39.3 0.9 52 138-189 109-164 (413)
138 PF13238 AAA_18: AAA domain; P 63.4 3 6.5E-05 31.6 0.6 15 176-190 1-15 (129)
139 KOG2543|consensus 63.1 2.7 5.8E-05 39.7 0.3 35 176-226 33-67 (438)
140 COG1223 Predicted ATPase (AAA+ 62.7 2.9 6.2E-05 37.8 0.4 40 174-213 152-208 (368)
141 PF07728 AAA_5: AAA domain (dy 62.5 2.7 5.8E-05 32.9 0.2 15 176-190 2-16 (139)
142 PRK13764 ATPase; Provisional 62.2 3 6.5E-05 41.7 0.5 18 174-191 258-275 (602)
143 PRK11331 5-methylcytosine-spec 62.1 3.8 8.2E-05 39.6 1.2 28 161-190 184-211 (459)
144 TIGR00348 hsdR type I site-spe 62.1 4.1 8.8E-05 41.3 1.4 28 163-191 249-281 (667)
145 PRK10536 hypothetical protein; 62.0 4.4 9.6E-05 36.2 1.5 40 141-190 52-91 (262)
146 PLN03025 replication factor C 61.2 3.5 7.6E-05 37.5 0.8 16 175-190 36-51 (319)
147 TIGR02788 VirB11 P-type DNA tr 61.2 3.8 8.2E-05 37.3 0.9 27 163-190 135-161 (308)
148 PF06414 Zeta_toxin: Zeta toxi 61.1 3.3 7.2E-05 34.9 0.5 18 173-190 15-32 (199)
149 smart00242 MYSc Myosin. Large 60.6 4.3 9.3E-05 41.2 1.3 21 170-190 89-109 (677)
150 PRK14722 flhF flagellar biosyn 60.2 3.5 7.7E-05 38.8 0.6 17 174-190 138-154 (374)
151 PRK11448 hsdR type I restricti 59.9 2.8 6E-05 45.0 -0.2 26 166-192 427-452 (1123)
152 PHA02653 RNA helicase NPH-II; 59.8 5.6 0.00012 40.4 1.9 25 163-189 171-195 (675)
153 PRK06547 hypothetical protein; 59.4 5.6 0.00012 33.0 1.6 25 166-190 8-32 (172)
154 TIGR01389 recQ ATP-dependent D 59.0 4.9 0.00011 39.9 1.4 26 163-190 20-45 (591)
155 TIGR03877 thermo_KaiC_1 KaiC d 59.0 7.9 0.00017 33.6 2.5 26 163-188 8-36 (237)
156 PLN00206 DEAD-box ATP-dependen 59.0 6.9 0.00015 38.3 2.4 24 164-189 151-174 (518)
157 PF02456 Adeno_IVa2: Adenoviru 58.1 3.3 7.2E-05 38.1 -0.0 15 176-190 90-104 (369)
158 PRK01297 ATP-dependent RNA hel 57.6 5.6 0.00012 38.3 1.5 26 163-190 116-141 (475)
159 cd01384 MYSc_type_XI Myosin mo 57.4 5.4 0.00012 40.5 1.3 21 170-190 85-105 (674)
160 TIGR02881 spore_V_K stage V sp 57.0 4 8.7E-05 36.0 0.3 17 174-190 43-59 (261)
161 PF06048 DUF927: Domain of unk 56.9 5.3 0.00012 35.9 1.1 34 161-195 182-221 (286)
162 PHA02244 ATPase-like protein 56.8 6.4 0.00014 37.1 1.7 20 169-190 117-136 (383)
163 PF03215 Rad17: Rad17 cell cyc 56.6 5 0.00011 39.5 0.9 29 162-190 32-62 (519)
164 PRK04537 ATP-dependent RNA hel 56.3 5.4 0.00012 39.6 1.2 25 164-190 39-63 (572)
165 COG1219 ClpX ATP-dependent pro 56.3 4.7 0.0001 37.4 0.7 15 174-188 98-112 (408)
166 PF05496 RuvB_N: Holliday junc 56.3 7.6 0.00016 34.1 1.9 41 147-188 23-65 (233)
167 PRK06067 flagellar accessory p 56.1 7.1 0.00015 33.6 1.8 27 163-189 12-41 (234)
168 cd01385 MYSc_type_IX Myosin mo 55.9 6.1 0.00013 40.2 1.5 21 170-190 91-111 (692)
169 PRK13341 recombination factor 55.8 4.6 0.0001 41.3 0.6 21 170-190 49-69 (725)
170 PRK11634 ATP-dependent RNA hel 55.8 6.4 0.00014 39.6 1.6 25 164-190 36-60 (629)
171 PF04466 Terminase_3: Phage te 55.5 3.9 8.4E-05 38.5 0.0 18 176-193 5-22 (387)
172 cd01382 MYSc_type_VI Myosin mo 55.5 5.6 0.00012 40.7 1.1 21 170-190 88-108 (717)
173 PRK13767 ATP-dependent helicas 55.2 5.8 0.00013 41.5 1.2 24 165-190 41-64 (876)
174 cd00124 MYSc Myosin motor doma 55.2 6.3 0.00014 40.0 1.5 21 170-190 83-103 (679)
175 cd01378 MYSc_type_I Myosin mot 55.1 6.3 0.00014 40.0 1.4 21 170-190 83-103 (674)
176 cd01383 MYSc_type_VIII Myosin 55.0 6.9 0.00015 39.8 1.7 21 170-190 89-109 (677)
177 KOG0727|consensus 54.7 5 0.00011 36.1 0.6 116 98-213 97-246 (408)
178 cd01377 MYSc_type_II Myosin mo 54.7 6.5 0.00014 40.1 1.4 21 170-190 88-108 (693)
179 cd01387 MYSc_type_XV Myosin mo 54.5 6.7 0.00014 39.9 1.5 21 170-190 84-104 (677)
180 COG2256 MGS1 ATPase related to 54.4 6.6 0.00014 37.3 1.3 37 151-188 27-63 (436)
181 smart00488 DEXDc2 DEAD-like he 54.3 5.1 0.00011 36.2 0.6 37 149-191 9-45 (289)
182 smart00489 DEXDc3 DEAD-like he 54.3 5.1 0.00011 36.2 0.6 37 149-191 9-45 (289)
183 TIGR02640 gas_vesic_GvpN gas v 54.0 6.7 0.00015 34.7 1.3 25 164-190 14-38 (262)
184 KOG0330|consensus 53.9 8.1 0.00018 36.6 1.8 25 164-190 91-115 (476)
185 PRK09361 radB DNA repair and r 53.9 8.7 0.00019 32.8 1.9 28 163-190 10-40 (225)
186 COG4096 HsdR Type I site-speci 53.6 9.6 0.00021 39.3 2.4 30 161-191 174-203 (875)
187 cd01381 MYSc_type_VII Myosin m 53.6 7.3 0.00016 39.5 1.6 21 170-190 83-103 (671)
188 PRK11057 ATP-dependent DNA hel 52.9 8 0.00017 38.7 1.7 25 163-189 32-56 (607)
189 TIGR01618 phage_P_loop phage n 52.8 5.7 0.00012 34.6 0.6 19 173-191 12-30 (220)
190 TIGR02655 circ_KaiC circadian 52.8 10 0.00022 36.8 2.4 26 163-188 8-36 (484)
191 PF06745 KaiC: KaiC; InterPro 52.7 9.2 0.0002 32.7 1.9 26 163-188 6-34 (226)
192 KOG0953|consensus 52.7 6.2 0.00013 39.0 0.9 39 175-213 193-237 (700)
193 KOG0335|consensus 52.6 6.3 0.00014 38.2 0.9 57 168-226 108-187 (482)
194 PRK00440 rfc replication facto 52.4 6 0.00013 35.3 0.7 21 170-190 35-55 (319)
195 cd01380 MYSc_type_V Myosin mot 52.2 7.5 0.00016 39.6 1.4 21 170-190 83-103 (691)
196 cd03274 ABC_SMC4_euk Eukaryoti 52.1 5.3 0.00011 34.3 0.3 13 178-190 30-42 (212)
197 PF10236 DAP3: Mitochondrial r 52.1 6.6 0.00014 35.8 0.9 22 170-191 20-41 (309)
198 COG4962 CpaF Flp pilus assembl 51.3 6.1 0.00013 36.7 0.6 26 164-190 165-190 (355)
199 PRK05580 primosome assembly pr 51.0 5 0.00011 40.7 -0.1 17 174-190 163-179 (679)
200 PF12775 AAA_7: P-loop contain 51.0 6.2 0.00013 35.3 0.6 27 163-190 24-50 (272)
201 TIGR03817 DECH_helic helicase/ 50.9 8.3 0.00018 39.6 1.5 26 163-190 43-68 (742)
202 PRK00131 aroK shikimate kinase 50.8 6.8 0.00015 31.5 0.7 16 175-190 6-21 (175)
203 TIGR03158 cas3_cyano CRISPR-as 50.7 9 0.0002 35.6 1.6 26 165-190 6-31 (357)
204 cd01394 radB RadB. The archaea 50.4 11 0.00024 32.0 2.0 28 163-190 6-36 (218)
205 cd01126 TraG_VirD4 The TraG/Tr 50.3 7.8 0.00017 36.2 1.2 16 176-191 2-17 (384)
206 COG1125 OpuBA ABC-type proline 50.2 4.6 9.9E-05 36.4 -0.4 12 179-190 33-44 (309)
207 PRK05703 flhF flagellar biosyn 50.1 6 0.00013 37.8 0.4 17 175-191 223-239 (424)
208 cd02021 GntK Gluconate kinase 50.0 6.5 0.00014 31.1 0.5 15 176-190 2-16 (150)
209 PF00735 Septin: Septin; Inte 49.8 6.6 0.00014 35.4 0.5 19 171-189 2-20 (281)
210 cd01127 TrwB Bacterial conjuga 49.6 5.9 0.00013 37.6 0.2 17 174-190 43-59 (410)
211 PTZ00110 helicase; Provisional 49.6 8 0.00017 38.1 1.2 23 165-189 161-183 (545)
212 cd01120 RecA-like_NTPases RecA 49.5 6.8 0.00015 30.6 0.5 15 176-190 2-16 (165)
213 PRK04195 replication factor C 49.5 7.5 0.00016 37.6 0.9 28 163-190 28-56 (482)
214 PF05729 NACHT: NACHT domain 49.3 6.9 0.00015 30.9 0.5 15 176-190 3-17 (166)
215 cd01123 Rad51_DMC1_radA Rad51_ 49.2 11 0.00024 32.1 1.9 28 163-190 6-36 (235)
216 PF00931 NB-ARC: NB-ARC domain 49.2 11 0.00023 33.2 1.8 29 162-190 6-36 (287)
217 PF10923 DUF2791: P-loop Domai 49.2 8.3 0.00018 36.9 1.1 27 164-190 40-66 (416)
218 COG1419 FlhF Flagellar GTP-bin 48.7 7.6 0.00016 36.9 0.8 17 174-190 204-220 (407)
219 TIGR00376 DNA helicase, putati 48.7 8.3 0.00018 38.9 1.1 26 165-191 166-191 (637)
220 TIGR02902 spore_lonB ATP-depen 48.4 7.9 0.00017 38.1 0.9 42 141-190 62-103 (531)
221 KOG0348|consensus 48.3 11 0.00024 37.2 1.8 23 164-188 167-189 (708)
222 PRK00080 ruvB Holliday junctio 48.2 7.6 0.00017 35.4 0.7 43 147-190 24-68 (328)
223 TIGR03744 traC_PFL_4706 conjug 47.5 5.3 0.00012 41.9 -0.5 19 172-190 474-492 (893)
224 PRK07261 topology modulation p 47.5 7.7 0.00017 32.0 0.6 15 176-190 3-17 (171)
225 TIGR02746 TraC-F-type type-IV 47.2 6.6 0.00014 40.3 0.1 18 173-190 430-447 (797)
226 PRK10416 signal recognition pa 47.1 8.6 0.00019 35.3 0.9 17 174-190 115-131 (318)
227 COG0467 RAD55 RecA-superfamily 46.6 15 0.00032 32.3 2.2 25 164-188 11-38 (260)
228 KOG0651|consensus 46.5 11 0.00024 34.8 1.5 52 137-188 125-181 (388)
229 PRK15483 type III restriction- 46.4 5.9 0.00013 41.7 -0.3 13 181-193 67-79 (986)
230 PRK06995 flhF flagellar biosyn 46.2 7.4 0.00016 37.9 0.3 17 174-190 257-273 (484)
231 PF13476 AAA_23: AAA domain; P 46.1 8.3 0.00018 31.5 0.6 17 174-190 20-36 (202)
232 PRK01172 ski2-like helicase; P 45.9 11 0.00024 38.0 1.5 24 164-189 30-53 (674)
233 TIGR01359 UMP_CMP_kin_fam UMP- 45.8 8.4 0.00018 31.5 0.6 14 176-189 2-15 (183)
234 cd01386 MYSc_type_XVIII Myosin 45.6 9.9 0.00021 39.2 1.1 21 170-190 83-103 (767)
235 cd01379 MYSc_type_III Myosin m 45.3 9.6 0.00021 38.6 1.0 21 170-190 83-103 (653)
236 cd00464 SK Shikimate kinase (S 45.3 8.6 0.00019 30.3 0.5 16 175-190 1-16 (154)
237 KOG3859|consensus 45.3 11 0.00024 34.3 1.2 29 162-190 30-59 (406)
238 TIGR03819 heli_sec_ATPase heli 45.0 8.6 0.00019 35.7 0.5 29 161-190 167-195 (340)
239 PF13555 AAA_29: P-loop contai 44.6 10 0.00022 26.3 0.7 14 177-190 27-40 (62)
240 PRK11131 ATP-dependent RNA hel 44.5 12 0.00026 40.7 1.6 23 167-190 84-106 (1294)
241 TIGR01313 therm_gnt_kin carboh 44.4 7.5 0.00016 31.3 0.0 13 177-189 2-14 (163)
242 PF13173 AAA_14: AAA domain 44.4 8.8 0.00019 29.8 0.4 16 175-190 4-19 (128)
243 PRK08118 topology modulation p 44.1 9.4 0.0002 31.4 0.6 13 176-188 4-16 (167)
244 TIGR02903 spore_lon_C ATP-depe 44.0 11 0.00024 37.8 1.2 42 141-190 151-192 (615)
245 PF03193 DUF258: Protein of un 43.7 15 0.00032 30.4 1.7 26 163-190 27-52 (161)
246 COG0419 SbcC ATPase involved i 43.7 20 0.00043 37.7 3.0 32 177-210 29-67 (908)
247 cd01428 ADK Adenylate kinase ( 43.4 9.7 0.00021 31.3 0.6 15 176-190 2-16 (194)
248 KOG0780|consensus 43.1 13 0.00029 35.3 1.5 73 153-226 76-167 (483)
249 TIGR03881 KaiC_arch_4 KaiC dom 43.1 15 0.00032 31.4 1.7 28 163-190 7-37 (229)
250 PRK06696 uridine kinase; Valid 43.1 14 0.0003 31.7 1.5 28 162-189 8-38 (223)
251 cd01850 CDC_Septin CDC/Septin. 43.0 11 0.00023 33.8 0.8 21 170-190 1-21 (276)
252 PRK10917 ATP-dependent DNA hel 42.8 11 0.00023 38.3 0.9 39 148-190 261-299 (681)
253 PRK06217 hypothetical protein; 42.6 9.8 0.00021 31.5 0.5 14 176-189 4-17 (183)
254 PF02534 T4SS-DNA_transf: Type 42.4 17 0.00036 34.8 2.1 17 174-190 45-61 (469)
255 COG0630 VirB11 Type IV secreto 42.4 8.4 0.00018 35.3 0.0 17 175-191 145-161 (312)
256 PF08477 Miro: Miro-like prote 42.1 11 0.00024 28.1 0.7 15 176-190 2-16 (119)
257 CHL00181 cbbX CbbX; Provisiona 42.1 9.9 0.00021 34.3 0.5 15 176-190 62-76 (287)
258 PLN03137 ATP-dependent DNA hel 42.1 15 0.00031 39.6 1.7 25 163-189 467-491 (1195)
259 cd01393 recA_like RecA is a b 42.0 19 0.00041 30.5 2.2 28 163-190 6-36 (226)
260 PRK08233 hypothetical protein; 41.7 10 0.00022 30.7 0.5 15 176-190 6-20 (182)
261 TIGR01241 FtsH_fam ATP-depende 41.7 9 0.0002 37.2 0.1 16 175-190 90-105 (495)
262 PF10412 TrwB_AAD_bind: Type I 41.6 8.9 0.00019 36.1 0.1 15 176-190 18-32 (386)
263 KOG0340|consensus 41.5 14 0.0003 34.7 1.3 41 163-205 36-82 (442)
264 TIGR01650 PD_CobS cobaltochela 41.5 15 0.00032 34.0 1.5 43 146-190 38-81 (327)
265 COG3829 RocR Transcriptional r 41.3 11 0.00024 37.2 0.6 44 137-186 238-281 (560)
266 cd02025 PanK Pantothenate kina 41.2 7 0.00015 33.7 -0.6 11 180-190 6-16 (220)
267 cd01124 KaiC KaiC is a circadi 41.1 12 0.00026 30.5 0.7 15 176-190 2-16 (187)
268 cd02020 CMPK Cytidine monophos 40.9 12 0.00027 29.0 0.8 14 176-189 2-15 (147)
269 PF00025 Arf: ADP-ribosylation 40.9 19 0.00042 29.5 2.0 28 163-190 3-31 (175)
270 COG1131 CcmA ABC-type multidru 40.9 9.4 0.0002 34.5 0.1 12 179-190 37-48 (293)
271 TIGR02880 cbbX_cfxQ probable R 40.9 11 0.00023 33.9 0.5 16 175-190 60-75 (284)
272 TIGR02621 cas3_GSU0051 CRISPR- 40.8 15 0.00032 38.4 1.5 27 163-190 22-48 (844)
273 KOG1803|consensus 40.6 11 0.00024 37.5 0.6 17 175-191 203-219 (649)
274 TIGR00929 VirB4_CagE type IV s 40.5 8.6 0.00019 39.3 -0.2 18 173-190 434-451 (785)
275 PHA01747 putative ATP-dependen 40.2 14 0.00031 34.9 1.1 30 161-190 178-207 (425)
276 CHL00081 chlI Mg-protoporyphyr 39.9 5.8 0.00012 37.0 -1.5 44 139-190 12-55 (350)
277 PRK00771 signal recognition pa 39.9 13 0.00027 35.9 0.8 18 173-190 95-112 (437)
278 cd01983 Fer4_NifH The Fer4_Nif 39.9 11 0.00024 26.5 0.3 15 176-190 2-16 (99)
279 PRK04040 adenylate kinase; Pro 39.8 12 0.00027 31.4 0.7 16 175-190 4-19 (188)
280 TIGR02236 recomb_radA DNA repa 39.7 20 0.00043 32.4 2.0 27 163-189 82-111 (310)
281 PRK12726 flagellar biosynthesi 39.7 10 0.00023 36.0 0.2 17 175-191 208-224 (407)
282 TIGR00064 ftsY signal recognit 39.6 13 0.00028 33.3 0.7 17 174-190 73-89 (272)
283 PF14532 Sigma54_activ_2: Sigm 39.3 11 0.00024 29.6 0.3 20 171-190 19-38 (138)
284 TIGR02173 cyt_kin_arch cytidyl 39.3 12 0.00026 30.0 0.5 15 176-190 3-17 (171)
285 PRK11889 flhF flagellar biosyn 39.2 11 0.00023 36.2 0.2 17 174-190 242-258 (436)
286 TIGR02322 phosphon_PhnN phosph 38.7 11 0.00024 30.8 0.2 16 175-190 3-18 (179)
287 PRK14723 flhF flagellar biosyn 38.7 12 0.00027 38.5 0.6 17 174-190 186-202 (767)
288 PRK14974 cell division protein 38.6 14 0.00031 34.2 0.9 18 173-190 140-157 (336)
289 COG1196 Smc Chromosome segrega 38.4 18 0.0004 39.0 1.9 53 158-213 12-70 (1163)
290 PRK14721 flhF flagellar biosyn 38.1 13 0.00028 35.6 0.6 17 174-190 192-208 (420)
291 COG5019 CDC3 Septin family pro 38.1 19 0.00042 33.7 1.7 24 170-193 20-46 (373)
292 PHA02624 large T antigen; Prov 38.0 16 0.00034 36.8 1.1 26 165-190 421-448 (647)
293 TIGR02767 TraG-Ti Ti-type conj 38.0 19 0.00041 36.3 1.7 25 174-206 212-236 (623)
294 PRK04301 radA DNA repair and r 37.9 21 0.00046 32.4 2.0 28 163-190 89-119 (317)
295 TIGR01360 aden_kin_iso1 adenyl 37.9 14 0.00029 30.2 0.6 16 175-190 5-20 (188)
296 COG1126 GlnQ ABC-type polar am 37.8 16 0.00034 32.1 1.0 13 178-190 33-45 (240)
297 COG0396 sufC Cysteine desulfur 37.8 17 0.00037 32.1 1.3 28 167-194 18-54 (251)
298 PF04548 AIG1: AIG1 family; I 37.8 13 0.00027 31.8 0.4 16 175-190 2-17 (212)
299 PF00158 Sigma54_activat: Sigm 37.7 15 0.00033 30.3 0.8 20 170-189 19-38 (168)
300 PF02367 UPF0079: Uncharacteri 37.5 16 0.00035 28.8 1.0 24 167-191 10-33 (123)
301 PRK14729 miaA tRNA delta(2)-is 37.2 16 0.00034 33.4 0.9 14 175-188 6-19 (300)
302 PRK09270 nucleoside triphospha 37.1 16 0.00035 31.4 1.0 20 171-190 31-50 (229)
303 PTZ00014 myosin-A; Provisional 36.9 17 0.00037 37.8 1.2 21 170-190 180-200 (821)
304 cd02023 UMPK Uridine monophosp 36.9 12 0.00025 31.3 0.0 14 177-190 3-16 (198)
305 PF00485 PRK: Phosphoribulokin 36.7 14 0.00031 30.8 0.6 15 176-190 2-16 (194)
306 PRK14531 adenylate kinase; Pro 36.6 14 0.00031 30.5 0.6 15 175-189 4-18 (183)
307 PRK13873 conjugal transfer ATP 36.6 12 0.00026 38.8 0.1 16 175-190 443-458 (811)
308 PRK13531 regulatory ATPase Rav 36.3 15 0.00033 35.8 0.8 26 163-190 31-56 (498)
309 PRK05342 clpX ATP-dependent pr 36.3 15 0.00032 35.1 0.6 17 174-190 109-125 (412)
310 PRK09401 reverse gyrase; Revie 36.2 21 0.00045 38.7 1.8 24 163-188 87-110 (1176)
311 KOG0745|consensus 36.1 16 0.00035 35.3 0.9 18 169-188 224-241 (564)
312 cd00820 PEPCK_HprK Phosphoenol 36.1 14 0.00031 28.4 0.5 15 176-190 18-32 (107)
313 PRK06762 hypothetical protein; 35.6 16 0.00034 29.4 0.7 14 175-188 4-17 (166)
314 COG1618 Predicted nucleotide k 35.4 52 0.0011 27.6 3.6 16 175-190 7-22 (179)
315 TIGR01967 DEAH_box_HrpA ATP-de 34.9 21 0.00047 38.9 1.7 23 167-190 77-99 (1283)
316 PRK10865 protein disaggregatio 34.7 16 0.00035 38.2 0.7 17 174-190 599-615 (857)
317 PF05673 DUF815: Protein of un 34.6 19 0.0004 32.1 1.0 26 166-191 44-70 (249)
318 PRK13822 conjugal transfer cou 34.6 23 0.00051 35.8 1.8 17 174-190 225-241 (641)
319 PRK02362 ski2-like helicase; P 34.5 20 0.00044 36.6 1.4 21 168-190 36-56 (737)
320 COG1122 CbiO ABC-type cobalt t 34.5 18 0.00039 31.7 0.9 16 175-190 32-47 (235)
321 PRK14532 adenylate kinase; Pro 34.4 17 0.00036 30.0 0.6 14 176-189 3-16 (188)
322 PF02463 SMC_N: RecF/RecN/SMC 34.4 18 0.0004 30.5 0.9 15 175-189 26-40 (220)
323 KOG0987|consensus 34.0 25 0.00055 34.7 1.9 36 150-190 119-154 (540)
324 TIGR00231 small_GTP small GTP- 34.0 14 0.0003 28.1 0.0 15 176-190 4-18 (161)
325 TIGR01587 cas3_core CRISPR-ass 33.9 19 0.00041 32.9 0.9 14 176-189 2-15 (358)
326 KOG0635|consensus 33.9 40 0.00086 28.1 2.7 29 166-194 24-69 (207)
327 PF12774 AAA_6: Hydrolytic ATP 33.8 14 0.00031 32.3 0.1 14 177-190 36-49 (231)
328 TIGR03878 thermo_KaiC_2 KaiC d 33.8 24 0.00052 31.2 1.6 16 173-188 36-51 (259)
329 PRK03839 putative kinase; Prov 33.7 16 0.00035 29.9 0.5 14 176-189 3-16 (180)
330 TIGR00643 recG ATP-dependent D 33.7 21 0.00045 35.9 1.2 40 147-190 234-273 (630)
331 COG4185 Uncharacterized protei 33.6 23 0.00051 29.7 1.3 15 175-190 5-19 (187)
332 PRK13721 conjugal transfer ATP 33.6 15 0.00032 38.3 0.2 18 173-190 449-466 (844)
333 TIGR03263 guanyl_kin guanylate 33.6 20 0.00042 29.2 0.9 16 175-190 3-18 (180)
334 cd00983 recA RecA is a bacter 33.6 33 0.00071 31.7 2.4 30 161-190 39-72 (325)
335 PRK13853 type IV secretion sys 33.5 14 0.00031 38.1 0.1 18 173-190 426-443 (789)
336 KOG1547|consensus 33.5 28 0.0006 31.2 1.9 30 159-188 31-61 (336)
337 PRK12724 flagellar biosynthesi 33.4 16 0.00034 35.1 0.3 17 174-190 224-240 (432)
338 cd02027 APSK Adenosine 5'-phos 33.4 17 0.00036 29.2 0.4 13 176-188 2-14 (149)
339 PRK11664 ATP-dependent RNA hel 33.4 21 0.00046 37.1 1.3 26 163-190 12-37 (812)
340 TIGR03689 pup_AAA proteasome A 33.4 17 0.00036 35.8 0.5 16 175-190 218-233 (512)
341 KOG1532|consensus 33.3 20 0.00044 32.7 1.0 19 172-190 18-36 (366)
342 CHL00195 ycf46 Ycf46; Provisio 33.3 15 0.00033 35.8 0.2 17 174-190 260-276 (489)
343 KOG0729|consensus 33.0 21 0.00046 32.5 1.0 40 175-214 213-269 (435)
344 COG0552 FtsY Signal recognitio 32.8 24 0.00053 32.7 1.4 20 171-190 137-156 (340)
345 PRK15429 formate hydrogenlyase 32.6 14 0.00031 37.4 -0.1 21 170-190 396-416 (686)
346 cd03240 ABC_Rad50 The catalyti 32.5 21 0.00046 30.3 0.9 16 175-190 24-39 (204)
347 TIGR00602 rad24 checkpoint pro 32.5 14 0.00031 37.3 -0.2 16 175-190 112-127 (637)
348 PRK09302 circadian clock prote 32.4 27 0.00059 33.9 1.8 27 163-189 18-47 (509)
349 PTZ00301 uridine kinase; Provi 32.3 14 0.0003 31.8 -0.3 11 179-189 9-19 (210)
350 COG3842 PotA ABC-type spermidi 32.2 16 0.00034 34.2 0.1 20 169-190 29-48 (352)
351 PRK13891 conjugal transfer pro 32.1 17 0.00038 37.9 0.4 18 173-190 488-505 (852)
352 PRK11545 gntK gluconate kinase 31.9 12 0.00025 30.6 -0.7 12 179-190 1-12 (163)
353 TIGR00382 clpX endopeptidase C 31.9 19 0.00041 34.4 0.6 17 174-190 117-133 (413)
354 KOG0652|consensus 31.8 21 0.00044 32.4 0.8 14 175-188 207-220 (424)
355 PF01745 IPT: Isopentenyl tran 31.7 18 0.0004 31.6 0.5 15 176-190 4-18 (233)
356 PRK14961 DNA polymerase III su 31.7 17 0.00037 33.8 0.3 18 173-190 38-55 (363)
357 TIGR00235 udk uridine kinase. 31.7 19 0.0004 30.5 0.5 16 175-190 8-23 (207)
358 PRK14970 DNA polymerase III su 31.4 21 0.00046 33.0 0.8 25 166-190 31-56 (367)
359 PRK14962 DNA polymerase III su 31.3 22 0.00047 34.5 0.9 17 174-190 37-53 (472)
360 TIGR03238 dnd_assoc_3 dnd syst 31.3 23 0.00049 34.7 1.0 17 175-191 34-50 (504)
361 TIGR02238 recomb_DMC1 meiotic 31.2 39 0.00085 30.9 2.5 28 163-190 83-113 (313)
362 PTZ00035 Rad51 protein; Provis 31.2 36 0.00079 31.5 2.3 30 161-190 103-135 (337)
363 TIGR01817 nifA Nif-specific re 31.1 16 0.00035 35.7 0.0 45 140-190 192-236 (534)
364 cd00071 GMPK Guanosine monopho 31.1 21 0.00046 28.2 0.7 13 177-189 3-15 (137)
365 PRK11034 clpA ATP-dependent Cl 31.0 25 0.00054 36.3 1.4 18 173-190 488-505 (758)
366 COG0324 MiaA tRNA delta(2)-iso 30.8 24 0.00051 32.4 1.0 16 175-190 5-20 (308)
367 cd03279 ABC_sbcCD SbcCD and ot 30.8 19 0.00041 30.6 0.4 16 175-190 30-45 (213)
368 PRK14701 reverse gyrase; Provi 30.7 30 0.00064 38.9 1.9 24 163-188 86-109 (1638)
369 PRK12727 flagellar biosynthesi 30.7 18 0.0004 35.8 0.3 16 175-190 352-367 (559)
370 KOG2035|consensus 30.6 31 0.00067 31.5 1.7 28 163-190 23-51 (351)
371 TIGR01074 rep ATP-dependent DN 30.6 20 0.00044 36.0 0.6 19 174-192 15-33 (664)
372 TIGR01054 rgy reverse gyrase. 30.6 29 0.00062 37.7 1.8 25 163-189 85-109 (1171)
373 COG1117 PstB ABC-type phosphat 30.5 38 0.00083 29.8 2.2 39 175-224 34-73 (253)
374 PRK09354 recA recombinase A; P 30.5 35 0.00075 31.9 2.1 30 161-190 44-77 (349)
375 TIGR01547 phage_term_2 phage t 30.5 19 0.00041 33.7 0.3 16 176-191 4-19 (396)
376 PRK10820 DNA-binding transcrip 30.5 17 0.00037 35.6 0.0 47 138-190 198-244 (520)
377 TIGR02397 dnaX_nterm DNA polym 30.4 23 0.00049 32.3 0.8 22 169-190 31-53 (355)
378 PRK13889 conjugal transfer rel 30.4 25 0.00054 37.4 1.2 26 164-190 354-379 (988)
379 TIGR02639 ClpA ATP-dependent C 30.4 24 0.00051 36.2 1.1 17 174-190 485-501 (731)
380 PRK00300 gmk guanylate kinase; 30.3 24 0.00053 29.4 1.0 16 175-190 7-22 (205)
381 TIGR03880 KaiC_arch_3 KaiC dom 30.1 33 0.00072 29.2 1.8 25 165-189 5-32 (224)
382 cd02019 NK Nucleoside/nucleoti 30.1 24 0.00051 24.3 0.7 14 177-190 3-16 (69)
383 KOG0924|consensus 30.1 27 0.00059 35.7 1.4 20 171-190 369-388 (1042)
384 TIGR02655 circ_KaiC circadian 30.0 39 0.00084 32.8 2.4 27 163-189 250-279 (484)
385 KOG1970|consensus 29.9 25 0.00055 34.9 1.1 19 171-190 109-127 (634)
386 TIGR03117 cas_csf4 CRISPR-asso 29.8 19 0.0004 36.4 0.2 17 174-190 17-33 (636)
387 COG0513 SrmB Superfamily II DN 29.8 27 0.00058 34.2 1.3 26 163-190 58-83 (513)
388 PRK14530 adenylate kinase; Pro 29.7 23 0.00049 30.1 0.7 14 176-189 6-19 (215)
389 TIGR01351 adk adenylate kinase 29.7 22 0.00047 30.1 0.6 13 176-188 2-14 (210)
390 cd03242 ABC_RecF RecF is a rec 29.6 19 0.00042 31.9 0.2 14 177-190 25-38 (270)
391 COG1204 Superfamily II helicas 29.6 26 0.00056 36.2 1.1 20 168-189 44-63 (766)
392 COG1136 SalX ABC-type antimicr 29.5 23 0.0005 31.0 0.7 14 177-190 35-48 (226)
393 KOG0739|consensus 29.4 23 0.00049 32.8 0.6 44 146-189 135-182 (439)
394 PRK13850 type IV secretion sys 29.3 40 0.00087 34.3 2.5 28 171-206 137-164 (670)
395 PRK14527 adenylate kinase; Pro 29.3 26 0.00056 29.1 1.0 16 174-189 7-22 (191)
396 TIGR00595 priA primosomal prot 29.3 18 0.00039 35.4 -0.0 14 178-191 2-15 (505)
397 TIGR01243 CDC48 AAA family ATP 29.2 23 0.0005 36.2 0.8 16 175-190 214-229 (733)
398 PRK00091 miaA tRNA delta(2)-is 29.2 24 0.00052 32.3 0.8 15 175-189 6-20 (307)
399 PF01926 MMR_HSR1: 50S ribosom 29.1 26 0.00055 26.3 0.8 15 176-190 2-16 (116)
400 PRK13880 conjugal transfer cou 29.0 31 0.00066 34.9 1.6 17 174-190 176-192 (636)
401 TIGR03783 Bac_Flav_CT_G Bacter 28.9 19 0.0004 37.6 0.0 18 173-190 438-455 (829)
402 PRK13830 conjugal transfer pro 28.8 18 0.00039 37.6 -0.1 19 172-190 455-473 (818)
403 TIGR02759 TraD_Ftype type IV c 28.8 19 0.00042 35.7 0.1 15 176-190 179-193 (566)
404 TIGR00390 hslU ATP-dependent p 28.7 23 0.0005 34.1 0.6 17 174-190 48-64 (441)
405 PRK10689 transcription-repair 28.7 24 0.00052 38.1 0.8 38 148-189 600-637 (1147)
406 KOG0925|consensus 28.6 33 0.00071 33.7 1.6 20 171-190 60-79 (699)
407 PRK10867 signal recognition pa 28.6 27 0.00059 33.6 1.1 18 173-190 100-117 (433)
408 PLN03187 meiotic recombination 28.6 42 0.00091 31.2 2.3 28 161-188 111-141 (344)
409 PF14553 YqbF: YqbF, hypotheti 28.4 25 0.00055 22.5 0.6 9 185-193 3-11 (43)
410 TIGR02688 conserved hypothetic 28.4 22 0.00048 34.2 0.4 20 170-191 208-227 (449)
411 COG1162 Predicted GTPases [Gen 28.4 33 0.00072 31.3 1.5 26 163-190 156-181 (301)
412 TIGR00174 miaA tRNA isopenteny 28.4 25 0.00055 31.8 0.8 15 176-190 2-16 (287)
413 PRK05057 aroK shikimate kinase 28.3 28 0.0006 28.7 0.9 16 175-190 6-21 (172)
414 cd02028 UMPK_like Uridine mono 28.2 23 0.0005 29.4 0.5 15 176-190 2-16 (179)
415 COG0610 Type I site-specific r 28.1 15 0.00033 38.9 -0.8 13 179-191 279-291 (962)
416 TIGR00554 panK_bact pantothena 28.0 16 0.00034 33.2 -0.7 16 175-190 64-79 (290)
417 PF05872 DUF853: Bacterial pro 28.0 22 0.00048 34.5 0.4 12 179-190 25-36 (502)
418 COG3839 MalK ABC-type sugar tr 28.0 21 0.00045 33.2 0.1 13 178-190 34-46 (338)
419 COG1198 PriA Primosomal protei 28.0 23 0.0005 36.4 0.5 37 171-207 215-265 (730)
420 PRK14950 DNA polymerase III su 27.9 22 0.00047 35.4 0.3 28 163-190 26-55 (585)
421 COG0606 Predicted ATPase with 27.8 26 0.00057 34.1 0.8 28 170-202 197-224 (490)
422 TIGR02239 recomb_RAD51 DNA rep 27.8 46 0.001 30.4 2.4 28 163-190 83-113 (316)
423 KOG0344|consensus 27.7 28 0.00061 34.5 1.0 26 163-190 165-190 (593)
424 PF05707 Zot: Zonular occluden 27.7 23 0.0005 29.6 0.4 14 177-190 4-17 (193)
425 PHA02530 pseT polynucleotide k 27.6 26 0.00055 31.2 0.7 15 175-189 4-18 (300)
426 KOG0742|consensus 27.6 28 0.00061 33.5 0.9 13 175-187 386-398 (630)
427 COG3587 Restriction endonuclea 27.5 36 0.00077 35.5 1.7 18 171-190 74-91 (985)
428 cd03272 ABC_SMC3_euk Eukaryoti 27.4 24 0.00053 30.3 0.5 13 178-190 28-40 (243)
429 PRK06851 hypothetical protein; 27.4 42 0.00091 31.6 2.1 28 163-190 20-47 (367)
430 COG3598 RepA RecA-family ATPas 27.3 42 0.0009 31.4 1.9 31 159-191 76-107 (402)
431 PRK06645 DNA polymerase III su 27.3 23 0.00051 34.7 0.4 22 169-190 38-60 (507)
432 PHA02774 E1; Provisional 27.3 33 0.00072 34.3 1.4 25 165-189 424-450 (613)
433 PRK00279 adk adenylate kinase; 27.3 28 0.0006 29.6 0.8 13 176-188 3-15 (215)
434 cd03115 SRP The signal recogni 27.2 24 0.00051 28.7 0.3 15 176-190 3-17 (173)
435 PRK10078 ribose 1,5-bisphospho 27.2 29 0.00062 28.7 0.9 15 176-190 5-19 (186)
436 TIGR00959 ffh signal recogniti 27.1 29 0.00063 33.3 1.0 18 173-190 99-116 (428)
437 PRK05416 glmZ(sRNA)-inactivati 27.0 21 0.00046 32.3 0.0 16 175-190 8-23 (288)
438 PF13304 AAA_21: AAA domain; P 27.0 21 0.00045 29.4 0.0 12 179-190 5-16 (303)
439 PRK13946 shikimate kinase; Pro 26.9 26 0.00057 29.0 0.6 16 175-190 12-27 (184)
440 cd00544 CobU Adenosylcobinamid 26.8 29 0.00062 28.7 0.8 13 176-188 2-14 (169)
441 KOG0735|consensus 26.8 26 0.00057 36.0 0.6 17 174-190 702-718 (952)
442 TIGR01243 CDC48 AAA family ATP 26.7 27 0.00059 35.7 0.7 16 175-190 489-504 (733)
443 PRK06731 flhF flagellar biosyn 26.7 20 0.00043 32.2 -0.2 17 174-190 76-92 (270)
444 PF00005 ABC_tran: ABC transpo 26.7 32 0.00069 26.4 1.0 15 176-190 14-28 (137)
445 TIGR01425 SRP54_euk signal rec 26.6 28 0.00061 33.4 0.8 18 173-190 100-117 (429)
446 TIGR03574 selen_PSTK L-seryl-t 26.6 26 0.00055 30.5 0.5 15 176-190 2-16 (249)
447 PLN02165 adenylate isopentenyl 26.5 27 0.00059 32.4 0.6 16 175-190 45-60 (334)
448 PRK03731 aroL shikimate kinase 26.4 27 0.00059 28.2 0.6 16 175-190 4-19 (171)
449 TIGR00176 mobB molybdopterin-g 26.4 22 0.00048 28.9 0.1 13 178-190 4-16 (155)
450 cd01853 Toc34_like Toc34-like 26.1 27 0.00058 30.9 0.5 19 172-190 30-48 (249)
451 KOG0922|consensus 26.1 37 0.0008 34.3 1.5 18 173-190 66-83 (674)
452 PRK00254 ski2-like helicase; P 26.0 30 0.00065 35.3 0.9 21 168-190 36-56 (720)
453 TIGR03345 VI_ClpV1 type VI sec 26.0 36 0.00078 35.6 1.5 17 174-190 597-613 (852)
454 TIGR00618 sbcc exonuclease Sbc 25.9 61 0.0013 34.6 3.2 21 174-194 27-54 (1042)
455 PRK15424 propionate catabolism 25.9 24 0.00053 34.8 0.2 21 169-189 238-258 (538)
456 PHA02558 uvsW UvsW helicase; P 25.8 40 0.00086 32.8 1.7 25 164-190 122-146 (501)
457 TIGR01970 DEAH_box_HrpB ATP-de 25.8 30 0.00064 36.1 0.8 17 174-190 18-34 (819)
458 PRK02496 adk adenylate kinase; 25.8 31 0.00067 28.3 0.8 14 176-189 4-17 (184)
459 TIGR02768 TraA_Ti Ti-type conj 25.7 33 0.00072 35.3 1.2 26 165-191 361-386 (744)
460 TIGR02329 propionate_PrpR prop 25.7 23 0.00049 34.9 -0.0 22 169-190 231-252 (526)
461 PRK09825 idnK D-gluconate kina 25.6 29 0.00064 28.7 0.6 16 175-190 5-20 (176)
462 PRK05480 uridine/cytidine kina 25.6 36 0.00078 28.6 1.2 16 175-190 8-23 (209)
463 TIGR01613 primase_Cterm phage/ 25.5 21 0.00046 32.2 -0.3 27 164-190 64-93 (304)
464 PRK05800 cobU adenosylcobinami 25.5 31 0.00066 28.5 0.7 14 175-188 3-16 (170)
465 PRK05541 adenylylsulfate kinas 25.5 32 0.0007 28.0 0.9 16 175-190 9-24 (176)
466 cd03239 ABC_SMC_head The struc 25.4 30 0.00064 28.7 0.6 14 177-190 26-39 (178)
467 PRK08533 flagellar accessory p 25.1 32 0.00069 29.8 0.8 16 174-189 25-40 (230)
468 PF13481 AAA_25: AAA domain; P 25.1 30 0.00065 28.4 0.6 16 175-190 34-49 (193)
469 PRK14528 adenylate kinase; Pro 25.1 30 0.00064 28.8 0.6 15 176-190 4-18 (186)
470 PLN02200 adenylate kinase fami 25.1 31 0.00068 30.0 0.8 16 174-189 44-59 (234)
471 PRK14955 DNA polymerase III su 24.9 36 0.00078 32.1 1.1 26 164-189 27-54 (397)
472 TIGR00763 lon ATP-dependent pr 24.9 22 0.00048 36.7 -0.3 16 175-190 349-364 (775)
473 PRK14951 DNA polymerase III su 24.8 28 0.0006 35.1 0.4 17 174-190 39-55 (618)
474 TIGR00580 mfd transcription-re 24.7 34 0.00073 36.2 1.0 20 171-190 470-489 (926)
475 PRK13949 shikimate kinase; Pro 24.7 33 0.00072 28.1 0.8 16 175-190 3-18 (169)
476 COG0563 Adk Adenylate kinase a 24.7 32 0.00069 28.8 0.7 13 176-188 3-15 (178)
477 PRK11823 DNA repair protein Ra 24.6 46 0.001 32.0 1.8 28 163-190 67-97 (446)
478 COG1643 HrpA HrpA-like helicas 24.5 39 0.00085 35.3 1.4 25 165-190 58-82 (845)
479 PRK04182 cytidylate kinase; Pr 24.5 32 0.0007 27.6 0.7 13 176-188 3-15 (180)
480 smart00763 AAA_PrkA PrkA AAA d 24.4 48 0.001 31.1 1.9 46 138-188 43-93 (361)
481 cd00227 CPT Chloramphenicol (C 24.4 33 0.00071 28.0 0.7 15 175-189 4-18 (175)
482 PRK07667 uridine kinase; Provi 24.2 40 0.00087 28.2 1.2 18 171-188 15-32 (193)
483 KOG0328|consensus 24.1 55 0.0012 30.0 2.1 25 164-190 57-81 (400)
484 PRK13909 putative recombinatio 23.9 22 0.00049 37.3 -0.5 11 181-191 6-16 (910)
485 CHL00176 ftsH cell division pr 23.9 31 0.00067 34.9 0.5 16 175-190 218-233 (638)
486 PF09439 SRPRB: Signal recogni 23.9 36 0.00078 28.7 0.9 14 175-188 5-18 (181)
487 PRK05201 hslU ATP-dependent pr 23.9 30 0.00066 33.3 0.4 15 174-188 51-65 (443)
488 cd04139 RalA_RalB RalA/RalB su 23.9 34 0.00073 26.7 0.7 15 176-190 3-17 (164)
489 PRK14964 DNA polymerase III su 23.9 32 0.00069 33.7 0.6 27 164-190 24-52 (491)
490 TIGR02012 tigrfam_recA protein 23.9 52 0.0011 30.3 2.0 29 162-190 40-72 (321)
491 PRK14956 DNA polymerase III su 23.7 31 0.00068 33.6 0.5 16 175-190 42-57 (484)
492 PF13166 AAA_13: AAA domain 23.7 40 0.00087 34.1 1.3 13 176-188 19-31 (712)
493 cd01860 Rab5_related Rab5-rela 23.7 40 0.00086 26.4 1.0 16 175-190 3-18 (163)
494 COG1118 CysA ABC-type sulfate/ 23.6 24 0.00052 32.6 -0.3 13 178-190 33-45 (345)
495 PLN03186 DNA repair protein RA 23.6 63 0.0014 30.0 2.5 29 162-190 109-140 (342)
496 PF03969 AFG1_ATPase: AFG1-lik 23.6 31 0.00067 32.3 0.4 16 175-190 64-79 (362)
497 cd01121 Sms Sms (bacterial rad 23.6 41 0.00088 31.6 1.2 28 163-190 69-99 (372)
498 TIGR01447 recD exodeoxyribonuc 23.5 28 0.00062 34.8 0.2 24 165-190 154-177 (586)
499 TIGR02639 ClpA ATP-dependent C 23.4 35 0.00076 34.9 0.8 40 148-191 182-221 (731)
500 cd02022 DPCK Dephospho-coenzym 23.4 32 0.00069 28.3 0.5 15 176-190 2-16 (179)
No 1
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=9.8e-42 Score=313.65 Aligned_cols=164 Identities=23% Similarity=0.298 Sum_probs=148.2
Q ss_pred CeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC------------CCceeeeeceeeCCCCCcchhhcccchhhH
Q psy17370 99 RMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN------------AKSYTFKLDHCLGQDTDQTSVFTIIAQPLL 165 (262)
Q Consensus 99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~------------~~~~~f~FD~vf~~~~~q~~vy~~~~~plv 165 (262)
+|+|+|||||++..|.. +...+|.+.++...+..+.. ...+.|.||+||+++++|++||+.+++|+|
T Consensus 1 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vf~~~~~plv 80 (338)
T cd01370 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSFDRVFDETSTQEEVYENTTKPLV 80 (338)
T ss_pred CeEEEEEcCCCChhhhhcCCceEEEEcCCCEEEEcCCcccccccchhcccCCceEEEeccccCCCCCHHHHHHHHHHHHH
Confidence 59999999999999876 67788888877655544432 146899999999999999999999999999
Q ss_pred hhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC---CCc
Q psy17370 166 DAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC---GSW 235 (262)
Q Consensus 166 ~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~---~~l 235 (262)
+.+++|+|+||||||||||||||||+|+..++|||||++++||..++. ..+.|+|||+||| ++|||. ..|
T Consensus 81 ~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Giipr~~~~LF~~i~~~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l 160 (338)
T cd01370 81 DGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPL 160 (338)
T ss_pred HHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCchHHHHHHHHHHhhhhcccCceEEEEEEEEEEECCEEEECCCCCCCCc
Confidence 999999999999999999999999999999999999999999998864 4689999999999 999995 579
Q ss_pred eeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 236 RFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 236 ~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
+|++|.++++++.|++++.|.+.+|++
T Consensus 161 ~i~ed~~~~~~v~gl~~~~v~s~~e~~ 187 (338)
T cd01370 161 ELREDPNQGIVVAGLTEHQPKSAEEIL 187 (338)
T ss_pred eEEEcCCCCEEeCCcEEEEeCCHHHHH
Confidence 999999999999999999999999975
No 2
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=2.1e-41 Score=312.15 Aligned_cols=162 Identities=26% Similarity=0.326 Sum_probs=146.0
Q ss_pred CeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC------------CCceeeeeceeeCCCCCcchhhcccchhhH
Q psy17370 99 RMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN------------AKSYTFKLDHCLGQDTDQTSVFTIIAQPLL 165 (262)
Q Consensus 99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~------------~~~~~f~FD~vf~~~~~q~~vy~~~~~plv 165 (262)
+|+|+||+||++..|.. .+..+|.+.++...+...+. ...+.|.||+||+++++|++||+.++.|+|
T Consensus 2 ~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~f~Fd~vf~~~~tq~~vy~~~~~p~v 81 (345)
T cd01368 2 PVKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKVFGPNTTQKEFFEGTALPLV 81 (345)
T ss_pred CEEEEEEeCcCCchhhccCCCceEEEcCCCEEEEeCCccccccccccccCCCceEeecCeEECCCCCHHHHHHHHHHHHH
Confidence 79999999999999877 66777777766554433321 257899999999999999999999999999
Q ss_pred hhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCccceEEEEEEEEEE---EEecCCC---------
Q psy17370 166 DAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVI---AVDFGCG--------- 233 (262)
Q Consensus 166 ~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~~~~~~~vS~~EIy---l~Dll~~--------- 233 (262)
+.+++|+|+||||||||||||||||+|+..++|||||++++||..+.+ +.|+|||+||| |+|||..
T Consensus 82 ~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gli~r~~~~lF~~~~~--~~v~~S~~EIyne~v~DLL~~~~~~~~~~~ 159 (345)
T cd01368 82 QDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDVIFNSIGG--YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQ 159 (345)
T ss_pred HHHhCCCceEEEEeCCCCCCCeEEecCCCCCCchHHHHHHHHHHHHHh--eeEEEEEEEEeCCEeEeCCCCccccccCCC
Confidence 999999999999999999999999999999999999999999999877 99999999999 9999953
Q ss_pred CceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 234 SWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 234 ~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
.|.|++|.+++++|.|++++.|.+.+|++
T Consensus 160 ~l~i~ed~~~~~~i~gl~~~~v~s~~e~~ 188 (345)
T cd01368 160 SLRLREDHNGNMYVAGLTEVEVSSTEEAR 188 (345)
T ss_pred ceEEEECCCCCEEecCCEEEEeCCHHHHH
Confidence 58999999999999999999999999974
No 3
>KOG4280|consensus
Probab=100.00 E-value=3e-42 Score=328.84 Aligned_cols=166 Identities=24% Similarity=0.364 Sum_probs=148.6
Q ss_pred CCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC-----CceeeeeceeeCCCCCcchhhcccchhhHhhhhC
Q psy17370 97 CSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA-----KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN 170 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~-----~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~ 170 (262)
..+|+|++|+||++..+.. ....++.++.....+.+.+.. ..+.|+||+||+++++|++||+.++.|+|+.+|+
T Consensus 4 ~~~v~vvvr~rPl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~ 83 (574)
T KOG4280|consen 4 ACKVKVVVRVRPLSAAERSELLKSILSVDPAHGRVSLKNPVAGIEGKPKSFTFDAVFDSDSTQDDVYQETVAPLVESVLE 83 (574)
T ss_pred ccceeEEEeecCCCchhhhhhhccccccccccceeeecCCcccccCCCCCceeeeeecCCCCHHHHHHHHhHHHHHHHhc
Confidence 5689999999999998776 556666676666666554433 6788999999999999999999999999999999
Q ss_pred CCceeEeeeeccCCCCceecCCC-CCCCchHhhhhhccccccCcc----ceEEEEEEEEEE---EEecCCC----Cceee
Q psy17370 171 GYNVCLFAYGQTGSGKSYRGDST-LNSSVLRPRVLFYPGFSWSHS----GWTGWVSCVVVI---AVDFGCG----SWRFE 238 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm~G~-~~~~Giipr~~~~lf~~~~~~----~~~~~vS~~EIy---l~Dll~~----~l~i~ 238 (262)
|||+||||||||||||||||+|. +...|||||++.+||..+++. .|.|+|||+||| |+|||+. .|.|+
T Consensus 84 GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lr 163 (574)
T KOG4280|consen 84 GYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKTRFLVRVSYLEIYNESIRDLLSPVNPKGLELR 163 (574)
T ss_pred ccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccceEEEEeehHHHHhHHHHHHhCccCcCCceee
Confidence 99999999999999999999999 688999999999999999865 399999999999 9998864 89999
Q ss_pred ecCCCcEEEcCceEEecCChhhhC
Q psy17370 239 SKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 239 ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
|+++.||||+|++++.|.++++++
T Consensus 164 e~p~~Gv~V~nlse~~v~s~~d~~ 187 (574)
T KOG4280|consen 164 EDPKCGVYVENLSEMDVESAEDAQ 187 (574)
T ss_pred EcCCCceEecCcceeecCCHHHHH
Confidence 999999999999999999999874
No 4
>KOG0243|consensus
Probab=100.00 E-value=2.3e-41 Score=335.96 Aligned_cols=167 Identities=23% Similarity=0.337 Sum_probs=145.8
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC--C--CceeeeeceeeCCCCCcchhhcccchhhHhhhhC
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN--A--KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN 170 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~--~--~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~ 170 (262)
...||+|+|||||++++|.. ....+|.+++....|.+... . ..+.|+||+||++.+.|.+||+.++.|+|+.||.
T Consensus 47 ~~~NIqVivRcRp~n~~E~~~~s~~VVs~~~~~kEV~v~~~~~sk~~~k~ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~ 126 (1041)
T KOG0243|consen 47 KEVNIQVIVRCRPRNDRERKSKSSVVVSCDGIRKEVAVRQTIASKQIDKTFTFDKVFGPESQQEDLYDQAVSPIIKEVLE 126 (1041)
T ss_pred CCCceEEEEEeCCCCchhhhcCCCeEEecCCCcceEEEecccccccccceeecceeeCcchhHHHHHHHHHHHHHHHHhc
Confidence 46799999999999999987 66667778775555544333 2 4789999999999999999999999999999999
Q ss_pred CCceeEeeeeccCCCCceecCC--------CCCCCchHhhhhhccccccCc--cceEEEEEEEEEE---EEecCC-----
Q psy17370 171 GYNVCLFAYGQTGSGKSYRGDS--------TLNSSVLRPRVLFYPGFSWSH--SGWTGWVSCVVVI---AVDFGC----- 232 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm~G--------~~~~~Giipr~~~~lf~~~~~--~~~~~~vS~~EIy---l~Dll~----- 232 (262)
|||||||||||||+||||||.| .+.++|||||++.+||..++. .+|.++|||+|+| |.|||.
T Consensus 127 GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le~~~~EYsvKVSfLELYNEEl~DLLa~~~~~ 206 (1041)
T KOG0243|consen 127 GYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLEAQGAEYSVKVSFLELYNEELTDLLASEDTS 206 (1041)
T ss_pred cCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHHhcCCeEEEEEEehhhhhHHHHHhcCCcccc
Confidence 9999999999999999999999 458999999999999999874 5899999999999 999985
Q ss_pred -CCceeeecC-----CCcEEEcCceEEecCChhhhC
Q psy17370 233 -GSWRFESKP-----SHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 -~~l~i~ed~-----~~~v~v~gl~~~~V~s~~e~l 262 (262)
..+.++++. ++||+|.|+.+..|.+..|+|
T Consensus 207 ~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~ 242 (1041)
T KOG0243|consen 207 DKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIY 242 (1041)
T ss_pred ccccccccCCcccCCcCcEEEecceeeeecchhHHH
Confidence 334566665 589999999999999999874
No 5
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=1.3e-40 Score=306.02 Aligned_cols=163 Identities=23% Similarity=0.331 Sum_probs=142.1
Q ss_pred CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeE
Q psy17370 98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCL 176 (262)
Q Consensus 98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~i 176 (262)
.+|+|+||+||+...|.. ....++...+++..+.... ..+.|.||+||+++++|++||+.+++|+|+.+++|+|+||
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~~~~~~~~~--~~~~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti 78 (337)
T cd01373 1 PAVKVVVRIRPPNEIEADGGQGQCLKKLSSDTLVWHSH--PPRMFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSI 78 (337)
T ss_pred CCeEEEEEcCcCChhhcccCCCeEEEEcCCCcEEeeCC--CCcEEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeE
Confidence 379999999999998876 4455666655554444332 3689999999999999999999999999999999999999
Q ss_pred eeeeccCCCCceecCCCC--------CCCchHhhhhhccccccCc--------cceEEEEEEEEEE---EEecCC---CC
Q psy17370 177 FAYGQTGSGKSYRGDSTL--------NSSVLRPRVLFYPGFSWSH--------SGWTGWVSCVVVI---AVDFGC---GS 234 (262)
Q Consensus 177 faYG~tgSGKTyTm~G~~--------~~~Giipr~~~~lf~~~~~--------~~~~~~vS~~EIy---l~Dll~---~~ 234 (262)
||||||||||||||+|+. .++|||||++++||..++. ..|.++|||+||| ++|||. ..
T Consensus 79 ~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~ 158 (337)
T cd01373 79 FAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRN 158 (337)
T ss_pred EEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHHhhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCC
Confidence 999999999999999976 3689999999999987643 3789999999999 999985 56
Q ss_pred ceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 235 WRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 235 l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
++++++..+++++.|++++.|.+.+|++
T Consensus 159 l~i~e~~~~~~~v~gl~~~~v~s~~e~~ 186 (337)
T cd01373 159 LKIREDIKKGVYVENLTEEYVSSYEDVY 186 (337)
T ss_pred ceEEECCCCCEEeCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999974
No 6
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=2.9e-40 Score=331.51 Aligned_cols=160 Identities=23% Similarity=0.348 Sum_probs=138.1
Q ss_pred CCCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCcee
Q psy17370 96 ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVC 175 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ 175 (262)
.+++|+|+|||||++..|. +...++.+.++. +.+ ..+.|.||+||+++++|++||+.++.|||+.+|+|||+|
T Consensus 96 ~ds~VkV~VRVRPl~~~E~-g~~iV~~~s~ds--l~I----~~qtFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaT 168 (1320)
T PLN03188 96 SDSGVKVIVRMKPLNKGEE-GEMIVQKMSNDS--LTI----NGQTFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSS 168 (1320)
T ss_pred CCCCeEEEEEcCCCCCccC-CCeeEEEcCCCe--EEE----eCcEEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcce
Confidence 3679999999999998863 233344444333 333 357899999999999999999999999999999999999
Q ss_pred EeeeeccCCCCceecCCCC----------CCCchHhhhhhccccccCc---------cceEEEEEEEEEE---EEecCC-
Q psy17370 176 LFAYGQTGSGKSYRGDSTL----------NSSVLRPRVLFYPGFSWSH---------SGWTGWVSCVVVI---AVDFGC- 232 (262)
Q Consensus 176 ifaYG~tgSGKTyTm~G~~----------~~~Giipr~~~~lf~~~~~---------~~~~~~vS~~EIy---l~Dll~- 232 (262)
|||||||||||||||+|+. .++|||||++++||..+.. ..|.|+|||+||| |+|||.
T Consensus 169 IFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp 248 (1320)
T PLN03188 169 VFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDP 248 (1320)
T ss_pred eecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHHHHHhhhhhccccccceEEEEEEEeeecCcceecccc
Confidence 9999999999999999963 5789999999999988752 3688999999999 999985
Q ss_pred --CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 233 --GSWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 --~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
.+|+|++|..+|+||.|++++.|.+.+|++
T Consensus 249 ~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l 280 (1320)
T PLN03188 249 SQKNLQIREDVKSGVYVENLTEEYVKTMKDVT 280 (1320)
T ss_pred ccCCceEEEcCCCCeEeCCCeEEeCCCHHHHH
Confidence 569999999999999999999999999874
No 7
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=3.9e-40 Score=305.02 Aligned_cols=165 Identities=28% Similarity=0.398 Sum_probs=148.8
Q ss_pred CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcC-----CCCceeeeeceeeCCC-------CCcchhhcccchhh
Q psy17370 98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVND-----NAKSYTFKLDHCLGQD-------TDQTSVFTIIAQPL 164 (262)
Q Consensus 98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~-----~~~~~~f~FD~vf~~~-------~~q~~vy~~~~~pl 164 (262)
++|+|+||+||++..|.. ++..++.+.++...+..+. ....+.|.||+||+++ ++|++||+.++.|+
T Consensus 1 ~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~ 80 (356)
T cd01365 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGREL 80 (356)
T ss_pred CCEEEEEEeCcCChhhhccCCceEEEECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHH
Confidence 479999999999999877 7777888888665565554 2468899999999998 99999999999999
Q ss_pred HhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC----
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC---- 232 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~---- 232 (262)
|+.+++|+|+||||||||||||||||+|+..++|||||++++||..+.. ..+.|+|||+||| ++|||.
T Consensus 81 v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~~~~Gli~r~~~~Lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 160 (356)
T cd01365 81 LDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKK 160 (356)
T ss_pred HHHHhCCCceEEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCcc
Confidence 9999999999999999999999999999999999999999999998864 3689999999999 999985
Q ss_pred --CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 233 --GSWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 --~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
..|+++++..+++++.|++++.|.+.+|++
T Consensus 161 ~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~ 192 (356)
T cd01365 161 NKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQ 192 (356)
T ss_pred CCcCceEEECCCCCEEeCCCEEEEeCCHHHHH
Confidence 358999999999999999999999999974
No 8
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=3.4e-40 Score=301.64 Aligned_cols=165 Identities=22% Similarity=0.212 Sum_probs=146.1
Q ss_pred CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEE-cCCC-------CceeeeeceeeCCCCCcchhhcccchhhHhhh
Q psy17370 98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKV-NDNA-------KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAA 168 (262)
Q Consensus 98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~-~~~~-------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 168 (262)
.+|+|+|||||++..|.. ++..++.+.+++..... +... +.+.|+||+||+++++|++||+.+++|+|+.+
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vf~~~~~plv~~~ 80 (322)
T cd01367 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFDEAVTNEEVYRSTVKPLIPHV 80 (322)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEECCCCEEEEecCccccccccccCCceEecceEECCCCCHHHHHHHHHHHHHHHH
Confidence 379999999999999876 56677777776332222 1111 36899999999999999999999999999999
Q ss_pred hCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc--cceEEEEEEEEEE---EEecCC--CCceeeecC
Q psy17370 169 FNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH--SGWTGWVSCVVVI---AVDFGC--GSWRFESKP 241 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~--~~~~~~vS~~EIy---l~Dll~--~~l~i~ed~ 241 (262)
++|+|+||||||||||||||||+|+..++|||||++++||..+++ ..+.++|||+||| ++|||. ..+++++|.
T Consensus 81 ~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Glipr~~~~lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~l~i~~~~ 160 (322)
T cd01367 81 FEGGVATCFAYGQTGSGKTYTMLGDENQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLNDRKRLSVLEDG 160 (322)
T ss_pred hCCCceEEEeccCCCCCCceEecCcCCcCccHHHHHHHHHHHHhccccccEEEEEEEeeecCchhhhccCccceeEEEcC
Confidence 999999999999999999999999999999999999999999876 4899999999999 999884 689999999
Q ss_pred CCcEEEcCceEEecCChhhhC
Q psy17370 242 SHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 242 ~~~v~v~gl~~~~V~s~~e~l 262 (262)
.++++|.|++++.|.+.+|++
T Consensus 161 ~~~~~v~~l~~~~v~s~~e~~ 181 (322)
T cd01367 161 KGNVQIVGLTEKPVTSVDELL 181 (322)
T ss_pred CCCEEeCCCEEEEeCCHHHHH
Confidence 999999999999999999874
No 9
>KOG0242|consensus
Probab=100.00 E-value=6e-40 Score=322.55 Aligned_cols=166 Identities=23% Similarity=0.313 Sum_probs=149.4
Q ss_pred CCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC-----CceeeeeceeeCCCCCcchhhcccchhhHhhhhC
Q psy17370 97 CSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA-----KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN 170 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~-----~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~ 170 (262)
...|.|+||+||++..+.. ++.+.|.+..+...+...... ....|.||+||+++++|++||+..++|+|..+++
T Consensus 5 ~~~i~V~vrvRP~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~ 84 (675)
T KOG0242|consen 5 EEKILVSVRVRPLNEREDARGDRSDWHCINDTTLFKRVTKSLPEKSKPEKYEFDRVFGEESTQEDVYERTTKPLLLSVLE 84 (675)
T ss_pred cceeEEEEEeCCCCccccccCCccceEecCCceeEeeccccccccccccceeeeeecCCCCCHHHHHHhccHHHHHHHhc
Confidence 4689999999999998554 677778887777655543322 2489999999999999999999999999999999
Q ss_pred CCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCCCC---ceeeecC
Q psy17370 171 GYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGCGS---WRFESKP 241 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~~~---l~i~ed~ 241 (262)
|+|++|||||||||||||||.|...+|||||+++++||..+.+ +.|.+.|||+||| |+|||+.+ |+|+||.
T Consensus 85 G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~ 164 (675)
T KOG0242|consen 85 GFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGEREFSVRVSYLEIYNERIRDLLNPDGGDLRLREDS 164 (675)
T ss_pred CcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCceeEEEEEEEEEeccccccccCCCCCCceEeEcC
Confidence 9999999999999999999999999999999999999998876 4799999999999 99999755 9999999
Q ss_pred CCcEEEcCceEEecCChhhhC
Q psy17370 242 SHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 242 ~~~v~v~gl~~~~V~s~~e~l 262 (262)
.+|++|.||++..|.|.+|++
T Consensus 165 ~~gi~V~gL~e~~v~s~e~~~ 185 (675)
T KOG0242|consen 165 EGGIVVPGLTEETVSSREELL 185 (675)
T ss_pred CCCEEecCCeeecCCCHHHHH
Confidence 999999999999999999974
No 10
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=4.2e-39 Score=294.05 Aligned_cols=164 Identities=21% Similarity=0.255 Sum_probs=142.2
Q ss_pred CeEEEEEeCCCCccccCCCcceEEEcCCc---eEEEEcCC---CCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCC
Q psy17370 99 RMTVAVRIRPLLVKELHMDVSSIEISPDR---REMKVNDN---AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGY 172 (262)
Q Consensus 99 ~IkV~vRiRP~~~~E~~~~~~~i~~~~~~---~~i~~~~~---~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~ 172 (262)
+|+|+|||||+...|.....++.....++ ..+.+... ...+.|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus 1 ~i~V~vRvRP~~~~e~~~~~~v~~~~~~~~~~~~v~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~ 80 (319)
T cd01376 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNRGETKKYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQ 80 (319)
T ss_pred CcEEEEEeCcCCccccCCCceEEEeCCCCCcceEEEEeCCCCCCCccEEecCeEECCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 68999999999988855444433333322 23433322 2678999999999999999999999999999999999
Q ss_pred ceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCcc--ceEEEEEEEEEE---EEecCC---CCceeeecCCCc
Q psy17370 173 NVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHS--GWTGWVSCVVVI---AVDFGC---GSWRFESKPSHE 244 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~~--~~~~~vS~~EIy---l~Dll~---~~l~i~ed~~~~ 244 (262)
|+||||||||||||||||+|+..++|||||++++||..+++. .+.|.|||+||| ++|||. ..++|+++++++
T Consensus 81 n~~i~ayG~tgSGKTyTm~G~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~ 160 (319)
T cd01376 81 NATVFAYGSTGAGKTHTMLGDPNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGN 160 (319)
T ss_pred ceEEEEECCCCCCCcEEEeCCcCccchHHHHHHHHHHHHhhccccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCC
Confidence 999999999999999999999999999999999999888654 889999999999 999985 579999999999
Q ss_pred EEEcCceEEecCChhhhC
Q psy17370 245 IYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 245 v~v~gl~~~~V~s~~e~l 262 (262)
+++.|++++.|.+.+|++
T Consensus 161 ~~v~gl~~~~v~s~~e~~ 178 (319)
T cd01376 161 ILIVGLTSKPIKSMAEFE 178 (319)
T ss_pred EEeeCCEEEEeCCHHHHH
Confidence 999999999999999874
No 11
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=5.3e-39 Score=293.56 Aligned_cols=163 Identities=22% Similarity=0.345 Sum_probs=147.9
Q ss_pred CeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEee
Q psy17370 99 RMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFA 178 (262)
Q Consensus 99 ~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifa 178 (262)
+|+|+||+||++..|...+.++|.+.++.. +...+....+.|.||+||+++++|++||+.++.|+|+.+++|+|+||||
T Consensus 1 ~V~V~vRvRP~~~~e~~~~~~~~~~~~~~~-v~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~a 79 (321)
T cd01374 1 KIKVSVRVRPLNPRESDNEQVAWSIDNDNT-ISLEESTPGQSFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFA 79 (321)
T ss_pred CeEEEEEcCcCCcccccCCcceEEECCCCE-EEEcCCCCCeEEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEe
Confidence 599999999999988776778888888744 4444445789999999999999999999999999999999999999999
Q ss_pred eeccCCCCceecCCCCCCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC---CCceeeecCCCcEEEcC
Q psy17370 179 YGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC---GSWRFESKPSHEIYLSV 249 (262)
Q Consensus 179 YG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~~~~v~v~g 249 (262)
||+|||||||||+|+..++|||||++++||..+.+ ..|.|+|||+||| ++|||. ..+++++|+.+++++.|
T Consensus 80 yG~tgSGKT~T~~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~g 159 (321)
T cd01374 80 YGQTSSGKTFTMSGDEQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAG 159 (321)
T ss_pred ecCCCCCCceeccCCCCCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCC
Confidence 99999999999999999999999999999987753 5889999999999 999985 56999999999999999
Q ss_pred ceEEecCChhhhC
Q psy17370 250 SVLTDITKFIEVY 262 (262)
Q Consensus 250 l~~~~V~s~~e~l 262 (262)
++++.|.+.+|++
T Consensus 160 l~~~~v~s~~e~~ 172 (321)
T cd01374 160 LTEEIVTSPEHLL 172 (321)
T ss_pred ceEEEeCCHHHHH
Confidence 9999999999874
No 12
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=4.3e-39 Score=295.58 Aligned_cols=165 Identities=22% Similarity=0.336 Sum_probs=147.9
Q ss_pred CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC-----CCceeeeeceeeCCCCCcchhhcccchhhHhhhhCC
Q psy17370 98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN-----AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNG 171 (262)
Q Consensus 98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G 171 (262)
++|+|+||+||++..|.. ++..++.++++...+.+... ...+.|.||+||+++++|++||+.++.|+|+.+++|
T Consensus 1 ~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G 80 (333)
T cd01371 1 ENVKVVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTFDAVYDPNSTQEDVYNETARPLVDSVLEG 80 (333)
T ss_pred CCeEEEEEcCcCChhhhhcCCCeEEEEcCCCCEEEEeCCcccccCCCceeeeccccCCCccHHHHHHHHHHHHHHHHhCC
Confidence 479999999999998876 66677888776666655432 267899999999999999999999999999999999
Q ss_pred CceeEeeeeccCCCCceecCCCCC---CCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC----CCceee
Q psy17370 172 YNVCLFAYGQTGSGKSYRGDSTLN---SSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC----GSWRFE 238 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm~G~~~---~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~----~~l~i~ 238 (262)
+|+||||||+|||||||||+|+.. ++|||||++++||..+.. ..|.|.|||+||| ++|||. ..++++
T Consensus 81 ~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~ 160 (333)
T cd01371 81 YNGTIFAYGQTGTGKTFTMEGVREPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELK 160 (333)
T ss_pred CceeEEecCCCCCCCcEeecCCCCcccccchHHHHHHHHHHHHhhccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEE
Confidence 999999999999999999999987 999999999999987754 5899999999999 999995 467999
Q ss_pred ecCCCcEEEcCceEEecCChhhhC
Q psy17370 239 SKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 239 ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
+++.++++|.|++++.|.+.+|++
T Consensus 161 ~~~~~~~~v~~l~~~~v~s~~~~~ 184 (333)
T cd01371 161 ERPDRGVYVKDLSMFVVKNAEEMD 184 (333)
T ss_pred EcCCCCEEeCCCEEEEeCCHHHHH
Confidence 999999999999999999999874
No 13
>KOG0245|consensus
Probab=100.00 E-value=3.1e-40 Score=323.90 Aligned_cols=165 Identities=27% Similarity=0.376 Sum_probs=152.0
Q ss_pred CCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC-Cceeeeeceee-------CCCCCcchhhcccchhhHhh
Q psy17370 97 CSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA-KSYTFKLDHCL-------GQDTDQTSVFTIIAQPLLDA 167 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~-~~~~f~FD~vf-------~~~~~q~~vy~~~~~plv~~ 167 (262)
..+|+|.||+||++.+|.. ...++|.+.++.+++..+.+. ....|+||+.| +..++|..||+.++.++|++
T Consensus 3 ~ssv~VAVRVRPfn~rE~s~~~k~Vvqm~gn~ttii~~~~~k~~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~ 82 (1221)
T KOG0245|consen 3 GSSVKVAVRVRPFNAREKSRDAKCVVQMQGNTTTIINPKGSKDAPKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDH 82 (1221)
T ss_pred CCceEEEEEeccchhhhhhcccceEEEecCCceeeecCCCcccCCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHH
Confidence 4689999999999999988 788999999999988887744 66779999999 44588999999999999999
Q ss_pred hhCCCceeEeeeeccCCCCceecCCCC--CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC-----
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRGDSTL--NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC----- 232 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm~G~~--~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~----- 232 (262)
+++|||+||||||||||||+|||+|.. +++|||||.|++||.++.. ..|.|.|||+||| +.|||+
T Consensus 83 AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcErVrDLL~~p~~k 162 (1221)
T KOG0245|consen 83 AFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCERVRDLLNAPKSK 162 (1221)
T ss_pred HhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999998 9999999999999999864 4899999999999 999885
Q ss_pred CCceeeecCCCcEEEcCceEEecCChhhh
Q psy17370 233 GSWRFESKPSHEIYLSVSVLTDITKFIEV 261 (262)
Q Consensus 233 ~~l~i~ed~~~~v~v~gl~~~~V~s~~e~ 261 (262)
++|++||++..|+||+.|+.+.|+|..|+
T Consensus 163 g~LRVREHP~lGPYVedLS~~aV~Sy~dI 191 (1221)
T KOG0245|consen 163 GGLRVREHPILGPYVEDLSKLAVTSYADI 191 (1221)
T ss_pred CCceeeccCccChhHhHhhhcccccHHHH
Confidence 89999999999999999999999998774
No 14
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.2e-38 Score=291.77 Aligned_cols=164 Identities=25% Similarity=0.349 Sum_probs=147.6
Q ss_pred CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeE
Q psy17370 98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCL 176 (262)
Q Consensus 98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~i 176 (262)
++|+|+||+||++..|.. ++..++.+.++ ..+.+......+.|.||+||+++++|++||+.+++|+|+.+++|+|+||
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~v~~~~~-~~v~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i 80 (325)
T cd01369 2 CNIKVVCRFRPLNEKEELRGSKSIVKFPGE-DTVSIAGSDDGKTFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTI 80 (325)
T ss_pred CCeEEEEEcCcCChhhhccCCceEEEEcCC-CEEEecCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceE
Confidence 489999999999998865 66777888766 4555555567889999999999999999999999999999999999999
Q ss_pred eeeeccCCCCceecCCCCC---CCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC---CCceeeecCCC
Q psy17370 177 FAYGQTGSGKSYRGDSTLN---SSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC---GSWRFESKPSH 243 (262)
Q Consensus 177 faYG~tgSGKTyTm~G~~~---~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~~~ 243 (262)
||||+|||||||||+|+.. ++|||||++++||..+.+ .+|.|+|||+||| ++||+. .+++++++..+
T Consensus 81 ~ayG~tgSGKT~Tm~G~~~~~~~~Giipr~~~~Lf~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~ 160 (325)
T cd01369 81 FAYGQTGSGKTYTMEGPPGDPELKGIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNR 160 (325)
T ss_pred EEeCCCCCCceEEecCCCCccccCChHHHHHHHHHHHHhhccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCC
Confidence 9999999999999999987 899999999999988754 3789999999999 999884 56999999999
Q ss_pred cEEEcCceEEecCChhhhC
Q psy17370 244 EIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 244 ~v~v~gl~~~~V~s~~e~l 262 (262)
++++.|++++.|.+.+|++
T Consensus 161 ~~~v~gl~~~~v~s~~e~~ 179 (325)
T cd01369 161 GVYVKGLTERFVSSPEEVL 179 (325)
T ss_pred CEEEcCCEEEEcCCHHHHH
Confidence 9999999999999999974
No 15
>KOG0240|consensus
Probab=100.00 E-value=2.4e-39 Score=303.25 Aligned_cols=167 Identities=22% Similarity=0.228 Sum_probs=144.6
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV 174 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ 174 (262)
..++|+|+||+||++..|.. ++..+....+....+.+......+.|.||+||.++++|++||+.+++|+|++||.|||+
T Consensus 5 ~~~~IkV~cR~rP~n~~E~~~~~~~i~~~~~~~~~v~~~~~~~~~~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNG 84 (607)
T KOG0240|consen 5 AECSIKVVCRFRPLNGLENNLGSKFIDCFENGENTVVLETTKETKTYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNG 84 (607)
T ss_pred CCCceEEEEEeecCCchhhhcCCcCccCCCCCcceEEEecccccccceeeeecCCCccHHHHHHHHHHHHHHHHhcccce
Confidence 47899999999999999877 44433333442444555444456999999999999999999999999999999999999
Q ss_pred eEeeeeccCCCCceecCCCCC---CCchHhhhhhccccccCc----cceEEEEEEEEEE------EEecCCCCceeeecC
Q psy17370 175 CLFAYGQTGSGKSYRGDSTLN---SSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI------AVDFGCGSWRFESKP 241 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~G~~~---~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy------l~Dll~~~l~i~ed~ 241 (262)
||||||||||||||||.|... ..|||||.+++||..+.. -+|.|+|||+||| |+|+-+.||.++||.
T Consensus 85 TvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK 164 (607)
T KOG0240|consen 85 TVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEENLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDK 164 (607)
T ss_pred eEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcccceEEEEEEeehhhhhHHHHHhCcccCCceeeccc
Confidence 999999999999999999874 679999999999998864 4899999999999 555557999999998
Q ss_pred CCcEEEcCceEEecCChhhhC
Q psy17370 242 SHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 242 ~~~v~v~gl~~~~V~s~~e~l 262 (262)
..++||+|+++..|.+++|||
T Consensus 165 ~~v~~vkG~t~~~v~s~d~v~ 185 (607)
T KOG0240|consen 165 NRVPYVKGVTERFVSSPDEVL 185 (607)
T ss_pred CCCceecCceeEEecCHHHHH
Confidence 899999999999999999985
No 16
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=1.9e-38 Score=293.27 Aligned_cols=165 Identities=25% Similarity=0.381 Sum_probs=148.0
Q ss_pred CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC----CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCC
Q psy17370 98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA----KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGY 172 (262)
Q Consensus 98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~----~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~ 172 (262)
.+|+|+||+||+...|.. +...++.+.++...+...... ..+.|.||+||+++++|++||+.++.|+|+.+++|+
T Consensus 2 ~~i~V~vRvRP~~~~e~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~ 81 (352)
T cd01364 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGY 81 (352)
T ss_pred CCEEEEEEcCcCCccccccCCCeEEEEcCCCcEEEEcCCCcccccceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCC
Confidence 589999999999999876 677788888876666665542 678999999999999999999999999999999999
Q ss_pred ceeEeeeeccCCCCceecCCCC-----------CCCchHhhhhhccccccCc--cceEEEEEEEEEE---EEecCCC---
Q psy17370 173 NVCLFAYGQTGSGKSYRGDSTL-----------NSSVLRPRVLFYPGFSWSH--SGWTGWVSCVVVI---AVDFGCG--- 233 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~G~~-----------~~~Giipr~~~~lf~~~~~--~~~~~~vS~~EIy---l~Dll~~--- 233 (262)
|+||||||+|||||||||+|+. ..+|||||++++||..++. ..+.++|||+||| ++|||..
T Consensus 82 n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~ 161 (352)
T cd01364 82 NCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLLSSESD 161 (352)
T ss_pred eEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHHHHHHhccceeEEEEEEEEeeCCeeeeCCCCccc
Confidence 9999999999999999999985 3489999999999988875 6899999999999 9999963
Q ss_pred ---Cceeeec--CCCcEEEcCceEEecCChhhhC
Q psy17370 234 ---SWRFESK--PSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 234 ---~l~i~ed--~~~~v~v~gl~~~~V~s~~e~l 262 (262)
.++++++ ..++++|.|++++.|.+++|++
T Consensus 162 ~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~ 195 (352)
T cd01364 162 LNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGL 195 (352)
T ss_pred cCccceEEeccCcCCCEEeCCcEEEEeCCHHHHH
Confidence 5899999 5799999999999999999974
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=5.9e-38 Score=288.79 Aligned_cols=161 Identities=27% Similarity=0.383 Sum_probs=144.1
Q ss_pred CeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEe
Q psy17370 99 RMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLF 177 (262)
Q Consensus 99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~if 177 (262)
+|+|+||+||+...|.. +...++.+.+.+..+.... .+.|.||+||+++++|++||+.+++|+|+.+++|+|+|||
T Consensus 2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~---~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ 78 (341)
T cd01372 2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGT---DKSFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVL 78 (341)
T ss_pred CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecC---CcEEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCcccee
Confidence 69999999999998876 5566777766655555533 6799999999999999999999999999999999999999
Q ss_pred eeeccCCCCceecCCCC------CCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC------CCceee
Q psy17370 178 AYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC------GSWRFE 238 (262)
Q Consensus 178 aYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~------~~l~i~ 238 (262)
|||||||||||||+|+. .++|||||++++||..++. .++.|.|||+||| ++|||. ..++|+
T Consensus 79 ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~ 158 (341)
T cd01372 79 AYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIR 158 (341)
T ss_pred eecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHhccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEE
Confidence 99999999999999984 5799999999999998874 4789999999999 999985 358999
Q ss_pred ecCCCcEEEcCceEEecCChhhhC
Q psy17370 239 SKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 239 ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
++..++++|.|++++.|.+.+|++
T Consensus 159 e~~~~~~~i~gl~~~~v~s~~e~~ 182 (341)
T cd01372 159 EDSKGNIIIVGLTEVTVNSAQEVM 182 (341)
T ss_pred ECCCCCEecCCCEEEEECCHHHHH
Confidence 999999999999999999999974
No 18
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=2.9e-37 Score=282.95 Aligned_cols=165 Identities=27% Similarity=0.392 Sum_probs=147.6
Q ss_pred CCCeEEEEEeCCCCccccCCCcceEEEcCCc-eEEEEcCC-CCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370 97 CSRMTVAVRIRPLLVKELHMDVSSIEISPDR-REMKVNDN-AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV 174 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~-~~i~~~~~-~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ 174 (262)
+|+|+|+||+||+...|......++.+.+.+ ..+.+... .+.+.|.||+||+++++|++||+. +.|+|+.+++|+|+
T Consensus 1 ~~~i~V~vRirP~~~~e~~~~~~~~~~~~~~~~~i~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~ 79 (329)
T cd01366 1 KGNIRVFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNV 79 (329)
T ss_pred CCCEEEEEEcCcCCccccCCCccEEEEcCCCceEEEEeCCCCCceEEecCEEECCCCCHHHHHHH-HHHHHHHHhCCCce
Confidence 4789999999999998866566677777764 66666554 688999999999999999999998 58999999999999
Q ss_pred eEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCCC------Cceeeec
Q psy17370 175 CLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGCG------SWRFESK 240 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~~------~l~i~ed 240 (262)
||||||+|||||||||+|...++|||||++++||..++. ..|.+++||+||| ++||+.. .++|+++
T Consensus 80 ~i~ayG~tgSGKT~tl~G~~~~~Gli~r~~~~lf~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~ 159 (329)
T cd01366 80 CIFAYGQTGSGKTYTMEGPPENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHD 159 (329)
T ss_pred EEEEeCCCCCCCcEEecCCCCCCCcHHHHHHHHHHHHHhhhccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEEC
Confidence 999999999999999999999999999999999987753 4788999999999 9999864 5899999
Q ss_pred CCCcEEEcCceEEecCChhhhC
Q psy17370 241 PSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 241 ~~~~v~v~gl~~~~V~s~~e~l 262 (262)
..+++++.|++++.|.+++|++
T Consensus 160 ~~~~~~i~~l~~~~v~s~~e~~ 181 (329)
T cd01366 160 SKGETYVTNLTEVPVSSPEEVT 181 (329)
T ss_pred CCCCEEecCCEEEEeCCHHHHH
Confidence 9999999999999999999974
No 19
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=1.6e-37 Score=285.28 Aligned_cols=159 Identities=27% Similarity=0.395 Sum_probs=136.0
Q ss_pred CeEEEEEeCCCCccccCCCcceEEEcCCceEEEE--c---------CCCCceeeeeceeeCCCCCcchhhcccchhhHhh
Q psy17370 99 RMTVAVRIRPLLVKELHMDVSSIEISPDRREMKV--N---------DNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDA 167 (262)
Q Consensus 99 ~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~--~---------~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~ 167 (262)
.|+|+||+||+...+.. .+.+..++..+.+ + ...+.+.|.||+||++ ++|++||+.++.|+|+.
T Consensus 1 ~i~V~vRvRP~~~~~~~----~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~f~FD~vf~~-~~q~~vy~~~~~p~v~~ 75 (334)
T cd01375 1 TIQVFVRVRPTPTKQGS----SIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFHN-ASQEEVYETVAKPVVDS 75 (334)
T ss_pred CeEEEEECCCCCCCCCc----cEEEcCCCCEEEEecccccccccccCCcCceEEEcCcccCC-CCHHHHHHHHHHHHHHH
Confidence 48999999999985422 2344444333222 1 2226788999999999 99999999999999999
Q ss_pred hhCCCceeEeeeeccCCCCceecCCCC---CCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCCCC----
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRGDSTL---NSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGCGS---- 234 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm~G~~---~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~~~---- 234 (262)
+++|+|+||||||+|||||||||+|+. .++|||||++++||..++. ..|.|+|||+||| ++|||...
T Consensus 76 ~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Glipr~~~~lf~~~~~~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~ 155 (334)
T cd01375 76 ALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTPEAL 155 (334)
T ss_pred HhCCCccceeeecCCCCCCeEEccCCCCcccCCchHHHHHHHHHHHHHhccCcceEEEEEEEEEECCEeecCCCCCcccc
Confidence 999999999999999999999999986 5789999999999998864 4799999999999 99998644
Q ss_pred -----ceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 235 -----WRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 235 -----l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
+.|++|..++++|.|++++.|.+++|++
T Consensus 156 ~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~ 188 (334)
T cd01375 156 ESLPAVTILEDSEQNIHVKGLSLHSATTEEEAL 188 (334)
T ss_pred ccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHH
Confidence 7999999999999999999999999974
No 20
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=1.4e-36 Score=277.94 Aligned_cols=164 Identities=25% Similarity=0.374 Sum_probs=146.7
Q ss_pred CeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCC----CCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370 99 RMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDN----AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV 174 (262)
Q Consensus 99 ~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~----~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ 174 (262)
+|+|+||+||+...|..+...+|.+.+++..+..... ...+.|.||+||+++++|++||+.++.|+|+.+++|+|+
T Consensus 1 ~i~V~vRvrP~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~ 80 (328)
T cd00106 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNG 80 (328)
T ss_pred CeEEEEEcCCCCcccccCCCcEEEECCCCEEEEecCccccCcCceEEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCce
Confidence 5899999999998875567788888886544333322 367999999999999999999999999999999999999
Q ss_pred eEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCcc-----ceEEEEEEEEEE---EEecCCC-----CceeeecC
Q psy17370 175 CLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHS-----GWTGWVSCVVVI---AVDFGCG-----SWRFESKP 241 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~~-----~~~~~vS~~EIy---l~Dll~~-----~l~i~ed~ 241 (262)
|||+||++||||||||+|+..++|||||++++||..+.+. .+.|.+||+||| ++||+.. .+++++|.
T Consensus 81 ~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~ 160 (328)
T cd00106 81 TIFAYGQTGSGKTYTMFGSPKDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDP 160 (328)
T ss_pred eEEEecCCCCCCeEEecCCCCCCchHHHHHHHHHHHHhhccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcC
Confidence 9999999999999999999999999999999999988754 589999999999 9999854 58999999
Q ss_pred CCcEEEcCceEEecCChhhhC
Q psy17370 242 SHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 242 ~~~v~v~gl~~~~V~s~~e~l 262 (262)
.+++++.|++++.|.+.+|++
T Consensus 161 ~~~~~v~~l~~~~v~s~~e~~ 181 (328)
T cd00106 161 KGGVYVKGLTEVEVGSAEDAL 181 (328)
T ss_pred CCCEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999974
No 21
>KOG0239|consensus
Probab=100.00 E-value=2.1e-37 Score=303.75 Aligned_cols=177 Identities=27% Similarity=0.395 Sum_probs=146.7
Q ss_pred cccCCccccccCCCCCCeEEEEEeCCCCccccCC-CcceEEEcCCc-eEEEEcCCC---CceeeeeceeeCCCCCcchhh
Q psy17370 83 MRSSSENCVADNLECSRMTVAVRIRPLLVKELHM-DVSSIEISPDR-REMKVNDNA---KSYTFKLDHCLGQDTDQTSVF 157 (262)
Q Consensus 83 ~~~~~~~~~~~~~~~~~IkV~vRiRP~~~~E~~~-~~~~i~~~~~~-~~i~~~~~~---~~~~f~FD~vf~~~~~q~~vy 157 (262)
.+...+|...+. +|||+|+||+||+...|... ...++...+.. ..+..+... ..+.|.||+||++.++|++||
T Consensus 301 ~r~kL~N~i~eL--kGnIRV~CRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fdkVf~p~~sQ~~VF 378 (670)
T KOG0239|consen 301 ERRKLHNEILEL--KGNIRVFCRVRPLLPSEKQRLQSKVIDTEEQGEVQVDSPDKGDKLEPQSFKFDKVFGPLASQDDVF 378 (670)
T ss_pred HHHHHHHHHHHh--hcCceEEEEecCCCccccccccccccccCCcceeEeecCCCCCCCccccceeeeecCCcccHHHHH
Confidence 455677777775 89999999999999988773 33344343331 233333332 223599999999999999999
Q ss_pred cccchhhHhhhhCCCceeEeeeeccCCCCceecCC-CCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEe
Q psy17370 158 TIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDS-TLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVD 229 (262)
Q Consensus 158 ~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G-~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~D 229 (262)
+++. |+|..+|+|||+||||||||||||||||.| .++++|||||++++||..+.. -.|.+.++++||| |+|
T Consensus 379 ~e~~-~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~Giipral~~lF~~~~~~~~g~~y~~~~s~~EIYNe~i~D 457 (670)
T KOG0239|consen 379 EEVS-PLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDPGIIPRALEKLFRTITSLKSGWKYDKTVSMLEIYNEAIRD 457 (670)
T ss_pred HHHH-HHHHHHhcCcceeEEEecccCCCccccccCCCcccCCccHHHHHHHHHHHHhhccCceEEeeeehhHHHHHHHHH
Confidence 9955 999999999999999999999999999999 689999999999999987764 3788899999999 999
Q ss_pred cCC-----CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 230 FGC-----GSWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 230 ll~-----~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
||. ..+.|+++.++.++|.+++..+|.+.+|++
T Consensus 458 lL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~ 495 (670)
T KOG0239|consen 458 LLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVD 495 (670)
T ss_pred hccccccccceeEEEcCCCceecccceEEecCCHHHHH
Confidence 884 467999999999999999999999998873
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=1.2e-35 Score=272.76 Aligned_cols=164 Identities=29% Similarity=0.419 Sum_probs=146.5
Q ss_pred CeEEEEEeCCCCccccC-CCcceEEEcCCc-eEEEEcC---CCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCc
Q psy17370 99 RMTVAVRIRPLLVKELH-MDVSSIEISPDR-REMKVND---NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYN 173 (262)
Q Consensus 99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~-~~i~~~~---~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n 173 (262)
+|+|+||+||+...|.. +..+++.+.++. ..+.+.. ....+.|.||+||+++++|++||+.++.|+|+.+++|+|
T Consensus 1 ~v~v~vRvrP~~~~e~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~ 80 (335)
T smart00129 1 NIRVVVRVRPLNKREKSRKSPSVVPFDDKDGKTLNVNSPKNRKEEKKFTFDKVFGATASQEDVFEETAAPLVDSVLEGYN 80 (335)
T ss_pred CcEEEEEcCcCCccchhcCCceEEEEcCCCCCEEEEeCCCCCCCCeEEecCEEECCCCChHHHHHHHHHHHHHHHhcCCc
Confidence 58999999999999876 677788886653 3444332 237799999999999999999999999999999999999
Q ss_pred eeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC---CCceeeecCCC
Q psy17370 174 VCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC---GSWRFESKPSH 243 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~~~ 243 (262)
+|||+||++||||||||+|+..++|||||++++||..+.+ ..+.|+|||+||| ++||+. ..++|+++..+
T Consensus 81 ~~i~~yG~tgSGKT~tl~G~~~~~Gli~~~~~~Lf~~~~~~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~ 160 (335)
T smart00129 81 ATIFAYGQTGSGKTYTMSGTPDSPGIIPRALKDLFEKIDKLEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKG 160 (335)
T ss_pred eeEEEeCCCCCCCceEecCCCCCCCHHHHHHHHHHHHhhhcccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCC
Confidence 9999999999999999999999999999999999998865 3799999999999 999984 67899999999
Q ss_pred cEEEcCceEEecCChhhhC
Q psy17370 244 EIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 244 ~v~v~gl~~~~V~s~~e~l 262 (262)
++++.|++++.|.|++|++
T Consensus 161 ~~~i~~l~~~~v~s~~e~~ 179 (335)
T smart00129 161 GVYVKGLTEISVSSFEEVY 179 (335)
T ss_pred CEEecCCEEEEeCCHHHHH
Confidence 9999999999999999874
No 23
>KOG0246|consensus
Probab=100.00 E-value=6e-36 Score=280.08 Aligned_cols=170 Identities=22% Similarity=0.278 Sum_probs=149.6
Q ss_pred cCCCCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEE--------cCCCCceeeeeceeeCCCCCcchhhcccchh
Q psy17370 93 DNLECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKV--------NDNAKSYTFKLDHCLGQDTDQTSVFTIIAQP 163 (262)
Q Consensus 93 ~~~~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~--------~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~p 163 (262)
+....+.|.||||.||++..|.. .+..+|.+..+...+.. ...-+++.|.||++||+.+++++||.-+++|
T Consensus 203 ~~v~ehrI~VCVRKRPLnkkE~~~keiDvisvps~~~l~vHEpk~kVDLtkYlEn~~F~FDyaFDe~~sNe~VYrfTa~P 282 (676)
T KOG0246|consen 203 DGVNEHRICVCVRKRPLNKKELTKKEIDVISVPSKNVLVVHEPKLKVDLTKYLENQKFRFDYAFDESASNELVYRFTAKP 282 (676)
T ss_pred CCCccceEEEEeecCCCCchhccccccceEeccccceEEeeccccccchHHHHhhceEEEeeecccccchHHHHHHhhhH
Confidence 45567899999999999999987 66667777544443332 2233899999999999999999999999999
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceecCCCC------CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEe
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVD 229 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~D 229 (262)
||+.+|+|.-+||||||||||||||||.|+. ...||.-++.+|+|..+.. .++.++++||||| +||
T Consensus 283 lV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p~Y~~~~l~v~~tFFEIYgGKvfD 362 (676)
T KOG0246|consen 283 LVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQPTYRKLDLKVYVTFFEIYGGKVYD 362 (676)
T ss_pred HHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhcccchhhcceEEEEEEEEEeCcchhh
Confidence 9999999999999999999999999999986 5679999999999988875 4888999999999 999
Q ss_pred cCC--CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 230 FGC--GSWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 230 ll~--~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
||+ .+|.++||.+..|.|.||+|..|.+.+|+|
T Consensus 363 LL~~k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl 397 (676)
T KOG0246|consen 363 LLNDKKKLRVLEDGNQQVQVVGLQEEEVSGVEEVL 397 (676)
T ss_pred hhccccceEEeecCCceEEEeeceeeeccCHHHHH
Confidence 996 688899999999999999999999999986
No 24
>KOG0241|consensus
Probab=100.00 E-value=1.8e-36 Score=294.38 Aligned_cols=166 Identities=27% Similarity=0.415 Sum_probs=151.0
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC-------CceeeeeceeeC-------CCCCcchhhccc
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA-------KSYTFKLDHCLG-------QDTDQTSVFTII 160 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~-------~~~~f~FD~vf~-------~~~~q~~vy~~~ 160 (262)
.+.+|||.||+||++.+|.. ..+|++.++..++++..++.. ..++|.||++|. ..+.|+.||+..
T Consensus 2 s~~kVkVaVRVRP~nrREl~l~tk~vv~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~l 81 (1714)
T KOG0241|consen 2 SDAKVKVAVRVRPMNRRELELSTKCVVEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCL 81 (1714)
T ss_pred CCcceEEEEEecccchhhhcccccceEEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhc
Confidence 46789999999999999998 888999999999888776433 678999999993 347899999999
Q ss_pred chhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecC-
Q psy17370 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFG- 231 (262)
Q Consensus 161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll- 231 (262)
...+|+.+|+|||+||||||||||||||||+|..+++|||||.++.||..+.+ ..|+|.|||+||| ++|||
T Consensus 82 G~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeVSymEIynEkv~DLLd 161 (1714)
T KOG0241|consen 82 GEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQPGIIPRLCESLFERIDKESNPSQTFKVEVSYMEIYNEKVRDLLD 161 (1714)
T ss_pred chHHHHHHhhccceeeEEecccCCCceeEeeccCCCCCchhHHHHHHHHHHHhccCCCceEEEEEEHHHHhhcchhhhhC
Confidence 99999999999999999999999999999999999999999999999999874 4899999999999 77776
Q ss_pred ----CCCceeeecCCCcEEEcCceEEecCChhhh
Q psy17370 232 ----CGSWRFESKPSHEIYLSVSVLTDITKFIEV 261 (262)
Q Consensus 232 ----~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~ 261 (262)
+..|+++++.-.|.|++||++..|.|.+|+
T Consensus 162 Pk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdI 195 (1714)
T KOG0241|consen 162 PKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDI 195 (1714)
T ss_pred CCCCcceeEEeecccccccccchhhhhcccHHHH
Confidence 467899999999999999999999999874
No 25
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=5.6e-35 Score=268.12 Aligned_cols=158 Identities=25% Similarity=0.387 Sum_probs=134.1
Q ss_pred EeCCCCccccC-CCcceEEEcCCce--EEEE---cCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEee
Q psy17370 105 RIRPLLVKELH-MDVSSIEISPDRR--EMKV---NDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFA 178 (262)
Q Consensus 105 RiRP~~~~E~~-~~~~~i~~~~~~~--~i~~---~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifa 178 (262)
|+||++..|.. .....+.+..... .... ........|.||+||+++++|++||+.++.|+|+.+|+|+|+||||
T Consensus 1 RvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~a 80 (335)
T PF00225_consen 1 RVRPLNESEKESSAESIVSVDNQDSNQNKQSVNSNNSQKEKSFRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFA 80 (335)
T ss_dssp EEES-CHHHHHTTTEBCEEEETTETEEEEEETTEEETTEEEEEEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEE
T ss_pred CcCCCCHHHHhCCCcEEEEecCCccccccccccccCCCCceEEEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEe
Confidence 89999999987 5555555542111 1111 1223789999999999999999999999999999999999999999
Q ss_pred eeccCCCCceecCCC--CCCCchHhhhhhccccccCc------cceEEEEEEEEEE---EEecCCCC-------ceeeec
Q psy17370 179 YGQTGSGKSYRGDST--LNSSVLRPRVLFYPGFSWSH------SGWTGWVSCVVVI---AVDFGCGS-------WRFESK 240 (262)
Q Consensus 179 YG~tgSGKTyTm~G~--~~~~Giipr~~~~lf~~~~~------~~~~~~vS~~EIy---l~Dll~~~-------l~i~ed 240 (262)
||+|||||||||+|+ ..++|||||++++||..++. ..+.|+|||+||| ++|||... ++|++|
T Consensus 81 yG~tgSGKT~Tm~G~~~~~~~Gli~~~~~~lf~~~~~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~ 160 (335)
T PF00225_consen 81 YGQTGSGKTYTMFGSNDPSEPGLIPRALRDLFSQIEERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIRED 160 (335)
T ss_dssp EESTTSSHHHHHTBSTSTTTBSHHHHHHHHHHHHHHHHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEE
T ss_pred eccccccccccccccccccccchhhhHHHHHhhhhccccccccccccccccchhhhhhhhhhhcCccccccccccceeec
Confidence 999999999999999 89999999999999998875 3689999999999 99999754 899999
Q ss_pred CCCc-EEEcCceEEecCChhhhC
Q psy17370 241 PSHE-IYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 241 ~~~~-v~v~gl~~~~V~s~~e~l 262 (262)
...| +++.|++++.|.+.+|++
T Consensus 161 ~~~g~~~i~~l~~~~v~s~~~~~ 183 (335)
T PF00225_consen 161 SNKGSVYIKGLTEVEVKSAEEAL 183 (335)
T ss_dssp TTTEEEEETTSEEEEESSHHHHH
T ss_pred cccccceeecccccccccccccc
Confidence 9866 999999999999999874
No 26
>KOG0247|consensus
Probab=99.97 E-value=2.4e-32 Score=262.09 Aligned_cols=164 Identities=22% Similarity=0.281 Sum_probs=141.3
Q ss_pred CCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcC-----------CCCceeeeeceeeCCCCCcchhhcccchhhH
Q psy17370 97 CSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVND-----------NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLL 165 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~-----------~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv 165 (262)
...|.|+||+||+... .++..++.+.++.+.+...+ ..-.+.|.|.+||+++++|.+||+.++.|+|
T Consensus 30 ~d~v~v~~rvrP~~~~--~~~~g~l~v~n~~tivL~~P~d~~~~~~~n~~q~e~~fsFt~VF~p~~tQ~dvF~~~~~plV 107 (809)
T KOG0247|consen 30 KDPVLVVCRVRPLSDA--SEDEGCLRVINEETIVLETPEDSFARRSVNGGQMEKKFSFTKVFGPSVTQADVFDTTVAPLV 107 (809)
T ss_pred hcchheeEeecCCCCC--ccccceEEEeccceeEeeCcHHHHhhhccCccceeeEeeeeeecCCCccHHHHHHHHhHHHH
Confidence 5689999999999852 24566777777666655522 2256889999999999999999999999999
Q ss_pred hhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc--------------------------------
Q psy17370 166 DAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-------------------------------- 213 (262)
Q Consensus 166 ~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-------------------------------- 213 (262)
.++|.|.|..+|.||.|||||||||+|++.++||+||+|+.||..+.+
T Consensus 108 ~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GIlPR~Ld~iF~siq~~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~ 187 (809)
T KOG0247|consen 108 KDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGILPRALDVIFNSIQGRQAKKPVFKPLRSNLFEIKAEEDALLQLKREA 187 (809)
T ss_pred HHHHcccceeEEEeeccCCCceEEeecCCCCCCchHHHHHHHHHHhhceeccCceeccccchHHHHHHHHHHHHhhhhhh
Confidence 999999999999999999999999999999999999999999876442
Q ss_pred ------------------------------------cceEEEEEEEEEE---EEecCCCC---------ceeeecCCCcE
Q psy17370 214 ------------------------------------SGWTGWVSCVVVI---AVDFGCGS---------WRFESKPSHEI 245 (262)
Q Consensus 214 ------------------------------------~~~~~~vS~~EIy---l~Dll~~~---------l~i~ed~~~~v 245 (262)
..|.|||||+||| |||||-+. ..+++|.++.+
T Consensus 188 ~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EIYN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~ 267 (809)
T KOG0247|consen 188 MLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEIYNNYIYDLLEDASFQGKLQKLKLLREDTNGNM 267 (809)
T ss_pred ccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHHHHHHHHHhhccccccchhhhhhhhhhccCCCe
Confidence 1478999999999 99998422 57789999999
Q ss_pred EEcCceEEecCChhhhC
Q psy17370 246 YLSVSVLTDITKFIEVY 262 (262)
Q Consensus 246 ~v~gl~~~~V~s~~e~l 262 (262)
||.|++++.|.+.+|+|
T Consensus 268 ~Vkgl~~V~VssseEA~ 284 (809)
T KOG0247|consen 268 YVKGLTEVEVSSSEEAL 284 (809)
T ss_pred eeccccEEEeccHHHHH
Confidence 99999999999999975
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=99.94 E-value=9.8e-28 Score=233.57 Aligned_cols=159 Identities=21% Similarity=0.296 Sum_probs=133.6
Q ss_pred CCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeE
Q psy17370 97 CSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCL 176 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~i 176 (262)
-..++++++..|-...+ .+....+...+..... ....|.||+||++.++|++||+..++++++.++.||||||
T Consensus 21 ~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~Tv 93 (568)
T COG5059 21 VSDIKSTIRIIPGELGE------RLINTSKKSHVSLEKS-KEGTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTV 93 (568)
T ss_pred ecCceEEEeecCCCcch------heeecccccccccccc-cceEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceE
Confidence 46789999999976542 1222222222222211 2678999999999999999999999999999999999999
Q ss_pred eeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCCCCc---eeeecCCCcEE
Q psy17370 177 FAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGCGSW---RFESKPSHEIY 246 (262)
Q Consensus 177 faYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~~~l---~i~ed~~~~v~ 246 (262)
|||||||+||||||.|...++||||+++.+||..+++ ..+.+.+||+||| ++||+..+. .+++|..++|+
T Consensus 94 fayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~ 173 (568)
T COG5059 94 FAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVK 173 (568)
T ss_pred EEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCcceeeEeehhHHHhhHHHhhccCccccccccccCCCceE
Confidence 9999999999999999999999999999999998875 4799999999999 999885443 48899999999
Q ss_pred EcCceEEecCChhhhC
Q psy17370 247 LSVSVLTDITKFIEVY 262 (262)
Q Consensus 247 v~gl~~~~V~s~~e~l 262 (262)
+.|+++..+.+.+|+|
T Consensus 174 v~~l~~~~~~s~ee~l 189 (568)
T COG5059 174 VAGLTEKHVSSKEEIL 189 (568)
T ss_pred eecceEEecCChHHHH
Confidence 9999999999999875
No 28
>KOG0244|consensus
Probab=99.89 E-value=1e-24 Score=214.78 Aligned_cols=152 Identities=24% Similarity=0.315 Sum_probs=132.7
Q ss_pred eCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCC
Q psy17370 106 IRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGS 184 (262)
Q Consensus 106 iRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgS 184 (262)
+||+...|.. ++..|+.+.+...+|.+. ....|+||+||+....|.++|+.++.+|++.+|+|||++++|||||||
T Consensus 1 vRpl~~~e~~~g~~~c~~~~~~~pqv~ig---~~~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgs 77 (913)
T KOG0244|consen 1 VRPLKQMEEEQGCRRCTEVSPRTPQVAIG---KDASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGS 77 (913)
T ss_pred CCCccchHHHhcchhhcccCCCCCceeec---CCcceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCC
Confidence 6899988877 777777766666666554 578999999999999999999999999999999999999999999999
Q ss_pred CCceecCCCC----CCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC-----CCceeeecCCCcEEEcC
Q psy17370 185 GKSYRGDSTL----NSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC-----GSWRFESKPSHEIYLSV 249 (262)
Q Consensus 185 GKTyTm~G~~----~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~-----~~l~i~ed~~~~v~v~g 249 (262)
||||||.+.. ...|+|||+++.||.++.+ ..+.|.|+|+||| ++||++ .++++++ +++++.+.|
T Consensus 78 gkTytmgt~~~~~~~~~Gvipr~v~~~f~~i~~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~g 156 (913)
T KOG0244|consen 78 GKTYTMGTNDAPAQDTVGVIPRAVSTLFTRIGKTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRG 156 (913)
T ss_pred CceeecccccccccccCCcCcchHHHHHHHHHhhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEe
Confidence 9999998883 4469999999999998865 4689999999999 888885 5578888 788999999
Q ss_pred ceEEecCChhhh
Q psy17370 250 SVLTDITKFIEV 261 (262)
Q Consensus 250 l~~~~V~s~~e~ 261 (262)
+++..|....++
T Consensus 157 lte~tv~~~~q~ 168 (913)
T KOG0244|consen 157 LTEKTVRMKLQL 168 (913)
T ss_pred ehHHHHHHHHHH
Confidence 999998877765
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=99.71 E-value=2.9e-18 Score=145.26 Aligned_cols=53 Identities=45% Similarity=0.768 Sum_probs=50.5
Q ss_pred hhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhcccc
Q psy17370 156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGF 209 (262)
Q Consensus 156 vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~ 209 (262)
||+.++ |+|+.+++|+|+|||+||||||||||||+|+..+.||||+++++++.
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Giip~~~~~~~~ 60 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTVTDVID 60 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCcchHHHHHHHH
Confidence 999999 99999999999999999999999999999999999999999997633
No 30
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=95.67 E-value=0.014 Score=56.57 Aligned_cols=83 Identities=20% Similarity=0.178 Sum_probs=51.1
Q ss_pred eeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecCC------CC-----CCCchHhhhhhcc
Q psy17370 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDS------TL-----NSSVLRPRVLFYP 207 (262)
Q Consensus 139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G------~~-----~~~Giipr~~~~l 207 (262)
..|....-|.|.-+|-. .+..|++.+-+|..--+ -.|.|||||||||-- -+ .+.-+--....++
T Consensus 3 ~~F~l~s~f~PaGDQP~----AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~Ef 77 (663)
T COG0556 3 KPFKLHSPFKPAGDQPE----AIAELVEGIENGLKHQT-LLGVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSEF 77 (663)
T ss_pred CceEeccCCCCCCCcHH----HHHHHHHHHhcCceeeE-EeeeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHHH
Confidence 35777777888888865 34566777666654333 359999999999931 11 1222222222221
Q ss_pred ccccCccceEEEEEEEEEE
Q psy17370 208 GFSWSHSGWTGWVSCVVVI 226 (262)
Q Consensus 208 f~~~~~~~~~~~vS~~EIy 226 (262)
-.-+-+..+++.|||+..|
T Consensus 78 k~fFP~NaVEYFVSYYDYY 96 (663)
T COG0556 78 KEFFPENAVEYFVSYYDYY 96 (663)
T ss_pred HHhCcCcceEEEeeecccc
Confidence 1112357888999999888
No 31
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=94.97 E-value=0.0091 Score=51.80 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=30.3
Q ss_pred eeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
..|+||.-+. ...++..|.. +..+.+.--..+| .+|-||.+|+||||-|.
T Consensus 3 ~~~tFdnfv~-g~~N~~a~~~-~~~ia~~~~~~~~-~l~l~G~~G~GKTHLL~ 52 (219)
T PF00308_consen 3 PKYTFDNFVV-GESNELAYAA-AKAIAENPGERYN-PLFLYGPSGLGKTHLLQ 52 (219)
T ss_dssp TT-SCCCS---TTTTHHHHHH-HHHHHHSTTTSSS-EEEEEESTTSSHHHHHH
T ss_pred CCCccccCCc-CCcHHHHHHH-HHHHHhcCCCCCC-ceEEECCCCCCHHHHHH
Confidence 4689998663 3456666654 3244444222234 47889999999999663
No 32
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=93.20 E-value=0.039 Score=50.25 Aligned_cols=30 Identities=27% Similarity=0.300 Sum_probs=26.7
Q ss_pred chhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+-+++..+++-.++.|+.-|+|||||+.||
T Consensus 113 lP~i~~~~~~~~~GLILVTGpTGSGKSTTl 142 (353)
T COG2805 113 LPPIVRELAESPRGLILVTGPTGSGKSTTL 142 (353)
T ss_pred CCHHHHHHHhCCCceEEEeCCCCCcHHHHH
Confidence 346677888999999999999999999998
No 33
>PRK06893 DNA replication initiation factor; Validated
Probab=93.10 E-value=0.046 Score=47.62 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=30.9
Q ss_pred ceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 138 SYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 138 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
...++||..+... ++.. +.-+...+-+++|..++-||.+|+||||-+.
T Consensus 10 ~~~~~fd~f~~~~-~~~~-----~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ 57 (229)
T PRK06893 10 IDDETLDNFYADN-NLLL-----LDSLRKNFIDLQQPFFYIWGGKSSGKSHLLK 57 (229)
T ss_pred CCcccccccccCC-hHHH-----HHHHHHHhhccCCCeEEEECCCCCCHHHHHH
Confidence 4567888888543 2211 1122223334677788999999999999774
No 34
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.55 E-value=0.048 Score=52.66 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=27.2
Q ss_pred chhhHhhhhCCCceeEeeeeccCCCCceecCC
Q psy17370 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDS 192 (262)
Q Consensus 161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G 192 (262)
-...+..+++.-++.|+.-|+||||||.||+.
T Consensus 246 ~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~ 277 (500)
T COG2804 246 QLARLLRLLNRPQGLILVTGPTGSGKTTTLYA 277 (500)
T ss_pred HHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34566778889999999999999999999963
No 35
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=91.96 E-value=0.055 Score=53.79 Aligned_cols=52 Identities=23% Similarity=0.339 Sum_probs=34.5
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
-+..|+||..+-. .+++..|.. +..+++..-.++|. ||-||.+|+||||-+.
T Consensus 281 L~~~~TFDnFvvG-~sN~~A~aa-a~avae~~~~~~Np-L~LyG~sGsGKTHLL~ 332 (617)
T PRK14086 281 LNPKYTFDTFVIG-ASNRFAHAA-AVAVAEAPAKAYNP-LFIYGESGLGKTHLLH 332 (617)
T ss_pred CCCCCCHhhhcCC-CccHHHHHH-HHHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence 4567899886633 345555533 33555543345675 8999999999999874
No 36
>PRK09087 hypothetical protein; Validated
Probab=91.88 E-value=0.075 Score=46.31 Aligned_cols=49 Identities=18% Similarity=0.185 Sum_probs=31.7
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
....|+||.-+.. ..+..+|.. +.....-.+..++=||.+||||||-+.
T Consensus 14 ~~~~~~~~~Fi~~-~~N~~a~~~-----l~~~~~~~~~~l~l~G~~GsGKThLl~ 62 (226)
T PRK09087 14 HDPAYGRDDLLVT-ESNRAAVSL-----VDHWPNWPSPVVVLAGPVGSGKTHLAS 62 (226)
T ss_pred CCCCCChhceeec-CchHHHHHH-----HHhcccCCCCeEEEECCCCCCHHHHHH
Confidence 4556788887743 334446663 333222235558899999999999885
No 37
>PRK06620 hypothetical protein; Validated
Probab=91.73 E-value=0.059 Score=46.58 Aligned_cols=52 Identities=23% Similarity=0.349 Sum_probs=33.4
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCc---eeEeeeeccCCCCceecCC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYN---VCLFAYGQTGSGKSYRGDS 192 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n---~~ifaYG~tgSGKTyTm~G 192 (262)
.+..|+||..+ ...+|...|.... .+.+. -|+| -.++=||+.|+||||-+..
T Consensus 9 ~~~~~tfd~Fv-vg~~N~~a~~~~~-~~~~~--~~~~~~~~~l~l~Gp~G~GKThLl~a 63 (214)
T PRK06620 9 TSSKYHPDEFI-VSSSNDQAYNIIK-NWQCG--FGVNPYKFTLLIKGPSSSGKTYLTKI 63 (214)
T ss_pred CCCCCCchhhE-ecccHHHHHHHHH-HHHHc--cccCCCcceEEEECCCCCCHHHHHHH
Confidence 45578899877 3344555665543 22221 1333 3589999999999998853
No 38
>PRK05642 DNA replication initiation factor; Validated
Probab=90.94 E-value=0.099 Score=45.69 Aligned_cols=48 Identities=10% Similarity=0.153 Sum_probs=29.0
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhCC----CceeEeeeeccCCCCceecC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNG----YNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G----~n~~ifaYG~tgSGKTyTm~ 191 (262)
-+..|+||.-+... +.. +...++...++ .+..++-||.+|+||||-+.
T Consensus 12 ~~~~~tfdnF~~~~--~~~-----a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~ 63 (234)
T PRK05642 12 LRDDATFANYYPGA--NAA-----ALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQ 63 (234)
T ss_pred CCCcccccccCcCC--hHH-----HHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHH
Confidence 34568888877331 222 33444433222 12467889999999999764
No 39
>PRK06526 transposase; Provisional
Probab=90.04 E-value=0.13 Score=45.65 Aligned_cols=40 Identities=13% Similarity=0.172 Sum_probs=23.9
Q ss_pred eCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 147 LGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 147 f~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
+.+...+..+..-.....++ .+.| |+-||++|+||||.+.
T Consensus 77 ~~~~~~~~~~~~l~~~~fi~---~~~n--lll~Gp~GtGKThLa~ 116 (254)
T PRK06526 77 HQRSLKRDTIAHLGTLDFVT---GKEN--VVFLGPPGTGKTHLAI 116 (254)
T ss_pred cCCCcchHHHHHHhcCchhh---cCce--EEEEeCCCCchHHHHH
Confidence 33444444444333333332 3444 6889999999999875
No 40
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=89.91 E-value=0.11 Score=49.92 Aligned_cols=51 Identities=18% Similarity=0.286 Sum_probs=34.1
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
-+..|+||.-.. ...+...|..+. .+.+. -..+|. +|-||.+|+||||-|.
T Consensus 98 l~~~~tFdnFv~-g~~n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl~ 148 (440)
T PRK14088 98 LNPDYTFENFVV-GPGNSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLLQ 148 (440)
T ss_pred CCCCCccccccc-CCchHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence 466799998774 345666666533 33332 112564 9999999999999884
No 41
>PRK08084 DNA replication initiation factor; Provisional
Probab=89.10 E-value=0.17 Score=44.21 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=30.5
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
....|+||.-+.. .|...+.... .+.. ......++-||+.|+||||-+.
T Consensus 15 ~~~~~~fd~f~~~--~n~~a~~~l~-~~~~---~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 15 LPDDETFASFYPG--DNDSLLAALQ-NALR---QEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCCcCCccccccC--ccHHHHHHHH-HHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence 3456788865533 5666554322 2221 2222468999999999999884
No 42
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=88.73 E-value=0.16 Score=41.24 Aligned_cols=19 Identities=26% Similarity=0.251 Sum_probs=14.9
Q ss_pred ceeEeeeeccCCCCceecC
Q psy17370 173 NVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~ 191 (262)
...++..+.||||||++|.
T Consensus 25 ~~~~ll~~~tGsGKT~~~~ 43 (184)
T PF04851_consen 25 ERRVLLNAPTGSGKTIIAL 43 (184)
T ss_dssp CSEEEEEESTTSSHHHHHH
T ss_pred CCCEEEEECCCCCcChhhh
Confidence 3445556799999999996
No 43
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=88.68 E-value=0.16 Score=48.84 Aligned_cols=49 Identities=22% Similarity=0.320 Sum_probs=31.0
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.|+||.-... .+++..|.. ++.+++.-=..+| -+|-||.+|+||||-|.
T Consensus 111 ~~tFdnFv~g-~~n~~A~~a-a~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~ 159 (450)
T PRK14087 111 ENTFENFVIG-SSNEQAFIA-VQTVSKNPGISYN-PLFIYGESGMGKTHLLK 159 (450)
T ss_pred ccchhcccCC-CcHHHHHHH-HHHHHhCcCcccC-ceEEECCCCCcHHHHHH
Confidence 5899986633 355666643 3344332111234 47899999999999884
No 44
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=88.43 E-value=0.19 Score=46.29 Aligned_cols=49 Identities=20% Similarity=0.287 Sum_probs=30.8
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhhhhC-CCceeEeeeeccCCCCceec
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFN-GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~-G~n~~ifaYG~tgSGKTyTm 190 (262)
|.-|++...-...++-++.+. ..+..+++ +....++-||+.|+|||+++
T Consensus 8 l~~~~~p~~l~gRe~e~~~l~-~~l~~~~~~~~~~~i~I~G~~GtGKT~l~ 57 (365)
T TIGR02928 8 LEPDYVPDRIVHRDEQIEELA-KALRPILRGSRPSNVFIYGKTGTGKTAVT 57 (365)
T ss_pred CCCCCCCCCCCCcHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 334444444455555555544 33444454 44567899999999999987
No 45
>PRK12377 putative replication protein; Provisional
Probab=88.18 E-value=0.21 Score=44.26 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=32.4
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.+||.-......|..++.. +..+++.+..+. ..++-||.+|+||||.+.
T Consensus 71 ~tFdnf~~~~~~~~~a~~~-a~~~a~~~~~~~-~~l~l~G~~GtGKThLa~ 119 (248)
T PRK12377 71 CSFANYQVQNDGQRYALSQ-AKSIADELMTGC-TNFVFSGKPGTGKNHLAA 119 (248)
T ss_pred CCcCCcccCChhHHHHHHH-HHHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence 3566654444556666654 445666665554 457788999999999874
No 46
>PRK08116 hypothetical protein; Validated
Probab=87.76 E-value=0.18 Score=45.17 Aligned_cols=53 Identities=25% Similarity=0.375 Sum_probs=34.4
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhC--CCceeEeeeeccCCCCceecC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN--GYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~--G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.-..++||.-. ....+...|.. +...++.+.+ ..+..++-||.+|+||||-+.
T Consensus 78 ~~~~~tFdnf~-~~~~~~~a~~~-a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~ 132 (268)
T PRK08116 78 KFRNSTFENFL-FDKGSEKAYKI-ARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA 132 (268)
T ss_pred HHHhcchhccc-CChHHHHHHHH-HHHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence 34456777644 34555555554 4455665543 334568899999999999874
No 47
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=87.75 E-value=0.2 Score=47.33 Aligned_cols=52 Identities=21% Similarity=0.293 Sum_probs=31.3
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
-+..|+||.-.- ...+...|.. ++.+.+..-..+| .++-||.+|+||||-+.
T Consensus 103 l~~~~tfd~fi~-g~~n~~a~~~-~~~~~~~~~~~~n-~l~l~G~~G~GKThL~~ 154 (405)
T TIGR00362 103 LNPKYTFDNFVV-GKSNRLAHAA-ALAVAENPGKAYN-PLFIYGGVGLGKTHLLH 154 (405)
T ss_pred CCCCCccccccc-CCcHHHHHHH-HHHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence 446788888442 3455555544 2233333111234 47789999999999874
No 48
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=87.17 E-value=0.23 Score=47.65 Aligned_cols=52 Identities=19% Similarity=0.273 Sum_probs=31.6
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
-...|+||.-.. ...+...|..+ +.+.+.--..+| .++-||.+|+||||.+.
T Consensus 115 l~~~~tfd~fv~-g~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~ 166 (450)
T PRK00149 115 LNPKYTFDNFVV-GKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLH 166 (450)
T ss_pred CCCCCccccccc-CCCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence 456788887442 33555555542 233332212334 47889999999999883
No 49
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=87.11 E-value=0.27 Score=45.79 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=27.2
Q ss_pred ceeeCCCCCcchhhcccchhhHhhhhC-CCceeEeeeeccCCCCceec
Q psy17370 144 DHCLGQDTDQTSVFTIIAQPLLDAAFN-GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 144 D~vf~~~~~q~~vy~~~~~plv~~~l~-G~n~~ifaYG~tgSGKTyTm 190 (262)
+.+.+.-...++-++... ..+...++ +....++-||+.|+|||+++
T Consensus 26 ~~~P~~l~~Re~e~~~l~-~~l~~~~~~~~~~~~lI~G~~GtGKT~l~ 72 (394)
T PRK00411 26 DYVPENLPHREEQIEELA-FALRPALRGSRPLNVLIYGPPGTGKTTTV 72 (394)
T ss_pred CCcCCCCCCHHHHHHHHH-HHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence 333333334444444433 33334443 44456889999999999987
No 50
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=86.56 E-value=0.29 Score=37.49 Aligned_cols=19 Identities=32% Similarity=0.482 Sum_probs=15.5
Q ss_pred CceeEeeeeccCCCCceec
Q psy17370 172 YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm 190 (262)
....++-+|.+|+|||+.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~ 36 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLA 36 (151)
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 3446788999999999866
No 51
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=86.15 E-value=0.24 Score=42.63 Aligned_cols=15 Identities=47% Similarity=0.663 Sum_probs=12.8
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-+|.||||||+|+
T Consensus 26 ~~I~G~TGsGKS~~~ 40 (229)
T PF01935_consen 26 IAIFGTTGSGKSNTV 40 (229)
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999998
No 52
>PRK07952 DNA replication protein DnaC; Validated
Probab=85.97 E-value=0.34 Score=42.80 Aligned_cols=50 Identities=10% Similarity=0.154 Sum_probs=30.4
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
..+||.-......|..++..+ ...++.+..+. ..++-||.+|+||||.+.
T Consensus 68 ~~tFdnf~~~~~~q~~al~~a-~~~~~~~~~~~-~~~~l~G~~GtGKThLa~ 117 (244)
T PRK07952 68 NCSFENYRVECEGQMNALSKA-RQYVEEFDGNI-ASFIFSGKPGTGKNHLAA 117 (244)
T ss_pred CCccccccCCCchHHHHHHHH-HHHHHhhccCC-ceEEEECCCCCCHHHHHH
Confidence 456665443334455555543 34444443443 367889999999999874
No 53
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=85.96 E-value=0.26 Score=37.31 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=14.1
Q ss_pred EeeeeccCCCCceecCC
Q psy17370 176 LFAYGQTGSGKSYRGDS 192 (262)
Q Consensus 176 ifaYG~tgSGKTyTm~G 192 (262)
++.+|.+|+|||+++..
T Consensus 3 ~~i~~~~G~GKT~~~~~ 19 (144)
T cd00046 3 VLLAAPTGSGKTLAALL 19 (144)
T ss_pred EEEECCCCCchhHHHHH
Confidence 45689999999998854
No 54
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=85.68 E-value=0.36 Score=41.50 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=28.6
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
....|+||..+.. .++.+... +..++.. ...+..++-||..|+||||-+
T Consensus 11 ~~~~~~~d~f~~~--~~~~~~~~-l~~~~~~--~~~~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 11 PPPPPTFDNFVAG--ENAELVAR-LRELAAG--PVADRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCChhhhcccccC--CcHHHHHH-HHHHHhc--cCCCCeEEEECCCCCCHHHHH
Confidence 3445888887722 22233221 2232221 133457889999999999976
No 55
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=85.26 E-value=0.34 Score=47.14 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=22.7
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.+..++...++.|+-.|+||||||.||.
T Consensus 233 ~l~~~~~~~~GlilitGptGSGKTTtL~ 260 (486)
T TIGR02533 233 RFERLIRRPHGIILVTGPTGSGKTTTLY 260 (486)
T ss_pred HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence 4455667777888899999999999994
No 56
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=85.20 E-value=0.38 Score=38.67 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=20.0
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.++..+++|.+ ++..|+||+|||....
T Consensus 6 ~~~~~i~~~~~--~li~aptGsGKT~~~~ 32 (169)
T PF00270_consen 6 EAIEAIISGKN--VLISAPTGSGKTLAYI 32 (169)
T ss_dssp HHHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred HHHHHHHcCCC--EEEECCCCCccHHHHH
Confidence 34555666777 6678899999999764
No 57
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=85.04 E-value=0.3 Score=48.37 Aligned_cols=28 Identities=29% Similarity=0.256 Sum_probs=23.2
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.+..++..-++.|+-.|.||||||.||.
T Consensus 307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~ 334 (564)
T TIGR02538 307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY 334 (564)
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence 4556667778899999999999999984
No 58
>PRK08181 transposase; Validated
Probab=84.89 E-value=0.49 Score=42.43 Aligned_cols=20 Identities=40% Similarity=0.670 Sum_probs=16.1
Q ss_pred CCCceeEeeeeccCCCCceecC
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.|.| ++-||++|+||||-+.
T Consensus 105 ~~~n--lll~Gp~GtGKTHLa~ 124 (269)
T PRK08181 105 KGAN--LLLFGPPGGGKSHLAA 124 (269)
T ss_pred cCce--EEEEecCCCcHHHHHH
Confidence 3554 7889999999999774
No 59
>PRK10436 hypothetical protein; Provisional
Probab=84.78 E-value=0.33 Score=46.93 Aligned_cols=28 Identities=25% Similarity=0.243 Sum_probs=23.1
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.+..++..-++.|+.-|+||||||.||.
T Consensus 209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~ 236 (462)
T PRK10436 209 QFRQALQQPQGLILVTGPTGSGKTVTLY 236 (462)
T ss_pred HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence 3455666778899999999999999994
No 60
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=84.25 E-value=0.32 Score=37.55 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=12.9
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
+.+++-+|.+|+|||..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~ 21 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLI 21 (131)
T ss_dssp ---EEEEE-TTSSHHHHH
T ss_pred CcccEEEcCCCCCHHHHH
Confidence 457889999999999976
No 61
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=84.22 E-value=0.45 Score=42.26 Aligned_cols=49 Identities=24% Similarity=0.174 Sum_probs=29.4
Q ss_pred eeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+.|.+..+-.....+...+.... .+++.+-+|.| ++-||+.|+||||-.
T Consensus 74 k~~~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~n--l~l~G~~G~GKThLa 122 (254)
T COG1484 74 KTFEEFDFEFQPGIDKKALEDLA-SLVEFFERGEN--LVLLGPPGVGKTHLA 122 (254)
T ss_pred CCcccccccCCcchhHHHHHHHH-HHHHHhccCCc--EEEECCCCCcHHHHH
Confidence 34443333334445666666543 55545444444 566999999999966
No 62
>PF13245 AAA_19: Part of AAA domain
Probab=83.95 E-value=0.42 Score=34.39 Aligned_cols=25 Identities=20% Similarity=0.220 Sum_probs=16.6
Q ss_pred hhhhCCCceeEeeeeccCCCCceecC
Q psy17370 166 DAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 166 ~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
...+. .+..+.--|..|||||+|+.
T Consensus 4 ~~al~-~~~~~vv~g~pGtGKT~~~~ 28 (76)
T PF13245_consen 4 RRALA-GSPLFVVQGPPGTGKTTTLA 28 (76)
T ss_pred HHHHh-hCCeEEEECCCCCCHHHHHH
Confidence 33445 23334448999999999874
No 63
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=83.93 E-value=0.4 Score=45.51 Aligned_cols=49 Identities=20% Similarity=0.288 Sum_probs=32.1
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhC---CCceeEeeeeccCCCCceecC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN---GYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~---G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.+..|+||.-. ...+++..|.. ...+-+ +...-||-||.+|+||||-|.
T Consensus 80 l~~~ytFdnFv-~g~~N~~A~aa-----~~~va~~~g~~~nplfi~G~~GlGKTHLl~ 131 (408)
T COG0593 80 LNPKYTFDNFV-VGPSNRLAYAA-----AKAVAENPGGAYNPLFIYGGVGLGKTHLLQ 131 (408)
T ss_pred CCCCCchhhee-eCCchHHHHHH-----HHHHHhccCCcCCcEEEECCCCCCHHHHHH
Confidence 56679999865 44555554433 223332 223468999999999999983
No 64
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=83.74 E-value=0.34 Score=42.91 Aligned_cols=18 Identities=33% Similarity=0.331 Sum_probs=14.6
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
.+.|+--|.||||||.+|
T Consensus 127 ~~~ili~G~tGSGKTT~l 144 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLL 144 (270)
T ss_dssp TEEEEEEESTTSSHHHHH
T ss_pred ceEEEEECCCccccchHH
Confidence 345566699999999998
No 65
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=83.59 E-value=0.47 Score=44.48 Aligned_cols=26 Identities=35% Similarity=0.548 Sum_probs=19.3
Q ss_pred HhhhhCCCce-eEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNV-CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~-~ifaYG~tgSGKTyTm 190 (262)
+..++.|.-. .++-||.+|+|||.++
T Consensus 33 l~~~~~~~~p~n~~iyG~~GTGKT~~~ 59 (366)
T COG1474 33 LAPALRGERPSNIIIYGPTGTGKTATV 59 (366)
T ss_pred HHHHhcCCCCccEEEECCCCCCHhHHH
Confidence 4455554433 3999999999999987
No 66
>PF12846 AAA_10: AAA-like domain
Probab=82.87 E-value=0.41 Score=42.18 Aligned_cols=19 Identities=37% Similarity=0.410 Sum_probs=15.4
Q ss_pred ceeEeeeeccCCCCceecC
Q psy17370 173 NVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~ 191 (262)
|.-++..|.||||||++|.
T Consensus 1 n~h~~i~G~tGsGKT~~~~ 19 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLK 19 (304)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 3456778999999999884
No 67
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=82.60 E-value=0.52 Score=43.61 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=20.6
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.+..++.-..+.|+-.|.||||||.||.
T Consensus 113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~ 140 (343)
T TIGR01420 113 VLRELAERPRGLILVTGPTGSGKSTTLA 140 (343)
T ss_pred HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence 4444554445678888999999999993
No 68
>PRK06835 DNA replication protein DnaC; Validated
Probab=82.59 E-value=0.54 Score=43.42 Aligned_cols=30 Identities=23% Similarity=0.487 Sum_probs=21.9
Q ss_pred chhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
++..++.+-.+. -.++-||++|+||||-+.
T Consensus 172 ~~~f~~~f~~~~-~~Lll~G~~GtGKThLa~ 201 (329)
T PRK06835 172 CKNFIENFDKNN-ENLLFYGNTGTGKTFLSN 201 (329)
T ss_pred HHHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence 335666665444 458899999999999774
No 69
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=82.52 E-value=0.64 Score=38.95 Aligned_cols=17 Identities=35% Similarity=0.567 Sum_probs=14.5
Q ss_pred eEeeeeccCCCCceecC
Q psy17370 175 CLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~ 191 (262)
.++-+|++|+||||-..
T Consensus 49 ~l~l~G~~G~GKThLa~ 65 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAV 65 (178)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEEhhHhHHHHHHHH
Confidence 47889999999999763
No 70
>PRK08727 hypothetical protein; Validated
Probab=82.12 E-value=0.5 Score=41.17 Aligned_cols=18 Identities=28% Similarity=0.383 Sum_probs=15.5
Q ss_pred eeEeeeeccCCCCceecC
Q psy17370 174 VCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm~ 191 (262)
-.++-||.+|+||||-+.
T Consensus 42 ~~l~l~G~~G~GKThL~~ 59 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL 59 (233)
T ss_pred CeEEEECCCCCCHHHHHH
Confidence 358999999999999774
No 71
>PRK08939 primosomal protein DnaI; Reviewed
Probab=82.10 E-value=0.52 Score=43.06 Aligned_cols=50 Identities=28% Similarity=0.289 Sum_probs=30.3
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhhhhCC-CceeEeeeeccCCCCceecC
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNG-YNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G-~n~~ifaYG~tgSGKTyTm~ 191 (262)
.+|+.+-.....+..++..+ ...++....| ..-.++-||.+|+||||-+.
T Consensus 124 atf~~~~~~~~~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~ 174 (306)
T PRK08939 124 ASLADIDLDDRDRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA 174 (306)
T ss_pred CcHHHhcCCChHHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence 34444332223555666643 4566655443 23358899999999999874
No 72
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=81.87 E-value=0.57 Score=41.77 Aligned_cols=28 Identities=21% Similarity=0.253 Sum_probs=21.0
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.+..++..-.+.|+-.|.||||||.+|.
T Consensus 71 ~l~~~~~~~~GlilisG~tGSGKTT~l~ 98 (264)
T cd01129 71 IFRKLLEKPHGIILVTGPTGSGKTTTLY 98 (264)
T ss_pred HHHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence 3455565555667778999999999983
No 73
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=81.71 E-value=0.34 Score=38.58 Aligned_cols=18 Identities=28% Similarity=0.671 Sum_probs=13.7
Q ss_pred ceeEeee-eccCCCCceec
Q psy17370 173 NVCLFAY-GQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaY-G~tgSGKTyTm 190 (262)
...|+++ |.+|+||+|.-
T Consensus 52 KpLVlSfHG~tGtGKn~v~ 70 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVS 70 (127)
T ss_pred CCEEEEeecCCCCcHHHHH
Confidence 3456665 99999999954
No 74
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=80.80 E-value=0.68 Score=43.26 Aligned_cols=23 Identities=35% Similarity=0.304 Sum_probs=18.5
Q ss_pred hCCCceeEeeeeccCCCCceecC
Q psy17370 169 FNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
+.-..+.|+-.|+||||||.||.
T Consensus 130 ~~~~~glilI~GpTGSGKTTtL~ 152 (358)
T TIGR02524 130 IAPQEGIVFITGATGSGKSTLLA 152 (358)
T ss_pred HhccCCEEEEECCCCCCHHHHHH
Confidence 33346788889999999999983
No 75
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=80.69 E-value=0.67 Score=43.54 Aligned_cols=19 Identities=37% Similarity=0.300 Sum_probs=16.2
Q ss_pred CceeEeeeeccCCCCceec
Q psy17370 172 YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm 190 (262)
.++.++-.|+||||||.||
T Consensus 148 ~~GlilI~G~TGSGKTT~l 166 (372)
T TIGR02525 148 AAGLGLICGETGSGKSTLA 166 (372)
T ss_pred cCCEEEEECCCCCCHHHHH
Confidence 3556778999999999998
No 76
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=80.62 E-value=0.62 Score=42.85 Aligned_cols=27 Identities=30% Similarity=0.302 Sum_probs=18.4
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.++..++.+.. .|+-.|.||||||.+|
T Consensus 139 ~~L~~~v~~~~-~ilI~G~tGSGKTTll 165 (319)
T PRK13894 139 EAIIAAVRAHR-NILVIGGTGSGKTTLV 165 (319)
T ss_pred HHHHHHHHcCC-eEEEECCCCCCHHHHH
Confidence 45555555443 4555599999999876
No 77
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=80.56 E-value=0.57 Score=39.73 Aligned_cols=18 Identities=39% Similarity=0.374 Sum_probs=15.4
Q ss_pred eeEeeeeccCCCCceecC
Q psy17370 174 VCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm~ 191 (262)
+.|+-.|+||||||.++.
T Consensus 2 GlilI~GptGSGKTTll~ 19 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLA 19 (198)
T ss_pred cEEEEECCCCCCHHHHHH
Confidence 567778999999999983
No 78
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=79.91 E-value=0.91 Score=39.77 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=27.7
Q ss_pred eeCCCCCcchhhcccchh-h---HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 146 CLGQDTDQTSVFTIIAQP-L---LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 146 vf~~~~~q~~vy~~~~~p-l---v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-|....+...+|...... . +...++.....++-+|+.|+|||+.+
T Consensus 12 pF~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~ 60 (269)
T TIGR03015 12 PFQLLPDPDFFYPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLI 60 (269)
T ss_pred CCCCCCCHHHhCCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHH
Confidence 355555555666655432 2 22233444556778999999999877
No 79
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=79.42 E-value=0.58 Score=44.34 Aligned_cols=92 Identities=18% Similarity=0.261 Sum_probs=50.7
Q ss_pred CeEEEEEeCCCCccccCCCcceEEEcCCceEE--EEcCC----------CCceeeeeceeeCCCCCcchhhcccchhhHh
Q psy17370 99 RMTVAVRIRPLLVKELHMDVSSIEISPDRREM--KVNDN----------AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLD 166 (262)
Q Consensus 99 ~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i--~~~~~----------~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~ 166 (262)
.-+.+|++....+.+.......+.++.....+ .++.. .+....+|+.|-+.+..-+++-+.+..|+..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~ 167 (398)
T PTZ00454 88 GSNYYVRILSTLNRELLKPNASVALHRHSHAVVDILPPEADSSIQLLQMSEKPDVTYSDIGGLDIQKQEIREAVELPLTC 167 (398)
T ss_pred CCEEEEecccccCHhhCCCCCEEEeeccchhHHHhccccccchhhhhcccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcC
Confidence 34677887777766554333333333222111 01110 1334566777777666666666665556553
Q ss_pred h-hhC--C--CceeEeeeeccCCCCceec
Q psy17370 167 A-AFN--G--YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 167 ~-~l~--G--~n~~ifaYG~tgSGKTyTm 190 (262)
. .++ | ....|+-||+.|+|||+..
T Consensus 168 ~~~~~~~Gl~~pkgvLL~GppGTGKT~LA 196 (398)
T PTZ00454 168 PELYEQIGIDPPRGVLLYGPPGTGKTMLA 196 (398)
T ss_pred HHHHHhcCCCCCceEEEECCCCCCHHHHH
Confidence 2 333 2 2345778999999999865
No 80
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=79.04 E-value=0.68 Score=34.91 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=14.0
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-+|.+|+|||..+
T Consensus 4 ~~~l~G~~G~GKTtl~ 19 (148)
T smart00382 4 VILIVGPPGSGKTTLA 19 (148)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4677899999999988
No 81
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=78.54 E-value=1.2 Score=44.96 Aligned_cols=81 Identities=21% Similarity=0.214 Sum_probs=46.8
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCC---CCCch--------Hhhhhhcccc
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTL---NSSVL--------RPRVLFYPGF 209 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~---~~~Gi--------ipr~~~~lf~ 209 (262)
|....-|.|.-.|..-++. |++.+-+|....+ -+|.|||||||+|-.-- ..+-| .-....+|-.
T Consensus 2 f~~~~~~~~~~~Q~~ai~~----l~~~~~~~~~~~~-l~Gvtgs~kt~~~a~~~~~~~~p~Lvi~~n~~~A~ql~~el~~ 76 (655)
T TIGR00631 2 FKLHSPFQPAGDQPKAIAK----LVEGLTDGEKHQT-LLGVTGSGKTFTMANVIAQVNRPTLVIAHNKTLAAQLYNEFKE 76 (655)
T ss_pred ceeccCCCCChHHHHHHHH----HHHhhhcCCCcEE-EECCCCcHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHH
Confidence 4455567888888877665 4455555542223 68999999999984321 11111 1112222211
Q ss_pred ccCccceEEEEEEEEEE
Q psy17370 210 SWSHSGWTGWVSCVVVI 226 (262)
Q Consensus 210 ~~~~~~~~~~vS~~EIy 226 (262)
-+.+....+.|||+-.|
T Consensus 77 f~p~~~V~~f~sy~d~y 93 (655)
T TIGR00631 77 FFPENAVEYFVSYYDYY 93 (655)
T ss_pred hCCCCeEEEEeeecccC
Confidence 11344578889999888
No 82
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=78.34 E-value=0.99 Score=47.06 Aligned_cols=28 Identities=29% Similarity=0.503 Sum_probs=20.5
Q ss_pred hhHhhhhC--CCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFN--GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~--G~n~~ifaYG~tgSGKTyTm 190 (262)
..+..++. |-+.+||-||.+|+|||.|+
T Consensus 769 sfL~paIkgsgpnnvLYIyG~PGTGKTATV 798 (1164)
T PTZ00112 769 GFLESGIKQSGSNQILYISGMPGTGKTATV 798 (1164)
T ss_pred HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence 33444443 44567889999999999987
No 83
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=78.31 E-value=0.88 Score=43.78 Aligned_cols=52 Identities=19% Similarity=0.286 Sum_probs=32.9
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhh--hCC--CceeEeeeeccCCCCceecC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAA--FNG--YNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~--l~G--~n~~ifaYG~tgSGKTyTm~ 191 (262)
-+..|+||.-.- ..+++..|.. +..+.+.. ..| +| -+|-||..|+||||-+.
T Consensus 104 l~~~~tFdnFv~-g~~N~~a~~~-a~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~ 159 (445)
T PRK12422 104 LDPLMTFANFLV-TPENDLPHRI-LQEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ 159 (445)
T ss_pred CCccccccceee-CCcHHHHHHH-HHHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence 467799998774 3456555543 33443322 223 34 46789999999999873
No 84
>PRK09183 transposase/IS protein; Provisional
Probab=78.18 E-value=1.1 Score=39.77 Aligned_cols=20 Identities=25% Similarity=0.345 Sum_probs=15.3
Q ss_pred CCCceeEeeeeccCCCCceecC
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.|.| ++-+|++|+||||-+.
T Consensus 101 ~~~~--v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 101 RNEN--IVLLGPSGVGKTHLAI 120 (259)
T ss_pred cCCe--EEEEeCCCCCHHHHHH
Confidence 4555 4568999999999763
No 85
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=78.12 E-value=0.87 Score=38.63 Aligned_cols=27 Identities=19% Similarity=0.175 Sum_probs=18.7
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..++...+..++-.|.-|+||||+|
T Consensus 9 a~~~~l~~~~~~~~l~G~aGtGKT~~l 35 (196)
T PF13604_consen 9 AVRAILTSGDRVSVLQGPAGTGKTTLL 35 (196)
T ss_dssp HHHHHHHCTCSEEEEEESTTSTHHHHH
T ss_pred HHHHHHhcCCeEEEEEECCCCCHHHHH
Confidence 445565544434455799999999988
No 86
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=77.72 E-value=0.85 Score=42.05 Aligned_cols=27 Identities=26% Similarity=0.431 Sum_probs=18.4
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.++..++.+. ..|+--|.||||||.+|
T Consensus 135 ~~L~~~v~~~-~nilI~G~tGSGKTTll 161 (323)
T PRK13833 135 SVIRSAIDSR-LNIVISGGTGSGKTTLA 161 (323)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4444555432 23567799999999988
No 87
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=77.08 E-value=0.89 Score=41.35 Aligned_cols=27 Identities=30% Similarity=0.346 Sum_probs=19.4
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.++..++.+. ..|+-.|.||||||.+|
T Consensus 123 ~~L~~~v~~~-~~ilI~G~tGSGKTTll 149 (299)
T TIGR02782 123 DVLREAVLAR-KNILVVGGTGSGKTTLA 149 (299)
T ss_pred HHHHHHHHcC-CeEEEECCCCCCHHHHH
Confidence 4555555543 45667799999999987
No 88
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=76.81 E-value=1.5 Score=42.10 Aligned_cols=91 Identities=16% Similarity=0.187 Sum_probs=44.9
Q ss_pred eEEEEEeCCCCccccCCCcceEEEcCCce-EEEEcCCC-----------CceeeeeceeeCCCCCcchhhcccchhhHhh
Q psy17370 100 MTVAVRIRPLLVKELHMDVSSIEISPDRR-EMKVNDNA-----------KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDA 167 (262)
Q Consensus 100 IkV~vRiRP~~~~E~~~~~~~i~~~~~~~-~i~~~~~~-----------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~ 167 (262)
-..+|++.+..+.+.....+.+.+..... .+...... ....-+|+.|.+-+..-+++.+.+..++...
T Consensus 127 ~~~~~~~~~~~~~~~l~~~~~v~l~~~~~~~~~~~~~~~d~~~~~~~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p 206 (438)
T PTZ00361 127 PEYYVNILSFVDKEQLEPGCSVLLHNKTHSVVGILLDEVDPLVSVMKVDKAPLESYADIGGLEQQIQEIKEAVELPLTHP 206 (438)
T ss_pred CEEEEeccCcCCHhhCCCCCEEEEcCCCCceEecCccccchhhhhcccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCH
Confidence 46789998888777553444444443322 22221111 1111234444444333444444443444332
Q ss_pred -hhC--CC--ceeEeeeeccCCCCceec
Q psy17370 168 -AFN--GY--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 -~l~--G~--n~~ifaYG~tgSGKTyTm 190 (262)
++. |. .-.++-||++|+|||...
T Consensus 207 ~~~~~~gi~~p~gVLL~GPPGTGKT~LA 234 (438)
T PTZ00361 207 ELYDDIGIKPPKGVILYGPPGTGKTLLA 234 (438)
T ss_pred HHHHhcCCCCCcEEEEECCCCCCHHHHH
Confidence 111 11 123667999999999875
No 89
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=76.77 E-value=1.2 Score=41.32 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=13.9
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||+.|+|||+.+
T Consensus 158 gvLL~GppGtGKT~la 173 (364)
T TIGR01242 158 GVLLYGPPGTGKTLLA 173 (364)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788999999999876
No 90
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=76.55 E-value=1.3 Score=37.76 Aligned_cols=45 Identities=20% Similarity=0.260 Sum_probs=27.9
Q ss_pred eeeeeceeeCCCCCcchhhcccchhhHhhh-hCCCceeEeeeeccCCCCceec
Q psy17370 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAA-FNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~-l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..++||.... . .+..+++. +... .......|+-||..|+||||.+
T Consensus 10 ~~~~~~~~~~-~-~~~~~~~~-----l~~~~~~~~~~~lll~G~~G~GKT~la 55 (226)
T TIGR03420 10 DDPTFDNFYA-G-GNAELLAA-----LRQLAAGKGDRFLYLWGESGSGKSHLL 55 (226)
T ss_pred CchhhcCcCc-C-CcHHHHHH-----HHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 3466766552 1 33333333 2222 2455667899999999999977
No 91
>PHA00729 NTP-binding motif containing protein
Probab=76.36 E-value=1.4 Score=38.47 Aligned_cols=29 Identities=28% Similarity=0.368 Sum_probs=22.1
Q ss_pred hhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 162 QPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 162 ~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+.+++.+.+|.-..|+-+|..|+||||-.
T Consensus 6 k~~~~~l~~~~f~nIlItG~pGvGKT~LA 34 (226)
T PHA00729 6 KKIVSAYNNNGFVSAVIFGKQGSGKTTYA 34 (226)
T ss_pred HHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence 44566666655567999999999999855
No 92
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=76.19 E-value=1.1 Score=37.55 Aligned_cols=28 Identities=29% Similarity=0.217 Sum_probs=18.2
Q ss_pred hhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 162 QPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 162 ~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..++...+... ..+.--|.+|||||.+|
T Consensus 15 ~~~l~~~v~~g-~~i~I~G~tGSGKTTll 42 (186)
T cd01130 15 AAYLWLAVEAR-KNILISGGTGSGKTTLL 42 (186)
T ss_pred HHHHHHHHhCC-CEEEEECCCCCCHHHHH
Confidence 34555555432 23455699999999876
No 93
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=76.12 E-value=1.6 Score=39.42 Aligned_cols=28 Identities=29% Similarity=0.215 Sum_probs=21.7
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
++++++.--.-+.|+--|.|||||+.||
T Consensus 117 evlk~la~~kRGLviiVGaTGSGKSTtm 144 (375)
T COG5008 117 EVLKDLALAKRGLVIIVGATGSGKSTTM 144 (375)
T ss_pred HHHHHhhcccCceEEEECCCCCCchhhH
Confidence 4455555566778888899999999987
No 94
>PF13479 AAA_24: AAA domain
Probab=75.77 E-value=1.2 Score=38.27 Aligned_cols=20 Identities=35% Similarity=0.602 Sum_probs=16.2
Q ss_pred ceeEeeeeccCCCCceecCC
Q psy17370 173 NVCLFAYGQTGSGKSYRGDS 192 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~G 192 (262)
+..++-||+.|+|||+....
T Consensus 3 ~~~~lIyG~~G~GKTt~a~~ 22 (213)
T PF13479_consen 3 PIKILIYGPPGSGKTTLAAS 22 (213)
T ss_pred ceEEEEECCCCCCHHHHHHh
Confidence 45678899999999997743
No 95
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=75.47 E-value=0.99 Score=36.79 Aligned_cols=27 Identities=44% Similarity=0.496 Sum_probs=14.7
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+++....|....++-+|..|+|||+.+
T Consensus 15 ~l~~~~~~~~~~~ll~G~~G~GKT~ll 41 (185)
T PF13191_consen 15 LLDAAQSGSPRNLLLTGESGSGKTSLL 41 (185)
T ss_dssp TTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred HHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence 333334566778999999999999866
No 96
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=75.34 E-value=1 Score=42.06 Aligned_cols=37 Identities=24% Similarity=0.478 Sum_probs=27.0
Q ss_pred CCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 150 DTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 150 ~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+..|+.+|+.++..+.. .....+|--|.-|+||||.+
T Consensus 3 n~eQ~~~~~~v~~~~~~----~~~~~~fv~G~~GtGKs~l~ 39 (364)
T PF05970_consen 3 NEEQRRVFDTVIEAIEN----EEGLNFFVTGPAGTGKSFLI 39 (364)
T ss_pred CHHHHHHHHHHHHHHHc----cCCcEEEEEcCCCCChhHHH
Confidence 35688999887654432 33345688899999999986
No 97
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=74.85 E-value=0.86 Score=38.33 Aligned_cols=27 Identities=30% Similarity=0.372 Sum_probs=19.3
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
|.+.+-.|.+..++-||+.|+|||..|
T Consensus 11 l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 11 LKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp HHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 333333466788999999999999977
No 98
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=74.84 E-value=0.19 Score=49.84 Aligned_cols=104 Identities=15% Similarity=0.164 Sum_probs=65.0
Q ss_pred CCeEEEEEeCCCCccccCCCcceEEEcC----CceEEEEc----CCCCceeeeeceeeCCCCCcchhhcccchhhHhhhh
Q psy17370 98 SRMTVAVRIRPLLVKELHMDVSSIEISP----DRREMKVN----DNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAF 169 (262)
Q Consensus 98 ~~IkV~vRiRP~~~~E~~~~~~~i~~~~----~~~~i~~~----~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l 169 (262)
.+++|+|+|+|.+..... ....+.... -...+... ...+...|.||.+|.....+..++.... .+++..+
T Consensus 305 ~~~~~i~~Isp~~~~~~e-t~~tL~~a~rak~I~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~ 382 (568)
T COG5059 305 CNTRVICTISPSSNSFEE-TINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEILVFREQS-QLSQSSL 382 (568)
T ss_pred ccEEEEEEEcCCCCchHH-HHHHHHHHHHHhhcCCcccccCcCcchHHHHHHHhhhhhhhhhhhhHHHHHHH-hhhhhhh
Confidence 499999999999855321 001111100 00011111 1226678999999999999988888755 6667777
Q ss_pred CCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhcccc
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGF 209 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~ 209 (262)
+| +++|++++++++++|.-. ..++..-.+..++.
T Consensus 383 ~~----~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 416 (568)
T COG5059 383 SG----IFAYMQSLKKETETLKSR--IDLIMKSIISGTFE 416 (568)
T ss_pred hh----HHHHHhhhhhhhhcccch--hhhhhhhhhhhhhh
Confidence 77 899999999999999532 23444444343333
No 99
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=74.48 E-value=1.1 Score=38.12 Aligned_cols=15 Identities=33% Similarity=0.388 Sum_probs=13.2
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-.|+||+|||.|+
T Consensus 4 i~lvGptGvGKTTt~ 18 (196)
T PF00448_consen 4 IALVGPTGVGKTTTI 18 (196)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCchHhHH
Confidence 566799999999987
No 100
>KOG0989|consensus
Probab=74.04 E-value=1.3 Score=40.51 Aligned_cols=30 Identities=23% Similarity=0.332 Sum_probs=20.0
Q ss_pred chhhHhhhhCC-CceeEeeeeccCCCCceec
Q psy17370 161 AQPLLDAAFNG-YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 161 ~~plv~~~l~G-~n~~ifaYG~tgSGKTyTm 190 (262)
+...+...+.+ .---.+-||+.|+|||.|.
T Consensus 44 vV~~L~~a~~~~~lp~~LFyGPpGTGKTSta 74 (346)
T KOG0989|consen 44 VVQVLKNALLRRILPHYLFYGPPGTGKTSTA 74 (346)
T ss_pred HHHHHHHHHhhcCCceEEeeCCCCCcHhHHH
Confidence 33444444444 3334678999999999987
No 101
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=74.03 E-value=1.3 Score=40.98 Aligned_cols=27 Identities=22% Similarity=0.225 Sum_probs=17.6
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.++..++.+. ..|+-.|.||||||.+|
T Consensus 151 ~~L~~~v~~~-~nili~G~tgSGKTTll 177 (332)
T PRK13900 151 EFLEHAVISK-KNIIISGGTSTGKTTFT 177 (332)
T ss_pred HHHHHHHHcC-CcEEEECCCCCCHHHHH
Confidence 3444444333 23556799999999988
No 102
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=73.08 E-value=2.1 Score=44.09 Aligned_cols=36 Identities=31% Similarity=0.302 Sum_probs=26.5
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccc
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFS 210 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~ 210 (262)
.+..+++|.|+.|.| +||||||-+- ++| ++..|+..
T Consensus 30 a~~~i~~G~nvLiiA--PTGsGKTeAA--------fLp-il~~l~~~ 65 (814)
T COG1201 30 AIPEIHSGENVLIIA--PTGSGKTEAA--------FLP-VINELLSL 65 (814)
T ss_pred HHHHHhCCCceEEEc--CCCCChHHHH--------HHH-HHHHHHhc
Confidence 456678999999988 9999999754 444 45555444
No 103
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=73.05 E-value=1.8 Score=34.86 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=17.4
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
++..++++. ..++-.|.+|+|||.++.
T Consensus 16 ~~~~~~~~~-~~~~i~~~~GsGKT~~~~ 42 (201)
T smart00487 16 AIEALLSGL-RDVILAAPTGSGKTLAAL 42 (201)
T ss_pred HHHHHHcCC-CcEEEECCCCCchhHHHH
Confidence 344455442 234556899999999774
No 104
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=72.32 E-value=1.2 Score=37.67 Aligned_cols=46 Identities=26% Similarity=0.200 Sum_probs=24.8
Q ss_pred eEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCccceEEEEEEEEEEEEecCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRF 237 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~~~~~~~vS~~EIyl~Dll~~~l~i 237 (262)
-++.+|.+|||||.++. .|+-..+.. ....+ ++|||+|.-...+..
T Consensus 40 h~li~G~tgsGKS~~l~------~ll~~l~~~----~~p~~-------~~l~iiD~k~~~l~~ 85 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLR------TLLLSLALT----YSPDD-------VQLYIIDPKGSDLAP 85 (205)
T ss_dssp SEEEE--TTSSHHHHHH------HHHHHHHTT------TTT-------EEEEEE-TTSSCCGG
T ss_pred eEEEEcCCCCCccHHHH------HHHHHHHHH----hcCCc-------cEEEEEcCCccccch
Confidence 56789999999999884 233333221 11111 468899987544433
No 105
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=71.63 E-value=2.1 Score=36.94 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=13.3
Q ss_pred CceeEeeeeccCCCCceec
Q psy17370 172 YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm 190 (262)
.+-.+++.|+.||||||..
T Consensus 18 ~~~~v~~~G~AGTGKT~LA 36 (205)
T PF02562_consen 18 NNDLVIVNGPAGTGKTFLA 36 (205)
T ss_dssp H-SEEEEE--TTSSTTHHH
T ss_pred hCCeEEEECCCCCcHHHHH
Confidence 4557899999999999854
No 106
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=71.40 E-value=1.7 Score=36.52 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=15.7
Q ss_pred HhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
|..++.... ..+-.|+.|+|||+++.
T Consensus 10 i~~~~~~~~-~~~i~GpPGTGKT~~l~ 35 (236)
T PF13086_consen 10 IQSALSSNG-ITLIQGPPGTGKTTTLA 35 (236)
T ss_dssp HHHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred HHHHHcCCC-CEEEECCCCCChHHHHH
Confidence 344443333 34557999999999873
No 107
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=71.39 E-value=1.8 Score=32.94 Aligned_cols=16 Identities=38% Similarity=0.517 Sum_probs=13.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|.+|||||+..
T Consensus 1 vI~I~G~~gsGKST~a 16 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLA 16 (121)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred CEEEECCCCCCHHHHH
Confidence 3677899999999865
No 108
>PRK06921 hypothetical protein; Provisional
Probab=71.22 E-value=1.8 Score=38.67 Aligned_cols=19 Identities=32% Similarity=0.329 Sum_probs=15.8
Q ss_pred ceeEeeeeccCCCCceecC
Q psy17370 173 NVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~ 191 (262)
...++-||++|+||||-+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~ 135 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLT 135 (266)
T ss_pred CCeEEEECCCCCcHHHHHH
Confidence 4467889999999999774
No 109
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=70.54 E-value=1.8 Score=39.09 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=15.6
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
|....++-||+.|+|||+++
T Consensus 34 ~~~~~lll~Gp~GtGKT~la 53 (337)
T PRK12402 34 PNLPHLLVQGPPGSGKTAAV 53 (337)
T ss_pred CCCceEEEECCCCCCHHHHH
Confidence 44335778999999999876
No 110
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=70.34 E-value=1.3 Score=33.71 Aligned_cols=15 Identities=40% Similarity=0.736 Sum_probs=13.3
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-||..|.|||+.+
T Consensus 1 I~i~G~~G~GKS~l~ 15 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLA 15 (107)
T ss_pred CEEECCCCCCHHHHH
Confidence 467999999999977
No 111
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=70.07 E-value=2 Score=40.42 Aligned_cols=51 Identities=22% Similarity=0.369 Sum_probs=28.3
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHhh-hhC--C--CceeEeeeeccCCCCceec
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDA-AFN--G--YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~-~l~--G--~n~~ifaYG~tgSGKTyTm 190 (262)
.++||.+-+-+..-+++.+.+..|+... .+. | ....|+-||+.|+|||+..
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lA 182 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLA 182 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHH
Confidence 3455555544444444444444444432 222 1 1334788999999999865
No 112
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=69.71 E-value=1.8 Score=38.96 Aligned_cols=21 Identities=24% Similarity=0.312 Sum_probs=15.9
Q ss_pred CCC-ceeEeeeeccCCCCceec
Q psy17370 170 NGY-NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~-n~~ifaYG~tgSGKTyTm 190 (262)
.|. ...++-||+.|+|||+.+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la 60 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVA 60 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHH
Confidence 444 345666999999999876
No 113
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=69.55 E-value=2.2 Score=38.42 Aligned_cols=20 Identities=35% Similarity=0.282 Sum_probs=17.3
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
.-+.+|.-||..|||||+-|
T Consensus 18 ~~~~~IgL~G~WGsGKSs~l 37 (325)
T PF07693_consen 18 DDPFVIGLYGEWGSGKSSFL 37 (325)
T ss_pred CCCeEEEEECCCCCCHHHHH
Confidence 45778889999999999966
No 114
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=69.28 E-value=1.8 Score=32.98 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=12.7
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-||+.|+|||+..
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 466999999999865
No 115
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=69.22 E-value=4.1 Score=38.18 Aligned_cols=118 Identities=14% Similarity=0.147 Sum_probs=71.1
Q ss_pred CCCeEEEEEeCCCCccccCCCcceEEEcCCceEEE--EcCCC----------CceeeeeceeeCCCCCcchhhcccchhh
Q psy17370 97 CSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMK--VNDNA----------KSYTFKLDHCLGQDTDQTSVFTIIAQPL 164 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~--~~~~~----------~~~~f~FD~vf~~~~~q~~vy~~~~~pl 164 (262)
...-+.+|++.+..+.+.....+.+.++.+...|. ++... +.-.-+|+.|=+-+..-+++.+.+-.||
T Consensus 92 ~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL 171 (406)
T COG1222 92 STGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKPDVTYEDIGGLDEQIQEIREVVELPL 171 (406)
T ss_pred CCCCeEEEeccCCcCHHHcCCCCEEEEcCCcceeeeeCCCccCchhheeeeccCCCCChhhccCHHHHHHHHHHHhcccc
Confidence 34567889999988877664555555554433332 22222 2223344445455555677777777788
Q ss_pred Hhh-hhC--CCc--eeEeeeeccCCCCcee--------------cCCCC---CCCchHhhhhhccccccCcc
Q psy17370 165 LDA-AFN--GYN--VCLFAYGQTGSGKSYR--------------GDSTL---NSSVLRPRVLFYPGFSWSHS 214 (262)
Q Consensus 165 v~~-~l~--G~n--~~ifaYG~tgSGKTyT--------------m~G~~---~~~Giipr~~~~lf~~~~~~ 214 (262)
.+. +|+ |.. --|+-||+.|+|||-- +.|+. ..-|==+|.+.+||....++
T Consensus 172 ~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lArek 243 (406)
T COG1222 172 KNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAREK 243 (406)
T ss_pred cCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHhhc
Confidence 754 333 442 2478899999999852 23332 33455578888888877654
No 116
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=69.03 E-value=2.5 Score=35.23 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=17.6
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.++.+++|.| ++..++||+|||.+
T Consensus 29 ~~~~~~~~~~--~li~~~TG~GKT~~ 52 (203)
T cd00268 29 AIPPLLSGRD--VIGQAQTGSGKTAA 52 (203)
T ss_pred HHHHHhcCCc--EEEECCCCCcHHHH
Confidence 3455566877 45567999999986
No 117
>PTZ00424 helicase 45; Provisional
Probab=68.84 E-value=2.2 Score=39.65 Aligned_cols=26 Identities=23% Similarity=0.418 Sum_probs=19.6
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+..+++|.|.. ..++||||||.+.
T Consensus 57 ~ai~~i~~~~d~i--i~apTGsGKT~~~ 82 (401)
T PTZ00424 57 RGIKPILDGYDTI--GQAQSGTGKTATF 82 (401)
T ss_pred HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence 4456678898864 5679999999754
No 118
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=68.66 E-value=1.9 Score=43.73 Aligned_cols=21 Identities=29% Similarity=0.457 Sum_probs=19.4
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+.|.||+-.|.+|||||+++
T Consensus 82 ~~~~Q~IiisGeSGsGKTe~~ 102 (689)
T PF00063_consen 82 TRQNQSIIISGESGSGKTETS 102 (689)
T ss_dssp HTSEEEEEEEESTTSSHHHHH
T ss_pred cccccceeeccccccccccch
Confidence 589999999999999999884
No 119
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=68.61 E-value=2.2 Score=33.35 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=12.8
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+..|..|||||+-.
T Consensus 2 ii~~G~pgsGKSt~a 16 (143)
T PF13671_consen 2 IILCGPPGSGKSTLA 16 (143)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999999854
No 120
>KOG0354|consensus
Probab=68.38 E-value=3.3 Score=42.17 Aligned_cols=24 Identities=38% Similarity=0.591 Sum_probs=20.4
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+++.+| |.|+.|.+ +||+|||+-
T Consensus 69 eivq~AL-gkNtii~l--PTG~GKTfI 92 (746)
T KOG0354|consen 69 ELVQPAL-GKNTIIAL--PTGSGKTFI 92 (746)
T ss_pred HHhHHhh-cCCeEEEe--ecCCCccch
Confidence 6788899 99987765 999999984
No 121
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=67.75 E-value=3 Score=39.90 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=18.4
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.| ++..++||||||.+
T Consensus 34 ai~~~l~g~d--vi~~a~TGsGKT~a 57 (460)
T PRK11776 34 SLPAILAGKD--VIAQAKTGSGKTAA 57 (460)
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 3556778888 55677999999965
No 122
>KOG2373|consensus
Probab=67.57 E-value=4.1 Score=38.15 Aligned_cols=27 Identities=33% Similarity=0.572 Sum_probs=20.0
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
|.++..|.|. .-|||. |+||||||.-|
T Consensus 261 pvLNk~LkGhR~GElTvlT-GpTGsGKTTFl 290 (514)
T KOG2373|consen 261 PVLNKYLKGHRPGELTVLT-GPTGSGKTTFL 290 (514)
T ss_pred hHHHHHhccCCCCceEEEe-cCCCCCceeEe
Confidence 5566777776 456665 99999999765
No 123
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=67.49 E-value=2.5 Score=40.04 Aligned_cols=25 Identities=24% Similarity=0.482 Sum_probs=19.6
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..+++|.| +++.++||+|||.+
T Consensus 30 ~ai~~~~~g~d--~l~~apTGsGKT~~ 54 (434)
T PRK11192 30 EAIPPALDGRD--VLGSAPTGTGKTAA 54 (434)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHH
Confidence 34566778887 67788999999986
No 124
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=67.42 E-value=2.5 Score=39.99 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=18.1
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.|..+ -++||||||.+
T Consensus 38 aip~il~g~dvi~--~ApTGsGKTla 61 (423)
T PRK04837 38 ALPLTLAGRDVAG--QAQTGTGKTMA 61 (423)
T ss_pred HHHHHhCCCcEEE--ECCCCchHHHH
Confidence 3456788988554 55999999975
No 125
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=66.84 E-value=2.1 Score=35.59 Aligned_cols=17 Identities=24% Similarity=0.358 Sum_probs=14.1
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
+.++-+|++|+|||+..
T Consensus 4 ~~~ll~GpsGvGKT~la 20 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELA 20 (171)
T ss_dssp EEEEEESSTTSSHHHHH
T ss_pred EEEEEECCCCCCHHHHH
Confidence 45777899999999865
No 126
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=66.24 E-value=2.2 Score=38.38 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=13.5
Q ss_pred eEeeeeccCCCCceecC
Q psy17370 175 CLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~ 191 (262)
.|.-.|++|+|||+|+.
T Consensus 196 vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLA 212 (282)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 44455999999999984
No 127
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=66.03 E-value=3.2 Score=40.01 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=19.4
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..|..+++|.++. ...+||||||.+.
T Consensus 18 ~ai~~~l~g~dvl--v~apTGsGKTl~y 43 (470)
T TIGR00614 18 EVINAVLLGRDCF--VVMPTGGGKSLCY 43 (470)
T ss_pred HHHHHHHcCCCEE--EEcCCCCcHhHHH
Confidence 4566788899754 4569999999753
No 128
>PRK13342 recombination factor protein RarA; Reviewed
Probab=66.01 E-value=2.6 Score=39.97 Aligned_cols=41 Identities=20% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 149 QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 149 ~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
....|+++... ...+..-+-.+.-..++-||+.|+|||+..
T Consensus 13 d~vGq~~~v~~-~~~L~~~i~~~~~~~ilL~GppGtGKTtLA 53 (413)
T PRK13342 13 EVVGQEHLLGP-GKPLRRMIEAGRLSSMILWGPPGTGKTTLA 53 (413)
T ss_pred HhcCcHHHhCc-chHHHHHHHcCCCceEEEECCCCCCHHHHH
Confidence 34455555443 122333333444446666999999999866
No 129
>PRK04328 hypothetical protein; Provisional
Probab=65.95 E-value=4.9 Score=35.32 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=20.7
Q ss_pred hhHhhhhCC---CceeEeeeeccCCCCce
Q psy17370 163 PLLDAAFNG---YNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 163 plv~~~l~G---~n~~ifaYG~tgSGKTy 188 (262)
+-++.+|.| ....++-+|..|+|||-
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~ 38 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSI 38 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence 456778876 47778889999999975
No 130
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=65.18 E-value=2.1 Score=38.37 Aligned_cols=43 Identities=26% Similarity=0.236 Sum_probs=24.8
Q ss_pred eCCCCCcchhhcccchhhHhhhhC--CCceeEeeeeccCCCCceec
Q psy17370 147 LGQDTDQTSVFTIIAQPLLDAAFN--GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 147 f~~~~~q~~vy~~~~~plv~~~l~--G~n~~ifaYG~tgSGKTyTm 190 (262)
|+....|+++-+... ..+..... +....++-||+.|+|||+..
T Consensus 3 ~~~~iG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la 47 (305)
T TIGR00635 3 LAEFIGQEKVKEQLQ-LFIEAAKMRQEALDHLLLYGPPGLGKTTLA 47 (305)
T ss_pred HHHHcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 344556666665522 33332221 22234667999999999966
No 131
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=65.09 E-value=2.2 Score=37.75 Aligned_cols=20 Identities=25% Similarity=0.119 Sum_probs=14.6
Q ss_pred CceeEeeeeccCCCCceecC
Q psy17370 172 YNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm~ 191 (262)
.++.++.-|.-|||||+||.
T Consensus 12 ~~~~~lV~a~AGSGKT~~l~ 31 (315)
T PF00580_consen 12 TEGPLLVNAGAGSGKTTTLL 31 (315)
T ss_dssp -SSEEEEEE-TTSSHHHHHH
T ss_pred CCCCEEEEeCCCCCchHHHH
Confidence 45566677889999999984
No 132
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=64.78 E-value=3.3 Score=39.70 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=19.0
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..|..+++|.| +++-.+||||||.+
T Consensus 30 ~ai~~il~g~d--vlv~apTGsGKTla 54 (456)
T PRK10590 30 QAIPAVLEGRD--LMASAQTGTGKTAG 54 (456)
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHH
Confidence 33556788988 55667999999976
No 133
>KOG0926|consensus
Probab=64.61 E-value=4.3 Score=41.79 Aligned_cols=18 Identities=39% Similarity=0.569 Sum_probs=14.6
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
|-.++-+|+||||||.-+
T Consensus 271 n~vvIIcGeTGsGKTTQv 288 (1172)
T KOG0926|consen 271 NPVVIICGETGSGKTTQV 288 (1172)
T ss_pred CCeEEEecCCCCCccccc
Confidence 445667799999999876
No 134
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=64.28 E-value=2.4 Score=39.43 Aligned_cols=26 Identities=31% Similarity=0.461 Sum_probs=17.7
Q ss_pred hhHhhhhC-CCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFN-GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~-G~n~~ifaYG~tgSGKTyTm 190 (262)
.++..+.. +.| |+--|.||||||.+|
T Consensus 153 ~~l~~~v~~~~n--ilI~G~tGSGKTTll 179 (344)
T PRK13851 153 AFLHACVVGRLT--MLLCGPTGSGKTTMS 179 (344)
T ss_pred HHHHHHHHcCCe--EEEECCCCccHHHHH
Confidence 34444443 444 566799999999988
No 135
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=63.95 E-value=2.8 Score=39.65 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.7
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...|+.+|+||+|||.|+
T Consensus 174 ~~vi~lvGptGvGKTTT~ 191 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTI 191 (388)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 356788999999999998
No 136
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=63.55 E-value=4.1 Score=34.32 Aligned_cols=25 Identities=32% Similarity=0.424 Sum_probs=18.1
Q ss_pred hhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 166 DAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 166 ~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+.+|.|. ...+.-||..|||||.-.
T Consensus 2 D~~l~GGi~~g~i~~i~G~~GsGKT~l~ 29 (209)
T TIGR02237 2 DELLGGGVERGTITQIYGPPGSGKTNIC 29 (209)
T ss_pred hhhhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 3455544 566788999999998753
No 137
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=63.43 E-value=3.2 Score=39.27 Aligned_cols=52 Identities=19% Similarity=0.259 Sum_probs=35.8
Q ss_pred ceeeeeceeeCCCCCcchhhcccchhhHhhhhC--C--CceeEeeeeccCCCCcee
Q psy17370 138 SYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN--G--YNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 138 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~--G--~n~~ifaYG~tgSGKTyT 189 (262)
...+.|+++.+..---..+.+.++.++.+.++. | .---|.-||+.|+|||+.
T Consensus 109 ~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGcGKTll 164 (413)
T PLN00020 109 QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQGKSFQ 164 (413)
T ss_pred hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCCCHHHH
Confidence 445677877666655666666677677777663 2 223466799999999986
No 138
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=63.36 E-value=3 Score=31.63 Aligned_cols=15 Identities=33% Similarity=0.357 Sum_probs=12.2
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-.|.+|||||...
T Consensus 1 I~i~G~~GsGKtTia 15 (129)
T PF13238_consen 1 IGISGIPGSGKTTIA 15 (129)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred CEEECCCCCCHHHHH
Confidence 456799999999854
No 139
>KOG2543|consensus
Probab=63.09 E-value=2.7 Score=39.71 Aligned_cols=35 Identities=26% Similarity=0.426 Sum_probs=24.2
Q ss_pred EeeeeccCCCCceecCCCCCCCchHhhhhhccccccCccceEEEEEEEEEE
Q psy17370 176 LFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVI 226 (262)
Q Consensus 176 ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~~~~~~~vS~~EIy 226 (262)
|+-||.+||||||++ ..+|... ..-.+|++++|-|
T Consensus 33 ~~iyG~sgTGKT~~~--------------r~~l~~~--n~~~vw~n~~ecf 67 (438)
T KOG2543|consen 33 VHIYGHSGTGKTYLV--------------RQLLRKL--NLENVWLNCVECF 67 (438)
T ss_pred EEEeccCCCchhHHH--------------HHHHhhc--CCcceeeehHHhc
Confidence 588999999999976 2223333 3445777777777
No 140
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=62.66 E-value=2.9 Score=37.79 Aligned_cols=40 Identities=15% Similarity=0.089 Sum_probs=27.3
Q ss_pred eeEeeeeccCCCCceec---CCCC--------------CCCchHhhhhhccccccCc
Q psy17370 174 VCLFAYGQTGSGKSYRG---DSTL--------------NSSVLRPRVLFYPGFSWSH 213 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm---~G~~--------------~~~Giipr~~~~lf~~~~~ 213 (262)
-.|+-||++|+|||++- -+.. ++-|=-.|-+++||.+..+
T Consensus 152 knVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~~ 208 (368)
T COG1223 152 KNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERARK 208 (368)
T ss_pred ceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 35788999999999864 2221 4455556777777776655
No 141
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=62.51 E-value=2.7 Score=32.95 Aligned_cols=15 Identities=27% Similarity=0.530 Sum_probs=12.8
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-+|++|+|||..+
T Consensus 2 vlL~G~~G~GKt~l~ 16 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLA 16 (139)
T ss_dssp EEEEESSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999865
No 142
>PRK13764 ATPase; Provisional
Probab=62.17 E-value=3 Score=41.72 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.3
Q ss_pred eeEeeeeccCCCCceecC
Q psy17370 174 VCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm~ 191 (262)
..|+-.|.||||||+++.
T Consensus 258 ~~ILIsG~TGSGKTTll~ 275 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQ 275 (602)
T ss_pred CEEEEECCCCCCHHHHHH
Confidence 347888999999999883
No 143
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=62.15 E-value=3.8 Score=39.56 Aligned_cols=28 Identities=25% Similarity=0.399 Sum_probs=19.0
Q ss_pred chhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
...++..+..|.|..+ ||+.|+|||+..
T Consensus 184 le~l~~~L~~~~~iil--~GppGtGKT~lA 211 (459)
T PRK11331 184 IETILKRLTIKKNIIL--QGPPGVGKTFVA 211 (459)
T ss_pred HHHHHHHHhcCCCEEE--ECCCCCCHHHHH
Confidence 3344555556666444 999999999855
No 144
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=62.09 E-value=4.1 Score=41.26 Aligned_cols=28 Identities=18% Similarity=0.211 Sum_probs=17.6
Q ss_pred hhHhhhhC-----CCceeEeeeeccCCCCceecC
Q psy17370 163 PLLDAAFN-----GYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 163 plv~~~l~-----G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.+++.+.+ |.+..|+ .-.||||||+||.
T Consensus 249 ~~~~~~~~~~~~~~~~~gli-~~~TGsGKT~t~~ 281 (667)
T TIGR00348 249 KIVESITRKTWGKDERGGLI-WHTQGSGKTLTML 281 (667)
T ss_pred HHHHHHHhcccCCCCceeEE-EEecCCCccHHHH
Confidence 34455554 3344443 3489999999994
No 145
>PRK10536 hypothetical protein; Provisional
Probab=61.97 E-value=4.4 Score=36.24 Aligned_cols=40 Identities=23% Similarity=0.351 Sum_probs=24.9
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
|.|..+-+-+..|..... .+.+ +..++..|..|+||||..
T Consensus 52 ~~~~~i~p~n~~Q~~~l~--------al~~--~~lV~i~G~aGTGKT~La 91 (262)
T PRK10536 52 RDTSPILARNEAQAHYLK--------AIES--KQLIFATGEAGCGKTWIS 91 (262)
T ss_pred cCCccccCCCHHHHHHHH--------HHhc--CCeEEEECCCCCCHHHHH
Confidence 444555555555544332 2233 237899999999999854
No 146
>PLN03025 replication factor C subunit; Provisional
Probab=61.22 E-value=3.5 Score=37.52 Aligned_cols=16 Identities=31% Similarity=0.405 Sum_probs=13.3
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||+.|+|||++.
T Consensus 36 ~lll~Gp~G~GKTtla 51 (319)
T PLN03025 36 NLILSGPPGTGKTTSI 51 (319)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3556999999999876
No 147
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=61.21 E-value=3.8 Score=37.29 Aligned_cols=27 Identities=30% Similarity=0.304 Sum_probs=17.7
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.++...+.+.. .+.--|.||||||..|
T Consensus 135 ~~l~~~v~~~~-~ili~G~tGsGKTTll 161 (308)
T TIGR02788 135 EFLRLAIASRK-NIIISGGTGSGKTTFL 161 (308)
T ss_pred HHHHHHhhCCC-EEEEECCCCCCHHHHH
Confidence 44555554433 3444699999999966
No 148
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=61.08 E-value=3.3 Score=34.88 Aligned_cols=18 Identities=39% Similarity=0.464 Sum_probs=13.5
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
-..+|.-|+.|||||+.+
T Consensus 15 P~~~i~aG~~GsGKSt~~ 32 (199)
T PF06414_consen 15 PTLIIIAGQPGSGKSTLA 32 (199)
T ss_dssp -EEEEEES-TTSTTHHHH
T ss_pred CEEEEEeCCCCCCHHHHH
Confidence 356788899999999866
No 149
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=60.58 E-value=4.3 Score=41.22 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=19.5
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.|.||+.-|.+|||||.+.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T smart00242 89 DKENQSIIISGESGAGKTENT 109 (677)
T ss_pred cCCCceEEEecCCCCcchHHH
Confidence 588999999999999999976
No 150
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.24 E-value=3.5 Score=38.77 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=14.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..+.-.|+||+|||+|+
T Consensus 138 ~ii~lvGptGvGKTTti 154 (374)
T PRK14722 138 GVFALMGPTGVGKTTTT 154 (374)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35566899999999998
No 151
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=59.91 E-value=2.8 Score=44.99 Aligned_cols=26 Identities=31% Similarity=0.356 Sum_probs=17.7
Q ss_pred hhhhCCCceeEeeeeccCCCCceecCC
Q psy17370 166 DAAFNGYNVCLFAYGQTGSGKSYRGDS 192 (262)
Q Consensus 166 ~~~l~G~n~~ifaYG~tgSGKTyTm~G 192 (262)
+.+.+|....++. ..||||||+||.+
T Consensus 427 ~a~~~g~r~~Ll~-maTGSGKT~tai~ 452 (1123)
T PRK11448 427 KAIVEGQREILLA-MATGTGKTRTAIA 452 (1123)
T ss_pred HHHHhccCCeEEE-eCCCCCHHHHHHH
Confidence 3344566544444 7999999999853
No 152
>PHA02653 RNA helicase NPH-II; Provisional
Probab=59.80 E-value=5.6 Score=40.38 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=18.7
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.++..+++|.+ ++..|+||||||.-
T Consensus 171 qil~~i~~gkd--vIv~A~TGSGKTtq 195 (675)
T PHA02653 171 KIFEAWISRKP--VVLTGGTGVGKTSQ 195 (675)
T ss_pred HHHHHHHhCCC--EEEECCCCCCchhH
Confidence 44555677775 47789999999975
No 153
>PRK06547 hypothetical protein; Provisional
Probab=59.42 E-value=5.6 Score=33.05 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=16.6
Q ss_pred hhhhCCCceeEeeeeccCCCCceec
Q psy17370 166 DAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 166 ~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+..+.---|.-+|..|||||+..
T Consensus 8 ~~~~~~~~~~i~i~G~~GsGKTt~a 32 (172)
T PRK06547 8 ARLCGGGMITVLIDGRSGSGKTTLA 32 (172)
T ss_pred HHhhcCCCEEEEEECCCCCCHHHHH
Confidence 3333444445666799999999854
No 154
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=59.04 E-value=4.9 Score=39.89 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=19.9
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..|..+++|.|+.+ -.+||+|||.+.
T Consensus 20 ~~i~~il~g~dvlv--~~PTG~GKTl~y 45 (591)
T TIGR01389 20 EIISHVLDGRDVLV--VMPTGGGKSLCY 45 (591)
T ss_pred HHHHHHHcCCCEEE--EcCCCccHhHHH
Confidence 55677889998544 459999999864
No 155
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=58.98 E-value=7.9 Score=33.62 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=19.1
Q ss_pred hhHhhhhCC-C--ceeEeeeeccCCCCce
Q psy17370 163 PLLDAAFNG-Y--NVCLFAYGQTGSGKSY 188 (262)
Q Consensus 163 plv~~~l~G-~--n~~ifaYG~tgSGKTy 188 (262)
+-++.+|.| . ..+++-+|..|+|||-
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~ 36 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSI 36 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHH
Confidence 445666653 3 5667889999999986
No 156
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=58.96 E-value=6.9 Score=38.27 Aligned_cols=24 Identities=33% Similarity=0.527 Sum_probs=18.0
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.|+ ++-.+||||||..
T Consensus 151 aip~il~g~dv--iv~ApTGSGKTla 174 (518)
T PLN00206 151 AIPAALSGRSL--LVSADTGSGKTAS 174 (518)
T ss_pred HHHHHhcCCCE--EEEecCCCCccHH
Confidence 35667889875 5566999999964
No 157
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=58.10 E-value=3.3 Score=38.10 Aligned_cols=15 Identities=53% Similarity=0.556 Sum_probs=12.5
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
...||+|||||++-+
T Consensus 90 ~~VYGPTG~GKSqLl 104 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLL 104 (369)
T ss_pred EEEECCCCCCHHHHH
Confidence 356999999999865
No 158
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=57.64 E-value=5.6 Score=38.28 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=19.6
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+..+++|.|+.+. .+||||||.+.
T Consensus 116 ~ai~~~~~G~dvi~~--apTGSGKTlay 141 (475)
T PRK01297 116 QVLGYTLAGHDAIGR--AQTGTGKTAAF 141 (475)
T ss_pred HHHHHHhCCCCEEEE--CCCCChHHHHH
Confidence 445677899987654 49999999654
No 159
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=57.37 E-value=5.4 Score=40.51 Aligned_cols=21 Identities=24% Similarity=0.520 Sum_probs=19.4
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.|.||+.-|.+|||||.+.
T Consensus 85 ~~~~QsIiisGESGaGKTe~~ 105 (674)
T cd01384 85 EGKSQSILVSGESGAGKTETT 105 (674)
T ss_pred cCCCceEEEECCCCCCchhHH
Confidence 589999999999999999876
No 160
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=56.97 E-value=4 Score=35.99 Aligned_cols=17 Identities=24% Similarity=0.458 Sum_probs=14.2
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++-||+.|+|||+..
T Consensus 43 ~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVA 59 (261)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 44677999999999876
No 161
>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=56.85 E-value=5.3 Score=35.93 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=24.7
Q ss_pred chhhHhhhhCCCceeEeeeeccCCCCceec------CCCCC
Q psy17370 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRG------DSTLN 195 (262)
Q Consensus 161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm------~G~~~ 195 (262)
+.||+ ..+.--+..+--||++++|||.++ +|++.
T Consensus 182 a~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~~a~Sv~G~p~ 221 (286)
T PF06048_consen 182 AAPLL-SLLGVEGFGFHLYGQSSSGKTTALQLAASVWGNPD 221 (286)
T ss_pred HHHHH-HHhCCCceEEEEEeCCCCCHHHHHHHhhhhCcCch
Confidence 33444 445566778889999999999865 67764
No 162
>PHA02244 ATPase-like protein
Probab=56.76 E-value=6.4 Score=37.11 Aligned_cols=20 Identities=35% Similarity=0.360 Sum_probs=14.8
Q ss_pred hCCCceeEeeeeccCCCCceec
Q psy17370 169 FNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-.|.+..| +|++|+|||+-.
T Consensus 117 ~~~~PVLL--~GppGtGKTtLA 136 (383)
T PHA02244 117 NANIPVFL--KGGAGSGKNHIA 136 (383)
T ss_pred hcCCCEEE--ECCCCCCHHHHH
Confidence 34666544 899999999754
No 163
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=56.59 E-value=5 Score=39.47 Aligned_cols=29 Identities=28% Similarity=0.472 Sum_probs=20.8
Q ss_pred hhhHhhhhCCCc--eeEeeeeccCCCCceec
Q psy17370 162 QPLLDAAFNGYN--VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 162 ~plv~~~l~G~n--~~ifaYG~tgSGKTyTm 190 (262)
+..++..+.|.. ..++-+|+.|+|||.|+
T Consensus 32 ~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv 62 (519)
T PF03215_consen 32 RSWLEEMFSGSSPKRILLLTGPSGCGKTTTV 62 (519)
T ss_pred HHHHHHHhccCCCcceEEEECCCCCCHHHHH
Confidence 344555555442 45778999999999998
No 164
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=56.33 E-value=5.4 Score=39.59 Aligned_cols=25 Identities=36% Similarity=0.433 Sum_probs=18.8
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|..+|+|.|+. +..+||||||.+.
T Consensus 39 ~ip~~l~G~Dvi--~~ApTGSGKTlaf 63 (572)
T PRK04537 39 TLPVALPGGDVA--GQAQTGTGKTLAF 63 (572)
T ss_pred HHHHHhCCCCEE--EEcCCCCcHHHHH
Confidence 345678999854 4679999999753
No 165
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=56.33 E-value=4.7 Score=37.39 Aligned_cols=15 Identities=40% Similarity=0.647 Sum_probs=12.3
Q ss_pred eeEeeeeccCCCCce
Q psy17370 174 VCLFAYGQTGSGKSY 188 (262)
Q Consensus 174 ~~ifaYG~tgSGKTy 188 (262)
+-|+-.|+||||||+
T Consensus 98 SNILLiGPTGsGKTl 112 (408)
T COG1219 98 SNILLIGPTGSGKTL 112 (408)
T ss_pred ccEEEECCCCCcHHH
Confidence 346778999999996
No 166
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=56.27 E-value=7.6 Score=34.13 Aligned_cols=41 Identities=27% Similarity=0.263 Sum_probs=26.7
Q ss_pred eCCCCCcchhhcccchhhHhhhhC-C-CceeEeeeeccCCCCce
Q psy17370 147 LGQDTDQTSVFTIIAQPLLDAAFN-G-YNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 147 f~~~~~q~~vy~~~~~plv~~~l~-G-~n~~ifaYG~tgSGKTy 188 (262)
|++...|+++-+. .+.+++.+.. | .-..++-||+.|.|||.
T Consensus 23 L~efiGQ~~l~~~-l~i~i~aa~~r~~~l~h~lf~GPPG~GKTT 65 (233)
T PF05496_consen 23 LDEFIGQEHLKGN-LKILIRAAKKRGEALDHMLFYGPPGLGKTT 65 (233)
T ss_dssp CCCS-S-HHHHHH-HHHHHHHHHCTTS---EEEEESSTTSSHHH
T ss_pred HHHccCcHHHHhh-hHHHHHHHHhcCCCcceEEEECCCccchhH
Confidence 5677888888876 3456666553 2 23457889999999986
No 167
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=56.07 E-value=7.1 Score=33.62 Aligned_cols=27 Identities=30% Similarity=0.388 Sum_probs=20.3
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyT 189 (262)
+-++.+|.|. ..++.-+|.+|+|||+-
T Consensus 12 ~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l 41 (234)
T PRK06067 12 EELDRKLGGGIPFPSLILIEGDHGTGKSVL 41 (234)
T ss_pred HHHHHhhCCCCcCCcEEEEECCCCCChHHH
Confidence 5567777644 66777889999999763
No 168
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=55.93 E-value=6.1 Score=40.25 Aligned_cols=21 Identities=33% Similarity=0.612 Sum_probs=19.4
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.|.||+.-|.+|||||.|.
T Consensus 91 ~~~~QsIiisGESGAGKTet~ 111 (692)
T cd01385 91 KKVNQCIVISGESGSGKTEST 111 (692)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 588999999999999999876
No 169
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=55.84 E-value=4.6 Score=41.32 Aligned_cols=21 Identities=29% Similarity=0.382 Sum_probs=16.6
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+.-..++-||+.|+|||+..
T Consensus 49 ~~~~~slLL~GPpGtGKTTLA 69 (725)
T PRK13341 49 ADRVGSLILYGPPGVGKTTLA 69 (725)
T ss_pred cCCCceEEEECCCCCCHHHHH
Confidence 344456788999999999876
No 170
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=55.77 E-value=6.4 Score=39.63 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=19.1
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|..+++|.+ ++..++||||||.+.
T Consensus 36 ai~~ll~g~d--vl~~ApTGsGKT~af 60 (629)
T PRK11634 36 CIPHLLNGRD--VLGMAQTGSGKTAAF 60 (629)
T ss_pred HHHHHHcCCC--EEEEcCCCCcHHHHH
Confidence 4566778877 566779999999764
No 171
>PF04466 Terminase_3: Phage terminase large subunit; InterPro: IPR006701 Initiation of packaging of double-stranded viral DNA involves the specific interaction of the prohead with viral DNA in a process mediated by a phage-encoded terminase protein. The terminase enzymes are usually hetero-oligomers composed of a small and a large subunit. This region is found on the large subunit and possesses an endonuclease and ATPase activity that requires Mg2+ and a neutral or slightly basic reaction. This region is also found in bacterial sequences [, ].; GO: 0006323 DNA packaging; PDB: 2WBN_A 2WC9_A.
Probab=55.51 E-value=3.9 Score=38.53 Aligned_cols=18 Identities=33% Similarity=0.301 Sum_probs=0.0
Q ss_pred EeeeeccCCCCceecCCC
Q psy17370 176 LFAYGQTGSGKSYRGDST 193 (262)
Q Consensus 176 ifaYG~tgSGKTyTm~G~ 193 (262)
+.+||..||||||++...
T Consensus 5 ~v~~GGrGS~KS~~~a~~ 22 (387)
T PF04466_consen 5 IVLKGGRGSGKSSFIAQK 22 (387)
T ss_dssp ------------------
T ss_pred EEEECCCCchHHHHHHHH
Confidence 467999999999998654
No 172
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=55.50 E-value=5.6 Score=40.67 Aligned_cols=21 Identities=19% Similarity=0.358 Sum_probs=19.5
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.|.||+.-|.+|||||.+.
T Consensus 88 ~~~~QsIiisGESGaGKTes~ 108 (717)
T cd01382 88 LKMSQSIIVSGESGAGKTENT 108 (717)
T ss_pred cCCCCeEEEecCCCCChhHHH
Confidence 589999999999999999976
No 173
>PRK13767 ATP-dependent helicase; Provisional
Probab=55.23 E-value=5.8 Score=41.46 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=18.5
Q ss_pred HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+..+++|.|+.|.| +||||||...
T Consensus 41 i~~il~g~nvli~A--PTGSGKTlaa 64 (876)
T PRK13767 41 IPLIHEGKNVLISS--PTGSGKTLAA 64 (876)
T ss_pred HHHHHcCCCEEEEC--CCCCcHHHHH
Confidence 44567899877655 9999999863
No 174
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=55.22 E-value=6.3 Score=40.01 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.4
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (679)
T cd00124 83 DRRNQSIIISGESGAGKTENT 103 (679)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 589999999999999999876
No 175
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=55.07 E-value=6.3 Score=40.03 Aligned_cols=21 Identities=29% Similarity=0.612 Sum_probs=19.5
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTe~~ 103 (674)
T cd01378 83 ENENQCVIISGESGAGKTEAA 103 (674)
T ss_pred cCCCceEEEEcCCCCCcchHH
Confidence 589999999999999999976
No 176
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=55.01 E-value=6.9 Score=39.75 Aligned_cols=21 Identities=24% Similarity=0.480 Sum_probs=19.4
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.|.||+.-|.+|||||.+.
T Consensus 89 ~~~~QsIiisGESGaGKTe~~ 109 (677)
T cd01383 89 DEVNQSIIISGESGAGKTETA 109 (677)
T ss_pred cCCCceEEEecCCCCCcchHH
Confidence 589999999999999999876
No 177
>KOG0727|consensus
Probab=54.71 E-value=5 Score=36.10 Aligned_cols=116 Identities=17% Similarity=0.197 Sum_probs=67.9
Q ss_pred CCeEEEEEeCCCCccccCCCcceE----------EEcC--CceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhH
Q psy17370 98 SRMTVAVRIRPLLVKELHMDVSSI----------EISP--DRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLL 165 (262)
Q Consensus 98 ~~IkV~vRiRP~~~~E~~~~~~~i----------~~~~--~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv 165 (262)
..-.-+||+--..++|.......+ .+.+ ....|......+.-.-+|..|=+-+...++|-+.+-.||.
T Consensus 97 tgsny~vrilstidrellkps~svalhrhsnalvdvlppeadssi~ml~~~ekpdvsy~diggld~qkqeireavelplt 176 (408)
T KOG0727|consen 97 TGSNYYVRILSTIDRELLKPSASVALHRHSNALVDVLPPEADSSISMLGPDEKPDVSYADIGGLDVQKQEIREAVELPLT 176 (408)
T ss_pred cCCceEEeehhhhhHHHcCCccchhhhhcccceeeccCCcccccccccCCCCCCCccccccccchhhHHHHHHHHhccch
Confidence 345678999888888865222222 2211 1112222222233344455565677777788888878887
Q ss_pred hhhh-C--CCc--eeEeeeeccCCCCceec--------------CCCC---CCCchHhhhhhccccccCc
Q psy17370 166 DAAF-N--GYN--VCLFAYGQTGSGKSYRG--------------DSTL---NSSVLRPRVLFYPGFSWSH 213 (262)
Q Consensus 166 ~~~l-~--G~n--~~ifaYG~tgSGKTyTm--------------~G~~---~~~Giipr~~~~lf~~~~~ 213 (262)
..=| . |.. --++-||+.|+|||--. .|+. ...|==||.+.++|....+
T Consensus 177 ~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlake 246 (408)
T KOG0727|consen 177 HADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE 246 (408)
T ss_pred HHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHhc
Confidence 6643 1 332 24789999999997422 2332 3456668888888776654
No 178
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=54.65 E-value=6.5 Score=40.07 Aligned_cols=21 Identities=24% Similarity=0.450 Sum_probs=19.3
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+.|.||+.-|.+|||||.+.
T Consensus 88 ~~~~QsIiiSGESGAGKTes~ 108 (693)
T cd01377 88 DRENQSILITGESGAGKTENT 108 (693)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 589999999999999999875
No 179
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=54.46 E-value=6.7 Score=39.86 Aligned_cols=21 Identities=33% Similarity=0.577 Sum_probs=19.5
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.|.||+--|.+|||||.+.
T Consensus 84 ~~~~QsIiisGESGaGKTe~~ 104 (677)
T cd01387 84 AKQNQCVIISGESGSGKTEAT 104 (677)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 589999999999999999976
No 180
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=54.41 E-value=6.6 Score=37.32 Aligned_cols=37 Identities=24% Similarity=0.380 Sum_probs=24.8
Q ss_pred CCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCce
Q psy17370 151 TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 151 ~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTy 188 (262)
..|+.+... .++|=.-+-.|.-.+.+-||+.|+|||.
T Consensus 27 vGQ~HLlg~-~~~lrr~v~~~~l~SmIl~GPPG~GKTT 63 (436)
T COG2256 27 VGQEHLLGE-GKPLRRAVEAGHLHSMILWGPPGTGKTT 63 (436)
T ss_pred cChHhhhCC-CchHHHHHhcCCCceeEEECCCCCCHHH
Confidence 445555544 2244333445777888899999999997
No 181
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=54.30 E-value=5.1 Score=36.15 Aligned_cols=37 Identities=19% Similarity=0.009 Sum_probs=22.5
Q ss_pred CCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 149 QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 149 ~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
+...|.++-+ .+.+.+.+|.++ +.=.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~----~v~~~~~~~~~~--~~eapTGtGKTl~~L 45 (289)
T smart00488 9 PYPIQYEFME----ELKRVLDRGKIG--ILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHH----HHHHHHHcCCcE--EEECCCCcchhHHHH
Confidence 3455555433 333445567654 445699999998764
No 182
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=54.30 E-value=5.1 Score=36.15 Aligned_cols=37 Identities=19% Similarity=0.009 Sum_probs=22.5
Q ss_pred CCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 149 QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 149 ~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
+...|.++-+ .+.+.+.+|.++ +.=.+||+|||.+.+
T Consensus 9 ~r~~Q~~~m~----~v~~~~~~~~~~--~~eapTGtGKTl~~L 45 (289)
T smart00489 9 PYPIQYEFME----ELKRVLDRGKIG--ILESPTGTGKTLSLL 45 (289)
T ss_pred CCHHHHHHHH----HHHHHHHcCCcE--EEECCCCcchhHHHH
Confidence 3455555433 333445567654 445699999998764
No 183
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=54.02 E-value=6.7 Score=34.70 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=16.8
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
++..+..|.+.. -+|.+|+|||...
T Consensus 14 ~l~~l~~g~~vL--L~G~~GtGKT~lA 38 (262)
T TIGR02640 14 ALRYLKSGYPVH--LRGPAGTGKTTLA 38 (262)
T ss_pred HHHHHhcCCeEE--EEcCCCCCHHHHH
Confidence 334444566554 4899999999743
No 184
>KOG0330|consensus
Probab=53.92 E-value=8.1 Score=36.62 Aligned_cols=25 Identities=36% Similarity=0.396 Sum_probs=19.0
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-|-.+|.|..+.+.| +||||||-+-
T Consensus 91 aiP~~L~g~dvIglA--eTGSGKT~af 115 (476)
T KOG0330|consen 91 AIPVALGGRDVIGLA--ETGSGKTGAF 115 (476)
T ss_pred hcchhhCCCcEEEEe--ccCCCchhhh
Confidence 345678999876655 9999999754
No 185
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=53.88 E-value=8.7 Score=32.80 Aligned_cols=28 Identities=32% Similarity=0.452 Sum_probs=21.1
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.|. ...+.-+|..|+|||.-.
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 40 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNIC 40 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 5567788644 456788999999998754
No 186
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=53.62 E-value=9.6 Score=39.32 Aligned_cols=30 Identities=27% Similarity=0.387 Sum_probs=24.0
Q ss_pred chhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
+..+++.+-+|.+-.++++ .||+|||||-+
T Consensus 174 I~rv~Eaf~~g~~raLlvM-ATGTGKTrTAi 203 (875)
T COG4096 174 IRRVIEAFSKGQNRALLVM-ATGTGKTRTAI 203 (875)
T ss_pred HHHHHHHHhcCCceEEEEE-ecCCCcceeHH
Confidence 4556777788999877776 59999999985
No 187
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=53.61 E-value=7.3 Score=39.52 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=19.4
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiisGESGaGKTes~ 103 (671)
T cd01381 83 EKKNQCIIISGESGAGKTEST 103 (671)
T ss_pred cCCCceEEEEcCCCCCeehHH
Confidence 589999999999999999976
No 188
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=52.88 E-value=8 Score=38.66 Aligned_cols=25 Identities=32% Similarity=0.510 Sum_probs=19.0
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..+++|.++.+. ++||+|||.+
T Consensus 32 ~ai~~il~g~dvlv~--apTGsGKTl~ 56 (607)
T PRK11057 32 EIIDAVLSGRDCLVV--MPTGGGKSLC 56 (607)
T ss_pred HHHHHHHcCCCEEEE--cCCCchHHHH
Confidence 445667889887654 6999999974
No 189
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=52.78 E-value=5.7 Score=34.58 Aligned_cols=19 Identities=26% Similarity=0.466 Sum_probs=16.0
Q ss_pred ceeEeeeeccCCCCceecC
Q psy17370 173 NVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~ 191 (262)
...++-||..|+|||+..-
T Consensus 12 ~~~~liyG~~G~GKtt~a~ 30 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIK 30 (220)
T ss_pred CcEEEEECCCCCCHHHHHH
Confidence 3458999999999999774
No 190
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=52.76 E-value=10 Score=36.78 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=20.5
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCce
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSY 188 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTy 188 (262)
+-++.+|.|. +.+++-+|..|+|||.
T Consensus 8 ~gLD~il~GGlp~g~~~Li~G~pGsGKT~ 36 (484)
T TIGR02655 8 EGFDDISHGGLPIGRSTLVSGTSGTGKTL 36 (484)
T ss_pred hhHHHhcCCCCCCCeEEEEEcCCCCCHHH
Confidence 4567777753 6788899999999985
No 191
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=52.72 E-value=9.2 Score=32.66 Aligned_cols=26 Identities=35% Similarity=0.525 Sum_probs=19.8
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCce
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSY 188 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTy 188 (262)
+-++.+|.|. +..++-+|.+|+|||.
T Consensus 6 ~~LD~~l~GGip~gs~~li~G~~GsGKT~ 34 (226)
T PF06745_consen 6 PGLDELLGGGIPKGSVVLISGPPGSGKTT 34 (226)
T ss_dssp TTHHHHTTTSEETTSEEEEEESTTSSHHH
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCcHH
Confidence 4456777543 6778889999999986
No 192
>KOG0953|consensus
Probab=52.71 E-value=6.2 Score=39.04 Aligned_cols=39 Identities=18% Similarity=0.049 Sum_probs=26.1
Q ss_pred eEeeeeccCCCCceecC---CCC---CCCchHhhhhhccccccCc
Q psy17370 175 CLFAYGQTGSGKSYRGD---STL---NSSVLRPRVLFYPGFSWSH 213 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~---G~~---~~~Giipr~~~~lf~~~~~ 213 (262)
-||..|+|+|||||.-. +.. --.|-+-....++|.++..
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na 237 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNA 237 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhh
Confidence 37999999999999653 211 2346566666667666553
No 193
>KOG0335|consensus
Probab=52.55 E-value=6.3 Score=38.19 Aligned_cols=57 Identities=25% Similarity=0.166 Sum_probs=35.7
Q ss_pred hhCCCceeEeeeeccCCCCceecCCCC--------------CCCchHhhh---------hhccccccCccceEEEEEEEE
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRGDSTL--------------NSSVLRPRV---------LFYPGFSWSHSGWTGWVSCVV 224 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm~G~~--------------~~~Giipr~---------~~~lf~~~~~~~~~~~vS~~E 224 (262)
+.+|.. ++|.+|||||||+.-.++- ...|..|++ +.+||...++-.+.-.|-.+.
T Consensus 108 i~~Grd--l~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~ 185 (482)
T KOG0335|consen 108 ISGGRD--LMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVV 185 (482)
T ss_pred eecCCc--eEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeee
Confidence 445555 4889999999999765542 111123333 234566666667777777788
Q ss_pred EE
Q psy17370 225 VI 226 (262)
Q Consensus 225 Iy 226 (262)
+|
T Consensus 186 ~y 187 (482)
T KOG0335|consen 186 VY 187 (482)
T ss_pred ee
Confidence 88
No 194
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=52.43 E-value=6 Score=35.34 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=15.8
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|...-++-||+.|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKt~~~ 55 (319)
T PRK00440 35 EKNMPHLLFAGPPGTGKTTAA 55 (319)
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 344344677999999999866
No 195
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=52.21 E-value=7.5 Score=39.58 Aligned_cols=21 Identities=24% Similarity=0.504 Sum_probs=19.5
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.|.||+.-|.+|||||.+.
T Consensus 83 ~~~~QsIiiSGESGaGKTes~ 103 (691)
T cd01380 83 DEKNQSIIVSGESGAGKTVSA 103 (691)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 699999999999999999875
No 196
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=52.14 E-value=5.3 Score=34.25 Aligned_cols=13 Identities=46% Similarity=0.460 Sum_probs=11.4
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-.|++|+|||.+|
T Consensus 30 ivGpNGaGKSTll 42 (212)
T cd03274 30 IVGPNGSGKSNVI 42 (212)
T ss_pred EECCCCCCHHHHH
Confidence 4599999999987
No 197
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=52.06 E-value=6.6 Score=35.83 Aligned_cols=22 Identities=32% Similarity=0.252 Sum_probs=18.7
Q ss_pred CCCceeEeeeeccCCCCceecC
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
...+..++-||..|||||.+|.
T Consensus 20 ~~~~~r~vL~G~~GsGKS~~L~ 41 (309)
T PF10236_consen 20 SSKNNRYVLTGERGSGKSVLLA 41 (309)
T ss_pred cCCceEEEEECCCCCCHHHHHH
Confidence 4567778999999999999984
No 198
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=51.32 E-value=6.1 Score=36.74 Aligned_cols=26 Identities=31% Similarity=0.280 Sum_probs=18.5
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
++..+.++. +.|+--|-||||||.++
T Consensus 165 ~L~~av~~r-~NILisGGTGSGKTTlL 190 (355)
T COG4962 165 FLRRAVGIR-CNILISGGTGSGKTTLL 190 (355)
T ss_pred HHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence 333444444 66777899999999876
No 199
>PRK05580 primosome assembly protein PriA; Validated
Probab=50.96 E-value=5 Score=40.74 Aligned_cols=17 Identities=35% Similarity=0.294 Sum_probs=14.0
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++.+|.||||||...
T Consensus 163 ~~~Ll~~~TGSGKT~v~ 179 (679)
T PRK05580 163 SPFLLDGVTGSGKTEVY 179 (679)
T ss_pred CcEEEECCCCChHHHHH
Confidence 34788999999999765
No 200
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=50.95 E-value=6.2 Score=35.35 Aligned_cols=27 Identities=26% Similarity=0.322 Sum_probs=18.8
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+++.++.. +--++-.|++|+|||-.+
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li 50 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLI 50 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHH
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHH
Confidence 445555543 335577899999999877
No 201
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=50.93 E-value=8.3 Score=39.57 Aligned_cols=26 Identities=31% Similarity=0.275 Sum_probs=19.9
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+..+++|.|+.+.| +||||||..-
T Consensus 43 ~ai~~il~G~nvvv~a--pTGSGKTla~ 68 (742)
T TIGR03817 43 RAAELAHAGRHVVVAT--GTASGKSLAY 68 (742)
T ss_pred HHHHHHHCCCCEEEEC--CCCCcHHHHH
Confidence 3455678999977665 8999999853
No 202
>PRK00131 aroK shikimate kinase; Reviewed
Probab=50.83 E-value=6.8 Score=31.47 Aligned_cols=16 Identities=38% Similarity=0.513 Sum_probs=13.8
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-+|..|||||+.-
T Consensus 6 ~i~l~G~~GsGKstla 21 (175)
T PRK00131 6 NIVLIGFMGAGKSTIG 21 (175)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 6888999999999863
No 203
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=50.74 E-value=9 Score=35.55 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=20.4
Q ss_pred HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+.+.+|.+..++.-.+||||||...
T Consensus 6 ~~~~~~~~~~~~~i~apTGsGKT~~~ 31 (357)
T TIGR03158 6 FEALQSKDADIIFNTAPTGAGKTLAW 31 (357)
T ss_pred HHHHHcCCCCEEEEECCCCCCHHHHH
Confidence 45567787777788899999999863
No 204
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=50.43 E-value=11 Score=31.95 Aligned_cols=28 Identities=29% Similarity=0.446 Sum_probs=19.9
Q ss_pred hhHhhhhCC-C--ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNG-Y--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G-~--n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.| . ...+.-+|..|+|||.-.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIA 36 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHH
Confidence 446677763 3 344678999999999854
No 205
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=50.27 E-value=7.8 Score=36.15 Aligned_cols=16 Identities=25% Similarity=0.272 Sum_probs=13.3
Q ss_pred EeeeeccCCCCceecC
Q psy17370 176 LFAYGQTGSGKSYRGD 191 (262)
Q Consensus 176 ifaYG~tgSGKTyTm~ 191 (262)
++..|.||||||.++.
T Consensus 2 ~lv~g~tGsGKt~~~v 17 (384)
T cd01126 2 VLVFAPTRSGKGVGFV 17 (384)
T ss_pred eeEecCCCCCCccEEE
Confidence 4678999999999873
No 206
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=50.18 E-value=4.6 Score=36.36 Aligned_cols=12 Identities=42% Similarity=0.578 Sum_probs=11.1
Q ss_pred eeccCCCCceec
Q psy17370 179 YGQTGSGKSYRG 190 (262)
Q Consensus 179 YG~tgSGKTyTm 190 (262)
.|.+|||||.||
T Consensus 33 iGpSGsGKTTtL 44 (309)
T COG1125 33 IGPSGSGKTTTL 44 (309)
T ss_pred ECCCCCcHHHHH
Confidence 499999999998
No 207
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=50.08 E-value=6 Score=37.82 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=13.6
Q ss_pred eEeeeeccCCCCceecC
Q psy17370 175 CLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~ 191 (262)
.++-.|++|+|||+|+.
T Consensus 223 ~i~~vGptGvGKTTt~~ 239 (424)
T PRK05703 223 VVALVGPTGVGKTTTLA 239 (424)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45556999999999873
No 208
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=50.02 E-value=6.5 Score=31.14 Aligned_cols=15 Identities=47% Similarity=0.731 Sum_probs=12.2
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-.|..|||||+.-
T Consensus 2 i~l~G~~GsGKST~a 16 (150)
T cd02021 2 IVVMGVSGSGKSTVG 16 (150)
T ss_pred EEEEcCCCCCHHHHH
Confidence 566799999998853
No 209
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=49.81 E-value=6.6 Score=35.40 Aligned_cols=19 Identities=32% Similarity=0.662 Sum_probs=17.0
Q ss_pred CCceeEeeeeccCCCCcee
Q psy17370 171 GYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyT 189 (262)
|++-+|+.-|++|+|||.-
T Consensus 2 g~~fnImVvG~sG~GKTTF 20 (281)
T PF00735_consen 2 GFNFNIMVVGESGLGKTTF 20 (281)
T ss_dssp EEEEEEEEEECTTSSHHHH
T ss_pred CceEEEEEECCCCCCHHHH
Confidence 7788999999999999983
No 210
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=49.61 E-value=5.9 Score=37.56 Aligned_cols=17 Identities=29% Similarity=0.417 Sum_probs=14.1
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
--++.+|.||||||..|
T Consensus 43 ~h~~i~g~tGsGKt~~i 59 (410)
T cd01127 43 AHTMIIGTTGTGKTTQI 59 (410)
T ss_pred ccEEEEcCCCCCHHHHH
Confidence 34678899999999866
No 211
>PTZ00110 helicase; Provisional
Probab=49.60 E-value=8 Score=38.11 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=18.0
Q ss_pred HhhhhCCCceeEeeeeccCCCCcee
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
+..+++|.+.. +.++||||||.+
T Consensus 161 ip~~l~G~dvI--~~ApTGSGKTla 183 (545)
T PTZ00110 161 WPIALSGRDMI--GIAETGSGKTLA 183 (545)
T ss_pred HHHHhcCCCEE--EEeCCCChHHHH
Confidence 45678898764 567999999976
No 212
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=49.52 E-value=6.8 Score=30.62 Aligned_cols=15 Identities=40% Similarity=0.787 Sum_probs=12.4
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-+|.+|+|||+.+
T Consensus 2 ~~i~G~~G~GKT~l~ 16 (165)
T cd01120 2 ILVFGPTGSGKTTLA 16 (165)
T ss_pred eeEeCCCCCCHHHHH
Confidence 345899999999966
No 213
>PRK04195 replication factor C large subunit; Provisional
Probab=49.46 E-value=7.5 Score=37.63 Aligned_cols=28 Identities=25% Similarity=0.490 Sum_probs=19.6
Q ss_pred hhHhhhhCCC-ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY-NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~-n~~ifaYG~tgSGKTyTm 190 (262)
.++.....|. .-.++-||+.|+|||+..
T Consensus 28 ~~l~~~~~g~~~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 28 EWIESWLKGKPKKALLLYGPPGVGKTSLA 56 (482)
T ss_pred HHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence 3344444554 456788999999999876
No 214
>PF05729 NACHT: NACHT domain
Probab=49.26 E-value=6.9 Score=30.89 Aligned_cols=15 Identities=47% Similarity=0.569 Sum_probs=13.3
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
++-+|..|+|||..|
T Consensus 3 l~I~G~~G~GKStll 17 (166)
T PF05729_consen 3 LWISGEPGSGKSTLL 17 (166)
T ss_pred EEEECCCCCChHHHH
Confidence 567899999999977
No 215
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=49.22 E-value=11 Score=32.13 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=20.6
Q ss_pred hhHhhhhCC---CceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNG---YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G---~n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.| ....+.-+|..|||||.-+
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~ 36 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLC 36 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHH
Confidence 456677775 2556678899999999754
No 216
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=49.21 E-value=11 Score=33.19 Aligned_cols=29 Identities=21% Similarity=0.177 Sum_probs=21.2
Q ss_pred hhhHhhhhC--CCceeEeeeeccCCCCceec
Q psy17370 162 QPLLDAAFN--GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 162 ~plv~~~l~--G~n~~ifaYG~tgSGKTyTm 190 (262)
..+.+.+.+ .....|.-+|..|.|||.-.
T Consensus 6 ~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA 36 (287)
T PF00931_consen 6 EKLKDWLLDNSNEVRVVAIVGMGGIGKTTLA 36 (287)
T ss_dssp HHHHHHHHTTTTSSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhhCCCCCeEEEEEEcCCcCCcceee
Confidence 345555555 56777889999999998744
No 217
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=49.19 E-value=8.3 Score=36.85 Aligned_cols=27 Identities=33% Similarity=0.397 Sum_probs=23.2
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-++.+-+|....-|-.|.-||||||.+
T Consensus 40 ~l~~v~~G~s~~kfi~G~YGsGKTf~l 66 (416)
T PF10923_consen 40 DLDRVADGGSSFKFIRGEYGSGKTFFL 66 (416)
T ss_pred HHHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence 356677899998999999999999966
No 218
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=48.73 E-value=7.6 Score=36.91 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=13.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
.-|.-.|+||-|||.|+
T Consensus 204 ~vi~LVGPTGVGKTTTl 220 (407)
T COG1419 204 RVIALVGPTGVGKTTTL 220 (407)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 33444599999999998
No 219
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=48.69 E-value=8.3 Score=38.87 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=17.8
Q ss_pred HhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
|..++.... .++-.|+.|+|||||+.
T Consensus 166 v~~~l~~~~-~~lI~GpPGTGKT~t~~ 191 (637)
T TIGR00376 166 VSFALSSKD-LFLIHGPPGTGKTRTLV 191 (637)
T ss_pred HHHHhcCCC-eEEEEcCCCCCHHHHHH
Confidence 344444322 34578999999999984
No 220
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=48.38 E-value=7.9 Score=38.09 Aligned_cols=42 Identities=24% Similarity=0.360 Sum_probs=25.7
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-+|+.+++.+.. ++.+...++.....-++-||++|+|||+..
T Consensus 62 ~~f~~iiGqs~~--------i~~l~~al~~~~~~~vLi~Ge~GtGKt~lA 103 (531)
T TIGR02902 62 KSFDEIIGQEEG--------IKALKAALCGPNPQHVIIYGPPGVGKTAAA 103 (531)
T ss_pred CCHHHeeCcHHH--------HHHHHHHHhCCCCceEEEECCCCCCHHHHH
Confidence 346666654422 223333344455566777999999998754
No 221
>KOG0348|consensus
Probab=48.26 E-value=11 Score=37.23 Aligned_cols=23 Identities=35% Similarity=0.502 Sum_probs=17.8
Q ss_pred hHhhhhCCCceeEeeeeccCCCCce
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTy 188 (262)
.|-.+|+|.++.|-| |||||||-
T Consensus 167 ~IP~lL~grD~lV~a--QTGSGKTL 189 (708)
T KOG0348|consen 167 AIPVLLEGRDALVRA--QTGSGKTL 189 (708)
T ss_pred chhhhhcCcceEEEc--CCCCcccH
Confidence 345578899876655 99999985
No 222
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=48.22 E-value=7.6 Score=35.43 Aligned_cols=43 Identities=23% Similarity=0.228 Sum_probs=23.9
Q ss_pred eCCCCCcchhhcccchhhHhhhhC--CCceeEeeeeccCCCCceec
Q psy17370 147 LGQDTDQTSVFTIIAQPLLDAAFN--GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 147 f~~~~~q~~vy~~~~~plv~~~l~--G~n~~ifaYG~tgSGKTyTm 190 (262)
|+....|+++-+... .++..... +....++-||+.|+|||+..
T Consensus 24 ~~~~vG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~GppG~GKT~la 68 (328)
T PRK00080 24 LDEFIGQEKVKENLK-IFIEAAKKRGEALDHVLLYGPPGLGKTTLA 68 (328)
T ss_pred HHHhcCcHHHHHHHH-HHHHHHHhcCCCCCcEEEECCCCccHHHHH
Confidence 344455555444422 23332221 22235677999999999866
No 223
>TIGR03744 traC_PFL_4706 conjugative transfer ATPase, PFL_4706 family. Members of this protein family are predicted ATP-binding proteins apparently associated with DNA conjugal transfer. Members are found both in plasmids and in bacterial chromosomal regions that appear to derive from integrative elements such as conjugative transposons. More distant homologs, outside the scope of this family, include type IV secretion/conjugal transfer proteins such as TraC, VirB4 and TrsE. The granularity of this protein family definition is chosen so as to represent one distinctive clade and act as a marker through which to define and recognize the class of mobile element it serves.
Probab=47.49 E-value=5.3 Score=41.86 Aligned_cols=19 Identities=42% Similarity=0.483 Sum_probs=16.5
Q ss_pred CceeEeeeeccCCCCceec
Q psy17370 172 YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm 190 (262)
.|+-.+-.|.||||||++|
T Consensus 474 ~n~n~~I~G~TGSGKS~l~ 492 (893)
T TIGR03744 474 KNAHLLILGPTGAGKSATL 492 (893)
T ss_pred CcccEEEECCCCCCHHHHH
Confidence 3677788899999999988
No 224
>PRK07261 topology modulation protein; Provisional
Probab=47.47 E-value=7.7 Score=31.97 Aligned_cols=15 Identities=40% Similarity=0.503 Sum_probs=12.1
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-.|.+|||||.-.
T Consensus 3 i~i~G~~GsGKSTla 17 (171)
T PRK07261 3 IAIIGYSGSGKSTLA 17 (171)
T ss_pred EEEEcCCCCCHHHHH
Confidence 566799999998744
No 225
>TIGR02746 TraC-F-type type-IV secretion system protein TraC. The protein family described here is common among the F, P and I-like type IV secretion systems. Gene symbols include TraC (F-type), TrbE/VirB4 (P-type) and TraU (I-type). The protein conyains the Walker A and B motifs and so is a putative nucleotide triphosphatase.
Probab=47.20 E-value=6.6 Score=40.31 Aligned_cols=18 Identities=33% Similarity=0.475 Sum_probs=15.3
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
|.-++..|.||||||++|
T Consensus 430 n~n~~I~G~tGsGKS~~~ 447 (797)
T TIGR02746 430 NYNIAVVGGSGAGKSFFM 447 (797)
T ss_pred ccceEEEcCCCCCHHHHH
Confidence 445677899999999998
No 226
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=47.07 E-value=8.6 Score=35.31 Aligned_cols=17 Identities=24% Similarity=0.389 Sum_probs=13.6
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..+.-.|++|+|||.|+
T Consensus 115 ~vi~lvGpnGsGKTTt~ 131 (318)
T PRK10416 115 FVILVVGVNGVGKTTTI 131 (318)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34555699999999887
No 227
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=46.58 E-value=15 Score=32.29 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=18.1
Q ss_pred hHhhhhCC---CceeEeeeeccCCCCce
Q psy17370 164 LLDAAFNG---YNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 164 lv~~~l~G---~n~~ifaYG~tgSGKTy 188 (262)
-++.+|.| ....++-||..|||||-
T Consensus 11 glD~~l~GG~p~g~~~lI~G~pGsGKT~ 38 (260)
T COG0467 11 GLDEILGGGLPRGSVVLITGPPGTGKTI 38 (260)
T ss_pred chHHHhcCCCcCCcEEEEEcCCCCcHHH
Confidence 35556654 25667889999999986
No 228
>KOG0651|consensus
Probab=46.54 E-value=11 Score=34.83 Aligned_cols=52 Identities=21% Similarity=0.367 Sum_probs=38.8
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhC---CCc--eeEeeeeccCCCCce
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN---GYN--VCLFAYGQTGSGKSY 188 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~---G~n--~~ifaYG~tgSGKTy 188 (262)
....++|+++-+-.-.-.++-+.+..||++..|- |.. --|.-||..|+|||+
T Consensus 125 ~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTl 181 (388)
T KOG0651|consen 125 DPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTL 181 (388)
T ss_pred CccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhH
Confidence 6677888888777666677777788888877542 332 236789999999998
No 229
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=46.39 E-value=5.9 Score=41.74 Aligned_cols=13 Identities=38% Similarity=0.613 Sum_probs=10.9
Q ss_pred ccCCCCceecCCC
Q psy17370 181 QTGSGKSYRGDST 193 (262)
Q Consensus 181 ~tgSGKTyTm~G~ 193 (262)
.||+||||||.+.
T Consensus 67 ~TGtGKT~~~~~~ 79 (986)
T PRK15483 67 ETGTGKTYVYTRL 79 (986)
T ss_pred CCCCCHHHHHHHH
Confidence 7999999988654
No 230
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=46.23 E-value=7.4 Score=37.92 Aligned_cols=17 Identities=29% Similarity=0.347 Sum_probs=13.9
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..+.-.|++|+|||.|+
T Consensus 257 ~Vi~LvGpnGvGKTTTi 273 (484)
T PRK06995 257 GVFALMGPTGVGKTTTT 273 (484)
T ss_pred cEEEEECCCCccHHHHH
Confidence 34556699999999998
No 231
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=46.13 E-value=8.3 Score=31.52 Aligned_cols=17 Identities=41% Similarity=0.360 Sum_probs=13.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
+...-||.+|+|||..|
T Consensus 20 g~~vi~G~Ng~GKStil 36 (202)
T PF13476_consen 20 GLNVIYGPNGSGKSTIL 36 (202)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 34456899999999865
No 232
>PRK01172 ski2-like helicase; Provisional
Probab=45.90 E-value=11 Score=38.00 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=17.3
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.|+ +..++||||||..
T Consensus 30 ai~~l~~~~nv--lv~apTGSGKTl~ 53 (674)
T PRK01172 30 AIEQLRKGENV--IVSVPTAAGKTLI 53 (674)
T ss_pred HHHHHhcCCcE--EEECCCCchHHHH
Confidence 34455778774 5567999999975
No 233
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=45.84 E-value=8.4 Score=31.53 Aligned_cols=14 Identities=43% Similarity=0.790 Sum_probs=12.2
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-+|..|||||+-
T Consensus 2 i~i~G~pGsGKst~ 15 (183)
T TIGR01359 2 VFVLGGPGSGKGTQ 15 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 67889999999874
No 234
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=45.59 E-value=9.9 Score=39.23 Aligned_cols=21 Identities=19% Similarity=0.390 Sum_probs=19.4
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.|.||+.-|.+|+|||.+.
T Consensus 83 ~~~~QsIiiSGESGAGKTe~t 103 (767)
T cd01386 83 TRRDQSIIFLGRSGAGKTTSC 103 (767)
T ss_pred cCCCceEEEecCCCCCcHHHH
Confidence 589999999999999999876
No 235
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=45.32 E-value=9.6 Score=38.56 Aligned_cols=21 Identities=29% Similarity=0.591 Sum_probs=19.1
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+.|-||.--|.+|||||.|+
T Consensus 83 ~~~~QsIiisGESGsGKTet~ 103 (653)
T cd01379 83 YNQDQCIVISGESGSGKTESA 103 (653)
T ss_pred cCCCceEEEecCCCCCchHHH
Confidence 488999999999999999976
No 236
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=45.29 E-value=8.6 Score=30.30 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=12.9
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
+|+-+|..|||||+-.
T Consensus 1 ~i~l~G~~GsGKstla 16 (154)
T cd00464 1 NIVLIGMMGAGKTTVG 16 (154)
T ss_pred CEEEEcCCCCCHHHHH
Confidence 3677899999998744
No 237
>KOG3859|consensus
Probab=45.29 E-value=11 Score=34.34 Aligned_cols=29 Identities=28% Similarity=0.442 Sum_probs=23.7
Q ss_pred hhhHhh-hhCCCceeEeeeeccCCCCceec
Q psy17370 162 QPLLDA-AFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 162 ~plv~~-~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..||.. +-+|+.--|++-|.||-||+.-|
T Consensus 30 dQLV~ksv~~GF~FNilCvGETg~GKsTLm 59 (406)
T KOG3859|consen 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLM 59 (406)
T ss_pred HHHHHHHHhcCceEEEEEeccCCccHHHHH
Confidence 456655 45799999999999999999855
No 238
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=45.04 E-value=8.6 Score=35.66 Aligned_cols=29 Identities=31% Similarity=0.347 Sum_probs=21.0
Q ss_pred chhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
...++..++.+. +.++--|.||||||..|
T Consensus 167 ~~~~L~~~v~~~-~~ili~G~tGsGKTTll 195 (340)
T TIGR03819 167 VARLLRAIVAAR-LAFLISGGTGSGKTTLL 195 (340)
T ss_pred HHHHHHHHHhCC-CeEEEECCCCCCHHHHH
Confidence 345666666644 56777899999999866
No 239
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=44.64 E-value=10 Score=26.27 Aligned_cols=14 Identities=43% Similarity=0.442 Sum_probs=11.1
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
+-.|.+|||||.-|
T Consensus 27 li~G~nGsGKSTll 40 (62)
T PF13555_consen 27 LITGPNGSGKSTLL 40 (62)
T ss_pred EEECCCCCCHHHHH
Confidence 44699999998644
No 240
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=44.47 E-value=12 Score=40.74 Aligned_cols=23 Identities=30% Similarity=0.423 Sum_probs=16.1
Q ss_pred hhhCCCceeEeeeeccCCCCceec
Q psy17370 167 AAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 167 ~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+++.. .++-.|.||||||.-+
T Consensus 84 ~ai~~~~-VviI~GeTGSGKTTql 106 (1294)
T PRK11131 84 EAIRDHQ-VVIVAGETGSGKTTQL 106 (1294)
T ss_pred HHHHhCC-eEEEECCCCCCHHHHH
Confidence 4455554 4566799999999844
No 241
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=44.42 E-value=7.5 Score=31.29 Aligned_cols=13 Identities=46% Similarity=0.537 Sum_probs=10.4
Q ss_pred eeeeccCCCCcee
Q psy17370 177 FAYGQTGSGKSYR 189 (262)
Q Consensus 177 faYG~tgSGKTyT 189 (262)
+-.|.+|||||+.
T Consensus 2 ~l~G~~GsGKSTl 14 (163)
T TIGR01313 2 VLMGVAGSGKSTI 14 (163)
T ss_pred EEECCCCCCHHHH
Confidence 4469999999864
No 242
>PF13173 AAA_14: AAA domain
Probab=44.38 E-value=8.8 Score=29.76 Aligned_cols=16 Identities=25% Similarity=0.297 Sum_probs=13.9
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-+|+.|+|||+.|
T Consensus 4 ~~~l~G~R~vGKTtll 19 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLL 19 (128)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4667899999999987
No 243
>PRK08118 topology modulation protein; Reviewed
Probab=44.05 E-value=9.4 Score=31.40 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=11.4
Q ss_pred EeeeeccCCCCce
Q psy17370 176 LFAYGQTGSGKSY 188 (262)
Q Consensus 176 ifaYG~tgSGKTy 188 (262)
|+-.|..|||||.
T Consensus 4 I~I~G~~GsGKST 16 (167)
T PRK08118 4 IILIGSGGSGKST 16 (167)
T ss_pred EEEECCCCCCHHH
Confidence 6678999999996
No 244
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=43.98 E-value=11 Score=37.78 Aligned_cols=42 Identities=21% Similarity=0.383 Sum_probs=26.8
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-+||.+++ |..... .++..+..++...++-||++|+|||+..
T Consensus 151 ~~~~~iiG----qs~~~~----~l~~~ia~~~~~~vlL~Gp~GtGKTTLA 192 (615)
T TIGR02903 151 RAFSEIVG----QERAIK----ALLAKVASPFPQHIILYGPPGVGKTTAA 192 (615)
T ss_pred CcHHhcee----CcHHHH----HHHHHHhcCCCCeEEEECCCCCCHHHHH
Confidence 35565553 333333 2344455566667888999999999854
No 245
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=43.70 E-value=15 Score=30.44 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=18.1
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.-+...+.| .. ++-.|++|.||+..+
T Consensus 27 ~~l~~~l~~-k~-~vl~G~SGvGKSSLi 52 (161)
T PF03193_consen 27 EELKELLKG-KT-SVLLGQSGVGKSSLI 52 (161)
T ss_dssp HHHHHHHTT-SE-EEEECSTTSSHHHHH
T ss_pred HHHHHHhcC-CE-EEEECCCCCCHHHHH
Confidence 344566777 44 444599999999865
No 246
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=43.69 E-value=20 Score=37.65 Aligned_cols=32 Identities=19% Similarity=0.009 Sum_probs=20.4
Q ss_pred eeeeccCCCCc-------eecCCCCCCCchHhhhhhccccc
Q psy17370 177 FAYGQTGSGKS-------YRGDSTLNSSVLRPRVLFYPGFS 210 (262)
Q Consensus 177 faYG~tgSGKT-------yTm~G~~~~~Giipr~~~~lf~~ 210 (262)
+=.|+|||||| |.+||.....| ....++++..
T Consensus 29 lI~G~nGsGKSSIldAI~~ALyG~~~~~~--~~~~~~~i~~ 67 (908)
T COG0419 29 LIVGPNGAGKSSILDAITFALYGKTPRLG--AFSLDDLIRA 67 (908)
T ss_pred EEECCCCCcHHHHHHHHHHHHcCCCCCcc--chhhhHHHhc
Confidence 34699999995 57788865444 3444444333
No 247
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=43.44 E-value=9.7 Score=31.34 Aligned_cols=15 Identities=33% Similarity=0.649 Sum_probs=12.3
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-+|..|||||+-.
T Consensus 2 I~i~G~pGsGKst~a 16 (194)
T cd01428 2 ILLLGPPGSGKGTQA 16 (194)
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999998643
No 248
>KOG0780|consensus
Probab=43.10 E-value=13 Score=35.28 Aligned_cols=73 Identities=21% Similarity=0.173 Sum_probs=43.4
Q ss_pred cchhhcccchhhHhh---hh---CCCceeEeeeeccCCCCceecC---------CCC----CCCchHhhhhhccccccCc
Q psy17370 153 QTSVFTIIAQPLLDA---AF---NGYNVCLFAYGQTGSGKSYRGD---------STL----NSSVLRPRVLFYPGFSWSH 213 (262)
Q Consensus 153 q~~vy~~~~~plv~~---~l---~G~n~~ifaYG~tgSGKTyTm~---------G~~----~~~Giipr~~~~lf~~~~~ 213 (262)
|.-||++.+ .|++. .| .|.-..|+--|.-|+|||.|+. |.. +..-.-+-++++|-+...+
T Consensus 76 ~~~vf~eL~-kl~dp~~~~~~~~K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k 154 (483)
T KOG0780|consen 76 QKAVFDELV-KLLDPGKSALQPKKGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATK 154 (483)
T ss_pred HHHHHHHHH-HHhCCCCcccccccCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHh
Confidence 455666655 33322 11 3555566667999999999983 222 1222334455555555556
Q ss_pred cceEEEEEEEEEE
Q psy17370 214 SGWTGWVSCVVVI 226 (262)
Q Consensus 214 ~~~~~~vS~~EIy 226 (262)
....++.||-|+-
T Consensus 155 ~~iP~ygsyte~d 167 (483)
T KOG0780|consen 155 ARVPFYGSYTEAD 167 (483)
T ss_pred hCCeeEecccccc
Confidence 6788888888875
No 249
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=43.06 E-value=15 Score=31.38 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=19.3
Q ss_pred hhHhhhhC-CC--ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFN-GY--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~-G~--n~~ifaYG~tgSGKTyTm 190 (262)
+-++.++. |. ..++.-+|.+|+|||...
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~ 37 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFC 37 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHH
Confidence 34556664 33 456777899999998754
No 250
>PRK06696 uridine kinase; Validated
Probab=43.06 E-value=14 Score=31.74 Aligned_cols=28 Identities=21% Similarity=0.141 Sum_probs=18.5
Q ss_pred hhhHhhhh---CCCceeEeeeeccCCCCcee
Q psy17370 162 QPLLDAAF---NGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 162 ~plv~~~l---~G~n~~ifaYG~tgSGKTyT 189 (262)
..|.+.++ .+....|.--|.+|||||+.
T Consensus 8 ~~la~~~~~~~~~~~~iI~I~G~sgsGKSTl 38 (223)
T PRK06696 8 KELAEHILTLNLTRPLRVAIDGITASGKTTF 38 (223)
T ss_pred HHHHHHHHHhCCCCceEEEEECCCCCCHHHH
Confidence 34444444 34455566779999999983
No 251
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=42.98 E-value=11 Score=33.81 Aligned_cols=21 Identities=29% Similarity=0.502 Sum_probs=18.3
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|+...|+..|.+|+|||..+
T Consensus 1 ~g~~f~I~vvG~sg~GKSTli 21 (276)
T cd01850 1 KGFQFNIMVVGESGLGKSTFI 21 (276)
T ss_pred CCcEEEEEEEcCCCCCHHHHH
Confidence 478889999999999998754
No 252
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=42.79 E-value=11 Score=38.32 Aligned_cols=39 Identities=21% Similarity=0.147 Sum_probs=22.7
Q ss_pred CCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 148 GQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 148 ~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.....|+.+...+. ...-.+...-++..|+||||||...
T Consensus 261 ~lt~~Q~~ai~~I~----~d~~~~~~~~~Ll~~~TGSGKT~va 299 (681)
T PRK10917 261 ELTGAQKRVVAEIL----ADLASPKPMNRLLQGDVGSGKTVVA 299 (681)
T ss_pred CCCHHHHHHHHHHH----HhhhccCCceEEEECCCCCcHHHHH
Confidence 34445555444333 2222334445778899999999754
No 253
>PRK06217 hypothetical protein; Validated
Probab=42.60 E-value=9.8 Score=31.50 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=11.6
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|.+|||||.-
T Consensus 4 I~i~G~~GsGKSTl 17 (183)
T PRK06217 4 IHITGASGSGTTTL 17 (183)
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999863
No 254
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=42.43 E-value=17 Score=34.80 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=14.9
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
.-++..|.||||||.++
T Consensus 45 ~h~lvig~tgSGKt~~~ 61 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSF 61 (469)
T ss_pred eEEEEEeCCCCCcccee
Confidence 55788999999999987
No 255
>COG0630 VirB11 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=42.38 E-value=8.4 Score=35.26 Aligned_cols=17 Identities=29% Similarity=0.362 Sum_probs=14.5
Q ss_pred eEeeeeccCCCCceecC
Q psy17370 175 CLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~ 191 (262)
+|+-.|.||||||..|.
T Consensus 145 siii~G~t~sGKTt~ln 161 (312)
T COG0630 145 SIIICGGTASGKTTLLN 161 (312)
T ss_pred cEEEECCCCCCHHHHHH
Confidence 46778999999999883
No 256
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=42.15 E-value=11 Score=28.10 Aligned_cols=15 Identities=27% Similarity=0.452 Sum_probs=12.5
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-.|..|+|||.-+
T Consensus 2 I~V~G~~g~GKTsLi 16 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLI 16 (119)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 567899999999854
No 257
>CHL00181 cbbX CbbX; Provisional
Probab=42.15 E-value=9.9 Score=34.29 Aligned_cols=15 Identities=27% Similarity=0.417 Sum_probs=12.7
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
++-||.+|+|||+..
T Consensus 62 ill~G~pGtGKT~lA 76 (287)
T CHL00181 62 MSFTGSPGTGKTTVA 76 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 566999999999854
No 258
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=42.15 E-value=15 Score=39.63 Aligned_cols=25 Identities=36% Similarity=0.749 Sum_probs=20.2
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..|..+++|.++.+.+ +||+|||.+
T Consensus 467 eaI~aiL~GrDVLVim--PTGSGKSLc 491 (1195)
T PLN03137 467 EIINATMSGYDVFVLM--PTGGGKSLT 491 (1195)
T ss_pred HHHHHHHcCCCEEEEc--CCCccHHHH
Confidence 5677889999966555 999999986
No 259
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=42.04 E-value=19 Score=30.50 Aligned_cols=28 Identities=29% Similarity=0.328 Sum_probs=20.0
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.|. ...+.-+|..|+|||..+
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~ 36 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLC 36 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHH
Confidence 5567777643 445667899999999854
No 260
>PRK08233 hypothetical protein; Provisional
Probab=41.71 E-value=10 Score=30.75 Aligned_cols=15 Identities=20% Similarity=0.251 Sum_probs=11.4
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+--|.+|||||+..
T Consensus 6 I~I~G~~GsGKtTla 20 (182)
T PRK08233 6 ITIAAVSGGGKTTLT 20 (182)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999743
No 261
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=41.67 E-value=9 Score=37.20 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.9
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||+.|+|||+.+
T Consensus 90 giLL~GppGtGKT~la 105 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLA 105 (495)
T ss_pred cEEEECCCCCCHHHHH
Confidence 4778999999999875
No 262
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=41.60 E-value=8.9 Score=36.08 Aligned_cols=15 Identities=40% Similarity=0.567 Sum_probs=11.9
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
++..|.+|||||..|
T Consensus 18 ~li~G~~GsGKT~~i 32 (386)
T PF10412_consen 18 ILIIGATGSGKTQAI 32 (386)
T ss_dssp EEEEE-TTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 567899999999866
No 263
>KOG0340|consensus
Probab=41.54 E-value=14 Score=34.71 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=28.6
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceecCCCC------CCCchHhhhhh
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLF 205 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~ 205 (262)
.+|..+|+|.+| +....||||||...-+.- +-.|+.-..+.
T Consensus 36 ~cIpkILeGrdc--ig~AkTGsGKT~AFaLPil~rLsedP~giFalvlT 82 (442)
T KOG0340|consen 36 ACIPKILEGRDC--IGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLT 82 (442)
T ss_pred hhhHHHhccccc--ccccccCCCcchhhhHHHHHhhccCCCcceEEEec
Confidence 457788999996 456799999999875543 33455555444
No 264
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=41.48 E-value=15 Score=34.04 Aligned_cols=43 Identities=19% Similarity=0.153 Sum_probs=24.4
Q ss_pred eeCCCCCcchhhccc-chhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 146 CLGQDTDQTSVFTII-AQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 146 vf~~~~~q~~vy~~~-~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+-+..+...+|+.- .+.++..+..+. -|+-.|.+|+|||...
T Consensus 38 ~~~p~~d~~y~f~~~~~~~vl~~l~~~~--~ilL~G~pGtGKTtla 81 (327)
T TIGR01650 38 EHVPDIDPAYLFDKATTKAICAGFAYDR--RVMVQGYHGTGKSTHI 81 (327)
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhcCC--cEEEEeCCCChHHHHH
Confidence 334444444555532 233333343333 4777999999999755
No 265
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=41.26 E-value=11 Score=37.16 Aligned_cols=44 Identities=18% Similarity=0.394 Sum_probs=29.6
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCC
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGK 186 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGK 186 (262)
....|+||.+-+....-.++- .++ .-..+.+++|+-+|.||+||
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~-----~~a-kr~A~tdstVLi~GESGTGK 281 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVL-----ELA-KRIAKTDSTVLILGESGTGK 281 (560)
T ss_pred cccccchhhhccCCHHHHHHH-----HHH-HhhcCCCCcEEEecCCCccH
Confidence 345688888886653322211 111 23578999999999999999
No 266
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=41.18 E-value=7 Score=33.75 Aligned_cols=11 Identities=36% Similarity=0.507 Sum_probs=10.2
Q ss_pred eccCCCCceec
Q psy17370 180 GQTGSGKSYRG 190 (262)
Q Consensus 180 G~tgSGKTyTm 190 (262)
|.+|||||.++
T Consensus 6 G~sGSGKTTla 16 (220)
T cd02025 6 GSVAVGKSTTA 16 (220)
T ss_pred CCCCCCHHHHH
Confidence 99999999977
No 267
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=41.11 E-value=12 Score=30.54 Aligned_cols=15 Identities=27% Similarity=0.403 Sum_probs=12.3
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
++-+|.+|+|||.-.
T Consensus 2 ~li~G~~G~GKT~l~ 16 (187)
T cd01124 2 TLLSGGPGTGKTTFA 16 (187)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567899999999844
No 268
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=40.94 E-value=12 Score=29.01 Aligned_cols=14 Identities=43% Similarity=0.496 Sum_probs=11.5
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|++|||||..
T Consensus 2 I~i~G~~GsGKst~ 15 (147)
T cd02020 2 IAIDGPAGSGKSTV 15 (147)
T ss_pred EEEECCCCCCHHHH
Confidence 45679999999873
No 269
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=40.90 E-value=19 Score=29.48 Aligned_cols=28 Identities=21% Similarity=0.255 Sum_probs=21.1
Q ss_pred hhHhhhhC-CCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFN-GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~-G~n~~ifaYG~tgSGKTyTm 190 (262)
.++..++. .....|+-.|..|||||.-+
T Consensus 3 ~~~~~~~~~~~~~~ililGl~~sGKTtll 31 (175)
T PF00025_consen 3 SVLSKLKSKKKEIKILILGLDGSGKTTLL 31 (175)
T ss_dssp HHHHHCTTTTSEEEEEEEESTTSSHHHHH
T ss_pred HHHHHhcccCcEEEEEEECCCccchHHHH
Confidence 34555554 67788999999999999743
No 270
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=40.88 E-value=9.4 Score=34.51 Aligned_cols=12 Identities=33% Similarity=0.484 Sum_probs=10.9
Q ss_pred eeccCCCCceec
Q psy17370 179 YGQTGSGKSYRG 190 (262)
Q Consensus 179 YG~tgSGKTyTm 190 (262)
.|++|+|||.+|
T Consensus 37 lG~NGAGKTTll 48 (293)
T COG1131 37 LGPNGAGKTTLL 48 (293)
T ss_pred ECCCCCCHHHHH
Confidence 499999999987
No 271
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=40.87 E-value=11 Score=33.93 Aligned_cols=16 Identities=25% Similarity=0.374 Sum_probs=13.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
-++-+|.+|+|||+..
T Consensus 60 ~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVA 75 (284)
T ss_pred eEEEEcCCCCCHHHHH
Confidence 4677899999999864
No 272
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=40.80 E-value=15 Score=38.36 Aligned_cols=27 Identities=22% Similarity=0.079 Sum_probs=18.5
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.++..+++|.+- ++.--+||||||..|
T Consensus 22 ~~i~~il~G~~~-v~~~apTGSGKTaa~ 48 (844)
T TIGR02621 22 SLAERFVAGQPP-ESCSTPTGLGKTSII 48 (844)
T ss_pred HHHHHHHcCCCc-ceEecCCCCcccHHH
Confidence 455667899853 333359999999843
No 273
>KOG1803|consensus
Probab=40.58 E-value=11 Score=37.52 Aligned_cols=17 Identities=29% Similarity=0.337 Sum_probs=13.8
Q ss_pred eEeeeeccCCCCceecC
Q psy17370 175 CLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~ 191 (262)
...--|+.|+|||||+.
T Consensus 203 l~~I~GPPGTGKT~Tlv 219 (649)
T KOG1803|consen 203 LLIIHGPPGTGKTRTLV 219 (649)
T ss_pred ceEeeCCCCCCceeeHH
Confidence 34557999999999983
No 274
>TIGR00929 VirB4_CagE type IV secretion/conjugal transfer ATPase, VirB4 family. Type IV secretion systems are found in Gram-negative pathogens. They export proteins, DNA, or complexes in different systems and are related to plasmid conjugation systems. This model represents related ATPases that include VirB4 in Agrobacterium tumefaciens (DNA export) CagE in Helicobacter pylori (protein export) and plasmid TraB (conjugation).
Probab=40.46 E-value=8.6 Score=39.31 Aligned_cols=18 Identities=33% Similarity=0.333 Sum_probs=16.1
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
|.-.+-.|.||||||++|
T Consensus 434 ~~n~~I~G~tGsGKS~~~ 451 (785)
T TIGR00929 434 LGHTLIFGPTGSGKTTLL 451 (785)
T ss_pred CceEEEECCCCCCHHHHH
Confidence 667788999999999988
No 275
>PHA01747 putative ATP-dependent protease
Probab=40.19 E-value=14 Score=34.93 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=24.3
Q ss_pred chhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+.|+++.-..+.|.-++=.|+-|+||||+-
T Consensus 178 LiPlVE~~~~~~NyNliELgPRGTGKS~~f 207 (425)
T PHA01747 178 LLPLFTSPVSKRPVHIIELSNRGTGKTTTF 207 (425)
T ss_pred hhhheeccCCCCCeeEEEecCCCCChhhHH
Confidence 457777556678888899999999999964
No 276
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=39.94 E-value=5.8 Score=37.03 Aligned_cols=44 Identities=20% Similarity=0.274 Sum_probs=26.3
Q ss_pred eeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..|.|+.|-+ |+++=......+++. +. +-|+-+|.+|+|||+.+
T Consensus 12 ~~~pf~~ivG----q~~~k~al~~~~~~p---~~-~~vli~G~~GtGKs~~a 55 (350)
T CHL00081 12 PVFPFTAIVG----QEEMKLALILNVIDP---KI-GGVMIMGDRGTGKSTTI 55 (350)
T ss_pred CCCCHHHHhC----hHHHHHHHHHhccCC---CC-CeEEEEcCCCCCHHHHH
Confidence 3567776654 444333333333322 22 34778999999999987
No 277
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=39.94 E-value=13 Score=35.86 Aligned_cols=18 Identities=28% Similarity=0.422 Sum_probs=15.3
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
-..|+-+|.+|+|||.|.
T Consensus 95 p~vI~lvG~~GsGKTTta 112 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTA 112 (437)
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 456777899999999987
No 278
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=39.90 E-value=11 Score=26.50 Aligned_cols=15 Identities=27% Similarity=0.477 Sum_probs=11.7
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
++-+|..|+|||.+.
T Consensus 2 ~~~~g~~G~Gktt~~ 16 (99)
T cd01983 2 IVVTGKGGVGKTTLA 16 (99)
T ss_pred EEEECCCCCCHHHHH
Confidence 445677899999976
No 279
>PRK04040 adenylate kinase; Provisional
Probab=39.80 E-value=12 Score=31.39 Aligned_cols=16 Identities=25% Similarity=0.291 Sum_probs=13.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-+|..|||||+-.
T Consensus 4 ~i~v~G~pG~GKtt~~ 19 (188)
T PRK04040 4 VVVVTGVPGVGKTTVL 19 (188)
T ss_pred EEEEEeCCCCCHHHHH
Confidence 4678999999999855
No 280
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=39.71 E-value=20 Score=32.38 Aligned_cols=27 Identities=30% Similarity=0.383 Sum_probs=19.6
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyT 189 (262)
+-++.+|.|. ...+.-||..|+|||.-
T Consensus 82 ~~lD~~l~GGi~~g~i~ei~G~~g~GKT~l 111 (310)
T TIGR02236 82 KELDELLGGGIETQAITEVFGEFGSGKTQI 111 (310)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 4456677654 45567899999999874
No 281
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=39.68 E-value=10 Score=35.98 Aligned_cols=17 Identities=35% Similarity=0.321 Sum_probs=13.9
Q ss_pred eEeeeeccCCCCceecC
Q psy17370 175 CLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~ 191 (262)
.+.-.|++|+|||+|+.
T Consensus 208 ii~lvGptGvGKTTt~a 224 (407)
T PRK12726 208 IISLIGQTGVGKTTTLV 224 (407)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45667999999999883
No 282
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=39.65 E-value=13 Score=33.34 Aligned_cols=17 Identities=24% Similarity=0.298 Sum_probs=13.2
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
.+|.-.|.+|+|||.|.
T Consensus 73 ~vi~l~G~~G~GKTTt~ 89 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTI 89 (272)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 34444599999999987
No 283
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=39.34 E-value=11 Score=29.61 Aligned_cols=20 Identities=25% Similarity=0.363 Sum_probs=15.5
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
..+.-|+-+|..||||++..
T Consensus 19 ~~~~pvli~GE~GtGK~~~A 38 (138)
T PF14532_consen 19 KSSSPVLITGEPGTGKSLLA 38 (138)
T ss_dssp CSSS-EEEECCTTSSHHHHH
T ss_pred CCCCcEEEEcCCCCCHHHHH
Confidence 55666788999999999854
No 284
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=39.30 E-value=12 Score=30.04 Aligned_cols=15 Identities=33% Similarity=0.470 Sum_probs=12.5
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.-+|+.|||||+..
T Consensus 3 I~i~G~~GSGKstia 17 (171)
T TIGR02173 3 ITISGPPGSGKTTVA 17 (171)
T ss_pred EEEECCCCCCHHHHH
Confidence 667899999998754
No 285
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=39.17 E-value=11 Score=36.16 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.6
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..|.-.|++|+|||.|+
T Consensus 242 ~vI~LVGptGvGKTTTi 258 (436)
T PRK11889 242 QTIALIGPTGVGKTTTL 258 (436)
T ss_pred cEEEEECCCCCcHHHHH
Confidence 45677899999999988
No 286
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=38.74 E-value=11 Score=30.76 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.3
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-.|.+|||||..+
T Consensus 3 ~~~i~G~sGsGKttl~ 18 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLL 18 (179)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999977
No 287
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.72 E-value=12 Score=38.45 Aligned_cols=17 Identities=35% Similarity=0.368 Sum_probs=14.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..|.-.|++|+|||.|+
T Consensus 186 ~Vi~lVGpnGvGKTTTi 202 (767)
T PRK14723 186 GVLALVGPTGVGKTTTT 202 (767)
T ss_pred eEEEEECCCCCcHHHHH
Confidence 35666799999999988
No 288
>PRK14974 cell division protein FtsY; Provisional
Probab=38.60 E-value=14 Score=34.23 Aligned_cols=18 Identities=28% Similarity=0.379 Sum_probs=15.1
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...|.-.|.+|+|||.|+
T Consensus 140 ~~vi~~~G~~GvGKTTti 157 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTI 157 (336)
T ss_pred CeEEEEEcCCCCCHHHHH
Confidence 456777899999999976
No 289
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=38.41 E-value=18 Score=39.02 Aligned_cols=53 Identities=25% Similarity=0.169 Sum_probs=33.1
Q ss_pred cccchhhHhhhhCCCceeEeeeeccCCCCceec------CCCCCCCchHhhhhhccccccCc
Q psy17370 158 TIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG------DSTLNSSVLRPRVLFYPGFSWSH 213 (262)
Q Consensus 158 ~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm------~G~~~~~Giipr~~~~lf~~~~~ 213 (262)
++.+.+++-.+-.|+++-| |+.||||+=-+ +|.....++=---+.||++.-..
T Consensus 12 KSF~~~~~i~f~~~~t~Iv---GPNGSGKSNI~DAi~fVLG~~s~k~lRa~~~~DlIf~g~~ 70 (1163)
T COG1196 12 KSFADPTEINFSPGFTAIV---GPNGSGKSNIVDAIRFVLGEQSAKNLRASKMSDLIFAGSG 70 (1163)
T ss_pred ccCCCCeeeecCCCCeEEE---CCCCCchHHHHHHHHHHhCcchhhhhhccCCcceeeCCCC
Confidence 3334455556667888765 99999997533 66655555555556666554443
No 290
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=38.11 E-value=13 Score=35.58 Aligned_cols=17 Identities=29% Similarity=0.298 Sum_probs=14.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..+.-.|.+|+|||.|+
T Consensus 192 ~vi~lvGpnG~GKTTtl 208 (420)
T PRK14721 192 GVYALIGPTGVGKTTTT 208 (420)
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35666799999999998
No 291
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=38.10 E-value=19 Score=33.74 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.3
Q ss_pred CCCceeEeeeeccCCCCce---ecCCC
Q psy17370 170 NGYNVCLFAYGQTGSGKSY---RGDST 193 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTy---Tm~G~ 193 (262)
.|..-+|+..|+.|+|||. ||+|.
T Consensus 20 ~Gi~f~im~~G~sG~GKttfiNtL~~~ 46 (373)
T COG5019 20 KGIDFTIMVVGESGLGKTTFINTLFGT 46 (373)
T ss_pred cCCceEEEEecCCCCchhHHHHhhhHh
Confidence 5999999999999999997 66776
No 292
>PHA02624 large T antigen; Provisional
Probab=37.97 E-value=16 Score=36.79 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=20.0
Q ss_pred HhhhhCCCce--eEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNV--CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~--~ifaYG~tgSGKTyTm 190 (262)
++.++.|.-. |++-||+-|||||+-.
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~ 448 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLA 448 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence 5566776544 8899999999998743
No 293
>TIGR02767 TraG-Ti Ti-type conjugative transfer system protien TraG. This protein is found in the Agrobacterium tumefaciens Ti plasmid tra region responsible for conjugative transfer of the entire plasmid among Agrobacterium strains. The protein is distantly related to the F-type conjugation system TraG protein. Both of these systems are examples of type IV secretion systems.
Probab=37.96 E-value=19 Score=36.28 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=18.9
Q ss_pred eeEeeeeccCCCCceecCCCCCCCchHhhhhhc
Q psy17370 174 VCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFY 206 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~ 206 (262)
.=++.+|.||||||.++ +||..+.+
T Consensus 212 ~H~lv~ApTgsGKgvg~--------VIPnLL~~ 236 (623)
T TIGR02767 212 THMIFFAGSGGFKTTSV--------VVPTALKY 236 (623)
T ss_pred ceEEEEeCCCCCcccee--------ehhhhhcC
Confidence 34678899999999965 56666654
No 294
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=37.92 E-value=21 Score=32.39 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=19.5
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.|. ...+.-||..|+|||...
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~ 119 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQIC 119 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHH
Confidence 4455666643 455678899999999743
No 295
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=37.87 E-value=14 Score=30.21 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=12.8
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+..|..|||||...
T Consensus 5 ii~i~G~~GsGKsTl~ 20 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQC 20 (188)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566899999999854
No 296
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=37.81 E-value=16 Score=32.10 Aligned_cols=13 Identities=46% Similarity=0.480 Sum_probs=10.7
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-.|++|||||.-+
T Consensus 33 iiGpSGSGKSTlL 45 (240)
T COG1126 33 IIGPSGSGKSTLL 45 (240)
T ss_pred EECCCCCCHHHHH
Confidence 3699999999855
No 297
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=37.79 E-value=17 Score=32.09 Aligned_cols=28 Identities=32% Similarity=0.438 Sum_probs=20.9
Q ss_pred hhhCCCceeE------eeeeccCCCCc---eecCCCC
Q psy17370 167 AAFNGYNVCL------FAYGQTGSGKS---YRGDSTL 194 (262)
Q Consensus 167 ~~l~G~n~~i------faYG~tgSGKT---yTm~G~~ 194 (262)
.+|.|.|-+| --.|++||||+ |+++|.+
T Consensus 18 eILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p 54 (251)
T COG0396 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHP 54 (251)
T ss_pred hhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 5677777765 34699999996 5778875
No 298
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=37.78 E-value=13 Score=31.78 Aligned_cols=16 Identities=50% Similarity=0.735 Sum_probs=13.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|.|||||+.+.
T Consensus 2 ~IlllG~tGsGKSs~~ 17 (212)
T PF04548_consen 2 RILLLGKTGSGKSSLG 17 (212)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999999754
No 299
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=37.72 E-value=15 Score=30.34 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=16.2
Q ss_pred CCCceeEeeeeccCCCCcee
Q psy17370 170 NGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyT 189 (262)
..++..|+-+|.+|+||+..
T Consensus 19 a~~~~pVlI~GE~GtGK~~l 38 (168)
T PF00158_consen 19 ASSDLPVLITGETGTGKELL 38 (168)
T ss_dssp TTSTS-EEEECSTTSSHHHH
T ss_pred hCCCCCEEEEcCCCCcHHHH
Confidence 46778999999999999863
No 300
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=37.54 E-value=16 Score=28.79 Aligned_cols=24 Identities=17% Similarity=0.162 Sum_probs=16.9
Q ss_pred hhhCCCceeEeeeeccCCCCceecC
Q psy17370 167 AAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 167 ~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
..+.+. ..|+-+|.-|+|||+-+.
T Consensus 10 ~~l~~g-~vi~L~GdLGaGKTtf~r 33 (123)
T PF02367_consen 10 QILKPG-DVILLSGDLGAGKTTFVR 33 (123)
T ss_dssp HHHSS--EEEEEEESTTSSHHHHHH
T ss_pred HhCCCC-CEEEEECCCCCCHHHHHH
Confidence 334433 457889999999999763
No 301
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=37.24 E-value=16 Score=33.42 Aligned_cols=14 Identities=43% Similarity=0.738 Sum_probs=12.2
Q ss_pred eEeeeeccCCCCce
Q psy17370 175 CLFAYGQTGSGKSY 188 (262)
Q Consensus 175 ~ifaYG~tgSGKTy 188 (262)
.|+-.|+||||||-
T Consensus 6 ii~I~GpTasGKS~ 19 (300)
T PRK14729 6 IVFIFGPTAVGKSN 19 (300)
T ss_pred EEEEECCCccCHHH
Confidence 56778999999997
No 302
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=37.10 E-value=16 Score=31.42 Aligned_cols=20 Identities=25% Similarity=0.212 Sum_probs=13.8
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
+..-.|.--|.+|||||..+
T Consensus 31 ~~~~iigi~G~~GsGKTTl~ 50 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLA 50 (229)
T ss_pred CCCEEEEEECCCCCCHHHHH
Confidence 33334455599999999854
No 303
>PTZ00014 myosin-A; Provisional
Probab=36.88 E-value=17 Score=37.85 Aligned_cols=21 Identities=19% Similarity=0.317 Sum_probs=18.8
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+.|.||+.-|.+|+|||.+.
T Consensus 180 ~~~~QsIiiSGESGAGKTe~t 200 (821)
T PTZ00014 180 VKKSQTIIVSGESGAGKTEAT 200 (821)
T ss_pred cCCCceEEEEcCCCCCchHHH
Confidence 588999999999999999654
No 304
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=36.87 E-value=12 Score=31.30 Aligned_cols=14 Identities=36% Similarity=0.373 Sum_probs=11.3
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
.--|.+|||||+.+
T Consensus 3 gi~G~~GsGKSTl~ 16 (198)
T cd02023 3 GIAGGSGSGKTTVA 16 (198)
T ss_pred EEECCCCCCHHHHH
Confidence 34599999999876
No 305
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=36.69 E-value=14 Score=30.79 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=11.7
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.-.|.+|||||+.-
T Consensus 2 IgI~G~sgSGKTTla 16 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLA 16 (194)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999854
No 306
>PRK14531 adenylate kinase; Provisional
Probab=36.63 E-value=14 Score=30.52 Aligned_cols=15 Identities=33% Similarity=0.567 Sum_probs=12.5
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
-|+-.|..|||||.-
T Consensus 4 ~i~i~G~pGsGKsT~ 18 (183)
T PRK14531 4 RLLFLGPPGAGKGTQ 18 (183)
T ss_pred EEEEECCCCCCHHHH
Confidence 367799999999874
No 307
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=36.63 E-value=12 Score=38.76 Aligned_cols=16 Identities=38% Similarity=0.403 Sum_probs=13.6
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
-.+..|+||||||+.|
T Consensus 443 n~~I~G~tGsGKS~l~ 458 (811)
T PRK13873 443 HTLVVGPTGAGKSVLL 458 (811)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4556899999999988
No 308
>PRK13531 regulatory ATPase RavA; Provisional
Probab=36.34 E-value=15 Score=35.84 Aligned_cols=26 Identities=35% Similarity=0.406 Sum_probs=18.2
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-++..++.|.+ |+-+|..|+|||+..
T Consensus 31 lll~aalag~h--VLL~GpPGTGKT~LA 56 (498)
T PRK13531 31 LCLLAALSGES--VFLLGPPGIAKSLIA 56 (498)
T ss_pred HHHHHHccCCC--EEEECCCChhHHHHH
Confidence 34444556665 566999999999854
No 309
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=36.34 E-value=15 Score=35.09 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=13.9
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..|+-+|++|+|||+..
T Consensus 109 ~~iLl~Gp~GtGKT~lA 125 (412)
T PRK05342 109 SNILLIGPTGSGKTLLA 125 (412)
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 55788999999998643
No 310
>PRK09401 reverse gyrase; Reviewed
Probab=36.15 E-value=21 Score=38.72 Aligned_cols=24 Identities=21% Similarity=0.320 Sum_probs=18.5
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCce
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTy 188 (262)
..+..++.|.|..+. .+||||||.
T Consensus 87 ~~i~~il~g~dv~i~--ApTGsGKT~ 110 (1176)
T PRK09401 87 TWAKRLLLGESFAII--APTGVGKTT 110 (1176)
T ss_pred HHHHHHHCCCcEEEE--cCCCCCHHH
Confidence 345667899887665 499999995
No 311
>KOG0745|consensus
Probab=36.11 E-value=16 Score=35.31 Aligned_cols=18 Identities=39% Similarity=0.654 Sum_probs=13.6
Q ss_pred hCCCceeEeeeeccCCCCce
Q psy17370 169 FNGYNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTy 188 (262)
|+..| |+-.|+||||||+
T Consensus 224 LeKSN--vLllGPtGsGKTl 241 (564)
T KOG0745|consen 224 LEKSN--VLLLGPTGSGKTL 241 (564)
T ss_pred eeccc--EEEECCCCCchhH
Confidence 44455 5668999999987
No 312
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=36.10 E-value=14 Score=28.36 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=12.0
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-.|++|||||..+
T Consensus 18 v~I~GpSGsGKSTLl 32 (107)
T cd00820 18 VLITGDSGIGKTELA 32 (107)
T ss_pred EEEEcCCCCCHHHHH
Confidence 345699999999866
No 313
>PRK06762 hypothetical protein; Provisional
Probab=35.62 E-value=16 Score=29.45 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=11.3
Q ss_pred eEeeeeccCCCCce
Q psy17370 175 CLFAYGQTGSGKSY 188 (262)
Q Consensus 175 ~ifaYG~tgSGKTy 188 (262)
.|.-.|..|||||+
T Consensus 4 li~i~G~~GsGKST 17 (166)
T PRK06762 4 LIIIRGNSGSGKTT 17 (166)
T ss_pred EEEEECCCCCCHHH
Confidence 35557999999987
No 314
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=35.42 E-value=52 Score=27.62 Aligned_cols=16 Identities=31% Similarity=0.459 Sum_probs=12.9
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
-|+--|..|+|||.-+
T Consensus 7 ki~ITG~PGvGKtTl~ 22 (179)
T COG1618 7 KIFITGRPGVGKTTLV 22 (179)
T ss_pred EEEEeCCCCccHHHHH
Confidence 4677899999999743
No 315
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=34.91 E-value=21 Score=38.89 Aligned_cols=23 Identities=30% Similarity=0.400 Sum_probs=16.1
Q ss_pred hhhCCCceeEeeeeccCCCCceec
Q psy17370 167 AAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 167 ~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+++.. .++-.|.||||||.-+
T Consensus 77 ~~l~~~~-vvii~g~TGSGKTTql 99 (1283)
T TIGR01967 77 EAIAENQ-VVIIAGETGSGKTTQL 99 (1283)
T ss_pred HHHHhCc-eEEEeCCCCCCcHHHH
Confidence 4445544 5566799999999854
No 316
>PRK10865 protein disaggregation chaperone; Provisional
Probab=34.65 E-value=16 Score=38.17 Aligned_cols=17 Identities=29% Similarity=0.343 Sum_probs=14.4
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
+.++-+|++|+|||++.
T Consensus 599 ~~~Lf~Gp~G~GKT~lA 615 (857)
T PRK10865 599 GSFLFLGPTGVGKTELC 615 (857)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 56777899999999965
No 317
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=34.60 E-value=19 Score=32.06 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=18.8
Q ss_pred hhhhCCCcee-EeeeeccCCCCceecC
Q psy17370 166 DAAFNGYNVC-LFAYGQTGSGKSYRGD 191 (262)
Q Consensus 166 ~~~l~G~n~~-ifaYG~tgSGKTyTm~ 191 (262)
..+++|..+- ++-||..|+|||.++.
T Consensus 44 ~~Fl~G~pannvLL~G~rGtGKSSlVk 70 (249)
T PF05673_consen 44 EQFLQGLPANNVLLWGARGTGKSSLVK 70 (249)
T ss_pred HHHHcCCCCcceEEecCCCCCHHHHHH
Confidence 4567766332 5569999999998873
No 318
>PRK13822 conjugal transfer coupling protein TraG; Provisional
Probab=34.56 E-value=23 Score=35.77 Aligned_cols=17 Identities=12% Similarity=0.073 Sum_probs=14.1
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
.=++.+|.||||||..+
T Consensus 225 ~H~Lv~ApTgsGKt~g~ 241 (641)
T PRK13822 225 THGLVFAGSGGFKTTSV 241 (641)
T ss_pred ceEEEEeCCCCCccceE
Confidence 44678899999999965
No 319
>PRK02362 ski2-like helicase; Provisional
Probab=34.54 E-value=20 Score=36.58 Aligned_cols=21 Identities=29% Similarity=0.287 Sum_probs=15.9
Q ss_pred hhCCCceeEeeeeccCCCCceec
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+++|.|+.+- .+||||||..-
T Consensus 36 ~~~g~nvlv~--APTGSGKTlia 56 (737)
T PRK02362 36 LLDGKNLLAA--IPTASGKTLIA 56 (737)
T ss_pred HhCCCcEEEE--CCCcchHHHHH
Confidence 5678876554 59999999863
No 320
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=34.52 E-value=18 Score=31.73 Aligned_cols=16 Identities=38% Similarity=0.395 Sum_probs=13.0
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.+.-+|++|||||.-+
T Consensus 32 ~~~i~G~nGsGKSTL~ 47 (235)
T COG1122 32 RVLLIGPNGSGKSTLL 47 (235)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4567899999999855
No 321
>PRK14532 adenylate kinase; Provisional
Probab=34.39 E-value=17 Score=30.01 Aligned_cols=14 Identities=29% Similarity=0.639 Sum_probs=12.0
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|..|||||.-
T Consensus 3 i~~~G~pGsGKsT~ 16 (188)
T PRK14532 3 LILFGPPAAGKGTQ 16 (188)
T ss_pred EEEECCCCCCHHHH
Confidence 67799999999863
No 322
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=34.37 E-value=18 Score=30.54 Aligned_cols=15 Identities=40% Similarity=0.392 Sum_probs=11.7
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
..+-+|++|||||--
T Consensus 26 ~~~i~G~NGsGKS~i 40 (220)
T PF02463_consen 26 LNVIVGPNGSGKSNI 40 (220)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred CEEEEcCCCCCHHHH
Confidence 345689999999853
No 323
>KOG0987|consensus
Probab=33.99 E-value=25 Score=34.68 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=22.8
Q ss_pred CCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 150 DTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 150 ~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
...|..||+. +. ..+.+..-...| ||.-|+||||-.
T Consensus 119 ~~eqk~v~d~-~~---~~v~~~~g~~ff-~g~~gtgKt~l~ 154 (540)
T KOG0987|consen 119 TPEQKRVYDA-IL---EAVENNLGGVFF-YGFGGTGKTYLL 154 (540)
T ss_pred CHHHHHHHHH-HH---HHHhccccceee-eccCCccceeeH
Confidence 3457778872 22 233343444556 999999999944
No 324
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=33.97 E-value=14 Score=28.12 Aligned_cols=15 Identities=27% Similarity=0.257 Sum_probs=12.6
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.-+|.+|+|||..|
T Consensus 4 i~~~G~~~~GKstl~ 18 (161)
T TIGR00231 4 IVIVGDPNVGKSTLL 18 (161)
T ss_pred EEEECCCCCCHHHHH
Confidence 566899999999866
No 325
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=33.89 E-value=19 Score=32.93 Aligned_cols=14 Identities=36% Similarity=0.385 Sum_probs=11.5
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
++.-++||||||..
T Consensus 2 vvi~apTGsGKT~~ 15 (358)
T TIGR01587 2 LVIEAPTGYGKTEA 15 (358)
T ss_pred EEEEeCCCCCHHHH
Confidence 45678999999975
No 326
>KOG0635|consensus
Probab=33.86 E-value=40 Score=28.10 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=23.5
Q ss_pred hhhhCCCceeEeeeeccCCCC-----------------ceecCCCC
Q psy17370 166 DAAFNGYNVCLFAYGQTGSGK-----------------SYRGDSTL 194 (262)
Q Consensus 166 ~~~l~G~n~~ifaYG~tgSGK-----------------TyTm~G~~ 194 (262)
+.+++-.-|+|+--|.+|||| ||.+-|+.
T Consensus 24 q~l~~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDN 69 (207)
T KOG0635|consen 24 QKLLKQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDN 69 (207)
T ss_pred HHHhcCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCcc
Confidence 346666678899999999999 68888876
No 327
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=33.83 E-value=14 Score=32.26 Aligned_cols=14 Identities=29% Similarity=0.325 Sum_probs=12.5
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
.-+|+.|+|||.|+
T Consensus 36 ~~~GpagtGKteti 49 (231)
T PF12774_consen 36 ALSGPAGTGKTETI 49 (231)
T ss_dssp EEESSTTSSHHHHH
T ss_pred CCcCCCCCCchhHH
Confidence 35999999999997
No 328
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=33.76 E-value=24 Score=31.15 Aligned_cols=16 Identities=25% Similarity=0.310 Sum_probs=13.4
Q ss_pred ceeEeeeeccCCCCce
Q psy17370 173 NVCLFAYGQTGSGKSY 188 (262)
Q Consensus 173 n~~ifaYG~tgSGKTy 188 (262)
..+++-+|.+|+|||.
T Consensus 36 gs~~lI~G~pGtGKT~ 51 (259)
T TIGR03878 36 YSVINITGVSDTGKSL 51 (259)
T ss_pred CcEEEEEcCCCCCHHH
Confidence 4567789999999986
No 329
>PRK03839 putative kinase; Provisional
Probab=33.70 E-value=16 Score=29.88 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=11.5
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|..|||||+-
T Consensus 3 I~l~G~pGsGKsT~ 16 (180)
T PRK03839 3 IAITGTPGVGKTTV 16 (180)
T ss_pred EEEECCCCCCHHHH
Confidence 56679999999863
No 330
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=33.66 E-value=21 Score=35.90 Aligned_cols=40 Identities=23% Similarity=0.205 Sum_probs=22.5
Q ss_pred eCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 147 LGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 147 f~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
|.....|+.+...+... .-.......+..|+||||||...
T Consensus 234 f~lt~~Q~~ai~~I~~~----~~~~~~~~~Ll~g~TGSGKT~va 273 (630)
T TIGR00643 234 FKLTRAQKRVVKEILQD----LKSDVPMNRLLQGDVGSGKTLVA 273 (630)
T ss_pred CCCCHHHHHHHHHHHHH----hccCCCccEEEECCCCCcHHHHH
Confidence 34444555554443322 22222234677899999999854
No 331
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.64 E-value=23 Score=29.65 Aligned_cols=15 Identities=47% Similarity=0.488 Sum_probs=11.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+| |..|||||.--
T Consensus 5 ~Iva-G~NGsGKstv~ 19 (187)
T COG4185 5 DIVA-GPNGSGKSTVY 19 (187)
T ss_pred EEEe-cCCCCCceeee
Confidence 4566 99999998643
No 332
>PRK13721 conjugal transfer ATP-binding protein TraC; Provisional
Probab=33.61 E-value=15 Score=38.33 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=14.9
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
|.-.+-.|.+|||||++|
T Consensus 449 N~N~~I~G~sGsGKS~l~ 466 (844)
T PRK13721 449 NYNMAVCGTSGAGKTGLI 466 (844)
T ss_pred cccEEEEcCCCCCHHHHH
Confidence 445677899999999988
No 333
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=33.59 E-value=20 Score=29.22 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=12.5
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|.+|||||.-+
T Consensus 3 ii~l~G~~GsGKsTl~ 18 (180)
T TIGR03263 3 LIVISGPSGVGKSTLV 18 (180)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999843
No 334
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=33.58 E-value=33 Score=31.73 Aligned_cols=30 Identities=30% Similarity=0.350 Sum_probs=22.1
Q ss_pred chhhHhhhhC-CC---ceeEeeeeccCCCCceec
Q psy17370 161 AQPLLDAAFN-GY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 161 ~~plv~~~l~-G~---n~~ifaYG~tgSGKTyTm 190 (262)
..+-++.+|. |. ...+.-||+.|||||.-.
T Consensus 39 Gi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLa 72 (325)
T cd00983 39 GSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLA 72 (325)
T ss_pred CCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 4477788887 43 445778999999999643
No 335
>PRK13853 type IV secretion system protein VirB4; Provisional
Probab=33.55 E-value=14 Score=38.09 Aligned_cols=18 Identities=22% Similarity=0.191 Sum_probs=14.8
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
.+-.+.+|+||||||..|
T Consensus 426 ~g~~~I~G~tGsGKS~l~ 443 (789)
T PRK13853 426 VGMTAIFGPIGRGKTTLM 443 (789)
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 345678899999999987
No 336
>KOG1547|consensus
Probab=33.53 E-value=28 Score=31.18 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=22.5
Q ss_pred ccchhhHhhhh-CCCceeEeeeeccCCCCce
Q psy17370 159 IIAQPLLDAAF-NGYNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 159 ~~~~plv~~~l-~G~n~~ifaYG~tgSGKTy 188 (262)
.+..++=...+ .|+.--|+.-||+|.||+.
T Consensus 31 tI~~Qm~~k~mk~GF~FNIMVVgqSglgkst 61 (336)
T KOG1547|consen 31 TIIEQMRKKTMKTGFDFNIMVVGQSGLGKST 61 (336)
T ss_pred HHHHHHHHHHHhccCceEEEEEecCCCCchh
Confidence 33444444444 6999999999999999986
No 337
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=33.39 E-value=16 Score=35.13 Aligned_cols=17 Identities=41% Similarity=0.513 Sum_probs=14.0
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++..|.+|+|||.|+
T Consensus 224 ~vi~lvGptGvGKTTta 240 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSI 240 (432)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34666799999999987
No 338
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=33.36 E-value=17 Score=29.20 Aligned_cols=13 Identities=46% Similarity=0.736 Sum_probs=10.9
Q ss_pred EeeeeccCCCCce
Q psy17370 176 LFAYGQTGSGKSY 188 (262)
Q Consensus 176 ifaYG~tgSGKTy 188 (262)
|+-.|..|||||.
T Consensus 2 i~i~G~~GsGKST 14 (149)
T cd02027 2 IWLTGLSGSGKST 14 (149)
T ss_pred EEEEcCCCCCHHH
Confidence 4567999999987
No 339
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=33.36 E-value=21 Score=37.12 Aligned_cols=26 Identities=31% Similarity=0.247 Sum_probs=18.0
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+++.+.++.+ ++..|+||||||..+
T Consensus 12 ~i~~~l~~~~~--vvv~A~TGSGKTt~~ 37 (812)
T PRK11664 12 ELLTALKTAPQ--VLLKAPTGAGKSTWL 37 (812)
T ss_pred HHHHHHHhCCC--EEEEcCCCCCHHHHH
Confidence 45555544443 566899999999865
No 340
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=33.36 E-value=17 Score=35.76 Aligned_cols=16 Identities=31% Similarity=0.646 Sum_probs=13.2
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-||+.|+|||+..
T Consensus 218 GILLyGPPGTGKT~LA 233 (512)
T TIGR03689 218 GVLLYGPPGCGKTLIA 233 (512)
T ss_pred ceEEECCCCCcHHHHH
Confidence 3777999999999754
No 341
>KOG1532|consensus
Probab=33.34 E-value=20 Score=32.67 Aligned_cols=19 Identities=32% Similarity=0.371 Sum_probs=16.3
Q ss_pred CceeEeeeeccCCCCceec
Q psy17370 172 YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm 190 (262)
.-+||+..|.-|||||.-|
T Consensus 18 ~p~~ilVvGMAGSGKTTF~ 36 (366)
T KOG1532|consen 18 RPVIILVVGMAGSGKTTFM 36 (366)
T ss_pred CCcEEEEEecCCCCchhHH
Confidence 3579999999999999755
No 342
>CHL00195 ycf46 Ycf46; Provisional
Probab=33.28 E-value=15 Score=35.84 Aligned_cols=17 Identities=35% Similarity=0.487 Sum_probs=14.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
-.|+-||+.|+|||+..
T Consensus 260 kGILL~GPpGTGKTllA 276 (489)
T CHL00195 260 RGLLLVGIQGTGKSLTA 276 (489)
T ss_pred ceEEEECCCCCcHHHHH
Confidence 45889999999999755
No 343
>KOG0729|consensus
Probab=33.03 E-value=21 Score=32.47 Aligned_cols=40 Identities=15% Similarity=0.039 Sum_probs=25.2
Q ss_pred eEeeeeccCCCCceec--------------CCCC---CCCchHhhhhhccccccCcc
Q psy17370 175 CLFAYGQTGSGKSYRG--------------DSTL---NSSVLRPRVLFYPGFSWSHS 214 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm--------------~G~~---~~~Giipr~~~~lf~~~~~~ 214 (262)
-|+.||+.|+|||..- .|+. ..-|==.|.+.+||+....+
T Consensus 213 gvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~martk 269 (435)
T KOG0729|consen 213 GVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMARTK 269 (435)
T ss_pred ceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhccc
Confidence 4789999999998643 2332 22333456667777766543
No 344
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=32.77 E-value=24 Score=32.70 Aligned_cols=20 Identities=20% Similarity=0.223 Sum_probs=16.1
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
+.-..|+-.|.+|+|||.|+
T Consensus 137 ~~p~Vil~vGVNG~GKTTTI 156 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTI 156 (340)
T ss_pred CCcEEEEEEecCCCchHhHH
Confidence 33456777799999999998
No 345
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=32.60 E-value=14 Score=37.42 Aligned_cols=21 Identities=24% Similarity=0.438 Sum_probs=16.6
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
...+..|+-+|.+|+||++.-
T Consensus 396 a~~~~pVLI~GE~GTGK~~lA 416 (686)
T PRK15429 396 AQSDSTVLILGETGTGKELIA 416 (686)
T ss_pred hCCCCCEEEECCCCcCHHHHH
Confidence 355667888999999999743
No 346
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=32.50 E-value=21 Score=30.25 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=13.3
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
+++-+|++|+|||..+
T Consensus 24 ~~~i~G~NGsGKTTLl 39 (204)
T cd03240 24 LTLIVGQNGAGKTTII 39 (204)
T ss_pred eEEEECCCCCCHHHHH
Confidence 6667899999999765
No 347
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.45 E-value=14 Score=37.27 Aligned_cols=16 Identities=38% Similarity=0.463 Sum_probs=14.0
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||++|+|||.++
T Consensus 112 illL~GP~GsGKTTl~ 127 (637)
T TIGR00602 112 ILLITGPSGCGKSTTI 127 (637)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4677999999999977
No 348
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=32.35 E-value=27 Score=33.93 Aligned_cols=27 Identities=22% Similarity=0.271 Sum_probs=20.5
Q ss_pred hhHhhhhCC---CceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNG---YNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G---~n~~ifaYG~tgSGKTyT 189 (262)
+-++.+|.| ....++-+|.+|+|||.-
T Consensus 18 ~~LD~~l~GG~p~Gs~~li~G~pGsGKT~l 47 (509)
T PRK09302 18 EGFDDITHGGLPKGRPTLVSGTAGTGKTLF 47 (509)
T ss_pred hhHHHhhcCCCCCCcEEEEEeCCCCCHHHH
Confidence 556777764 366788899999999863
No 349
>PTZ00301 uridine kinase; Provisional
Probab=32.32 E-value=14 Score=31.85 Aligned_cols=11 Identities=55% Similarity=0.688 Sum_probs=9.5
Q ss_pred eeccCCCCcee
Q psy17370 179 YGQTGSGKSYR 189 (262)
Q Consensus 179 YG~tgSGKTyT 189 (262)
-|.+|||||+.
T Consensus 9 aG~SgSGKTTl 19 (210)
T PTZ00301 9 SGASGSGKSSL 19 (210)
T ss_pred ECCCcCCHHHH
Confidence 49999999984
No 350
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=32.22 E-value=16 Score=34.18 Aligned_cols=20 Identities=35% Similarity=0.378 Sum_probs=14.3
Q ss_pred hCCCceeEeeeeccCCCCceec
Q psy17370 169 FNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-.|--.|+ .|++|||||.++
T Consensus 29 ~~Gef~~l--LGPSGcGKTTlL 48 (352)
T COG3842 29 KKGEFVTL--LGPSGCGKTTLL 48 (352)
T ss_pred cCCcEEEE--ECCCCCCHHHHH
Confidence 34544443 599999999987
No 351
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=32.11 E-value=17 Score=37.90 Aligned_cols=18 Identities=39% Similarity=0.471 Sum_probs=14.9
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
++-.+..|+||||||+.|
T Consensus 488 ~gh~~I~G~tGsGKS~l~ 505 (852)
T PRK13891 488 LGHTFMFGPTGAGKSTHL 505 (852)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 344678899999999988
No 352
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=31.90 E-value=12 Score=30.61 Aligned_cols=12 Identities=50% Similarity=0.653 Sum_probs=10.4
Q ss_pred eeccCCCCceec
Q psy17370 179 YGQTGSGKSYRG 190 (262)
Q Consensus 179 YG~tgSGKTyTm 190 (262)
.|.+|||||+.+
T Consensus 1 ~G~sGsGKSTla 12 (163)
T PRK11545 1 MGVSGSGKSAVA 12 (163)
T ss_pred CCCCCCcHHHHH
Confidence 489999999876
No 353
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=31.90 E-value=19 Score=34.38 Aligned_cols=17 Identities=35% Similarity=0.538 Sum_probs=14.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..|+-+|++|+|||+..
T Consensus 117 ~~iLL~GP~GsGKT~lA 133 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLA 133 (413)
T ss_pred ceEEEECCCCcCHHHHH
Confidence 46888999999998854
No 354
>KOG0652|consensus
Probab=31.79 E-value=21 Score=32.45 Aligned_cols=14 Identities=36% Similarity=0.828 Sum_probs=12.2
Q ss_pred eEeeeeccCCCCce
Q psy17370 175 CLFAYGQTGSGKSY 188 (262)
Q Consensus 175 ~ifaYG~tgSGKTy 188 (262)
-++.||+.|+|||.
T Consensus 207 GvLmYGPPGTGKTl 220 (424)
T KOG0652|consen 207 GVLMYGPPGTGKTL 220 (424)
T ss_pred ceEeeCCCCCcHHH
Confidence 37899999999985
No 355
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=31.75 E-value=18 Score=31.60 Aligned_cols=15 Identities=33% Similarity=0.545 Sum_probs=11.0
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-+|+||+|||..-
T Consensus 4 ~~i~GpT~tGKt~~a 18 (233)
T PF01745_consen 4 YLIVGPTGTGKTALA 18 (233)
T ss_dssp EEEE-STTSSHHHHH
T ss_pred EEEECCCCCChhHHH
Confidence 455799999999853
No 356
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.73 E-value=17 Score=33.76 Aligned_cols=18 Identities=22% Similarity=0.324 Sum_probs=14.6
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
.-.++-||+.|+|||..+
T Consensus 38 ~h~~L~~Gp~G~GKTtla 55 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIA 55 (363)
T ss_pred CeEEEEecCCCCCHHHHH
Confidence 345788999999999855
No 357
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=31.67 E-value=19 Score=30.45 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=12.2
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|.+|||||+.+
T Consensus 8 vi~I~G~sGsGKSTl~ 23 (207)
T TIGR00235 8 IIGIGGGSGSGKTTVA 23 (207)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999744
No 358
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.39 E-value=21 Score=32.97 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=17.4
Q ss_pred hhhhCCC-ceeEeeeeccCCCCceec
Q psy17370 166 DAAFNGY-NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 166 ~~~l~G~-n~~ifaYG~tgSGKTyTm 190 (262)
..+-+|. .-.++-||+.|+|||+..
T Consensus 31 ~~i~~~~~~~~~L~~G~~G~GKt~~a 56 (367)
T PRK14970 31 NAIENNHLAQALLFCGPRGVGKTTCA 56 (367)
T ss_pred HHHHcCCCCeEEEEECCCCCCHHHHH
Confidence 3333454 336778999999999765
No 359
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=31.34 E-value=22 Score=34.55 Aligned_cols=17 Identities=24% Similarity=0.339 Sum_probs=14.2
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++-||+.|+|||...
T Consensus 37 ~~~Lf~GPpGtGKTTlA 53 (472)
T PRK14962 37 HAYIFAGPRGTGKTTVA 53 (472)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34788999999999865
No 360
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=31.26 E-value=23 Score=34.66 Aligned_cols=17 Identities=41% Similarity=0.499 Sum_probs=13.9
Q ss_pred eEeeeeccCCCCceecC
Q psy17370 175 CLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~ 191 (262)
.++-.|++|||||+-|-
T Consensus 34 iv~L~G~SGsGKSTLLr 50 (504)
T TIGR03238 34 LLFLCGSSGDGKSEILA 50 (504)
T ss_pred EEEEECCCCCCHHHHHh
Confidence 34668999999999775
No 361
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=31.19 E-value=39 Score=30.89 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=20.2
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.|. ...+.-||..|||||.-+
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~ 113 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLS 113 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHH
Confidence 5567778752 344568999999999733
No 362
>PTZ00035 Rad51 protein; Provisional
Probab=31.18 E-value=36 Score=31.45 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=21.6
Q ss_pred chhhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 161 AQPLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 161 ~~plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
..+-++.+|.|. ...+.-||..|+|||.-+
T Consensus 103 G~~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~ 135 (337)
T PTZ00035 103 GSTQLDKLLGGGIETGSITELFGEFRTGKTQLC 135 (337)
T ss_pred CcHHHHHHhCCCCCCCeEEEEECCCCCchhHHH
Confidence 346677888754 445667899999999743
No 363
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=31.13 E-value=16 Score=35.73 Aligned_cols=45 Identities=20% Similarity=0.263 Sum_probs=28.1
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+.|+.+.+....-..+.+. ++. +...+..|+-+|.+|+||++.-
T Consensus 192 ~~~~~~liG~s~~~~~~~~~-----~~~-~a~~~~pvli~Ge~GtGK~~lA 236 (534)
T TIGR01817 192 SGKEDGIIGKSPAMRQVVDQ-----ARV-VARSNSTVLLRGESGTGKELIA 236 (534)
T ss_pred cCccCceEECCHHHHHHHHH-----HHH-HhCcCCCEEEECCCCccHHHHH
Confidence 36777777654433333322 222 2356777889999999998854
No 364
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=31.12 E-value=21 Score=28.19 Aligned_cols=13 Identities=38% Similarity=0.473 Sum_probs=10.4
Q ss_pred eeeeccCCCCcee
Q psy17370 177 FAYGQTGSGKSYR 189 (262)
Q Consensus 177 faYG~tgSGKTyT 189 (262)
.-.|++|||||.-
T Consensus 3 ~i~GpsGsGKstl 15 (137)
T cd00071 3 VLSGPSGVGKSTL 15 (137)
T ss_pred EEECCCCCCHHHH
Confidence 3469999999973
No 365
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=31.01 E-value=25 Score=36.27 Aligned_cols=18 Identities=28% Similarity=0.263 Sum_probs=14.9
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
.+.++-+|++|+|||+..
T Consensus 488 ~~~~Lf~GP~GvGKT~lA 505 (758)
T PRK11034 488 VGSFLFAGPTGVGKTEVT 505 (758)
T ss_pred cceEEEECCCCCCHHHHH
Confidence 357888999999999754
No 366
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=30.79 E-value=24 Score=32.42 Aligned_cols=16 Identities=31% Similarity=0.364 Sum_probs=13.2
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-+|+|+||||...
T Consensus 5 ~i~I~GPTAsGKT~la 20 (308)
T COG0324 5 LIVIAGPTASGKTALA 20 (308)
T ss_pred EEEEECCCCcCHHHHH
Confidence 4677899999999854
No 367
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=30.76 E-value=19 Score=30.57 Aligned_cols=16 Identities=38% Similarity=0.441 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.+.-.|++|||||..|
T Consensus 30 ~~~i~G~NGsGKSTll 45 (213)
T cd03279 30 LFLICGPTGAGKSTIL 45 (213)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445799999998765
No 368
>PRK14701 reverse gyrase; Provisional
Probab=30.74 E-value=30 Score=38.90 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=19.0
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCce
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTy 188 (262)
..+..+++|.+.. +.++||||||.
T Consensus 86 ~~i~~il~G~d~l--i~APTGsGKTl 109 (1638)
T PRK14701 86 TWAKRILRGKSFS--IVAPTGMGKST 109 (1638)
T ss_pred HHHHHHHcCCCEE--EEEcCCCCHHH
Confidence 4566788998865 45799999997
No 369
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=30.73 E-value=18 Score=35.78 Aligned_cols=16 Identities=31% Similarity=0.407 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|.+|+|||+++
T Consensus 352 vIaLVGPtGvGKTTta 367 (559)
T PRK12727 352 VIALVGPTGAGKTTTI 367 (559)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3444599999999987
No 370
>KOG2035|consensus
Probab=30.64 E-value=31 Score=31.54 Aligned_cols=28 Identities=36% Similarity=0.483 Sum_probs=18.3
Q ss_pred hhHhhhh-CCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAF-NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l-~G~n~~ifaYG~tgSGKTyTm 190 (262)
+.+..+. .|----++.||++|+||-..+
T Consensus 23 ~~Lksl~~~~d~PHll~yGPSGaGKKTri 51 (351)
T KOG2035|consen 23 NLLKSLSSTGDFPHLLVYGPSGAGKKTRI 51 (351)
T ss_pred HHHHHhcccCCCCeEEEECCCCCCchhhH
Confidence 4444433 354455789999999996544
No 371
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=30.63 E-value=20 Score=35.97 Aligned_cols=19 Identities=21% Similarity=0.125 Sum_probs=15.3
Q ss_pred eeEeeeeccCCCCceecCC
Q psy17370 174 VCLFAYGQTGSGKSYRGDS 192 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm~G 192 (262)
+-++..|.-|||||.||..
T Consensus 15 ~~~~V~Ag~GSGKT~~L~~ 33 (664)
T TIGR01074 15 GPCLVLAGAGSGKTRVITN 33 (664)
T ss_pred CCEEEEecCCCCHHHHHHH
Confidence 4467788999999999853
No 372
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=30.62 E-value=29 Score=37.67 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=19.1
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..++.|.+..+ -++||||||+.
T Consensus 85 ~~i~~il~G~d~vi--~ApTGsGKT~f 109 (1171)
T TIGR01054 85 MWAKRVLRGDSFAI--IAPTGVGKTTF 109 (1171)
T ss_pred HHHHHHhCCCeEEE--ECCCCCCHHHH
Confidence 44567889998664 56999999963
No 373
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=30.51 E-value=38 Score=29.80 Aligned_cols=39 Identities=26% Similarity=0.028 Sum_probs=26.5
Q ss_pred eEeee-eccCCCCceecCCCCCCCchHhhhhhccccccCccceEEEEEEEE
Q psy17370 175 CLFAY-GQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVV 224 (262)
Q Consensus 175 ~ifaY-G~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~~~~~~~vS~~E 224 (262)
.|.|. |++|+||+.-+ |++..+...+....++-.|-|.-
T Consensus 34 ~VTAlIGPSGcGKST~L-----------R~lNRmndl~~~~r~~G~v~~~g 73 (253)
T COG1117 34 KVTALIGPSGCGKSTLL-----------RCLNRMNDLIPGARVEGEVLLDG 73 (253)
T ss_pred ceEEEECCCCcCHHHHH-----------HHHHhhcccCcCceEEEEEEECC
Confidence 34454 99999998755 77777766666656665555543
No 374
>PRK09354 recA recombinase A; Provisional
Probab=30.47 E-value=35 Score=31.89 Aligned_cols=30 Identities=30% Similarity=0.349 Sum_probs=22.2
Q ss_pred chhhHhhhhC-CC---ceeEeeeeccCCCCceec
Q psy17370 161 AQPLLDAAFN-GY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 161 ~~plv~~~l~-G~---n~~ifaYG~tgSGKTyTm 190 (262)
..+-++.+|. |. ...+.-||+.|||||.-.
T Consensus 44 Gi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLa 77 (349)
T PRK09354 44 GSLALDIALGIGGLPRGRIVEIYGPESSGKTTLA 77 (349)
T ss_pred CcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 3467788887 43 446778999999999743
No 375
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=30.47 E-value=19 Score=33.69 Aligned_cols=16 Identities=31% Similarity=0.453 Sum_probs=13.9
Q ss_pred EeeeeccCCCCceecC
Q psy17370 176 LFAYGQTGSGKSYRGD 191 (262)
Q Consensus 176 ifaYG~tgSGKTyTm~ 191 (262)
++++|..|||||+.+.
T Consensus 4 ~i~~GgrgSGKS~~~~ 19 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIA 19 (396)
T ss_pred EEEeCCCCcccHHHHH
Confidence 5789999999999874
No 376
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=30.47 E-value=17 Score=35.64 Aligned_cols=47 Identities=15% Similarity=0.182 Sum_probs=28.6
Q ss_pred ceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 138 SYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 138 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
...+.||.+.+....-..+.+. +.. +...+.-|+-+|.+|+||++..
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~-----~~~-~A~~~~pvlI~GE~GtGK~~lA 244 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQ-----ARK-LAMLDAPLLITGDTGTGKDLLA 244 (520)
T ss_pred cccccccceeECCHHHHHHHHH-----HHH-HhCCCCCEEEECCCCccHHHHH
Confidence 3457788877654332222222 222 2345667889999999998754
No 377
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=30.41 E-value=23 Score=32.28 Aligned_cols=22 Identities=27% Similarity=0.351 Sum_probs=16.4
Q ss_pred hCCC-ceeEeeeeccCCCCceec
Q psy17370 169 FNGY-NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 169 l~G~-n~~ifaYG~tgSGKTyTm 190 (262)
-+|. ...++-||+.|+|||.+.
T Consensus 31 ~~~~~~~~~Ll~G~~G~GKt~~a 53 (355)
T TIGR02397 31 KNGRIAHAYLFSGPRGTGKTSIA 53 (355)
T ss_pred HcCCCCeEEEEECCCCCCHHHHH
Confidence 3454 346788999999999765
No 378
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=30.41 E-value=25 Score=37.43 Aligned_cols=26 Identities=27% Similarity=0.322 Sum_probs=20.1
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|..++.+.+.+ +-.|.-|+||||+|
T Consensus 354 Av~~il~s~~v~-vv~G~AGTGKTT~l 379 (988)
T PRK13889 354 ALAHVTDGRDLG-VVVGYAGTGKSAML 379 (988)
T ss_pred HHHHHhcCCCeE-EEEeCCCCCHHHHH
Confidence 456677776654 47799999999986
No 379
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=30.38 E-value=24 Score=36.17 Aligned_cols=17 Identities=29% Similarity=0.354 Sum_probs=13.9
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
+.++-+|++|+|||+..
T Consensus 485 ~~~lf~Gp~GvGKT~lA 501 (731)
T TIGR02639 485 GSFLFTGPTGVGKTELA 501 (731)
T ss_pred eeEEEECCCCccHHHHH
Confidence 46778899999999654
No 380
>PRK00300 gmk guanylate kinase; Provisional
Probab=30.35 E-value=24 Score=29.37 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|.+|||||..+
T Consensus 7 ~i~i~G~sGsGKstl~ 22 (205)
T PRK00300 7 LIVLSGPSGAGKSTLV 22 (205)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999743
No 381
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=30.10 E-value=33 Score=29.16 Aligned_cols=25 Identities=28% Similarity=0.581 Sum_probs=16.7
Q ss_pred HhhhhC-CC--ceeEeeeeccCCCCcee
Q psy17370 165 LDAAFN-GY--NVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 165 v~~~l~-G~--n~~ifaYG~tgSGKTyT 189 (262)
++.+|. |. ...+.-+|.+|+|||.-
T Consensus 5 LD~~l~gGi~~g~~~li~G~~G~GKt~~ 32 (224)
T TIGR03880 5 LDEMLGGGFPEGHVIVVIGEYGTGKTTF 32 (224)
T ss_pred hHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence 455564 32 44556689999999764
No 382
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=30.06 E-value=24 Score=24.33 Aligned_cols=14 Identities=43% Similarity=0.465 Sum_probs=10.8
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
+--|..|||||..+
T Consensus 3 ~i~G~~gsGKst~~ 16 (69)
T cd02019 3 AITGGSGSGKSTVA 16 (69)
T ss_pred EEECCCCCCHHHHH
Confidence 34599999998754
No 383
>KOG0924|consensus
Probab=30.06 E-value=27 Score=35.66 Aligned_cols=20 Identities=35% Similarity=0.413 Sum_probs=16.8
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
+-|..|.-.|.||||||.-+
T Consensus 369 r~n~vvvivgETGSGKTTQl 388 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTTQL 388 (1042)
T ss_pred hhCcEEEEEecCCCCchhhh
Confidence 56777888899999999766
No 384
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=29.95 E-value=39 Score=32.78 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=20.6
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyT 189 (262)
+-++.+|.|. ..+++-.|++|+|||.-
T Consensus 250 ~~lD~~lgGG~~~gs~~li~G~~G~GKt~l 279 (484)
T TIGR02655 250 VRLDEMCGGGFFKDSIILATGATGTGKTLL 279 (484)
T ss_pred HhHHHHhcCCccCCcEEEEECCCCCCHHHH
Confidence 5567778753 55678899999999863
No 385
>KOG1970|consensus
Probab=29.88 E-value=25 Score=34.88 Aligned_cols=19 Identities=37% Similarity=0.566 Sum_probs=14.3
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
|.+. ++-.|++|+|||.|+
T Consensus 109 ~~~i-LLltGPsGcGKSTtv 127 (634)
T KOG1970|consen 109 GSRI-LLLTGPSGCGKSTTV 127 (634)
T ss_pred CceE-EEEeCCCCCCchhHH
Confidence 3344 445699999999988
No 386
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=29.83 E-value=19 Score=36.44 Aligned_cols=17 Identities=24% Similarity=0.124 Sum_probs=13.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..+++-..||+|||+..
T Consensus 17 ~~lliEA~TGtGKTlAY 33 (636)
T TIGR03117 17 RIGMLEASTGVGKTLAM 33 (636)
T ss_pred CeEEEEcCCCCcHHHHH
Confidence 45778889999999643
No 387
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=29.79 E-value=27 Score=34.22 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=18.7
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..|..+|+|.+ |++..+||||||..-
T Consensus 58 ~~IP~~l~g~D--vi~~A~TGsGKT~Af 83 (513)
T COG0513 58 AAIPLILAGRD--VLGQAQTGTGKTAAF 83 (513)
T ss_pred HHHHHHhCCCC--EEEECCCCChHHHHH
Confidence 33556788866 566779999998643
No 388
>PRK14530 adenylate kinase; Provisional
Probab=29.72 E-value=23 Score=30.09 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=11.7
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|..|||||.-
T Consensus 6 I~i~G~pGsGKsT~ 19 (215)
T PRK14530 6 ILLLGAPGAGKGTQ 19 (215)
T ss_pred EEEECCCCCCHHHH
Confidence 66789999999863
No 389
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=29.69 E-value=22 Score=30.09 Aligned_cols=13 Identities=46% Similarity=0.680 Sum_probs=11.3
Q ss_pred EeeeeccCCCCce
Q psy17370 176 LFAYGQTGSGKSY 188 (262)
Q Consensus 176 ifaYG~tgSGKTy 188 (262)
|+-+|..|||||.
T Consensus 2 I~i~G~pGsGKsT 14 (210)
T TIGR01351 2 LVLLGPPGSGKGT 14 (210)
T ss_pred EEEECCCCCCHHH
Confidence 5678999999976
No 390
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=29.55 E-value=19 Score=31.85 Aligned_cols=14 Identities=21% Similarity=0.254 Sum_probs=11.4
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
+-+|++|+|||--|
T Consensus 25 ~i~G~NGsGKS~ll 38 (270)
T cd03242 25 VLVGENAQGKTNLL 38 (270)
T ss_pred EEECCCCCCHHHHH
Confidence 35799999998755
No 391
>COG1204 Superfamily II helicase [General function prediction only]
Probab=29.55 E-value=26 Score=36.25 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=13.9
Q ss_pred hhCCCceeEeeeeccCCCCcee
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyT 189 (262)
+++|.|+.|- -+||||||-.
T Consensus 44 ~~~~~N~li~--aPTgsGKTlI 63 (766)
T COG1204 44 LLSDENVLIS--APTGSGKTLI 63 (766)
T ss_pred ccCCCcEEEE--cCCCCchHHH
Confidence 3446676554 4999999963
No 392
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=29.52 E-value=23 Score=30.99 Aligned_cols=14 Identities=43% Similarity=0.382 Sum_probs=11.5
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
.-.|++|||||.-|
T Consensus 35 aI~GpSGSGKSTLL 48 (226)
T COG1136 35 AIVGPSGSGKSTLL 48 (226)
T ss_pred EEECCCCCCHHHHH
Confidence 44699999999855
No 393
>KOG0739|consensus
Probab=29.44 E-value=23 Score=32.81 Aligned_cols=44 Identities=25% Similarity=0.456 Sum_probs=26.5
Q ss_pred eeCCCCCcchhhcccchhhH-hhhhCCC---ceeEeeeeccCCCCcee
Q psy17370 146 CLGQDTDQTSVFTIIAQPLL-DAAFNGY---NVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 146 vf~~~~~q~~vy~~~~~plv-~~~l~G~---n~~ifaYG~tgSGKTyT 189 (262)
|-+-+...+-+-+.++.|+- -.+|.|. -..|+-||+.|+||+|-
T Consensus 135 VAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYL 182 (439)
T KOG0739|consen 135 VAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYL 182 (439)
T ss_pred hccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHH
Confidence 33333334444444444542 3455555 35689999999999984
No 394
>PRK13850 type IV secretion system protein VirD4; Provisional
Probab=29.30 E-value=40 Score=34.30 Aligned_cols=28 Identities=21% Similarity=0.283 Sum_probs=20.4
Q ss_pred CCceeEeeeeccCCCCceecCCCCCCCchHhhhhhc
Q psy17370 171 GYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFY 206 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~ 206 (262)
+.+.-++.+|.||||||..+ +||..+.+
T Consensus 137 ~~~~hvlviApTgSGKgvg~--------VIPnLL~~ 164 (670)
T PRK13850 137 GEQPHSLVVAPTRAGKGVGV--------VIPTLLTF 164 (670)
T ss_pred CCCceEEEEecCCCCceeee--------hHhHHhcC
Confidence 33445778899999999877 46666654
No 395
>PRK14527 adenylate kinase; Provisional
Probab=29.27 E-value=26 Score=29.08 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=13.2
Q ss_pred eeEeeeeccCCCCcee
Q psy17370 174 VCLFAYGQTGSGKSYR 189 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyT 189 (262)
-.|+-+|..|||||..
T Consensus 7 ~~i~i~G~pGsGKsT~ 22 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQ 22 (191)
T ss_pred cEEEEECCCCCCHHHH
Confidence 3578899999999874
No 396
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.27 E-value=18 Score=35.38 Aligned_cols=14 Identities=43% Similarity=0.451 Sum_probs=11.3
Q ss_pred eeeccCCCCceecC
Q psy17370 178 AYGQTGSGKSYRGD 191 (262)
Q Consensus 178 aYG~tgSGKTyTm~ 191 (262)
-+|.||||||-..+
T Consensus 2 L~g~TGsGKT~v~l 15 (505)
T TIGR00595 2 LFGVTGSGKTEVYL 15 (505)
T ss_pred ccCCCCCCHHHHHH
Confidence 37999999997653
No 397
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=29.20 E-value=23 Score=36.19 Aligned_cols=16 Identities=31% Similarity=0.679 Sum_probs=13.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-||+.|+|||+.+
T Consensus 214 giLL~GppGtGKT~la 229 (733)
T TIGR01243 214 GVLLYGPPGTGKTLLA 229 (733)
T ss_pred eEEEECCCCCChHHHH
Confidence 4778999999999864
No 398
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=29.18 E-value=24 Score=32.28 Aligned_cols=15 Identities=33% Similarity=0.434 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|+||||||.-
T Consensus 6 ~i~i~GptgsGKt~l 20 (307)
T PRK00091 6 VIVIVGPTASGKTAL 20 (307)
T ss_pred EEEEECCCCcCHHHH
Confidence 467789999999973
No 399
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=29.11 E-value=26 Score=26.27 Aligned_cols=15 Identities=27% Similarity=0.202 Sum_probs=11.9
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.-.|.+|+|||.-+
T Consensus 2 V~iiG~~~~GKSTli 16 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLI 16 (116)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345799999999854
No 400
>PRK13880 conjugal transfer coupling protein TraG; Provisional
Probab=29.03 E-value=31 Score=34.88 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=14.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
.-++.+|.||||||..+
T Consensus 176 ~HvlviapTgSGKgvg~ 192 (636)
T PRK13880 176 EHVLTYAPTRSGKGVGL 192 (636)
T ss_pred ceEEEEecCCCCCceEE
Confidence 34678899999999977
No 401
>TIGR03783 Bac_Flav_CT_G Bacteroides conjugation system ATPase, TraG family. Members of this family include the predicted ATPase, TraG, encoded by transfer region genes of conjugative transposons of Bacteroides, such as CTnDOT, found on the main chromosome. Members also include TraG homologs borne on plasmids in Bacteroides. The protein family is related to the conjugative transfer system ATPase VirB4.
Probab=28.92 E-value=19 Score=37.61 Aligned_cols=18 Identities=44% Similarity=0.623 Sum_probs=15.6
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
|.-.+..|++|+|||..|
T Consensus 438 n~N~~I~G~sGsGKS~l~ 455 (829)
T TIGR03783 438 NRNKFILGPSGSGKSFFT 455 (829)
T ss_pred cCceEEECCCCCCHHHHH
Confidence 566788899999999987
No 402
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=28.84 E-value=18 Score=37.56 Aligned_cols=19 Identities=37% Similarity=0.293 Sum_probs=15.9
Q ss_pred CceeEeeeeccCCCCceec
Q psy17370 172 YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm 190 (262)
-++-.+..|+||+|||..|
T Consensus 455 d~g~~~i~G~tGsGKS~l~ 473 (818)
T PRK13830 455 DVGHTLIFGPTGSGKSTLL 473 (818)
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3555788999999999988
No 403
>TIGR02759 TraD_Ftype type IV conjugative transfer system coupling protein TraD. The TraD protein performs an essential coupling function in conjugative type IV secretion systems. This protein sits at the inner membrane in contact with the assembled pilus and its scaffold as well as the relaxosome-plasmid DNA complex (through TraM).
Probab=28.84 E-value=19 Score=35.74 Aligned_cols=15 Identities=47% Similarity=0.567 Sum_probs=12.3
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
++.+|.||||||..|
T Consensus 179 ~li~G~tGsGKs~~i 193 (566)
T TIGR02759 179 ILIHGTTGSGKSVAI 193 (566)
T ss_pred eEEEcCCCCCHHHHH
Confidence 567899999999644
No 404
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=28.70 E-value=23 Score=34.05 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=13.7
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
.-|+-+|++|+|||+..
T Consensus 48 ~~ILLiGppG~GKT~lA 64 (441)
T TIGR00390 48 KNILMIGPTGVGKTEIA 64 (441)
T ss_pred ceEEEECCCCCCHHHHH
Confidence 34778999999998744
No 405
>PRK10689 transcription-repair coupling factor; Provisional
Probab=28.66 E-value=24 Score=38.15 Aligned_cols=38 Identities=16% Similarity=0.201 Sum_probs=21.9
Q ss_pred CCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 148 GQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 148 ~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+...|.+++..+... +-.+..--++..|+||+|||-.
T Consensus 600 ~~T~~Q~~aI~~il~d----~~~~~~~d~Ll~a~TGsGKT~v 637 (1147)
T PRK10689 600 ETTPDQAQAINAVLSD----MCQPLAMDRLVCGDVGFGKTEV 637 (1147)
T ss_pred CCCHHHHHHHHHHHHH----hhcCCCCCEEEEcCCCcCHHHH
Confidence 4555565555443322 1122233477889999999964
No 406
>KOG0925|consensus
Probab=28.63 E-value=33 Score=33.71 Aligned_cols=20 Identities=35% Similarity=0.368 Sum_probs=17.0
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
+.|.+|.--|.||||||.-+
T Consensus 60 ~~nQ~~v~vGetgsGKttQi 79 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQI 79 (699)
T ss_pred hcCceEEEEecCCCCccccC
Confidence 56788888999999999755
No 407
>PRK10867 signal recognition particle protein; Provisional
Probab=28.60 E-value=27 Score=33.56 Aligned_cols=18 Identities=22% Similarity=0.447 Sum_probs=14.5
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
-..|+..|.+|+|||.|.
T Consensus 100 p~vI~~vG~~GsGKTTta 117 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTA 117 (433)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 345667799999999876
No 408
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=28.58 E-value=42 Score=31.23 Aligned_cols=28 Identities=29% Similarity=0.361 Sum_probs=20.4
Q ss_pred chhhHhhhhCCC---ceeEeeeeccCCCCce
Q psy17370 161 AQPLLDAAFNGY---NVCLFAYGQTGSGKSY 188 (262)
Q Consensus 161 ~~plv~~~l~G~---n~~ifaYG~tgSGKTy 188 (262)
..+-++.+|.|. .....-||..|||||.
T Consensus 111 G~~~LD~lLgGGi~~G~ItEI~G~~GsGKTq 141 (344)
T PLN03187 111 GSQALDELLGGGIETRCITEAFGEFRSGKTQ 141 (344)
T ss_pred CcHhHHhhcCCCCCCCeEEEEecCCCCChhH
Confidence 346677888753 3345689999999997
No 409
>PF14553 YqbF: YqbF, hypothetical protein domain; PDB: 2HJQ_A.
Probab=28.45 E-value=25 Score=22.51 Aligned_cols=9 Identities=33% Similarity=0.552 Sum_probs=6.9
Q ss_pred CCceecCCC
Q psy17370 185 GKSYRGDST 193 (262)
Q Consensus 185 GKTyTm~G~ 193 (262)
||||+.+|-
T Consensus 3 GktY~~~g~ 11 (43)
T PF14553_consen 3 GKTYYAMGH 11 (43)
T ss_dssp -SEEEETTE
T ss_pred CcEEEEeee
Confidence 899999884
No 410
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=28.43 E-value=22 Score=34.21 Aligned_cols=20 Identities=40% Similarity=0.700 Sum_probs=15.1
Q ss_pred CCCceeEeeeeccCCCCceecC
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.++|.+ -.|++|+||||.-.
T Consensus 208 ~~~Nli--~lGp~GTGKThla~ 227 (449)
T TIGR02688 208 PNYNLI--ELGPKGTGKSYIYN 227 (449)
T ss_pred cCCcEE--EECCCCCCHHHHHH
Confidence 566654 57999999998653
No 411
>COG1162 Predicted GTPases [General function prediction only]
Probab=28.40 E-value=33 Score=31.33 Aligned_cols=26 Identities=31% Similarity=0.391 Sum_probs=19.1
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+...|.|. .++|+ ||+|-||+.-+
T Consensus 156 ~~l~~~l~~~-~svl~-GqSGVGKSSLi 181 (301)
T COG1162 156 EELAELLAGK-ITVLL-GQSGVGKSTLI 181 (301)
T ss_pred HHHHHHhcCC-eEEEE-CCCCCcHHHHH
Confidence 3455677777 56665 99999999855
No 412
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=28.38 E-value=25 Score=31.84 Aligned_cols=15 Identities=40% Similarity=0.574 Sum_probs=12.1
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-.|+||||||.-.
T Consensus 2 i~i~G~t~~GKs~la 16 (287)
T TIGR00174 2 IFIMGPTAVGKSQLA 16 (287)
T ss_pred EEEECCCCCCHHHHH
Confidence 567799999999743
No 413
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=28.25 E-value=28 Score=28.66 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=13.6
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|+|||...
T Consensus 6 ~I~liG~~GaGKStl~ 21 (172)
T PRK05057 6 NIFLVGPMGAGKSTIG 21 (172)
T ss_pred EEEEECCCCcCHHHHH
Confidence 5788899999998754
No 414
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=28.20 E-value=23 Score=29.36 Aligned_cols=15 Identities=33% Similarity=0.379 Sum_probs=11.8
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.--|.+|||||+..
T Consensus 2 i~i~G~sgsGKttla 16 (179)
T cd02028 2 VGIAGPSGSGKTTFA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999855
No 415
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=28.10 E-value=15 Score=38.85 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=11.5
Q ss_pred eeccCCCCceecC
Q psy17370 179 YGQTGSGKSYRGD 191 (262)
Q Consensus 179 YG~tgSGKTyTm~ 191 (262)
+--+|||||.||+
T Consensus 279 WHtqGSGKTlTm~ 291 (962)
T COG0610 279 WHTQGSGKTLTMF 291 (962)
T ss_pred EeecCCchHHHHH
Confidence 5679999999996
No 416
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=28.03 E-value=16 Score=33.23 Aligned_cols=16 Identities=25% Similarity=0.264 Sum_probs=12.8
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.--|.+|||||.++
T Consensus 64 IIGIaG~~GSGKSTla 79 (290)
T TIGR00554 64 IISIAGSVAVGKSTTA 79 (290)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445599999999987
No 417
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=28.03 E-value=22 Score=34.47 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=11.0
Q ss_pred eeccCCCCceec
Q psy17370 179 YGQTGSGKSYRG 190 (262)
Q Consensus 179 YG~tgSGKTyTm 190 (262)
-|.||+|||-|+
T Consensus 25 aGATGTGKTvTL 36 (502)
T PF05872_consen 25 AGATGTGKTVTL 36 (502)
T ss_pred eccCCCCceehH
Confidence 499999999998
No 418
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=27.98 E-value=21 Score=33.22 Aligned_cols=13 Identities=38% Similarity=0.434 Sum_probs=11.4
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-.|++|+|||.++
T Consensus 34 llGPSGcGKSTlL 46 (338)
T COG3839 34 LLGPSGCGKSTLL 46 (338)
T ss_pred EECCCCCCHHHHH
Confidence 3599999999987
No 419
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=27.96 E-value=23 Score=36.36 Aligned_cols=37 Identities=27% Similarity=0.171 Sum_probs=24.5
Q ss_pred CCceeEeeeeccCCCCceecC---------CCC-----CCCchHhhhhhcc
Q psy17370 171 GYNVCLFAYGQTGSGKSYRGD---------STL-----NSSVLRPRVLFYP 207 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm~---------G~~-----~~~Giipr~~~~l 207 (262)
|.....+-+|.||||||---+ |.. .+-++.|+.++.+
T Consensus 215 ~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf 265 (730)
T COG1198 215 GGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARF 265 (730)
T ss_pred ccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHH
Confidence 334455667999999995332 222 5677778777765
No 420
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.90 E-value=22 Score=35.45 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=18.2
Q ss_pred hhHhhhh-CCCc-eeEeeeeccCCCCceec
Q psy17370 163 PLLDAAF-NGYN-VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l-~G~n-~~ifaYG~tgSGKTyTm 190 (262)
..+...+ .|.- -.++-||+.|+|||...
T Consensus 26 ~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA 55 (585)
T PRK14950 26 QTLRNAIAEGRVAHAYLFTGPRGVGKTSTA 55 (585)
T ss_pred HHHHHHHHhCCCceEEEEECCCCCCHHHHH
Confidence 3334433 3442 34678999999999765
No 421
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=27.84 E-value=26 Score=34.07 Aligned_cols=28 Identities=32% Similarity=0.484 Sum_probs=19.5
Q ss_pred CCCceeEeeeeccCCCCceecCCCCCCCchHhh
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR 202 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr 202 (262)
-|+| ++-||+.|||||.... .-+||+|-
T Consensus 197 GgHn--Ll~~GpPGtGKTmla~---Rl~~lLPp 224 (490)
T COG0606 197 GGHN--LLLVGPPGTGKTMLAS---RLPGLLPP 224 (490)
T ss_pred cCCc--EEEecCCCCchHHhhh---hhcccCCC
Confidence 3555 6789999999998663 23566554
No 422
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=27.79 E-value=46 Score=30.44 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=19.7
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.|. ...+..||..|+|||.-+
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~ 113 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLC 113 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHH
Confidence 4566766643 344678999999998644
No 423
>KOG0344|consensus
Probab=27.72 E-value=28 Score=34.50 Aligned_cols=26 Identities=23% Similarity=0.303 Sum_probs=18.3
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+.+-.++++-+ ++|.++||||||+.-
T Consensus 165 ~aipvfl~~r~--~lAcapTGsgKtlaf 190 (593)
T KOG0344|consen 165 QAIPVFLEKRD--VLACAPTGSGKTLAF 190 (593)
T ss_pred hhhhhhhcccc--eEEeccCCCcchhhh
Confidence 33444555555 689999999998754
No 424
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=27.65 E-value=23 Score=29.63 Aligned_cols=14 Identities=50% Similarity=0.828 Sum_probs=9.7
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
+-.|..||||||.+
T Consensus 4 ~~~G~pGsGKS~~a 17 (193)
T PF05707_consen 4 LITGKPGSGKSYYA 17 (193)
T ss_dssp EEE--TTSSHHHHH
T ss_pred EEEcCCCCcHhHHH
Confidence 45699999999955
No 425
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=27.62 E-value=26 Score=31.21 Aligned_cols=15 Identities=40% Similarity=0.572 Sum_probs=12.5
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||+-
T Consensus 4 liil~G~pGSGKSTl 18 (300)
T PHA02530 4 IILTVGVPGSGKSTW 18 (300)
T ss_pred EEEEEcCCCCCHHHH
Confidence 467789999999874
No 426
>KOG0742|consensus
Probab=27.55 E-value=28 Score=33.55 Aligned_cols=13 Identities=38% Similarity=0.882 Sum_probs=11.7
Q ss_pred eEeeeeccCCCCc
Q psy17370 175 CLFAYGQTGSGKS 187 (262)
Q Consensus 175 ~ifaYG~tgSGKT 187 (262)
-|+-||+.|+|||
T Consensus 386 NilfyGPPGTGKT 398 (630)
T KOG0742|consen 386 NILFYGPPGTGKT 398 (630)
T ss_pred heeeeCCCCCCch
Confidence 4789999999997
No 427
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=27.55 E-value=36 Score=35.53 Aligned_cols=18 Identities=33% Similarity=0.628 Sum_probs=14.0
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
-.|+-|.. .||+|||||-
T Consensus 74 ~lNiDI~M--ETGTGKTy~Y 91 (985)
T COG3587 74 KLNIDILM--ETGTGKTYTY 91 (985)
T ss_pred cceeeEEE--ecCCCceeeH
Confidence 45666766 8999999975
No 428
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=27.37 E-value=24 Score=30.27 Aligned_cols=13 Identities=46% Similarity=0.478 Sum_probs=11.3
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-.|++|+|||..|
T Consensus 28 i~GpNGsGKStll 40 (243)
T cd03272 28 VVGRNGSGKSNFF 40 (243)
T ss_pred EECCCCCCHHHHH
Confidence 4699999999876
No 429
>PRK06851 hypothetical protein; Provisional
Probab=27.37 E-value=42 Score=31.55 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=21.9
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+.+.++++.+-.++--|..|+|||++|
T Consensus 20 s~~~~~~~~~~~~~il~G~pGtGKStl~ 47 (367)
T PRK06851 20 SLYDSIIDGANRIFILKGGPGTGKSTLM 47 (367)
T ss_pred hhhhhhccccceEEEEECCCCCCHHHHH
Confidence 3445566677777888899999999988
No 430
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=27.34 E-value=42 Score=31.36 Aligned_cols=31 Identities=32% Similarity=0.476 Sum_probs=21.7
Q ss_pred ccchhhHhhhh-CCCceeEeeeeccCCCCceecC
Q psy17370 159 IIAQPLLDAAF-NGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 159 ~~~~plv~~~l-~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
+..-.+|+.++ +|+. .|-||..|.|||+-+.
T Consensus 76 s~~P~lId~~fr~g~~--~~~~gdsg~GKttllL 107 (402)
T COG3598 76 SNSPQLIDEFFRKGYV--SILYGDSGVGKTTLLL 107 (402)
T ss_pred ccChhhhhHHhhcCee--EEEecCCcccHhHHHH
Confidence 33446666665 4664 4679999999998653
No 431
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=27.34 E-value=23 Score=34.70 Aligned_cols=22 Identities=23% Similarity=0.262 Sum_probs=16.4
Q ss_pred hCCC-ceeEeeeeccCCCCceec
Q psy17370 169 FNGY-NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 169 l~G~-n~~ifaYG~tgSGKTyTm 190 (262)
..|. .-.++-||+.|+|||.+.
T Consensus 38 ~~~ri~~a~Lf~Gp~G~GKTT~A 60 (507)
T PRK06645 38 LNDRLAGGYLLTGIRGVGKTTSA 60 (507)
T ss_pred HcCCCCceEEEECCCCCCHHHHH
Confidence 3443 246788999999999865
No 432
>PHA02774 E1; Provisional
Probab=27.26 E-value=33 Score=34.33 Aligned_cols=25 Identities=36% Similarity=0.647 Sum_probs=18.6
Q ss_pred HhhhhCCC--ceeEeeeeccCCCCcee
Q psy17370 165 LDAAFNGY--NVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 165 v~~~l~G~--n~~ifaYG~tgSGKTyT 189 (262)
+..++.|. ..|++-||+.|+||||-
T Consensus 424 lk~~l~~~PKknciv~~GPP~TGKS~f 450 (613)
T PHA02774 424 LKDFLKGIPKKNCLVIYGPPDTGKSMF 450 (613)
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHH
Confidence 34455553 35889999999999984
No 433
>PRK00279 adk adenylate kinase; Reviewed
Probab=27.26 E-value=28 Score=29.56 Aligned_cols=13 Identities=38% Similarity=0.675 Sum_probs=11.7
Q ss_pred EeeeeccCCCCce
Q psy17370 176 LFAYGQTGSGKSY 188 (262)
Q Consensus 176 ifaYG~tgSGKTy 188 (262)
|+-+|..|||||.
T Consensus 3 I~v~G~pGsGKsT 15 (215)
T PRK00279 3 LILLGPPGAGKGT 15 (215)
T ss_pred EEEECCCCCCHHH
Confidence 6789999999986
No 434
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=27.24 E-value=24 Score=28.67 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=11.9
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-.|..|+|||.+.
T Consensus 3 ~~~~G~~G~GKTt~~ 17 (173)
T cd03115 3 ILLVGLQGVGKTTTA 17 (173)
T ss_pred EEEECCCCCCHHHHH
Confidence 344599999999875
No 435
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=27.16 E-value=29 Score=28.72 Aligned_cols=15 Identities=33% Similarity=0.523 Sum_probs=12.0
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-.|++|||||..+
T Consensus 5 i~l~G~sGsGKsTl~ 19 (186)
T PRK10078 5 IWLMGPSGSGKDSLL 19 (186)
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999999854
No 436
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=27.09 E-value=29 Score=33.31 Aligned_cols=18 Identities=28% Similarity=0.429 Sum_probs=14.7
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
-..++..|.+|+|||.|.
T Consensus 99 p~vi~~vG~~GsGKTTta 116 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTC 116 (428)
T ss_pred CEEEEEECCCCCcHHHHH
Confidence 346777799999999885
No 437
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=27.02 E-value=21 Score=32.31 Aligned_cols=16 Identities=31% Similarity=0.409 Sum_probs=13.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|.+|||||..+
T Consensus 8 ~i~i~G~~GsGKtt~~ 23 (288)
T PRK05416 8 LVIVTGLSGAGKSVAL 23 (288)
T ss_pred EEEEECCCCCcHHHHH
Confidence 4677899999999877
No 438
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=27.02 E-value=21 Score=29.43 Aligned_cols=12 Identities=50% Similarity=0.523 Sum_probs=0.0
Q ss_pred eeccCCCCceec
Q psy17370 179 YGQTGSGKSYRG 190 (262)
Q Consensus 179 YG~tgSGKTyTm 190 (262)
+|..|||||.-+
T Consensus 5 iG~N~sGKS~il 16 (303)
T PF13304_consen 5 IGPNGSGKSNIL 16 (303)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 699999999876
No 439
>PRK13946 shikimate kinase; Provisional
Probab=26.92 E-value=26 Score=28.98 Aligned_cols=16 Identities=38% Similarity=0.540 Sum_probs=13.5
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||..-
T Consensus 12 ~I~l~G~~GsGKsti~ 27 (184)
T PRK13946 12 TVVLVGLMGAGKSTVG 27 (184)
T ss_pred eEEEECCCCCCHHHHH
Confidence 5888899999999843
No 440
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=26.77 E-value=29 Score=28.73 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=11.0
Q ss_pred EeeeeccCCCCce
Q psy17370 176 LFAYGQTGSGKSY 188 (262)
Q Consensus 176 ifaYG~tgSGKTy 188 (262)
+|-.|.+|||||.
T Consensus 2 ~li~G~~~sGKS~ 14 (169)
T cd00544 2 ILVTGGARSGKSR 14 (169)
T ss_pred EEEECCCCCCHHH
Confidence 5678999999975
No 441
>KOG0735|consensus
Probab=26.77 E-value=26 Score=35.95 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=14.2
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
.-|+-||+.|+||||-.
T Consensus 702 ~giLLyGppGcGKT~la 718 (952)
T KOG0735|consen 702 TGILLYGPPGCGKTLLA 718 (952)
T ss_pred cceEEECCCCCcHHHHH
Confidence 44789999999999954
No 442
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=26.71 E-value=27 Score=35.70 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=13.0
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-||+.|+|||+..
T Consensus 489 giLL~GppGtGKT~la 504 (733)
T TIGR01243 489 GVLLFGPPGTGKTLLA 504 (733)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3666999999999854
No 443
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=26.68 E-value=20 Score=32.17 Aligned_cols=17 Identities=29% Similarity=0.313 Sum_probs=14.2
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
-.+.-+|++|+|||.++
T Consensus 76 ~~i~~~G~~g~GKTtl~ 92 (270)
T PRK06731 76 QTIALIGPTGVGKTTTL 92 (270)
T ss_pred CEEEEECCCCCcHHHHH
Confidence 45677899999999976
No 444
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=26.66 E-value=32 Score=26.43 Aligned_cols=15 Identities=40% Similarity=0.375 Sum_probs=11.7
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-.|.+|||||.-+
T Consensus 14 ~~i~G~nGsGKStLl 28 (137)
T PF00005_consen 14 VAIVGPNGSGKSTLL 28 (137)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEEccCCCccccce
Confidence 345699999999854
No 445
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=26.56 E-value=28 Score=33.42 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.1
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...|.-.|.+|+|||.|.
T Consensus 100 ~~vi~lvG~~GvGKTTta 117 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTC 117 (429)
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456777899999999987
No 446
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=26.56 E-value=26 Score=30.52 Aligned_cols=15 Identities=33% Similarity=0.417 Sum_probs=12.4
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-.|..|||||+..
T Consensus 2 Ivl~G~pGSGKST~a 16 (249)
T TIGR03574 2 IILTGLPGVGKSTFS 16 (249)
T ss_pred EEEEcCCCCCHHHHH
Confidence 567799999999855
No 447
>PLN02165 adenylate isopentenyltransferase
Probab=26.55 E-value=27 Score=32.39 Aligned_cols=16 Identities=44% Similarity=0.563 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|+||||||...
T Consensus 45 iivIiGPTGSGKStLA 60 (334)
T PLN02165 45 VVVIMGATGSGKSRLS 60 (334)
T ss_pred EEEEECCCCCcHHHHH
Confidence 3455799999999754
No 448
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=26.40 E-value=27 Score=28.18 Aligned_cols=16 Identities=44% Similarity=0.677 Sum_probs=12.6
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||+.-
T Consensus 4 ~i~~~G~~GsGKst~~ 19 (171)
T PRK03731 4 PLFLVGARGCGKTTVG 19 (171)
T ss_pred eEEEECCCCCCHHHHH
Confidence 3666799999999853
No 449
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=26.39 E-value=22 Score=28.86 Aligned_cols=13 Identities=31% Similarity=0.256 Sum_probs=10.5
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-.|.+|||||..+
T Consensus 4 i~G~~gsGKTtl~ 16 (155)
T TIGR00176 4 IVGPKNSGKTTLI 16 (155)
T ss_pred EECCCCCCHHHHH
Confidence 3499999999865
No 450
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=26.10 E-value=27 Score=30.86 Aligned_cols=19 Identities=32% Similarity=0.593 Sum_probs=15.6
Q ss_pred CceeEeeeeccCCCCceec
Q psy17370 172 YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm 190 (262)
....|.-.|.+|+||+.++
T Consensus 30 ~~~~IllvG~tGvGKSSli 48 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTI 48 (249)
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4456788999999999975
No 451
>KOG0922|consensus
Probab=26.05 E-value=37 Score=34.26 Aligned_cols=18 Identities=50% Similarity=0.619 Sum_probs=13.7
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
|..+.--|.||||||.-+
T Consensus 66 nqvlIviGeTGsGKSTQi 83 (674)
T KOG0922|consen 66 NQVLIVIGETGSGKSTQI 83 (674)
T ss_pred CCEEEEEcCCCCCccccH
Confidence 444556699999999766
No 452
>PRK00254 ski2-like helicase; Provisional
Probab=26.03 E-value=30 Score=35.28 Aligned_cols=21 Identities=33% Similarity=0.401 Sum_probs=16.1
Q ss_pred hhCCCceeEeeeeccCCCCceec
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+++|.|+.+ ..+||||||..-
T Consensus 36 ~~~g~nvlv--~apTGsGKT~~~ 56 (720)
T PRK00254 36 VLEGKNLVL--AIPTASGKTLVA 56 (720)
T ss_pred HhCCCcEEE--ECCCCcHHHHHH
Confidence 578888654 459999999854
No 453
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=25.99 E-value=36 Score=35.63 Aligned_cols=17 Identities=24% Similarity=0.409 Sum_probs=14.0
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
+.++-.|++|+|||+..
T Consensus 597 ~~~lf~Gp~GvGKT~lA 613 (852)
T TIGR03345 597 GVFLLVGPSGVGKTETA 613 (852)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 46778899999999854
No 454
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=25.88 E-value=61 Score=34.60 Aligned_cols=21 Identities=29% Similarity=0.385 Sum_probs=14.8
Q ss_pred eeEeeeeccCCCCce-------ecCCCC
Q psy17370 174 VCLFAYGQTGSGKSY-------RGDSTL 194 (262)
Q Consensus 174 ~~ifaYG~tgSGKTy-------Tm~G~~ 194 (262)
+.+.-+|+||+|||. .+||..
T Consensus 27 gl~~I~G~nGaGKSTildAI~~aL~G~~ 54 (1042)
T TIGR00618 27 PIFLICGKTGAGKTTLLDAITYALYGKL 54 (1042)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 344457999999964 557764
No 455
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=25.87 E-value=24 Score=34.84 Aligned_cols=21 Identities=24% Similarity=0.525 Sum_probs=17.1
Q ss_pred hCCCceeEeeeeccCCCCcee
Q psy17370 169 FNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTyT 189 (262)
+...+..|+-+|.+|+||++.
T Consensus 238 ~A~s~~pVLI~GE~GTGKe~~ 258 (538)
T PRK15424 238 YARSSAAVLIQGETGTGKELA 258 (538)
T ss_pred HhCCCCcEEEECCCCCCHHHH
Confidence 346678899999999999763
No 456
>PHA02558 uvsW UvsW helicase; Provisional
Probab=25.84 E-value=40 Score=32.80 Aligned_cols=25 Identities=16% Similarity=0.080 Sum_probs=17.8
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|..++.+.++ +...+||+|||.++
T Consensus 122 av~~~l~~~~~--il~apTGsGKT~i~ 146 (501)
T PHA02558 122 AVYEGLKNNRR--LLNLPTSAGKSLIQ 146 (501)
T ss_pred HHHHHHhcCce--EEEeCCCCCHHHHH
Confidence 34566676665 44679999999865
No 457
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=25.83 E-value=30 Score=36.08 Aligned_cols=17 Identities=24% Similarity=0.161 Sum_probs=13.5
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++..|+||||||..+
T Consensus 18 ~~vIi~a~TGSGKTT~v 34 (819)
T TIGR01970 18 PQVVLEAPPGAGKSTAV 34 (819)
T ss_pred CcEEEECCCCCCHHHHH
Confidence 35667899999999854
No 458
>PRK02496 adk adenylate kinase; Provisional
Probab=25.77 E-value=31 Score=28.32 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=11.6
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|..|||||..
T Consensus 4 i~i~G~pGsGKst~ 17 (184)
T PRK02496 4 LIFLGPPGAGKGTQ 17 (184)
T ss_pred EEEECCCCCCHHHH
Confidence 56689999999874
No 459
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=25.74 E-value=33 Score=35.27 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=18.2
Q ss_pred HhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
|..++.+.. .++-.|..|+||||+|-
T Consensus 361 v~~i~~s~~-~~il~G~aGTGKTtll~ 386 (744)
T TIGR02768 361 VRHVTGSGD-IAVVVGRAGTGKSTMLK 386 (744)
T ss_pred HHHHhcCCC-EEEEEecCCCCHHHHHH
Confidence 444555433 45567999999999884
No 460
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=25.74 E-value=23 Score=34.93 Aligned_cols=22 Identities=18% Similarity=0.502 Sum_probs=17.6
Q ss_pred hCCCceeEeeeeccCCCCceec
Q psy17370 169 FNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+...+..|+-+|.+|+||++..
T Consensus 231 ~A~~~~pVLI~GE~GTGKe~lA 252 (526)
T TIGR02329 231 YARSDATVLILGESGTGKELVA 252 (526)
T ss_pred HhCCCCcEEEECCCCcCHHHHH
Confidence 3456788999999999997743
No 461
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=25.60 E-value=29 Score=28.69 Aligned_cols=16 Identities=44% Similarity=0.652 Sum_probs=12.6
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.+.-.|.+|||||+.+
T Consensus 5 ~i~l~G~sGsGKSTl~ 20 (176)
T PRK09825 5 SYILMGVSGSGKSLIG 20 (176)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556899999999854
No 462
>PRK05480 uridine/cytidine kinase; Provisional
Probab=25.56 E-value=36 Score=28.57 Aligned_cols=16 Identities=31% Similarity=0.362 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.--|.+|||||+..
T Consensus 8 iI~I~G~sGsGKTTl~ 23 (209)
T PRK05480 8 IIGIAGGSGSGKTTVA 23 (209)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4555699999999754
No 463
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=25.49 E-value=21 Score=32.20 Aligned_cols=27 Identities=30% Similarity=0.528 Sum_probs=18.9
Q ss_pred hHhhhhCC---CceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNG---YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G---~n~~ifaYG~tgSGKTyTm 190 (262)
++..+|.| ....++.||..|+||+..+
T Consensus 64 ~lg~~L~~~~~~~~~~~l~G~g~nGKStl~ 93 (304)
T TIGR01613 64 VIGYSLTGNYTEQKLFFLYGNGGNGKSTFQ 93 (304)
T ss_pred HHhHHhcCCCCceEEEEEECCCCCcHHHHH
Confidence 33444444 3567899999999998754
No 464
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=25.49 E-value=31 Score=28.54 Aligned_cols=14 Identities=36% Similarity=0.456 Sum_probs=11.9
Q ss_pred eEeeeeccCCCCce
Q psy17370 175 CLFAYGQTGSGKSY 188 (262)
Q Consensus 175 ~ifaYG~tgSGKTy 188 (262)
.++-.|.+|||||.
T Consensus 3 ~ili~G~~~sGKS~ 16 (170)
T PRK05800 3 LILVTGGARSGKSR 16 (170)
T ss_pred EEEEECCCCccHHH
Confidence 36788999999975
No 465
>PRK05541 adenylylsulfate kinase; Provisional
Probab=25.46 E-value=32 Score=27.95 Aligned_cols=16 Identities=31% Similarity=0.534 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||...
T Consensus 9 ~I~i~G~~GsGKst~a 24 (176)
T PRK05541 9 VIWITGLAGSGKTTIA 24 (176)
T ss_pred EEEEEcCCCCCHHHHH
Confidence 5666899999998754
No 466
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=25.39 E-value=30 Score=28.74 Aligned_cols=14 Identities=43% Similarity=0.392 Sum_probs=11.1
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
+-+|.+|||||--+
T Consensus 26 ~i~G~NGsGKSnil 39 (178)
T cd03239 26 AIVGPNGSGKSNIV 39 (178)
T ss_pred EEECCCCCCHHHHH
Confidence 46799999998644
No 467
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=25.12 E-value=32 Score=29.81 Aligned_cols=16 Identities=25% Similarity=0.360 Sum_probs=13.7
Q ss_pred eeEeeeeccCCCCcee
Q psy17370 174 VCLFAYGQTGSGKSYR 189 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyT 189 (262)
..+.-+|.+|+|||..
T Consensus 25 ~~~~i~G~~G~GKTtl 40 (230)
T PRK08533 25 SLILIEGDESTGKSIL 40 (230)
T ss_pred cEEEEECCCCCCHHHH
Confidence 3677889999999987
No 468
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=25.11 E-value=30 Score=28.37 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=12.5
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
..+-+|++|+|||+-+
T Consensus 34 l~~i~g~~g~GKT~~~ 49 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLA 49 (193)
T ss_dssp EEEEEECSTSSHHHHH
T ss_pred EEEEEeCCCCCHHHHH
Confidence 3456799999999855
No 469
>PRK14528 adenylate kinase; Provisional
Probab=25.11 E-value=30 Score=28.83 Aligned_cols=15 Identities=27% Similarity=0.574 Sum_probs=12.3
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-.|..|||||...
T Consensus 4 i~i~G~pGsGKtt~a 18 (186)
T PRK14528 4 IIFMGPPGAGKGTQA 18 (186)
T ss_pred EEEECCCCCCHHHHH
Confidence 677899999998753
No 470
>PLN02200 adenylate kinase family protein
Probab=25.08 E-value=31 Score=30.02 Aligned_cols=16 Identities=38% Similarity=0.607 Sum_probs=13.5
Q ss_pred eeEeeeeccCCCCcee
Q psy17370 174 VCLFAYGQTGSGKSYR 189 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyT 189 (262)
..|+-.|..|||||.-
T Consensus 44 ~ii~I~G~PGSGKsT~ 59 (234)
T PLN02200 44 FITFVLGGPGSGKGTQ 59 (234)
T ss_pred EEEEEECCCCCCHHHH
Confidence 4678899999999874
No 471
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.90 E-value=36 Score=32.07 Aligned_cols=26 Identities=19% Similarity=0.259 Sum_probs=17.0
Q ss_pred hHhhhhC-CCc-eeEeeeeccCCCCcee
Q psy17370 164 LLDAAFN-GYN-VCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~-G~n-~~ifaYG~tgSGKTyT 189 (262)
.+...++ |.- -.++-||+.|+|||..
T Consensus 27 ~L~~~~~~~~~~ha~lf~Gp~G~GKtt~ 54 (397)
T PRK14955 27 TIQNSLRMGRVGHGYIFSGLRGVGKTTA 54 (397)
T ss_pred HHHHHHHhCCcceeEEEECCCCCCHHHH
Confidence 4445554 432 2366799999999964
No 472
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=24.86 E-value=22 Score=36.67 Aligned_cols=16 Identities=38% Similarity=0.536 Sum_probs=13.1
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||++|+|||+..
T Consensus 349 ~lll~GppG~GKT~lA 364 (775)
T TIGR00763 349 ILCLVGPPGVGKTSLG 364 (775)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4666999999999754
No 473
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=24.82 E-value=28 Score=35.08 Aligned_cols=17 Identities=24% Similarity=0.317 Sum_probs=14.1
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
-.++-||..|+|||.+.
T Consensus 39 ha~Lf~Gp~GvGKTtlA 55 (618)
T PRK14951 39 HAYLFTGTRGVGKTTVS 55 (618)
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35688999999999865
No 474
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=24.73 E-value=34 Score=36.21 Aligned_cols=20 Identities=20% Similarity=0.200 Sum_probs=14.7
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
+...-++..|+||||||...
T Consensus 470 ~~~~d~Ll~adTGsGKT~va 489 (926)
T TIGR00580 470 PRPMDRLVCGDVGFGKTEVA 489 (926)
T ss_pred cCcCCEEEECCCCccHHHHH
Confidence 33344678899999999754
No 475
>PRK13949 shikimate kinase; Provisional
Probab=24.70 E-value=33 Score=28.15 Aligned_cols=16 Identities=38% Similarity=0.648 Sum_probs=13.0
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|+.|||||...
T Consensus 3 ~I~liG~~GsGKstl~ 18 (169)
T PRK13949 3 RIFLVGYMGAGKTTLG 18 (169)
T ss_pred EEEEECCCCCCHHHHH
Confidence 3778899999999743
No 476
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=24.68 E-value=32 Score=28.75 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=10.6
Q ss_pred EeeeeccCCCCce
Q psy17370 176 LFAYGQTGSGKSY 188 (262)
Q Consensus 176 ifaYG~tgSGKTy 188 (262)
|+-.|++||||+.
T Consensus 3 iiilG~pGaGK~T 15 (178)
T COG0563 3 ILILGPPGAGKST 15 (178)
T ss_pred EEEECCCCCCHHH
Confidence 4567999999975
No 477
>PRK11823 DNA repair protein RadA; Provisional
Probab=24.63 E-value=46 Score=32.02 Aligned_cols=28 Identities=29% Similarity=0.277 Sum_probs=20.9
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.|. ...++-+|..|+|||.-+
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~ 97 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLL 97 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHH
Confidence 4566777643 556788999999999844
No 478
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=24.53 E-value=39 Score=35.31 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=16.6
Q ss_pred HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
|-.+++-..++|+ -|.||||||.-+
T Consensus 58 i~~ai~~~~vvii-~getGsGKTTql 82 (845)
T COG1643 58 ILKAIEQNQVVII-VGETGSGKTTQL 82 (845)
T ss_pred HHHHHHhCCEEEE-eCCCCCChHHHH
Confidence 3444555555554 599999999754
No 479
>PRK04182 cytidylate kinase; Provisional
Probab=24.50 E-value=32 Score=27.64 Aligned_cols=13 Identities=38% Similarity=0.580 Sum_probs=11.1
Q ss_pred EeeeeccCCCCce
Q psy17370 176 LFAYGQTGSGKSY 188 (262)
Q Consensus 176 ifaYG~tgSGKTy 188 (262)
|+-.|..|||||.
T Consensus 3 I~i~G~~GsGKst 15 (180)
T PRK04182 3 ITISGPPGSGKTT 15 (180)
T ss_pred EEEECCCCCCHHH
Confidence 5567999999987
No 480
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=24.39 E-value=48 Score=31.11 Aligned_cols=46 Identities=22% Similarity=0.413 Sum_probs=25.8
Q ss_pred ceeee-ec-eeeCCCCCcchhhcccchhhHhhhhCC---CceeEeeeeccCCCCce
Q psy17370 138 SYTFK-LD-HCLGQDTDQTSVFTIIAQPLLDAAFNG---YNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 138 ~~~f~-FD-~vf~~~~~q~~vy~~~~~plv~~~l~G---~n~~ifaYG~tgSGKTy 188 (262)
.+.|. |+ .+|+. ++.-+..+. .+.....| .+-.+.-.|+.|+|||.
T Consensus 43 ~~~y~~F~~~~~G~----~~~i~~lv~-~l~~~a~g~~~~r~il~L~GPPGsGKSt 93 (361)
T smart00763 43 IKRYRFFDHDFFGM----EEAIERFVN-YFKSAAQGLEERKQILYLLGPVGGGKSS 93 (361)
T ss_pred eeeccccchhccCc----HHHHHHHHH-HHHHHHhcCCCCCcEEEEECCCCCCHHH
Confidence 35565 45 56654 444444342 23333333 34556777999999973
No 481
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=24.37 E-value=33 Score=28.02 Aligned_cols=15 Identities=27% Similarity=0.366 Sum_probs=12.3
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+--|..|||||.-
T Consensus 4 ~i~l~G~~gsGKst~ 18 (175)
T cd00227 4 IIILNGGSSAGKSSI 18 (175)
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999864
No 482
>PRK07667 uridine kinase; Provisional
Probab=24.22 E-value=40 Score=28.16 Aligned_cols=18 Identities=28% Similarity=0.176 Sum_probs=14.0
Q ss_pred CCceeEeeeeccCCCCce
Q psy17370 171 GYNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTy 188 (262)
|.-.-|.-.|..|||||+
T Consensus 15 ~~~~iIgI~G~~gsGKSt 32 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTT 32 (193)
T ss_pred CCCEEEEEECCCCCCHHH
Confidence 444556667999999998
No 483
>KOG0328|consensus
Probab=24.14 E-value=55 Score=30.02 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=19.5
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-|..++.|.++ .|-.|+|+|||-|.
T Consensus 57 Ai~~IlkGrdV--iaQaqSGTGKTa~~ 81 (400)
T KOG0328|consen 57 AIPQILKGRDV--IAQAQSGTGKTATF 81 (400)
T ss_pred hhhhhhcccce--EEEecCCCCceEEE
Confidence 35567899986 56669999998776
No 484
>PRK13909 putative recombination protein RecB; Provisional
Probab=23.94 E-value=22 Score=37.34 Aligned_cols=11 Identities=36% Similarity=0.652 Sum_probs=8.7
Q ss_pred ccCCCCceecC
Q psy17370 181 QTGSGKSYRGD 191 (262)
Q Consensus 181 ~tgSGKTyTm~ 191 (262)
.-||||||||.
T Consensus 6 sAGsGKT~~L~ 16 (910)
T PRK13909 6 SAGSGKTFALS 16 (910)
T ss_pred CCCCchhHHHH
Confidence 45899999883
No 485
>CHL00176 ftsH cell division protein; Validated
Probab=23.93 E-value=31 Score=34.87 Aligned_cols=16 Identities=25% Similarity=0.495 Sum_probs=13.9
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-||+.|+|||+..
T Consensus 218 gVLL~GPpGTGKT~LA 233 (638)
T CHL00176 218 GVLLVGPPGTGKTLLA 233 (638)
T ss_pred eEEEECCCCCCHHHHH
Confidence 4788999999999865
No 486
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=23.93 E-value=36 Score=28.68 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=10.7
Q ss_pred eEeeeeccCCCCce
Q psy17370 175 CLFAYGQTGSGKSY 188 (262)
Q Consensus 175 ~ifaYG~tgSGKTy 188 (262)
+|+=.|+.|||||.
T Consensus 5 ~vlL~Gps~SGKTa 18 (181)
T PF09439_consen 5 TVLLVGPSGSGKTA 18 (181)
T ss_dssp EEEEE-STTSSHHH
T ss_pred eEEEEcCCCCCHHH
Confidence 56667999999986
No 487
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=23.92 E-value=30 Score=33.30 Aligned_cols=15 Identities=33% Similarity=0.512 Sum_probs=13.2
Q ss_pred eeEeeeeccCCCCce
Q psy17370 174 VCLFAYGQTGSGKSY 188 (262)
Q Consensus 174 ~~ifaYG~tgSGKTy 188 (262)
..|+-+|++|+|||.
T Consensus 51 ~~ILliGp~G~GKT~ 65 (443)
T PRK05201 51 KNILMIGPTGVGKTE 65 (443)
T ss_pred ceEEEECCCCCCHHH
Confidence 568899999999985
No 488
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=23.91 E-value=34 Score=26.66 Aligned_cols=15 Identities=33% Similarity=0.428 Sum_probs=11.9
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.-+|..|+|||.-+
T Consensus 3 i~~~G~~~~GKTsl~ 17 (164)
T cd04139 3 VIVVGAGGVGKSALT 17 (164)
T ss_pred EEEECCCCCCHHHHH
Confidence 556899999999743
No 489
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.86 E-value=32 Score=33.66 Aligned_cols=27 Identities=26% Similarity=0.373 Sum_probs=18.4
Q ss_pred hHhhhh-CCCce-eEeeeeccCCCCceec
Q psy17370 164 LLDAAF-NGYNV-CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l-~G~n~-~ifaYG~tgSGKTyTm 190 (262)
.+..++ .|.-. .++-||..|+|||.+.
T Consensus 24 ~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~A 52 (491)
T PRK14964 24 ILRNAFTLNKIPQSILLVGASGVGKTTCA 52 (491)
T ss_pred HHHHHHHcCCCCceEEEECCCCccHHHHH
Confidence 344444 35433 6888999999999843
No 490
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=23.85 E-value=52 Score=30.31 Aligned_cols=29 Identities=31% Similarity=0.398 Sum_probs=21.4
Q ss_pred hhhHhhhhC--CC--ceeEeeeeccCCCCceec
Q psy17370 162 QPLLDAAFN--GY--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 162 ~plv~~~l~--G~--n~~ifaYG~tgSGKTyTm 190 (262)
.+-++.+|. |+ ...+.-||+.|||||.-.
T Consensus 40 i~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLa 72 (321)
T TIGR02012 40 SLSLDLALGVGGLPRGRIIEIYGPESSGKTTLA 72 (321)
T ss_pred CHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHH
Confidence 366777886 44 345778999999999753
No 491
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.69 E-value=31 Score=33.64 Aligned_cols=16 Identities=25% Similarity=0.493 Sum_probs=13.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||+.|+|||.+.
T Consensus 42 a~Lf~GP~GtGKTTlA 57 (484)
T PRK14956 42 AYIFFGPRGVGKTTIA 57 (484)
T ss_pred EEEEECCCCCCHHHHH
Confidence 5788999999999755
No 492
>PF13166 AAA_13: AAA domain
Probab=23.68 E-value=40 Score=34.05 Aligned_cols=13 Identities=54% Similarity=0.859 Sum_probs=11.3
Q ss_pred EeeeeccCCCCce
Q psy17370 176 LFAYGQTGSGKSY 188 (262)
Q Consensus 176 ifaYG~tgSGKTy 188 (262)
-+-||..|||||.
T Consensus 19 n~IYG~NGsGKSt 31 (712)
T PF13166_consen 19 NLIYGRNGSGKST 31 (712)
T ss_pred EEEECCCCCCHHH
Confidence 4679999999986
No 493
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=23.66 E-value=40 Score=26.40 Aligned_cols=16 Identities=31% Similarity=0.275 Sum_probs=13.0
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
-|...|..|+|||.-+
T Consensus 3 ki~v~G~~~~GKSsli 18 (163)
T cd01860 3 KLVLLGDSSVGKSSLV 18 (163)
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999754
No 494
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=23.61 E-value=24 Score=32.60 Aligned_cols=13 Identities=38% Similarity=0.460 Sum_probs=11.1
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-+|++|||||..+
T Consensus 33 LlGpSGaGKsTlL 45 (345)
T COG1118 33 LLGPSGAGKSTLL 45 (345)
T ss_pred EECCCCCcHHHHH
Confidence 3799999999865
No 495
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=23.60 E-value=63 Score=30.01 Aligned_cols=29 Identities=24% Similarity=0.250 Sum_probs=20.6
Q ss_pred hhhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 162 QPLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 162 ~plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
.+-++.+|.|. ...+.-||..|+|||.-+
T Consensus 109 ~~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~ 140 (342)
T PLN03186 109 SRELDKILEGGIETGSITEIYGEFRTGKTQLC 140 (342)
T ss_pred CHHHHHhhcCCCcCceEEEEECCCCCCccHHH
Confidence 35567777653 334668999999999743
No 496
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=23.59 E-value=31 Score=32.33 Aligned_cols=16 Identities=31% Similarity=0.588 Sum_probs=14.1
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
-|.-||.-|.|||+-|
T Consensus 64 GlYl~G~vG~GKT~Lm 79 (362)
T PF03969_consen 64 GLYLWGPVGRGKTMLM 79 (362)
T ss_pred eEEEECCCCCchhHHH
Confidence 3678999999999988
No 497
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=23.56 E-value=41 Score=31.62 Aligned_cols=28 Identities=29% Similarity=0.302 Sum_probs=20.3
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.|. ...++-+|..|+|||.-+
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLl 99 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLL 99 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHH
Confidence 4455666542 456788999999999865
No 498
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=23.46 E-value=28 Score=34.75 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=16.3
Q ss_pred HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+..++.. ..++-.|..|+|||||+
T Consensus 154 ~~~al~~--~~~vitGgpGTGKTt~v 177 (586)
T TIGR01447 154 VALALKS--NFSLITGGPGTGKTTTV 177 (586)
T ss_pred HHHHhhC--CeEEEEcCCCCCHHHHH
Confidence 3445553 33445689999999986
No 499
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=23.44 E-value=35 Score=34.93 Aligned_cols=40 Identities=10% Similarity=0.104 Sum_probs=24.5
Q ss_pred CCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 148 GQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 148 ~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
++-..|++..+ .+++-+..+....++-||..|+|||....
T Consensus 182 ~~~igr~~ei~----~~~~~L~~~~~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 182 DPLIGREDELE----RTIQVLCRRKKNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CcccCcHHHHH----HHHHHHhcCCCCceEEECCCCCCHHHHHH
Confidence 34444544443 34443444444456789999999999774
No 500
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=23.40 E-value=32 Score=28.32 Aligned_cols=15 Identities=40% Similarity=0.377 Sum_probs=11.8
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.-.|..|||||+-.
T Consensus 2 i~itG~~gsGKst~~ 16 (179)
T cd02022 2 IGLTGGIGSGKSTVA 16 (179)
T ss_pred EEEECCCCCCHHHHH
Confidence 456799999998743
Done!