Query psy17370
Match_columns 262
No_of_seqs 220 out of 1587
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 20:41:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17370.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17370hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2vvg_A Kinesin-2; motor protei 100.0 3.8E-45 1.3E-49 335.5 10.5 167 96-262 2-188 (350)
2 1t5c_A CENP-E protein, centrom 100.0 1.8E-44 6.1E-49 331.1 12.5 165 96-262 2-178 (349)
3 3lre_A Kinesin-like protein KI 100.0 1.7E-44 5.8E-49 332.1 11.5 167 96-262 8-204 (355)
4 2owm_A Nckin3-434, related to 100.0 2E-44 6.7E-49 339.8 11.0 167 96-262 36-244 (443)
5 3bfn_A Kinesin-like protein KI 100.0 3.8E-44 1.3E-48 332.2 11.3 169 94-262 17-201 (388)
6 4a14_A Kinesin, kinesin-like p 100.0 5E-44 1.7E-48 327.9 11.8 164 96-262 9-190 (344)
7 1bg2_A Kinesin; motor protein, 100.0 6.7E-44 2.3E-48 324.6 12.5 162 96-262 5-180 (325)
8 3b6u_A Kinesin-like protein KI 100.0 8E-44 2.7E-48 328.8 12.7 167 96-262 19-204 (372)
9 1goj_A Kinesin, kinesin heavy 100.0 1.2E-43 4E-48 326.3 13.4 165 97-262 5-184 (355)
10 2zfi_A Kinesin-like protein KI 100.0 5.7E-44 2E-48 329.8 11.1 167 96-262 2-193 (366)
11 2h58_A Kinesin-like protein KI 100.0 2.4E-43 8.4E-48 321.5 12.5 165 97-262 3-183 (330)
12 1x88_A Kinesin-like protein KI 100.0 1.8E-43 6.2E-48 325.7 11.2 167 96-262 6-202 (359)
13 2heh_A KIF2C protein; kinesin, 100.0 1.6E-43 5.3E-48 328.0 10.7 168 95-262 48-240 (387)
14 3cob_A Kinesin heavy chain-lik 100.0 3.5E-43 1.2E-47 324.4 12.5 164 97-262 4-182 (369)
15 2y65_A Kinesin, kinesin heavy 100.0 5.1E-43 1.8E-47 323.0 11.6 163 96-262 9-187 (365)
16 3gbj_A KIF13B protein; kinesin 100.0 2.4E-43 8.1E-48 324.4 9.1 165 98-262 1-195 (354)
17 1v8k_A Kinesin-like protein KI 100.0 3.2E-43 1.1E-47 327.8 10.1 167 96-262 69-260 (410)
18 2wbe_C Bipolar kinesin KRP-130 100.0 6.1E-43 2.1E-47 323.5 11.5 167 96-262 21-212 (373)
19 2rep_A Kinesin-like protein KI 100.0 1.7E-42 5.8E-47 320.5 10.9 176 84-262 10-227 (376)
20 3u06_A Protein claret segregat 100.0 1.8E-42 6.3E-47 323.7 10.0 178 82-262 45-241 (412)
21 3nwn_A Kinesin-like protein KI 100.0 1.4E-41 4.7E-46 312.9 13.3 161 96-262 22-211 (359)
22 2nr8_A Kinesin-like protein KI 100.0 6E-41 2E-45 308.5 13.3 161 96-262 21-210 (358)
23 1ry6_A Internal kinesin; kines 100.0 7.5E-42 2.5E-46 314.7 6.7 164 99-262 1-188 (360)
24 3t0q_A AGR253WP; kinesin, alph 100.0 1E-40 3.5E-45 306.4 11.6 163 97-262 4-196 (349)
25 1f9v_A Kinesin-like protein KA 100.0 1.5E-40 5.2E-45 304.9 12.1 163 97-262 2-193 (347)
26 4etp_A Kinesin-like protein KA 100.0 2.9E-40 9.8E-45 308.5 9.2 175 83-262 46-249 (403)
27 3dc4_A Kinesin-like protein NO 100.0 1.3E-39 4.5E-44 298.2 8.1 160 96-262 20-196 (344)
28 4h1g_A Maltose binding protein 100.0 1.4E-35 4.8E-40 295.1 10.4 163 97-262 373-565 (715)
29 2o0a_A S.cerevisiae chromosome 99.9 2.5E-27 8.4E-32 208.2 6.2 154 83-261 11-181 (298)
30 3ec2_A DNA replication protein 93.9 0.0065 2.2E-07 48.9 -1.3 50 140-190 6-55 (180)
31 2w58_A DNAI, primosome compone 92.7 0.018 6.2E-07 46.9 -0.4 50 140-190 21-71 (202)
32 2qgz_A Helicase loader, putati 91.7 0.03 1E-06 49.5 -0.2 49 141-190 121-169 (308)
33 4etp_B Spindle POLE BODY-assoc 89.7 0.59 2E-05 41.5 6.2 126 84-232 47-181 (333)
34 3t15_A Ribulose bisphosphate c 88.6 0.13 4.3E-06 45.0 1.1 48 143-190 2-53 (293)
35 1jbk_A CLPB protein; beta barr 87.4 0.15 5.1E-06 39.9 0.8 29 162-190 32-60 (195)
36 2p65_A Hypothetical protein PF 86.4 0.16 5.6E-06 39.7 0.5 28 163-190 33-60 (187)
37 2v1u_A Cell division control p 84.6 0.22 7.5E-06 44.0 0.5 45 145-190 16-61 (387)
38 2bjv_A PSP operon transcriptio 84.0 0.2 6.7E-06 42.6 -0.1 45 140-190 2-46 (265)
39 3te6_A Regulatory protein SIR3 83.9 0.19 6.4E-06 44.9 -0.3 23 168-190 40-62 (318)
40 1qde_A EIF4A, translation init 83.7 0.34 1.1E-05 39.7 1.2 24 164-189 44-67 (224)
41 1l8q_A Chromosomal replication 83.7 0.29 9.7E-06 42.9 0.8 49 139-190 6-54 (324)
42 2kjq_A DNAA-related protein; s 83.4 0.34 1.2E-05 37.9 1.0 16 175-190 38-53 (149)
43 1vec_A ATP-dependent RNA helic 83.0 0.45 1.5E-05 38.3 1.7 26 163-190 32-57 (206)
44 2gxq_A Heat resistant RNA depe 82.8 0.38 1.3E-05 38.7 1.2 24 164-189 31-54 (207)
45 2r62_A Cell division protease 81.7 0.26 8.9E-06 41.7 -0.3 51 139-190 6-61 (268)
46 3dkp_A Probable ATP-dependent 81.4 0.46 1.6E-05 39.6 1.2 25 163-189 58-82 (245)
47 3bor_A Human initiation factor 81.1 0.31 1.1E-05 40.6 0.0 25 163-189 59-83 (237)
48 3h4m_A Proteasome-activating n 80.2 0.24 8.1E-06 42.3 -1.0 52 139-190 12-68 (285)
49 1g8p_A Magnesium-chelatase 38 79.9 0.41 1.4E-05 41.9 0.4 45 138-190 18-62 (350)
50 3bos_A Putative DNA replicatio 79.6 0.68 2.3E-05 37.8 1.6 19 172-190 51-69 (242)
51 2pl3_A Probable ATP-dependent 79.1 0.61 2.1E-05 38.6 1.2 25 163-189 54-78 (236)
52 3b6e_A Interferon-induced heli 78.3 0.35 1.2E-05 39.0 -0.5 25 164-190 41-65 (216)
53 3fmo_B ATP-dependent RNA helic 78.1 0.67 2.3E-05 40.4 1.2 26 164-189 122-147 (300)
54 2chg_A Replication factor C sm 78.0 0.54 1.9E-05 37.5 0.5 21 170-190 35-55 (226)
55 1p9r_A General secretion pathw 77.9 0.71 2.4E-05 42.6 1.4 27 164-190 158-184 (418)
56 1t6n_A Probable ATP-dependent 77.9 0.69 2.4E-05 37.7 1.2 26 163-190 43-68 (220)
57 1ixz_A ATP-dependent metallopr 77.8 0.14 4.8E-06 43.2 -3.2 15 176-190 52-66 (254)
58 4b4t_M 26S protease regulatory 77.5 1.2 4.1E-05 41.4 2.8 115 98-212 123-271 (434)
59 2z4s_A Chromosomal replication 77.4 0.57 2E-05 43.3 0.6 50 137-190 98-147 (440)
60 1d2n_A N-ethylmaleimide-sensit 77.4 0.97 3.3E-05 38.3 2.0 21 170-190 61-81 (272)
61 1wrb_A DJVLGB; RNA helicase, D 77.3 0.74 2.5E-05 38.5 1.2 25 163-189 52-76 (253)
62 3cf0_A Transitional endoplasmi 76.3 0.38 1.3E-05 41.9 -0.9 51 140-190 11-66 (301)
63 2qby_A CDC6 homolog 1, cell di 76.2 0.73 2.5E-05 40.4 0.9 20 171-190 43-62 (386)
64 3d8b_A Fidgetin-like protein 1 76.2 0.35 1.2E-05 43.3 -1.2 50 141-190 81-134 (357)
65 3fe2_A Probable ATP-dependent 76.1 0.72 2.5E-05 38.4 0.8 24 164-189 59-82 (242)
66 3eiq_A Eukaryotic initiation f 75.9 0.95 3.2E-05 40.3 1.6 25 163-189 69-93 (414)
67 3b9p_A CG5977-PA, isoform A; A 75.7 0.38 1.3E-05 41.3 -1.1 51 140-190 17-71 (297)
68 3llm_A ATP-dependent RNA helic 75.6 0.65 2.2E-05 38.7 0.4 26 163-190 68-93 (235)
69 3iuy_A Probable ATP-dependent 75.6 1 3.5E-05 36.9 1.6 24 164-189 50-73 (228)
70 2oxc_A Probable ATP-dependent 75.6 0.89 3E-05 37.5 1.2 24 164-189 54-77 (230)
71 3uk6_A RUVB-like 2; hexameric 75.0 0.76 2.6E-05 40.6 0.7 45 141-190 41-87 (368)
72 3ber_A Probable ATP-dependent 75.0 0.92 3.2E-05 38.2 1.2 25 164-190 73-97 (249)
73 3ly5_A ATP-dependent RNA helic 74.9 0.73 2.5E-05 39.2 0.5 25 163-189 83-107 (262)
74 1fnn_A CDC6P, cell division co 74.4 0.85 2.9E-05 40.3 0.9 39 151-190 20-61 (389)
75 4b4t_L 26S protease subunit RP 73.8 0.84 2.9E-05 42.5 0.7 90 101-190 126-232 (437)
76 3jvv_A Twitching mobility prot 73.5 0.9 3.1E-05 41.0 0.8 27 164-190 114-140 (356)
77 1xwi_A SKD1 protein; VPS4B, AA 73.0 0.52 1.8E-05 41.6 -0.9 50 141-190 9-62 (322)
78 1q0u_A Bstdead; DEAD protein, 71.9 0.68 2.3E-05 37.9 -0.4 24 164-189 34-57 (219)
79 3fmp_B ATP-dependent RNA helic 71.9 1.4 4.9E-05 40.5 1.8 26 164-189 122-147 (479)
80 3fht_A ATP-dependent RNA helic 71.7 1.2 4.1E-05 39.5 1.2 27 163-189 54-80 (412)
81 2jlq_A Serine protease subunit 71.4 1.7 5.6E-05 40.1 2.1 26 163-189 10-35 (451)
82 2c9o_A RUVB-like 1; hexameric 70.9 1.2 4.1E-05 41.2 1.0 45 141-190 34-80 (456)
83 1sxj_D Activator 1 41 kDa subu 70.7 1.2 4.1E-05 38.8 0.9 24 167-190 52-75 (353)
84 4b4t_K 26S protease regulatory 70.6 1.1 3.7E-05 41.6 0.6 114 100-213 116-263 (428)
85 3co5_A Putative two-component 70.0 1.1 3.7E-05 34.3 0.4 17 174-190 28-44 (143)
86 3pey_A ATP-dependent RNA helic 69.8 1.4 4.7E-05 38.7 1.1 26 164-189 35-60 (395)
87 2qby_B CDC6 homolog 3, cell di 69.4 1 3.6E-05 39.7 0.2 39 151-190 23-62 (384)
88 2fz4_A DNA repair protein RAD2 68.6 1.8 6.1E-05 36.2 1.5 24 165-190 102-125 (237)
89 3n70_A Transport activator; si 68.4 1.4 4.8E-05 33.7 0.8 20 171-190 22-41 (145)
90 2eyu_A Twitching motility prot 67.7 1.8 6.1E-05 37.1 1.4 18 173-190 25-42 (261)
91 2j0s_A ATP-dependent RNA helic 67.5 2 6.9E-05 38.2 1.7 24 164-189 67-90 (410)
92 2z0m_A 337AA long hypothetical 67.3 1.6 5.6E-05 37.4 1.0 25 164-190 24-48 (337)
93 1sxj_C Activator 1 40 kDa subu 67.3 1.4 4.7E-05 38.8 0.6 22 169-190 42-63 (340)
94 3fho_A ATP-dependent RNA helic 67.2 1.8 6.2E-05 40.4 1.4 26 164-189 149-174 (508)
95 3syl_A Protein CBBX; photosynt 67.1 2.1 7E-05 36.7 1.7 19 172-190 66-84 (309)
96 1njg_A DNA polymerase III subu 67.1 1.1 3.8E-05 36.0 -0.1 17 174-190 46-62 (250)
97 4b4t_J 26S protease regulatory 67.0 2.4 8.1E-05 39.0 2.1 74 140-213 144-239 (405)
98 3h1t_A Type I site-specific re 66.8 1.6 5.5E-05 41.4 1.0 24 167-191 193-216 (590)
99 2x8a_A Nuclear valosin-contain 66.7 0.32 1.1E-05 42.0 -3.7 49 141-190 7-61 (274)
100 1u0j_A DNA replication protein 66.7 2 6.9E-05 37.2 1.5 28 163-190 91-121 (267)
101 1s2m_A Putative ATP-dependent 66.3 1.5 5.1E-05 38.9 0.6 25 164-190 51-75 (400)
102 3oiy_A Reverse gyrase helicase 66.2 2 6.9E-05 38.5 1.4 25 163-189 28-52 (414)
103 2qz4_A Paraplegin; AAA+, SPG7, 65.9 1.5 5.1E-05 36.5 0.5 18 173-190 39-56 (262)
104 3pvs_A Replication-associated 65.8 2.3 7.7E-05 39.5 1.7 42 148-190 26-67 (447)
105 3vfd_A Spastin; ATPase, microt 65.7 0.96 3.3E-05 40.8 -0.8 52 139-190 110-165 (389)
106 3eie_A Vacuolar protein sortin 65.2 1.1 3.8E-05 39.2 -0.5 50 141-190 15-68 (322)
107 2ewv_A Twitching motility prot 64.3 2.2 7.4E-05 38.5 1.3 18 173-190 136-153 (372)
108 1tue_A Replication protein E1; 63.9 1.7 6E-05 36.4 0.5 26 165-190 48-75 (212)
109 2qp9_X Vacuolar protein sortin 63.6 1.5 5E-05 39.2 -0.0 51 140-190 47-101 (355)
110 3u61_B DNA polymerase accessor 63.0 1.8 6.3E-05 37.5 0.5 17 174-190 49-65 (324)
111 1sxj_E Activator 1 40 kDa subu 62.9 2.3 7.8E-05 37.2 1.1 15 176-190 39-53 (354)
112 1rif_A DAR protein, DNA helica 62.6 1.3 4.5E-05 37.7 -0.5 24 165-190 122-145 (282)
113 3pfi_A Holliday junction ATP-d 62.4 2.3 7.8E-05 37.1 1.0 39 151-190 32-72 (338)
114 3i5x_A ATP-dependent RNA helic 61.8 3.3 0.00011 38.8 2.1 27 163-189 101-127 (563)
115 2i4i_A ATP-dependent RNA helic 61.8 3 0.0001 37.0 1.7 24 165-190 46-69 (417)
116 2oap_1 GSPE-2, type II secreti 61.7 2.2 7.6E-05 40.3 0.9 20 169-190 258-277 (511)
117 1ofh_A ATP-dependent HSL prote 61.5 1.7 5.8E-05 37.0 0.0 18 173-190 50-67 (310)
118 1lv7_A FTSH; alpha/beta domain 61.5 1.7 5.8E-05 36.4 0.0 17 174-190 46-62 (257)
119 2chq_A Replication factor C sm 61.3 2 6.7E-05 36.7 0.4 21 170-190 35-55 (319)
120 1iy2_A ATP-dependent metallopr 60.7 1.8 6.1E-05 36.9 0.0 15 176-190 76-90 (278)
121 2zan_A Vacuolar protein sortin 60.6 1.2 4E-05 41.2 -1.3 51 140-190 130-184 (444)
122 2db3_A ATP-dependent RNA helic 60.5 3.2 0.00011 37.8 1.7 23 165-189 87-109 (434)
123 1w5s_A Origin recognition comp 60.1 2.3 8E-05 37.7 0.7 25 166-190 40-69 (412)
124 2v1x_A ATP-dependent DNA helic 60.0 4.1 0.00014 39.1 2.4 25 163-189 51-75 (591)
125 1hv8_A Putative ATP-dependent 59.4 2.5 8.4E-05 36.6 0.7 25 165-190 37-61 (367)
126 4b4t_I 26S protease regulatory 59.1 5.6 0.00019 36.9 3.1 113 101-213 127-273 (437)
127 4a2p_A RIG-I, retinoic acid in 59.1 2.9 0.0001 38.6 1.2 25 164-190 15-39 (556)
128 1gvn_B Zeta; postsegregational 59.0 3.4 0.00012 35.7 1.6 17 174-190 34-50 (287)
129 1iqp_A RFCS; clamp loader, ext 58.7 2.1 7.2E-05 36.7 0.1 21 170-190 43-63 (327)
130 2p5t_B PEZT; postsegregational 57.3 3.5 0.00012 34.6 1.3 35 155-189 13-48 (253)
131 1xti_A Probable ATP-dependent 57.1 4.1 0.00014 35.7 1.8 26 163-190 37-62 (391)
132 1hqc_A RUVB; extended AAA-ATPa 57.0 3.2 0.00011 35.7 1.0 19 172-190 37-55 (324)
133 4b3f_X DNA-binding protein smu 57.0 2.7 9.2E-05 40.6 0.5 26 165-191 198-223 (646)
134 3tbk_A RIG-I helicase domain; 56.2 3.5 0.00012 37.9 1.2 24 164-189 12-35 (555)
135 1fuu_A Yeast initiation factor 55.7 2 6.8E-05 37.7 -0.6 24 164-189 51-74 (394)
136 3b85_A Phosphate starvation-in 55.5 3.7 0.00013 33.8 1.1 26 163-190 14-39 (208)
137 2fwr_A DNA repair protein RAD2 55.2 3.7 0.00013 37.5 1.1 25 164-190 101-125 (472)
138 2r44_A Uncharacterized protein 54.8 1.7 5.8E-05 37.9 -1.2 16 175-190 48-63 (331)
139 3sqw_A ATP-dependent RNA helic 54.3 5.2 0.00018 37.8 2.0 27 163-189 50-76 (579)
140 1in4_A RUVB, holliday junction 53.5 2.8 9.5E-05 36.9 -0.0 16 175-190 53-68 (334)
141 3hu3_A Transitional endoplasmi 53.4 2.7 9.1E-05 39.5 -0.1 19 172-190 237-255 (489)
142 1sxj_B Activator 1 37 kDa subu 53.3 3.6 0.00012 35.1 0.7 21 170-190 39-59 (323)
143 1c4o_A DNA nucleotide excision 52.8 4.5 0.00016 39.3 1.4 40 147-191 7-46 (664)
144 4b4t_H 26S protease regulatory 52.7 1 3.4E-05 42.3 -3.1 74 140-213 205-300 (467)
145 4fcw_A Chaperone protein CLPB; 52.7 3.3 0.00011 35.3 0.4 17 174-190 48-64 (311)
146 2ykg_A Probable ATP-dependent 52.5 5.1 0.00017 38.5 1.7 25 163-189 20-44 (696)
147 4gl2_A Interferon-induced heli 50.7 5.3 0.00018 38.4 1.5 26 163-190 14-39 (699)
148 2gza_A Type IV secretion syste 50.6 4.7 0.00016 36.1 1.0 21 168-190 172-192 (361)
149 1n0w_A DNA repair protein RAD5 50.3 5 0.00017 32.7 1.1 28 163-190 11-41 (243)
150 4gp7_A Metallophosphoesterase; 49.9 3.7 0.00013 32.3 0.2 16 176-191 12-27 (171)
151 4ag6_A VIRB4 ATPase, type IV s 49.7 3.5 0.00012 37.0 0.0 16 175-190 37-52 (392)
152 1w36_D RECD, exodeoxyribonucle 49.5 3.7 0.00013 39.5 0.2 17 174-190 165-181 (608)
153 1e9r_A Conjugal transfer prote 49.3 3.6 0.00012 37.4 0.0 18 173-190 53-70 (437)
154 3pxg_A Negative regulator of g 49.0 6.1 0.00021 36.6 1.6 27 164-190 192-218 (468)
155 2ehv_A Hypothetical protein PH 48.7 5.5 0.00019 32.6 1.1 15 176-190 33-47 (251)
156 1ojl_A Transcriptional regulat 48.6 4.7 0.00016 35.0 0.7 20 171-190 23-42 (304)
157 1wp9_A ATP-dependent RNA helic 48.6 4.8 0.00016 35.9 0.7 24 164-190 17-40 (494)
158 2w0m_A SSO2452; RECA, SSPF, un 47.7 6.4 0.00022 31.6 1.3 28 163-190 10-40 (235)
159 3lw7_A Adenylate kinase relate 47.5 5 0.00017 30.5 0.6 16 175-190 3-18 (179)
160 1rz3_A Hypothetical protein rb 46.9 6 0.00021 31.8 1.1 17 174-190 23-39 (201)
161 2r8r_A Sensor protein; KDPD, P 46.7 4.1 0.00014 34.4 -0.0 18 174-191 7-24 (228)
162 1um8_A ATP-dependent CLP prote 46.6 4.9 0.00017 35.7 0.5 18 173-190 72-89 (376)
163 1oyw_A RECQ helicase, ATP-depe 46.0 4.6 0.00016 38.0 0.2 26 163-190 32-57 (523)
164 1sxj_A Activator 1 95 kDa subu 45.9 5.3 0.00018 37.4 0.6 17 174-190 78-94 (516)
165 4a74_A DNA repair and recombin 45.4 7.8 0.00027 31.1 1.5 28 163-190 12-42 (231)
166 4a4z_A Antiviral helicase SKI2 45.3 8.5 0.00029 39.4 2.1 25 163-189 46-70 (997)
167 1jr3_A DNA polymerase III subu 45.2 6.5 0.00022 34.3 1.1 17 174-190 39-55 (373)
168 1qvr_A CLPB protein; coiled co 44.8 4.4 0.00015 40.6 -0.1 28 163-190 181-208 (854)
169 3c8u_A Fructokinase; YP_612366 44.8 6.2 0.00021 31.8 0.8 16 175-190 24-39 (208)
170 3hws_A ATP-dependent CLP prote 44.7 5.5 0.00019 35.2 0.5 18 173-190 51-68 (363)
171 1yks_A Genome polyprotein [con 44.5 7.7 0.00026 35.5 1.5 21 168-190 5-25 (440)
172 1gku_B Reverse gyrase, TOP-RG; 44.1 8.6 0.00029 39.5 1.9 24 163-188 63-86 (1054)
173 3upu_A ATP-dependent DNA helic 44.0 6.2 0.00021 36.3 0.8 36 150-190 27-62 (459)
174 2d7d_A Uvrabc system protein B 44.0 7.3 0.00025 37.8 1.3 47 140-191 4-50 (661)
175 3iij_A Coilin-interacting nucl 42.7 6.2 0.00021 30.8 0.5 16 175-190 13-28 (180)
176 1ly1_A Polynucleotide kinase; 42.6 6.7 0.00023 30.2 0.7 15 175-189 4-18 (181)
177 1lkx_A Myosin IE heavy chain; 42.6 6.1 0.00021 38.9 0.5 21 170-190 91-111 (697)
178 4a2q_A RIG-I, retinoic acid in 42.2 7.8 0.00027 38.3 1.2 25 164-190 256-280 (797)
179 2whx_A Serine protease/ntpase/ 42.1 9.5 0.00032 36.8 1.8 23 165-189 180-202 (618)
180 2zj8_A DNA helicase, putative 42.0 7.8 0.00027 37.7 1.2 21 168-190 36-56 (720)
181 1qhx_A CPT, protein (chloramph 41.6 7.1 0.00024 30.2 0.7 16 175-190 5-20 (178)
182 2gk6_A Regulator of nonsense t 41.5 7.3 0.00025 37.5 0.8 24 165-190 189-212 (624)
183 3trf_A Shikimate kinase, SK; a 41.4 7.2 0.00025 30.4 0.7 16 175-190 7-22 (185)
184 3tr0_A Guanylate kinase, GMP k 41.4 6 0.0002 31.4 0.2 15 176-190 10-24 (205)
185 4a2w_A RIG-I, retinoic acid in 41.1 7.7 0.00026 39.3 1.0 25 164-190 256-280 (936)
186 1ye8_A Protein THEP1, hypothet 41.1 5.7 0.0002 31.7 0.0 14 177-190 4-17 (178)
187 2qnr_A Septin-2, protein NEDD5 40.7 6.8 0.00023 34.0 0.5 27 167-193 12-41 (301)
188 2qag_C Septin-7; cell cycle, c 40.6 7.2 0.00025 35.8 0.6 28 167-194 25-55 (418)
189 1r6b_X CLPA protein; AAA+, N-t 40.5 7.6 0.00026 38.0 0.8 27 164-190 198-224 (758)
190 1zp6_A Hypothetical protein AT 40.5 6.5 0.00022 30.8 0.3 16 175-190 11-26 (191)
191 2cvh_A DNA repair and recombin 40.3 11 0.00039 29.9 1.7 28 163-190 7-37 (220)
192 1rj9_A FTSY, signal recognitio 40.1 7.4 0.00025 34.0 0.6 16 175-190 104-119 (304)
193 2v26_A Myosin VI; calmodulin-b 40.1 6.9 0.00024 39.0 0.4 21 170-190 137-157 (784)
194 2px0_A Flagellar biosynthesis 40.0 7.5 0.00026 33.7 0.6 16 175-190 107-122 (296)
195 1w9i_A Myosin II heavy chain; 39.8 7.1 0.00024 38.8 0.5 21 170-190 169-189 (770)
196 3lfu_A DNA helicase II; SF1 he 39.8 7.7 0.00026 36.9 0.7 19 173-191 22-40 (647)
197 2dr3_A UPF0273 protein PH0284; 39.7 13 0.00044 30.1 2.0 28 163-190 10-40 (247)
198 1ypw_A Transitional endoplasmi 39.5 7.3 0.00025 38.8 0.5 52 139-190 199-255 (806)
199 3tau_A Guanylate kinase, GMP k 39.5 6.7 0.00023 31.7 0.2 16 175-190 10-25 (208)
200 2v6i_A RNA helicase; membrane, 39.1 10 0.00035 34.5 1.4 16 175-190 4-19 (431)
201 3pxi_A Negative regulator of g 39.1 11 0.00038 36.9 1.8 27 164-190 192-218 (758)
202 3a00_A Guanylate kinase, GMP k 39.0 6.5 0.00022 31.1 0.0 13 178-190 6-18 (186)
203 3b9q_A Chloroplast SRP recepto 38.9 6.9 0.00023 34.2 0.2 16 175-190 102-117 (302)
204 1kk8_A Myosin heavy chain, str 38.6 7.4 0.00025 39.1 0.4 20 170-189 166-185 (837)
205 1w7j_A Myosin VA; motor protei 38.2 7.7 0.00026 38.7 0.4 21 170-190 153-173 (795)
206 1i84_S Smooth muscle myosin he 38.0 8.8 0.0003 40.0 0.9 21 170-190 166-186 (1184)
207 1g8x_A Myosin II heavy chain f 37.9 8.1 0.00028 39.7 0.5 21 170-190 169-189 (1010)
208 1gm5_A RECG; helicase, replica 37.8 9 0.00031 38.1 0.8 21 170-190 386-406 (780)
209 3sop_A Neuronal-specific septi 37.6 8.7 0.0003 32.8 0.6 18 173-190 2-19 (270)
210 2p6r_A Afuhel308 helicase; pro 37.4 7.7 0.00026 37.6 0.3 23 166-190 35-57 (702)
211 3rc3_A ATP-dependent RNA helic 37.3 8.2 0.00028 37.7 0.5 19 168-188 152-170 (677)
212 1kgd_A CASK, peripheral plasma 37.2 7.7 0.00026 30.5 0.2 15 176-190 8-22 (180)
213 2ycu_A Non muscle myosin 2C, a 36.9 8.5 0.00029 39.4 0.5 20 170-189 143-162 (995)
214 3crv_A XPD/RAD3 related DNA he 36.8 9.4 0.00032 36.0 0.8 24 165-190 16-39 (551)
215 3cf2_A TER ATPase, transitiona 36.8 11 0.00037 37.7 1.3 51 140-190 200-255 (806)
216 4db1_A Myosin-7; S1DC, cardiac 36.7 8.4 0.00029 38.4 0.4 21 170-190 168-188 (783)
217 2zts_A Putative uncharacterize 36.5 14 0.00049 29.8 1.8 27 163-189 17-46 (251)
218 1f2t_A RAD50 ABC-ATPase; DNA d 36.4 12 0.0004 28.8 1.2 15 176-190 26-40 (149)
219 3pxi_A Negative regulator of g 36.4 12 0.0004 36.8 1.4 16 175-190 523-538 (758)
220 1lvg_A Guanylate kinase, GMP k 36.3 7.5 0.00026 31.3 0.0 15 176-190 7-21 (198)
221 1uf9_A TT1252 protein; P-loop, 36.2 12 0.00041 29.4 1.3 20 171-190 6-25 (203)
222 2bdt_A BH3686; alpha-beta prot 36.0 8.3 0.00028 30.3 0.2 15 176-190 5-19 (189)
223 2dfs_A Myosin-5A; myosin-V, in 35.9 8.8 0.0003 39.7 0.4 20 170-189 153-172 (1080)
224 2b8t_A Thymidine kinase; deoxy 35.8 6 0.00021 33.1 -0.7 19 174-192 13-31 (223)
225 2ze6_A Isopentenyl transferase 35.8 11 0.00036 31.7 0.9 15 175-189 3-17 (253)
226 2oca_A DAR protein, ATP-depend 35.7 6.7 0.00023 36.1 -0.4 24 165-190 122-145 (510)
227 3kta_A Chromosome segregation 35.7 11 0.00038 29.2 1.0 16 175-190 28-43 (182)
228 1kag_A SKI, shikimate kinase I 35.7 9.3 0.00032 29.3 0.5 16 175-190 6-21 (173)
229 4anj_A Unconventional myosin-V 35.4 10 0.00036 39.0 0.9 21 170-190 141-161 (1052)
230 1kht_A Adenylate kinase; phosp 35.4 9.4 0.00032 29.6 0.5 15 175-189 5-19 (192)
231 2z83_A Helicase/nucleoside tri 35.3 12 0.00042 34.3 1.3 14 176-189 24-37 (459)
232 2orw_A Thymidine kinase; TMTK, 35.1 8.4 0.00029 30.8 0.1 17 175-191 5-21 (184)
233 3lnc_A Guanylate kinase, GMP k 34.9 11 0.00037 30.8 0.8 14 177-190 31-44 (231)
234 1znw_A Guanylate kinase, GMP k 34.9 8.8 0.0003 30.9 0.2 13 178-190 25-37 (207)
235 2va8_A SSO2462, SKI2-type heli 34.9 14 0.00047 35.8 1.7 21 168-190 43-63 (715)
236 3vaa_A Shikimate kinase, SK; s 34.8 11 0.00039 29.9 0.9 16 175-190 27-42 (199)
237 4ddu_A Reverse gyrase; topoiso 34.8 13 0.00045 38.4 1.6 23 164-188 86-108 (1104)
238 2i3b_A HCR-ntpase, human cance 34.7 8.1 0.00028 31.2 -0.0 15 176-190 4-18 (189)
239 2pt7_A CAG-ALFA; ATPase, prote 34.7 8.5 0.00029 34.0 0.1 20 169-190 169-188 (330)
240 1w4r_A Thymidine kinase; type 34.6 14 0.00047 30.4 1.3 23 165-187 12-34 (195)
241 2j41_A Guanylate kinase; GMP, 34.3 9 0.00031 30.3 0.2 16 175-190 8-23 (207)
242 2dhr_A FTSH; AAA+ protein, hex 34.2 8.7 0.0003 36.1 0.1 15 176-190 67-81 (499)
243 2iut_A DNA translocase FTSK; n 34.1 8.6 0.00029 36.9 0.0 17 174-190 215-231 (574)
244 1moz_A ARL1, ADP-ribosylation 34.1 18 0.00063 27.5 2.0 27 164-190 8-35 (183)
245 2rhm_A Putative kinase; P-loop 34.0 11 0.00037 29.5 0.6 15 175-189 7-21 (193)
246 2yvu_A Probable adenylyl-sulfa 33.9 13 0.00045 29.0 1.1 16 174-189 14-29 (186)
247 3l9o_A ATP-dependent RNA helic 33.8 12 0.00042 38.6 1.1 24 164-189 192-215 (1108)
248 1r6b_X CLPA protein; AAA+, N-t 33.7 13 0.00046 36.2 1.3 17 174-190 489-505 (758)
249 2fna_A Conserved hypothetical 33.4 12 0.0004 32.1 0.8 17 174-190 31-47 (357)
250 2vl7_A XPD; helicase, unknown 33.4 11 0.00039 35.3 0.8 23 166-190 21-43 (540)
251 1xx6_A Thymidine kinase; NESG, 33.3 6.1 0.00021 32.1 -1.0 17 175-191 10-26 (191)
252 3kb2_A SPBC2 prophage-derived 33.1 12 0.00041 28.5 0.7 16 175-190 3-18 (173)
253 3e1s_A Exodeoxyribonuclease V, 33.0 12 0.00043 35.6 1.0 25 164-190 197-221 (574)
254 2og2_A Putative signal recogni 33.0 9.7 0.00033 34.2 0.2 16 175-190 159-174 (359)
255 2xzl_A ATP-dependent helicase 32.7 12 0.00042 37.2 0.9 17 175-191 377-393 (802)
256 3uie_A Adenylyl-sulfate kinase 32.6 17 0.0006 28.8 1.7 17 173-189 25-41 (200)
257 3e70_C DPA, signal recognition 32.3 13 0.00045 32.8 0.9 17 174-190 130-146 (328)
258 1y63_A LMAJ004144AAA protein; 32.0 12 0.0004 29.5 0.5 15 175-189 12-26 (184)
259 2b6h_A ADP-ribosylation factor 31.9 21 0.00073 27.9 2.1 28 163-190 19-46 (192)
260 2xgj_A ATP-dependent RNA helic 31.9 13 0.00046 38.0 1.0 23 165-189 95-117 (1010)
261 3nbx_X ATPase RAVA; AAA+ ATPas 31.8 12 0.0004 35.3 0.5 22 167-190 37-58 (500)
262 2yhs_A FTSY, cell division pro 31.7 13 0.00043 35.2 0.7 16 175-190 295-310 (503)
263 2wjy_A Regulator of nonsense t 31.6 13 0.00044 37.1 0.8 17 175-191 373-389 (800)
264 1tev_A UMP-CMP kinase; ploop, 31.4 12 0.00041 29.0 0.5 15 175-189 5-19 (196)
265 1vma_A Cell division protein F 31.2 11 0.00037 33.0 0.2 17 174-190 105-121 (306)
266 2r2a_A Uncharacterized protein 31.2 12 0.00042 30.5 0.5 15 176-190 8-22 (199)
267 1uaa_A REP helicase, protein ( 31.1 11 0.00036 36.4 0.1 19 173-191 15-33 (673)
268 2vli_A Antibiotic resistance p 31.0 14 0.00047 28.6 0.8 15 175-189 7-21 (183)
269 3cm0_A Adenylate kinase; ATP-b 30.9 13 0.00045 28.8 0.6 15 175-189 6-20 (186)
270 1e6c_A Shikimate kinase; phosp 30.9 12 0.00042 28.6 0.4 15 175-189 4-18 (173)
271 3o8b_A HCV NS3 protease/helica 30.6 19 0.00064 35.2 1.7 16 175-190 234-249 (666)
272 1qvr_A CLPB protein; coiled co 30.5 18 0.0006 36.1 1.6 17 174-190 589-605 (854)
273 1z6g_A Guanylate kinase; struc 30.4 11 0.00037 30.8 0.0 13 178-190 28-40 (218)
274 2i1q_A DNA repair and recombin 30.2 22 0.00074 30.7 2.0 28 163-190 85-115 (322)
275 2ce7_A Cell division protein F 30.2 11 0.00037 35.2 0.0 16 175-190 51-66 (476)
276 1nks_A Adenylate kinase; therm 29.9 14 0.00047 28.7 0.6 15 175-189 3-17 (194)
277 2qor_A Guanylate kinase; phosp 29.8 14 0.00049 29.4 0.7 15 176-190 15-29 (204)
278 3t5d_A Septin-7; GTP-binding p 29.4 18 0.00062 30.5 1.3 26 169-194 4-32 (274)
279 2bwj_A Adenylate kinase 5; pho 28.9 15 0.0005 28.8 0.6 15 175-189 14-28 (199)
280 2ius_A DNA translocase FTSK; n 28.8 12 0.00041 35.4 0.0 16 175-190 169-184 (512)
281 4a15_A XPD helicase, ATP-depen 28.8 10 0.00034 36.6 -0.5 23 166-190 17-39 (620)
282 1via_A Shikimate kinase; struc 28.6 14 0.00049 28.5 0.5 14 176-189 7-20 (175)
283 1htw_A HI0065; nucleotide-bind 28.6 13 0.00045 29.0 0.2 16 175-190 35-50 (158)
284 1knq_A Gluconate kinase; ALFA/ 28.4 17 0.00058 27.9 0.9 16 175-190 10-25 (175)
285 2iyv_A Shikimate kinase, SK; t 28.4 15 0.0005 28.6 0.5 14 176-189 5-18 (184)
286 1zd8_A GTP:AMP phosphotransfer 28.4 15 0.00051 29.8 0.6 15 175-189 9-23 (227)
287 3a8t_A Adenylate isopentenyltr 28.3 17 0.00057 32.5 0.9 14 175-188 42-55 (339)
288 2z43_A DNA repair and recombin 28.2 24 0.00082 30.6 1.9 28 163-190 94-124 (324)
289 3auy_A DNA double-strand break 28.2 18 0.00063 32.0 1.2 14 176-189 28-41 (371)
290 3t61_A Gluconokinase; PSI-biol 28.1 15 0.0005 29.2 0.5 16 175-190 20-35 (202)
291 1odf_A YGR205W, hypothetical 3 28.0 15 0.00051 31.7 0.5 18 173-190 31-48 (290)
292 2eyq_A TRCF, transcription-rep 28.0 22 0.00076 36.9 1.9 20 170-189 621-640 (1151)
293 2pt5_A Shikimate kinase, SK; a 27.9 15 0.0005 28.0 0.4 14 176-189 3-16 (168)
294 1c9k_A COBU, adenosylcobinamid 27.7 17 0.00059 29.3 0.8 13 176-188 2-14 (180)
295 1e69_A Chromosome segregation 27.6 17 0.00059 31.5 0.8 14 177-190 28-41 (322)
296 2bbw_A Adenylate kinase 4, AK4 27.6 14 0.00047 30.5 0.2 16 175-190 29-44 (246)
297 3crm_A TRNA delta(2)-isopenten 27.5 17 0.0006 32.1 0.9 15 175-189 7-21 (323)
298 1pzn_A RAD51, DNA repair and r 27.3 28 0.00094 30.8 2.2 28 163-190 118-148 (349)
299 3a4m_A L-seryl-tRNA(SEC) kinas 27.3 17 0.00057 30.5 0.7 15 175-189 6-20 (260)
300 3m6a_A ATP-dependent protease 27.2 14 0.00048 34.9 0.2 16 175-190 110-125 (543)
301 2qen_A Walker-type ATPase; unk 27.0 13 0.00044 31.8 -0.1 17 174-190 32-48 (350)
302 1qf9_A UMP/CMP kinase, protein 27.0 17 0.00057 28.1 0.6 15 175-189 8-22 (194)
303 1ukz_A Uridylate kinase; trans 27.0 16 0.00055 28.9 0.5 15 175-189 17-31 (203)
304 2qmh_A HPR kinase/phosphorylas 26.8 18 0.00062 29.9 0.8 18 173-190 34-51 (205)
305 2ga8_A Hypothetical 39.9 kDa p 26.8 24 0.00081 31.8 1.6 21 170-190 21-41 (359)
306 3asz_A Uridine kinase; cytidin 26.7 15 0.00052 29.2 0.3 15 176-190 9-23 (211)
307 2c95_A Adenylate kinase 1; tra 26.6 17 0.00058 28.3 0.6 15 175-189 11-25 (196)
308 2if2_A Dephospho-COA kinase; a 26.3 17 0.00059 28.7 0.6 15 176-190 4-18 (204)
309 1ak2_A Adenylate kinase isoenz 26.3 17 0.00057 29.8 0.5 15 175-189 18-32 (233)
310 1aky_A Adenylate kinase; ATP:A 26.3 17 0.00057 29.3 0.5 15 175-189 6-20 (220)
311 3foz_A TRNA delta(2)-isopenten 26.2 19 0.00065 31.8 0.9 15 175-189 12-26 (316)
312 1v5w_A DMC1, meiotic recombina 25.9 29 0.001 30.4 2.1 28 163-190 109-139 (343)
313 1a5t_A Delta prime, HOLB; zinc 25.6 19 0.00065 31.3 0.8 27 164-190 14-41 (334)
314 3tif_A Uncharacterized ABC tra 25.4 16 0.00055 30.4 0.2 13 178-190 36-48 (235)
315 1zu4_A FTSY; GTPase, signal re 25.3 16 0.00054 32.1 0.2 16 175-190 107-122 (320)
316 3kl4_A SRP54, signal recogniti 25.1 19 0.00064 33.2 0.6 17 174-190 98-114 (433)
317 3aez_A Pantothenate kinase; tr 25.0 23 0.00079 30.9 1.2 16 175-190 92-107 (312)
318 1tq4_A IIGP1, interferon-induc 24.9 12 0.00041 34.3 -0.7 15 176-190 72-86 (413)
319 3qks_A DNA double-strand break 24.9 24 0.00081 28.5 1.2 15 176-190 26-40 (203)
320 2v3c_C SRP54, signal recogniti 24.8 23 0.00079 32.5 1.2 16 175-190 101-116 (432)
321 1g41_A Heat shock protein HSLU 24.7 18 0.00063 33.4 0.5 17 174-190 51-67 (444)
322 3exa_A TRNA delta(2)-isopenten 24.6 20 0.00068 31.8 0.7 15 175-189 5-19 (322)
323 4eun_A Thermoresistant glucoki 24.6 22 0.00074 28.2 0.9 16 175-190 31-46 (200)
324 2w00_A HSDR, R.ECOR124I; ATP-b 23.7 17 0.00059 37.3 0.1 16 176-191 303-318 (1038)
325 3fb4_A Adenylate kinase; psych 23.7 20 0.00069 28.6 0.5 14 176-189 3-16 (216)
326 2gno_A DNA polymerase III, gam 23.6 23 0.00078 30.7 0.9 27 164-190 9-35 (305)
327 2jaq_A Deoxyguanosine kinase; 23.4 20 0.00069 28.0 0.5 14 176-189 3-16 (205)
328 1pjr_A PCRA; DNA repair, DNA r 23.3 18 0.00061 35.3 0.1 19 173-191 24-42 (724)
329 4g1u_C Hemin import ATP-bindin 23.3 13 0.00046 31.6 -0.7 12 179-190 43-54 (266)
330 2cdn_A Adenylate kinase; phosp 23.2 22 0.00076 28.1 0.7 16 174-189 21-36 (201)
331 1xjc_A MOBB protein homolog; s 23.2 19 0.00064 28.7 0.2 15 176-190 7-21 (169)
332 2ce2_X GTPase HRAS; signaling 23.0 24 0.00083 25.9 0.8 16 175-190 5-20 (166)
333 3dm5_A SRP54, signal recogniti 22.9 23 0.00079 32.7 0.8 18 173-190 100-117 (443)
334 2xau_A PRE-mRNA-splicing facto 22.8 24 0.0008 35.0 0.9 13 176-188 112-124 (773)
335 2pbr_A DTMP kinase, thymidylat 22.7 21 0.00073 27.6 0.5 14 176-189 3-16 (195)
336 2qag_A Septin-2, protein NEDD5 22.7 23 0.0008 31.4 0.8 23 168-190 32-54 (361)
337 1s96_A Guanylate kinase, GMP k 22.6 19 0.00066 29.6 0.2 14 177-190 20-33 (219)
338 3qf7_A RAD50; ABC-ATPase, ATPa 22.6 26 0.0009 31.1 1.1 13 178-190 28-40 (365)
339 2jeo_A Uridine-cytidine kinase 22.6 14 0.00048 30.5 -0.7 15 176-190 28-42 (245)
340 1j8m_F SRP54, signal recogniti 22.3 32 0.0011 29.7 1.6 16 175-190 100-115 (297)
341 2zr9_A Protein RECA, recombina 22.2 33 0.0011 30.3 1.7 28 163-190 47-78 (349)
342 3dl0_A Adenylate kinase; phosp 22.1 22 0.00077 28.3 0.5 14 176-189 3-16 (216)
343 1zak_A Adenylate kinase; ATP:A 22.1 25 0.00087 28.2 0.8 15 175-189 7-21 (222)
344 2ged_A SR-beta, signal recogni 22.0 25 0.00085 27.1 0.7 18 173-190 48-65 (193)
345 2vhj_A Ntpase P4, P4; non- hyd 21.9 27 0.00092 31.1 1.0 16 175-190 125-140 (331)
346 2pcj_A ABC transporter, lipopr 21.8 21 0.00073 29.3 0.3 12 179-190 36-47 (224)
347 2plr_A DTMP kinase, probable t 21.8 23 0.00079 27.8 0.5 15 175-189 6-20 (213)
348 1e4v_A Adenylate kinase; trans 21.8 24 0.00082 28.3 0.6 14 176-189 3-16 (214)
349 3be4_A Adenylate kinase; malar 21.7 24 0.00082 28.4 0.6 15 175-189 7-21 (217)
350 1ksh_A ARF-like protein 2; sma 21.5 32 0.0011 26.3 1.3 20 171-190 16-35 (186)
351 2dyk_A GTP-binding protein; GT 21.4 26 0.0009 25.8 0.7 15 176-190 4-18 (161)
352 1jjv_A Dephospho-COA kinase; P 21.4 24 0.0008 28.0 0.5 15 176-190 5-19 (206)
353 3qkt_A DNA double-strand break 21.1 29 0.001 30.3 1.1 14 177-190 27-40 (339)
354 1zuh_A Shikimate kinase; alpha 21.0 27 0.00091 26.6 0.7 15 175-189 9-23 (168)
355 1cke_A CK, MSSA, protein (cyti 20.9 25 0.00084 28.2 0.5 16 175-190 7-22 (227)
356 1zj6_A ADP-ribosylation factor 20.9 42 0.0014 25.7 1.9 23 168-190 11-33 (187)
357 3d3q_A TRNA delta(2)-isopenten 20.7 29 0.00098 30.9 0.9 15 175-189 9-23 (340)
358 2wv9_A Flavivirin protease NS2 20.7 31 0.0011 33.5 1.2 18 170-189 240-257 (673)
359 1z63_A Helicase of the SNF2/RA 20.7 20 0.00068 32.7 -0.1 20 170-191 55-74 (500)
360 2onk_A Molybdate/tungstate ABC 20.6 23 0.00078 29.6 0.2 15 176-190 27-41 (240)
361 2qt1_A Nicotinamide riboside k 20.5 26 0.0009 27.7 0.6 26 163-190 13-38 (207)
362 1nlf_A Regulatory protein REPA 20.2 31 0.0011 28.9 1.0 16 175-190 32-47 (279)
363 3bs4_A Uncharacterized protein 20.2 26 0.00088 29.9 0.4 27 163-190 8-37 (260)
364 1ltq_A Polynucleotide kinase; 20.1 28 0.00095 29.4 0.7 15 175-189 4-18 (301)
365 2o5v_A DNA replication and rep 20.1 26 0.00088 31.3 0.5 16 175-190 28-43 (359)
366 1ji0_A ABC transporter; ATP bi 20.1 24 0.00081 29.4 0.2 13 178-190 37-49 (240)
367 2vp4_A Deoxynucleoside kinase; 20.1 35 0.0012 27.8 1.3 15 176-190 23-37 (230)
368 1g6h_A High-affinity branched- 20.0 24 0.00082 29.7 0.2 19 170-190 32-50 (257)
369 2yv5_A YJEQ protein; hydrolase 20.0 30 0.001 29.8 0.9 21 168-190 162-182 (302)
No 1
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=100.00 E-value=3.8e-45 Score=335.55 Aligned_cols=167 Identities=22% Similarity=0.298 Sum_probs=146.4
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC----------CCceeeeeceeeCCCCCcchhhcccchhh
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN----------AKSYTFKLDHCLGQDTDQTSVFTIIAQPL 164 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~----------~~~~~f~FD~vf~~~~~q~~vy~~~~~pl 164 (262)
..++|+|+||+||++.+|.. +...++.+.++...+.+... ...+.|+||+||+++++|++||+.+++|+
T Consensus 2 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~pl 81 (350)
T 2vvg_A 2 SSDNIKVIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTFDAVYDQTSCNYGIFQASFKPL 81 (350)
T ss_dssp --CBCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEECC--------------EEEECSEEECTTCCHHHHHHHTTHHH
T ss_pred CCCCeEEEEEeCCCChhhhccCCceEEEEcCCCCEEEEeeccccccccccCCCceEeeCCEEECCCcchhHHHHHHHHHH
Confidence 46799999999999999976 66677887765555544331 25789999999999999999999999999
Q ss_pred HhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccC----ccceEEEEEEEEEE---EEecCC--CCc
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWS----HSGWTGWVSCVVVI---AVDFGC--GSW 235 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~----~~~~~~~vS~~EIy---l~Dll~--~~l 235 (262)
|+.+|+|||+||||||||||||||||+|+.+++|||||++++||..++ ...|.+++||+||| |+|||. .+|
T Consensus 82 v~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~l 161 (350)
T 2vvg_A 82 IDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNNTKL 161 (350)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTCCTTEEEEEEEEEEEEETTEEEETTTTEEEE
T ss_pred HHHHhCCCceeEEeecCCCCCCCEEeecCCccCchHHHHHHHHHHHHHhhccCCcEEEEEEEEEEeCCEEEEcccCCcCc
Confidence 999999999999999999999999999999999999999999999875 35899999999999 999996 568
Q ss_pred eeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 236 RFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 236 ~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
+|+||+.+++||.|++++.|.+.+|++
T Consensus 162 ~i~e~~~~~~~v~gl~~~~v~s~~e~~ 188 (350)
T 2vvg_A 162 PLKEDKTRGIYVDGLSMHRVTTAAELS 188 (350)
T ss_dssp CEEEETTTEEEETTCCCEEESSHHHHH
T ss_pred eeeEcCCCCEEecCCEEEEcCCHHHHH
Confidence 999999999999999999999999974
No 2
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=100.00 E-value=1.8e-44 Score=331.12 Aligned_cols=165 Identities=24% Similarity=0.323 Sum_probs=144.5
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV 174 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ 174 (262)
+.++|+|+||+||++..|.. ++..++.+..+...+.... ..+.|.||+||+++++|++||+.+++|+|+.+|+|||+
T Consensus 2 e~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~--~~~~F~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~G~n~ 79 (349)
T 1t5c_A 2 EEGAVAVCVRVRPLNSREESLGETAQVYWKTDNNVIYQVD--GSKSFNFDRVFHGNETTKNVYEEIAAPIIDSAIQGYNG 79 (349)
T ss_dssp -CCCEEEEEEECCCSCSSCTTTTCCCCCEEEETTEEEETT--SSCEEECSCEECTTSCHHHHHHHTTHHHHHHHHTTCCE
T ss_pred CCCCEEEEEECCCCChhhhccCCCcEEEEeCCCCeEEECC--CCeEEECCEEECCCCCHHHHHHHHHHHHHHHHHcCCcc
Confidence 46899999999999999976 4444444433333343322 46799999999999999999999999999999999999
Q ss_pred eEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC-----CCceeeecCCC
Q psy17370 175 CLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC-----GSWRFESKPSH 243 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~-----~~l~i~ed~~~ 243 (262)
||||||||||||||||+|..+++|||||++++||..+++ .+|.|+|||+||| |+|||. .+|.|+||+++
T Consensus 80 tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i~ed~~~ 159 (349)
T 1t5c_A 80 TIFAYGQTASGKTYTMMGSEDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQKMKPLIIREDVNR 159 (349)
T ss_dssp EEEEEESTTSSHHHHHTBCSSSBCHHHHHHHHHHHHGGGCTTEEEEEEEEEEEEETTEEEESSSSSCTTCCEEEEETTTT
T ss_pred ceeeecCCCCCCCeEEecCCCCCchHHHHHHHHHHHHHhCcCCcEEEEEEEEEEeCCEEEEccCCCCCCCCceEEECCCC
Confidence 999999999999999999999999999999999998864 5899999999999 999994 46899999999
Q ss_pred cEEEcCceEEecCChhhhC
Q psy17370 244 EIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 244 ~v~v~gl~~~~V~s~~e~l 262 (262)
++||.|++++.|.+.+|++
T Consensus 160 ~~~v~gl~~~~v~s~~e~~ 178 (349)
T 1t5c_A 160 NVYVADLTEEVVYTSEMAL 178 (349)
T ss_dssp EEEETTCCCEECSSHHHHH
T ss_pred CEEecCCEEEEeCCHHHHH
Confidence 9999999999999999974
No 3
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=100.00 E-value=1.7e-44 Score=332.10 Aligned_cols=167 Identities=21% Similarity=0.245 Sum_probs=144.4
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC--------------------CCceeeeeceeeCCCCCcc
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN--------------------AKSYTFKLDHCLGQDTDQT 154 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~--------------------~~~~~f~FD~vf~~~~~q~ 154 (262)
..++|+|+||+||++.+|.. +...++.+.++...+..+.. ...+.|.||+||+++++|+
T Consensus 8 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~ 87 (355)
T 3lre_A 8 LCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVFDETSTQS 87 (355)
T ss_dssp ----CEEEEEECCCCHHHHHTTCCBSEEECSSSEEEEC------------------------CCEEEECSEEECTTCCHH
T ss_pred ccCCCEEEEEeCcCChHHHhcCCceEEEecCCceEEecCCCCcceeecccccccccchhccCCCceEEeceEECCCCChH
Confidence 37899999999999999977 66777777665554433221 1456899999999999999
Q ss_pred hhhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---E
Q psy17370 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---A 227 (262)
Q Consensus 155 ~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l 227 (262)
+||+.+++|+|+.+|+|||+||||||||||||||||+|+..++|||||++++||..+++ ..+.++|||+||| |
T Consensus 88 ~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lf~~i~~~~~~~~~~v~vS~~EIYnE~i 167 (355)
T 3lre_A 88 EVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQI 167 (355)
T ss_dssp HHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEEETTEE
T ss_pred HHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCeeehhhhHHHHhhhhhccCceEEEEEEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999999999987753 4789999999999 9
Q ss_pred EecCC--CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 228 VDFGC--GSWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 228 ~Dll~--~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
+|||. .+|.++||+.+++||.|++++.|.+.+|++
T Consensus 168 ~DLL~~~~~l~ire~~~~~~~v~gl~~~~v~s~~e~~ 204 (355)
T 3lre_A 168 RDLLVNSGPLAVREDTQKGVVVHGLTLHQPKSSEEIL 204 (355)
T ss_dssp EESSSCCCCBEEEECTTSCEEEETCCCBCCCSHHHHH
T ss_pred EECcCCCCCceeEEcCCCCEEeeeeeEEecCCHHHHH
Confidence 99984 679999999999999999999999999974
No 4
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=100.00 E-value=2e-44 Score=339.81 Aligned_cols=167 Identities=25% Similarity=0.350 Sum_probs=146.2
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC----------------CCceeeeeceeeCC-------CC
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN----------------AKSYTFKLDHCLGQ-------DT 151 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~----------------~~~~~f~FD~vf~~-------~~ 151 (262)
..++|+|+|||||++.+|.. +..+++.+++....+.+... ...+.|+||+||++ .+
T Consensus 36 ~~~~vrV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~F~FD~vF~~~~~~~~~~a 115 (443)
T 2owm_A 36 PGANVRVVVRVRAFLPRELERNAECIVEMDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYA 115 (443)
T ss_dssp CCEECEEEEEEECCCHHHHHTTCCCCEEECSSSCEEEECCCC---------------CCCEEEECSEEEEESCTTSTTCC
T ss_pred CCCCeEEEEEeCCCChHHhhcCCceEEEEcCCCccEEEecCCCcccccccccccccccCCceEecCeEeCCCCcCCccCC
Confidence 46799999999999999976 66778888765443332111 14689999999965 48
Q ss_pred CcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-------cceEEEEEEEE
Q psy17370 152 DQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-------SGWTGWVSCVV 224 (262)
Q Consensus 152 ~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-------~~~~~~vS~~E 224 (262)
+|++||+.+++|||+.+|+|||+||||||||||||||||+|..+++|||||++++||..++. .+|.|+|||+|
T Consensus 116 sQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GIipr~~~~lF~~i~~~~~~~~~~~~~V~vS~lE 195 (443)
T 2owm_A 116 TQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFE 195 (443)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCHHHHHHHHHHHHHHHTTTTSTTCEEEEEEEEEE
T ss_pred CHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCchHHHHHHHHHHHHHhhhcccCCceEEEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999987753 47899999999
Q ss_pred EE---EEecCCC--------CceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 225 VI---AVDFGCG--------SWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 225 Iy---l~Dll~~--------~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
|| |+|||.. .|+|+||+.+++||.||+++.|.+.+|++
T Consensus 196 IYnE~i~DLL~~~~~~~~~~~l~ire~~~~g~~V~gl~e~~V~s~~e~~ 244 (443)
T 2owm_A 196 VYNEHVRDLLAPVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEII 244 (443)
T ss_dssp EETTEEEETTSCCCSSCCCCCCEEEEETTTEEEEETCCCEECCSHHHHH
T ss_pred EECCEeeEccCccccCCcccccceeECCCCCEeccCCEEEEcCCHHHHH
Confidence 99 9999953 49999999999999999999999999974
No 5
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=3.8e-44 Score=332.17 Aligned_cols=169 Identities=20% Similarity=0.236 Sum_probs=133.8
Q ss_pred CCCCCCeEEEEEeCCCCccccC-CCcceEEEcCCc-eEEEEcC-CCCceeeeeceeeCCCCCcchhhcccchhhHhhhhC
Q psy17370 94 NLECSRMTVAVRIRPLLVKELH-MDVSSIEISPDR-REMKVND-NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFN 170 (262)
Q Consensus 94 ~~~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~-~~i~~~~-~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~ 170 (262)
....++|+|+||+||++..|.. +...++...++. ..+.... ....+.|+||+||+++++|++||+.+++|+|+.+|+
T Consensus 17 ~~~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~~i~~~~~~~~~~~f~FD~Vf~~~~tQ~~Vy~~~~~plv~~~l~ 96 (388)
T 3bfn_A 17 QGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLKYQFDAFYGERSTQQDIYAGSVQPILRHLLE 96 (388)
T ss_dssp SSCCCCCEEEEEECCCC-----------------------------CEEEEECSEEECTTCCHHHHHHHHTGGGHHHHTT
T ss_pred cCCCCCEEEEEECCCCChhhhccCCCceEEecCCCeEEEecCCCCCCeeEEEcceEecCCCCHhHHHHHHHHHHHHHhhc
Confidence 3457899999999999999876 334444433322 2222221 225789999999999999999999999999999999
Q ss_pred CCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-------cceEEEEEEEEEE---EEecCC---CCcee
Q psy17370 171 GYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-------SGWTGWVSCVVVI---AVDFGC---GSWRF 237 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-------~~~~~~vS~~EIy---l~Dll~---~~l~i 237 (262)
|||+||||||||||||||||+|+.+++|||||++++||..+.+ ..|.|+|||+||| |+|||. .+|.|
T Consensus 97 G~N~tifAYGqTGSGKTyTM~G~~~~~Giipra~~~lF~~i~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~~~~~~l~i 176 (388)
T 3bfn_A 97 GQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLLDPASGDLVI 176 (388)
T ss_dssp TCCEEEEEESCTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHTSTTCSEEEEEEEEEEEEETTEEEESSSCSSCBCCC
T ss_pred CceeeEeeecCCCCCCCeEeecCccccchhHHHHHHHHHHHHHhhccCCCceEEEEEEEEEEECCeeeehhccCCCCceE
Confidence 9999999999999999999999999999999999999987753 3688999999999 999985 57999
Q ss_pred eecCCCcEEEcCceEEecCChhhhC
Q psy17370 238 ESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 238 ~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
+||+.+++||.|++++.|.+.+|++
T Consensus 177 red~~~~v~v~gl~~~~V~s~~e~~ 201 (388)
T 3bfn_A 177 REDCRGNILIPGLSQKPISSFADFE 201 (388)
T ss_dssp EECTTSCEECTTCCCEECCSHHHHH
T ss_pred EEcCCCCEEeccceEEEeCCHHHHH
Confidence 9999999999999999999999974
No 6
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=100.00 E-value=5e-44 Score=327.95 Aligned_cols=164 Identities=29% Similarity=0.388 Sum_probs=147.4
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV 174 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ 174 (262)
++++|+|+||+||++.+|.. +...++.+.++...+... ..+.|.||+||+++++|++||+.+++|+|+.+|+|||+
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~---~~~~f~FD~Vf~~~~~Q~~vy~~~~~plv~~~l~G~n~ 85 (344)
T 4a14_A 9 EEAPVRVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLG---RDRHFGFHVVLAEDAGQEAVYQACVQPLLEAFFEGFNA 85 (344)
T ss_dssp CCCCCEEEEEECCCCHHHHHTTCCBCEEEEGGGTEEEET---TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred cccceEEEEEecccchHHHhccCeeEEEEcCCCceEEec---ccceEEEEEEEecCcchhHHHHHHHHHHHHHHHhhcCe
Confidence 57899999999999999876 666777777766666553 47899999999999999999999999999999999999
Q ss_pred eEeeeeccCCCCceecCCCC------CCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC-----CCcee
Q psy17370 175 CLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC-----GSWRF 237 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~-----~~l~i 237 (262)
||||||||||||||||+|.. +++|||||++++||..+++ .+|.|+|||+||| |+|||. .+|+|
T Consensus 86 tifAYGqTGSGKTyTm~G~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~l~i 165 (344)
T 4a14_A 86 TVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGTASRDIQL 165 (344)
T ss_dssp EEEEESSTTSSHHHHHCC--------CCCCHHHHHHHHHHHHHHHCTTSEEEEEEEEEEEETTEEEETTSSCCCGGGCEE
T ss_pred eEEEecccCCCceEeecccchhhhhhcccCCchHHHHHHHHhcccccceeeEEEEehhhhhHHHHHHHHHhcccccccee
Confidence 99999999999999999984 7899999999999998864 4899999999999 999994 56899
Q ss_pred eecCCCcEEEcCceEEecCChhhhC
Q psy17370 238 ESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 238 ~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
+||+++++||.|++++.|.+.+|++
T Consensus 166 ~e~~~~~~~v~gl~~~~v~s~~e~~ 190 (344)
T 4a14_A 166 REDERGNVVLCGVKEVDVEGLDEVL 190 (344)
T ss_dssp EECTTSCEEEESCCCEECCSHHHHH
T ss_pred eeccCCCEEEEeeeeccccCHHHHH
Confidence 9999999999999999999999974
No 7
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=100.00 E-value=6.7e-44 Score=324.58 Aligned_cols=162 Identities=21% Similarity=0.214 Sum_probs=144.9
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV 174 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ 174 (262)
.+++|+|+||+||++..|.. ++..++.+.++...+. ..+.|.||+||+++++|++||+.+++|+|+.+|+|||+
T Consensus 5 ~~~~i~V~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~-----~~~~f~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~n~ 79 (325)
T 1bg2_A 5 AECNIKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVI-----ASKPYAFDRVFQSSTSQEQVYNDCAKKIVKDVLEGYNG 79 (325)
T ss_dssp SSCEEEEEEEECCCCHHHHHHTCCBCCEEETTTEEEE-----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTCCE
T ss_pred CCCCEEEEEEcCCCChhHhccCCeeEEEECCCCeEEE-----CCEEEECCeEeCCCCCHHHHHHHHhhhhHHHHhCCCeE
Confidence 47899999999999999977 6666777766555433 46789999999999999999999999999999999999
Q ss_pred eEeeeeccCCCCceecCCCC---CCCchHhhhhhccccccC----ccceEEEEEEEEEE---EEecCC---CCceeeecC
Q psy17370 175 CLFAYGQTGSGKSYRGDSTL---NSSVLRPRVLFYPGFSWS----HSGWTGWVSCVVVI---AVDFGC---GSWRFESKP 241 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~G~~---~~~Giipr~~~~lf~~~~----~~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~ 241 (262)
||||||||||||||||+|.. ...|||||++++||..+. ..+|.|+|||+||| |+|||. .+|+++||+
T Consensus 80 tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~~l~i~e~~ 159 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDK 159 (325)
T ss_dssp EEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHHCSSEEEEEEEEEEEEETTEEEESSCTTCCSBCEEECT
T ss_pred EEEEECCCCCCCceEecccCCCcccCccHHHHHHHHHHHHHhccCCceEEEEEEEEEEecCeeeecccCCCCCceEEECC
Confidence 99999999999999999975 456999999999998774 35899999999999 999984 679999999
Q ss_pred CCcEEEcCceEEecCChhhhC
Q psy17370 242 SHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 242 ~~~v~v~gl~~~~V~s~~e~l 262 (262)
++++||.|++++.|.+.+|++
T Consensus 160 ~~~~~v~gl~~~~v~s~~e~~ 180 (325)
T 1bg2_A 160 NRVPYVKGCTERFVCSPDEVM 180 (325)
T ss_dssp TSCEEETTCCCEEECSHHHHH
T ss_pred CCCEEecCceEEeCCCHHHHH
Confidence 999999999999999999974
No 8
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=100.00 E-value=8e-44 Score=328.79 Aligned_cols=167 Identities=20% Similarity=0.281 Sum_probs=147.0
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC-----CCceeeeeceeeCCCCCcchhhcccchhhHhhhh
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN-----AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAF 169 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~-----~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l 169 (262)
..++|+|+||+||++..|.. +...++.+..+...+.+... ...+.|+||+||+++++|++||+.+++|+|+.+|
T Consensus 19 ~~~~irV~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~v~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 98 (372)
T 3b6u_A 19 SSESVRVVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTFDAVYDWNAKQFELYDETFRPLVDSVL 98 (372)
T ss_dssp --CBCEEEEEECCCCHHHHHTTCCBCEEEETTTTEEEECCTTCTTTCCCEEEECSEEECTTCCHHHHHHHTHHHHHHHHH
T ss_pred CCCCeEEEEEcCCCChhhhccCCceEEEEeCCCCEEEEECCCCCCCCCceEEEcCeEeCCcCchHHHHHHHHHHHHHHHh
Confidence 47899999999999999876 66677888766555555332 2568999999999999999999999999999999
Q ss_pred CCCceeEeeeeccCCCCceecCCCC---CCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC----CCce
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRGDSTL---NSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC----GSWR 236 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm~G~~---~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~----~~l~ 236 (262)
+|||+||||||||||||||||+|.. +++|||||++++||..++. .+|.|+|||+||| |+|||. ..|+
T Consensus 99 ~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~ 178 (372)
T 3b6u_A 99 QGFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQTKRLE 178 (372)
T ss_dssp TTCCEEEEEEESTTSSHHHHHTBCTTSGGGBCHHHHHHHHHHHHHHTCSSCEEEEEEEEEEEETTEEEETTSSCTTCCBC
T ss_pred CCCeeeEEeecCCCCCCCEeEecCCCCcccCCcHHHHHHHHHHHhhhccCCceEEEEEEEEEeCCEEEECCCCCCCCCce
Confidence 9999999999999999999999975 5679999999999998753 5899999999999 999995 4689
Q ss_pred eeecCCCcEEEcCceEEecCChhhhC
Q psy17370 237 FESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 237 i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
|+||+++++||.|++++.|.+.+|++
T Consensus 179 i~e~~~~~v~v~gl~~~~v~s~~e~~ 204 (372)
T 3b6u_A 179 LKERPDTGVYVKDLSSFVTKSVKEIE 204 (372)
T ss_dssp EEEETTTEEEETTCCCEECCSHHHHH
T ss_pred EEECCCCcEecCCCEEEEecCHHHHH
Confidence 99999999999999999999999974
No 9
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=100.00 E-value=1.2e-43 Score=326.33 Aligned_cols=165 Identities=24% Similarity=0.328 Sum_probs=147.8
Q ss_pred CCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCcee
Q psy17370 97 CSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVC 175 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ 175 (262)
.++|+|+||+||++..|.. +..++|.+.++... .+......+.|+||+||+++++|++||+.+++|+|+.+|+|||+|
T Consensus 5 ~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~-~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~n~t 83 (355)
T 1goj_A 5 ANSIKVVARFRPQNRVEIESGGQPIVTFQGPDTC-TVDSKEAQGSFTFDRVFDMSCKQSDIFDFSIKPTVDDILNGYNGT 83 (355)
T ss_dssp SCBCEEEEEECCCCHHHHTTTCCBCEEECSTTEE-EECSTTCCEEEECSEEECTTCCHHHHHHHHTHHHHHHHTTTCCEE
T ss_pred CCCeEEEEECCCCChHHhhcCCceEEEEcCCCeE-EEccCCCccEEeeCeEECCCCccHHHHHHHHHHHHHHHhCCCcce
Confidence 5799999999999999987 66778888776653 344445678999999999999999999999999999999999999
Q ss_pred EeeeeccCCCCceecCCCC----CCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC---CCceeeecC
Q psy17370 176 LFAYGQTGSGKSYRGDSTL----NSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC---GSWRFESKP 241 (262)
Q Consensus 176 ifaYG~tgSGKTyTm~G~~----~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~---~~l~i~ed~ 241 (262)
|||||||||||||||+|.. +++|||||++++||..+.. .+|.|+|||+||| |+|||. .+|+|+||+
T Consensus 84 ifAYGqTGSGKTyTm~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e~~ 163 (355)
T 1goj_A 84 VFAYGQTGAGKSYTMMGTSIDDPDGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEK 163 (355)
T ss_dssp EEEECSTTSSHHHHHTBSCTTSTTTBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSTTCCSCCEEEET
T ss_pred EEEECCCCCCcceEeecCCCCCcccCCchHHHHHHHHHHHHhcccCceEEEEEEEEEEECCEEEEcccCccCCceeEEcC
Confidence 9999999999999999963 6789999999999987753 4799999999999 999985 579999999
Q ss_pred CCcEEEcCceEEecCChhhhC
Q psy17370 242 SHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 242 ~~~v~v~gl~~~~V~s~~e~l 262 (262)
.+++||.|++++.|.+.+|++
T Consensus 164 ~~g~~v~gl~~~~v~s~~e~~ 184 (355)
T 1goj_A 164 NRGVYVKGLLEIYVSSVQEVY 184 (355)
T ss_dssp TTEEEETTCCCEECCSHHHHH
T ss_pred CCCEeecCCEEEeCCCHHHHH
Confidence 999999999999999999974
No 10
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=100.00 E-value=5.7e-44 Score=329.78 Aligned_cols=167 Identities=25% Similarity=0.366 Sum_probs=147.0
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCCC--CceeeeeceeeCCC--------CCcchhhcccchhh
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDNA--KSYTFKLDHCLGQD--------TDQTSVFTIIAQPL 164 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~~--~~~~f~FD~vf~~~--------~~q~~vy~~~~~pl 164 (262)
..++|+|+||+||++.+|.. +..+++.+.++...+..+... ..+.|+||+||+++ ++|++||+.+++|+
T Consensus 2 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~i~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~pl 81 (366)
T 2zfi_A 2 AGASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEM 81 (366)
T ss_dssp --CCEEEEEEECCCCHHHHHTTCCBCEEEETTEEEECCTTCTTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHH
T ss_pred CCCCcEEEEECCCCChhhccCCCCeEEEECCCcEEEeccCCCCCCceEEecceEeecCccccccccCcHHHHHHHHHHHH
Confidence 35689999999999999976 667788888776655444322 57899999999887 89999999999999
Q ss_pred HhhhhCCCceeEeeeeccCCCCceecCCCC--CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC--
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRGDSTL--NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC-- 232 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm~G~~--~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~-- 232 (262)
|+.+|+|||+||||||||||||||||+|.. .++|||||++++||..+++ ..|.|+|||+||| |+|||.
T Consensus 82 v~~~l~G~N~tifAYGqTGSGKTyTm~G~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~ 161 (366)
T 2zfi_A 82 LQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPK 161 (366)
T ss_dssp HHHHHTTCCEEEEEECSTTSSHHHHHTBCSGGGCBCHHHHHHHHHHHHHHTCCCTTEEEEEEEEEEEEETTEEEETTCTT
T ss_pred HHHHhcCCeeEEEEeCCCCCCCceEeeCCCccCCCccHHHHHHHHHHHHhhcccCCeeEEEEEEEEEeeCCeEEEccccc
Confidence 999999999999999999999999999985 6789999999999998753 3789999999999 999995
Q ss_pred --CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 233 --GSWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 --~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
.+|+|+||+.+++||.|++++.|.+.+|++
T Consensus 162 ~~~~l~ire~~~~g~~v~gl~~~~V~s~~e~~ 193 (366)
T 2zfi_A 162 NKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQ 193 (366)
T ss_dssp TCSCBCEEEETTTEEEETTCCCEECCSHHHHH
T ss_pred cCCCceEEEcCCCCEEEeCCEEEEECCHHHHH
Confidence 469999999999999999999999999974
No 11
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.4e-43 Score=321.49 Aligned_cols=165 Identities=22% Similarity=0.361 Sum_probs=140.5
Q ss_pred CCCeEEEEEeCCCCccccC--CCcceEEEcC-CceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCc
Q psy17370 97 CSRMTVAVRIRPLLVKELH--MDVSSIEISP-DRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYN 173 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~--~~~~~i~~~~-~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n 173 (262)
+++|+|+||+||++..|.. ....++.++. +...+........+.|.||+||+++++|++||+.+ .|+|+.+|+|||
T Consensus 3 ~~~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~n 81 (330)
T 2h58_A 3 KGNIRVIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQEV-QALVTSCIDGFN 81 (330)
T ss_dssp --CEEEEEEECCCCGGGCSSGGGSBCEEECSSCTTEEEEEETTEEEEEECSEEECTTCCHHHHHTTT-HHHHHHHHTTCC
T ss_pred CCCEEEEEEcCCCChhhcccCCCccEEEEeCCCCcEEEEcCCCCeeEEecCeEeCCCCCcHhHHHHH-HHHHHHHhCCCE
Confidence 5799999999999999875 2334566654 33444444445678999999999999999999984 899999999999
Q ss_pred eeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC----CCceee--ec
Q psy17370 174 VCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC----GSWRFE--SK 240 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~----~~l~i~--ed 240 (262)
+||||||||||||||||+|+.+++|||||++++||..+++ .+|.|+|||+||| |+|||. .++.|+ +|
T Consensus 82 ~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~l~i~~~~~ 161 (330)
T 2h58_A 82 VCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKEPQEKLEIRLCPD 161 (330)
T ss_dssp EEEEEESSTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHTSCTTEEEEEEEEEEEEETTEEEETTSCSSCCCCCCEECTT
T ss_pred EEEEeECCCCCCCcEEEecCCCCCcHHHHHHHHHHHhhhcccCCceEEEEEEEEEEECCChhhcccccccccceEEEeec
Confidence 9999999999999999999999999999999999998864 3799999999999 999995 235555 57
Q ss_pred CCCcEEEcCceEEecCChhhhC
Q psy17370 241 PSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 241 ~~~~v~v~gl~~~~V~s~~e~l 262 (262)
..+++||.|++++.|.+.+|++
T Consensus 162 ~~~~~~v~gl~~~~v~s~~e~~ 183 (330)
T 2h58_A 162 GSGQLYVPGLTEFQVQSVDDIN 183 (330)
T ss_dssp SSCCEECTTCCCEEECSHHHHH
T ss_pred CCCCEecCCCEEEEeCCHHHHH
Confidence 7899999999999999999974
No 12
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=100.00 E-value=1.8e-43 Score=325.68 Aligned_cols=167 Identities=26% Similarity=0.385 Sum_probs=144.0
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcC-----CCCceeeeeceeeCCCCCcchhhcccchhhHhhhh
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVND-----NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAF 169 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~-----~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l 169 (262)
..++|+|+||+||++..|.. +...++.+.+....+.+.. ....+.|+||+||+++++|++||+.+++|+|+.+|
T Consensus 6 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l 85 (359)
T 1x88_A 6 KGKNIQVVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQIDVYRSVVCPILDEVI 85 (359)
T ss_dssp ---CCEEEEEECCCCHHHHHTTCCCCEEEETTTTEEEEEEEEETTEEEEEEEECSEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEEeCCCChhhhhcCCceEEEEcCCCcEEEEeCCCccCCcCceEEeceEEEeccCchhHHHHHHHHHhHHHHh
Confidence 47899999999999999876 6667788877655544322 12568999999999999999999999999999999
Q ss_pred CCCceeEeeeeccCCCCceecCCCCC-----------CCchHhhhhhccccccCc--cceEEEEEEEEEE---EEecCC-
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRGDSTLN-----------SSVLRPRVLFYPGFSWSH--SGWTGWVSCVVVI---AVDFGC- 232 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm~G~~~-----------~~Giipr~~~~lf~~~~~--~~~~~~vS~~EIy---l~Dll~- 232 (262)
+|||+||||||||||||||||+|... .+|||||++++||..+.+ .+|.|+|||+||| |+|||.
T Consensus 86 ~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~~ 165 (359)
T 1x88_A 86 MGYNCTIFAYGQTGTGKTFTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNP 165 (359)
T ss_dssp TTCEEEEEEEECTTSSHHHHHTBCCCGGGCSCGGGCTTBCHHHHHHHHHHHHTSSSSEEEEEEEEEEEEETTEEEETTCT
T ss_pred CCCceEEEEeCCCCCCCceEEeccCCccccccccccccCCchHHHHHHHHHHHhccCceEEEEEEEEEEeCceeeehhcc
Confidence 99999999999999999999999763 369999999999998875 4788999999999 999995
Q ss_pred -----CCceeeecCC--CcEEEcCceEEecCChhhhC
Q psy17370 233 -----GSWRFESKPS--HEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 -----~~l~i~ed~~--~~v~v~gl~~~~V~s~~e~l 262 (262)
..|++++|+. +++||.|++++.|.+.+|+|
T Consensus 166 ~~~~~~~l~i~~~~~~~~~v~v~gl~~~~v~s~~e~~ 202 (359)
T 1x88_A 166 SSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVY 202 (359)
T ss_dssp TSCTTCCBEEEEETTEEEEEEEETCCCEEECSGGGHH
T ss_pred cccccccceEEeccCCCCCEEEcCCEEEEcCCHHHHH
Confidence 3589999974 79999999999999999975
No 13
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=100.00 E-value=1.6e-43 Score=327.96 Aligned_cols=168 Identities=22% Similarity=0.254 Sum_probs=142.3
Q ss_pred CCCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEE-cCCC-------CceeeeeceeeCCCCCcchhhcccchhhH
Q psy17370 95 LECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKV-NDNA-------KSYTFKLDHCLGQDTDQTSVFTIIAQPLL 165 (262)
Q Consensus 95 ~~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~-~~~~-------~~~~f~FD~vf~~~~~q~~vy~~~~~plv 165 (262)
.++++|+|+||+||++..|.. +...+|.+.++...+.. +... ..+.|+||+||+++++|++||+.+++|||
T Consensus 48 ~~~~~I~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~sQ~~Vy~~~~~plv 127 (387)
T 2heh_A 48 IEEHRICVCVRKRPLNKQELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLV 127 (387)
T ss_dssp CCCCSEEEEEEECCCCHHHHHTTCCBCEECCBSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHH
T ss_pred CCCCCeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCCccccccccccccEEeeeEEEecCCCceeehhhhHHHHH
Confidence 347899999999999999876 55566777655443322 2111 35789999999999999999999999999
Q ss_pred hhhhCCCceeEeeeeccCCCCceecCCCC------CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecC
Q psy17370 166 DAAFNGYNVCLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFG 231 (262)
Q Consensus 166 ~~~l~G~n~~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll 231 (262)
+.+|+|||+||||||||||||||||+|+. .++|||||++++||..++. ..|.|+|||+||| |+|||
T Consensus 128 ~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipr~~~~lF~~~~~~~~~~~~~~V~vS~~EIYnE~v~DLL 207 (387)
T 2heh_A 128 QTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLL 207 (387)
T ss_dssp HHHHTTCEEEEEEESCTTSSHHHHHC-----------CCHHHHHHHHHHHHHTSHHHHTTTCEEEEEEEEEETTEEEETT
T ss_pred HHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCceehhhHHHHHHHhhcccccCceEEEEEEEEEecCCeEEECC
Confidence 99999999999999999999999999963 5799999999999988864 4799999999999 99999
Q ss_pred C--CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 232 C--GSWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 232 ~--~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
. .+|+|+||+++++||.|++++.|.+.+|++
T Consensus 208 ~~~~~l~i~ed~~~~v~v~gl~~~~V~s~~e~~ 240 (387)
T 2heh_A 208 NKKAKLRVLEDGKQQVQVVGLQEHLVNSADDVI 240 (387)
T ss_dssp TTTEECEEEECTTCCEEEETCCCEEESSHHHHH
T ss_pred CCCccceEEEcCCCCEEecCCEEEEeCCHHHHH
Confidence 6 468999999999999999999999999974
No 14
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=100.00 E-value=3.5e-43 Score=324.37 Aligned_cols=164 Identities=24% Similarity=0.310 Sum_probs=142.6
Q ss_pred CCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEc-CCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCce
Q psy17370 97 CSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVN-DNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV 174 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~-~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~ 174 (262)
+++|+|+||+||++..|.. +...++.. .+...+..+ .....+.|.||+||+++++|++||+. +.|+|+.+|+|||+
T Consensus 4 ~~~i~V~vRvRP~~~~E~~~~~~~~~~~-~~~~~v~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~-~~~lv~~~l~G~n~ 81 (369)
T 3cob_A 4 KGKIRVYCRLRPLCEKEIIAKERNAIRS-VDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFED-TKYLVQSAVDGYNV 81 (369)
T ss_dssp CCBCEEEEEECCCCHHHHHTTCCBCEEE-CSSSEEEEECTTSCEEEEECSEEECTTCCHHHHHHT-TTHHHHHHHTTCEE
T ss_pred CCCeEEEEECCCCChhhccCCCcEEEEc-CCcEEEEecCCCCCceEEecCEEECCCCCcceehhh-hhhhhHhhhcCCce
Confidence 6799999999999999866 33333333 344444443 33366899999999999999999999 68999999999999
Q ss_pred eEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC------CCceeeecC
Q psy17370 175 CLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC------GSWRFESKP 241 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~------~~l~i~ed~ 241 (262)
||||||||||||||||+|+..++|||||++++||..+.. ..|.+++||+||| |+|||. ..|.|++|+
T Consensus 82 tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~l~i~e~~ 161 (369)
T 3cob_A 82 CIFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDS 161 (369)
T ss_dssp EEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHTTTTEEEEEEEEEEEECSSCEEESSCCSSSCCCCCEEEECT
T ss_pred EEEEECCCCCCCeEeecCCCCCCchhHHHHHHHHHHHHhhccCceeEEEEEEEEEeCceeeecCCCcccCCcceEEEECC
Confidence 999999999999999999999999999999999998764 4799999999999 999995 468999999
Q ss_pred CCcEEEcCceEEecCChhhhC
Q psy17370 242 SHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 242 ~~~v~v~gl~~~~V~s~~e~l 262 (262)
++++||.|++++.|.+.+|++
T Consensus 162 ~~~~~v~gl~~~~v~s~~e~~ 182 (369)
T 3cob_A 162 KGMVSVENVTVVSISTYEELK 182 (369)
T ss_dssp TSCEEEETCCCEEECSHHHHH
T ss_pred CCCEEccCCEEEEeCCHHHHH
Confidence 999999999999999999974
No 15
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=100.00 E-value=5.1e-43 Score=323.01 Aligned_cols=163 Identities=18% Similarity=0.210 Sum_probs=144.1
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCC--ceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCC
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPD--RREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGY 172 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~--~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~ 172 (262)
.+++|+|+||+||++..|.. +...++.+.++ ...+.. ..+.|+||+||+++++|++||+.+++|+|+.+|+||
T Consensus 9 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~i~~----~~~~f~FD~Vf~~~~~Q~~Vy~~~~~plv~~~l~G~ 84 (365)
T 2y65_A 9 AEDSIKVVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISI----AGKVYLFDKVFKPNASQEKVYNEAAKSIVTDVLAGY 84 (365)
T ss_dssp CEEECEEEEEECCCCHHHHHTTCCBCEECCSSSTTCEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHTTC
T ss_pred CCCCeEEEEEcCcCChhHhccCCceEEEeCCCCCCcEEEE----CCEEEeCceEecCCCCHHHHHHHhhhhHHHHHhCCC
Confidence 46799999999999999876 55566666553 334443 468999999999999999999999999999999999
Q ss_pred ceeEeeeeccCCCCceecCCCC---CCCchHhhhhhccccccCc----cceEEEEEEEEEE---EEecCC---CCceeee
Q psy17370 173 NVCLFAYGQTGSGKSYRGDSTL---NSSVLRPRVLFYPGFSWSH----SGWTGWVSCVVVI---AVDFGC---GSWRFES 239 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~G~~---~~~Giipr~~~~lf~~~~~----~~~~~~vS~~EIy---l~Dll~---~~l~i~e 239 (262)
|+||||||||||||||||+|.. .++|||||++++||..+.. .+|.|+|||+||| |+|||. .+|.++|
T Consensus 85 n~tifAYGqTGSGKTyTm~G~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~l~i~e 164 (365)
T 2y65_A 85 NGTIFAYGQTSSGKTHTMEGVIGDSVKQGIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHE 164 (365)
T ss_dssp CEEEEEECSTTSSHHHHHTBSTTCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEEEETTEEEETTCTTCCSBCEEE
T ss_pred ceEEEeecCCCCCCceEEecCCCCcccCChHHHHHHHHHHHHHhccCCceEEEEEEEEEEECCeeeecccCCcCCceEEE
Confidence 9999999999999999999875 4679999999999988753 4899999999999 999985 5799999
Q ss_pred cCCCcEEEcCceEEecCChhhhC
Q psy17370 240 KPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 240 d~~~~v~v~gl~~~~V~s~~e~l 262 (262)
|+.+++||.|++++.|.+.+|++
T Consensus 165 ~~~~~~~v~gl~~~~V~s~~e~~ 187 (365)
T 2y65_A 165 DKNRVPYVKGATERFVSSPEDVF 187 (365)
T ss_dssp CSSSCEEETTCCCEEECSHHHHH
T ss_pred CCCCCEEecCCEEEecCCHHHHH
Confidence 99999999999999999999974
No 16
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=100.00 E-value=2.4e-43 Score=324.37 Aligned_cols=165 Identities=27% Similarity=0.404 Sum_probs=137.7
Q ss_pred CCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcC--------CCCceeeeeceee--------CCCCCcchhhccc
Q psy17370 98 SRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVND--------NAKSYTFKLDHCL--------GQDTDQTSVFTII 160 (262)
Q Consensus 98 ~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~--------~~~~~~f~FD~vf--------~~~~~q~~vy~~~ 160 (262)
.+|+|+|||||++.+|.. +..+++.++++...+..+. ....+.|+||+|| ++.++|++||+.+
T Consensus 1 S~VkV~vRvRPl~~~E~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~ 80 (354)
T 3gbj_A 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCL 80 (354)
T ss_dssp -CEEEEEEECCCCHHHHHHTCCBCEEEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHH
T ss_pred CCcEEEEECCCCChhhhccCCceEEEeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHh
Confidence 379999999999999987 6777788876654432211 1256889999999 5678999999999
Q ss_pred chhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccC-----ccceEEEEEEEEEE---EEecCC
Q psy17370 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWS-----HSGWTGWVSCVVVI---AVDFGC 232 (262)
Q Consensus 161 ~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~-----~~~~~~~vS~~EIy---l~Dll~ 232 (262)
+.|+|+.+|+|||+||||||||||||||||+|..+++|||||++++||..+. ...|.|+|||+||| |+|||.
T Consensus 81 ~~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~ 160 (354)
T 3gbj_A 81 GENILQNAFDGYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLD 160 (354)
T ss_dssp HHHHHHHHHTTCCEEEEEEECTTSSHHHHHTBCSSSBCHHHHHHHHHHHHHHHHCBTTEEEEEEEEEEEEETTEEEETTC
T ss_pred hHHHHHHHhCCceeEEEeeCCCCCCCceEEecCCCCCchhhHHHHHHHHHHHhhcccccceeeeceeEEEecCeeeEccC
Confidence 9999999999999999999999999999999999999999999999998764 24689999999999 999995
Q ss_pred -----CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 233 -----GSWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 -----~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
..|+|+||+.+++||+|++++.|.+.+|++
T Consensus 161 ~~~~~~~l~i~e~~~~g~~v~gl~~~~v~s~~e~~ 195 (354)
T 3gbj_A 161 PKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIE 195 (354)
T ss_dssp ------CBCBC------CCBTTCCCEEECSHHHHH
T ss_pred CCCCCcceEEEEcCCCCEEEEeeEEEecCCHHHHH
Confidence 469999999999999999999999999974
No 17
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=100.00 E-value=3.2e-43 Score=327.77 Aligned_cols=167 Identities=22% Similarity=0.237 Sum_probs=145.1
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEE-cCCC-------CceeeeeceeeCCCCCcchhhcccchhhHh
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKV-NDNA-------KSYTFKLDHCLGQDTDQTSVFTIIAQPLLD 166 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~-~~~~-------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~ 166 (262)
++++|+|+||+||++..|.. +...+|.+.++...+.. +... ..+.|+||+||+++++|++||+.+++|||+
T Consensus 69 ~~~~I~V~vRvRPl~~~E~~~~~~~~v~~~~~~~v~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~tQ~~Vy~~~~~plV~ 148 (410)
T 1v8k_A 69 EEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQ 148 (410)
T ss_dssp SCCCEEEEEEECCCCHHHHHTTCCBCEECCSSSEEEEEEEEECTTCCEEEEEEEEECSEEECTTCCHHHHHHHTTHHHHH
T ss_pred CCCCeEEEEEeCCCChhHhhcCCccEEEECCCCEEEEecCcccccccccccceEEeeeEEEecCCChhhhhHHHHHHHHH
Confidence 47899999999999999876 55667777655544322 2111 357899999999999999999999999999
Q ss_pred hhhCCCceeEeeeeccCCCCceecCCCC------CCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC
Q psy17370 167 AAFNGYNVCLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC 232 (262)
Q Consensus 167 ~~l~G~n~~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~ 232 (262)
.+|+|||+||||||||||||||||+|+. .++|||||++++||..++. ..|.|+|||+||| |+|||.
T Consensus 149 ~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Giipra~~~lF~~~~~~~~~~~~~~V~vS~lEIYnE~i~DLL~ 228 (410)
T 1v8k_A 149 TIFEGGKATCFAYGQTGSGKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN 228 (410)
T ss_dssp HHHTTCEEEEEEEESTTSSHHHHHHCBC----CBGGGSHHHHHHHHHHHHHTSHHHHTTCCEEEEEEEEEETTEEEETTT
T ss_pred HHhcCCceeEEeecCCCCCCCeEeecCCCCCCccccCcchhhhHHHHHHHHhhhcccCccEEEEEEEEEeeCCEEEECCC
Confidence 9999999999999999999999999963 5689999999999988764 4789999999999 999996
Q ss_pred --CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 233 --GSWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 --~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
..|+|+||+.+++||.||+++.|.+.+|++
T Consensus 229 ~~~~l~i~ed~~~~v~V~gl~e~~V~s~~e~~ 260 (410)
T 1v8k_A 229 KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVI 260 (410)
T ss_dssp TTEEEEEEECSSCCEEEETCCCEEESSHHHHH
T ss_pred CCCCceEEECCCCCeEecCCEEEEeCCHHHHH
Confidence 468999999999999999999999999974
No 18
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=100.00 E-value=6.1e-43 Score=323.52 Aligned_cols=167 Identities=22% Similarity=0.334 Sum_probs=145.3
Q ss_pred CCCCeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcC--CCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCC
Q psy17370 96 ECSRMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVND--NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGY 172 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~--~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~ 172 (262)
..++|+|+||+||++..|.. +...++.+.++...+.... ....+.|+||+||+++++|++||+.+++|||+.+|+||
T Consensus 21 ~~~~i~V~vRvRP~~~~E~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~vf~~~~~Q~~Vy~~~~~plv~~~l~G~ 100 (373)
T 2wbe_C 21 SNQNIQVYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTFDRSFGPESKQCDVYSVVVSPLIEEVLNGY 100 (373)
T ss_dssp CCEECEEEEEECCCCHHHHHHTCCBCEEEETTTEEEESSSSSSTTCEEEECSEEECTTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCeEEEEEcCCCChhhhccCCCceEEEcCCCeEEEecCCCCCCceEEeccEEeccccchhHHHHHHHHHHHHHHhCCc
Confidence 46799999999999999876 5666777776665544332 22578999999999999999999999999999999999
Q ss_pred ceeEeeeeccCCCCceecCCCCC-----------CCchHhhhhhccccccC--ccceEEEEEEEEEE---EEecCC----
Q psy17370 173 NVCLFAYGQTGSGKSYRGDSTLN-----------SSVLRPRVLFYPGFSWS--HSGWTGWVSCVVVI---AVDFGC---- 232 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~G~~~-----------~~Giipr~~~~lf~~~~--~~~~~~~vS~~EIy---l~Dll~---- 232 (262)
|+||||||||||||||||+|... ++|||||++++||..+. +.+|.|+|||+||| |+|||.
T Consensus 101 n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~ 180 (373)
T 2wbe_C 101 NCTVFAYGQTGTGKTHTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTDDT 180 (373)
T ss_dssp CEEEEEECSTTSSHHHHHTBSCSCCSSSCSSCTTTBCHHHHHHHHHHHHHHHCCSCEEEEEEEEEEETTEEEESSCTTSC
T ss_pred eEEEEeecCCCCCcceecccCccccccccccccCCCcChHHHHHHHHHHHHhcCceEEEEEEEEEEeCCeEEECCCCCCC
Confidence 99999999999999999999763 78999999999999875 45899999999999 999995
Q ss_pred CCceeeecC--CCcEEEcCceEEecCChhhhC
Q psy17370 233 GSWRFESKP--SHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 ~~l~i~ed~--~~~v~v~gl~~~~V~s~~e~l 262 (262)
.++++++|. ++++||.|++++.|.+.+|++
T Consensus 181 ~~l~i~~~~~~~g~v~v~gl~~~~V~s~~e~~ 212 (373)
T 2wbe_C 181 TKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVY 212 (373)
T ss_dssp SCCCEEECSSSSSCEEETTCCCEEESSHHHHH
T ss_pred CCceeEeccCCCCcEEecCceEEccCCHHHHH
Confidence 457788874 478999999999999999974
No 19
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=100.00 E-value=1.7e-42 Score=320.53 Aligned_cols=176 Identities=23% Similarity=0.257 Sum_probs=132.2
Q ss_pred ccCCccccccCCCCCCeEEEEEeCCCCccccCCCcceEEEc-------CCceEEEEcC-------------CCCceeeee
Q psy17370 84 RSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEIS-------PDRREMKVND-------------NAKSYTFKL 143 (262)
Q Consensus 84 ~~~~~~~~~~~~~~~~IkV~vRiRP~~~~E~~~~~~~i~~~-------~~~~~i~~~~-------------~~~~~~f~F 143 (262)
..+++|..++. +++|+|+|||||++..|......++.+. .+...+.+.. ....+.|+|
T Consensus 10 ~~~~hn~~~~~--~~~irV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~F~F 87 (376)
T 2rep_A 10 HSSGLVPRGSL--KGNIRVFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSF 87 (376)
T ss_dssp ---------------CEEEEEEECCCCTTSCCCCGGGSBCCC------CCCCEEECCC-----------------CEEEC
T ss_pred cccccchhhcc--CCCeEEEEEcCCCChhhcccCCceEEEccCcccccCCCcEEEEecCCccccccccccCCCCceeeee
Confidence 35667777764 8999999999999999976322122211 2233333221 114568999
Q ss_pred ceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCC----CCCchHhhhhhccccccCc-----c
Q psy17370 144 DHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTL----NSSVLRPRVLFYPGFSWSH-----S 214 (262)
Q Consensus 144 D~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~----~~~Giipr~~~~lf~~~~~-----~ 214 (262)
|+||+++++|++||+.+ .++|+.+|+|||+||||||||||||||||+|.. +++|||||++++||..+++ .
T Consensus 88 D~Vf~~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~ 166 (376)
T 2rep_A 88 DRVFPPGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGLIPRALRHLFSVAQELSGQGW 166 (376)
T ss_dssp SEEECTTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCHHHHHHHHHHHHHHHGGGGTE
T ss_pred cEEcCCcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCcHHHHHHHHHHHHHHhhcCCe
Confidence 99999999999999985 589999999999999999999999999999975 4789999999999987753 3
Q ss_pred ceEEEEEEEEEE---EEecCCC--------Cceeeec--CCCcEEEcCceEEecCChhhhC
Q psy17370 215 GWTGWVSCVVVI---AVDFGCG--------SWRFESK--PSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 215 ~~~~~vS~~EIy---l~Dll~~--------~l~i~ed--~~~~v~v~gl~~~~V~s~~e~l 262 (262)
+|.|+|||+||| |+|||.. +++|+++ ..++++|.|++++.|.+.+|++
T Consensus 167 ~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~~l~ir~~~~~~~~~~v~gl~~~~V~s~~e~~ 227 (376)
T 2rep_A 167 TYSFVASYVEIYNETVRDLLATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVD 227 (376)
T ss_dssp EEEEEEEEEEEETTEEEETTCCC--------CCEEEC---CCCEEETTCCCEEECSHHHHH
T ss_pred EEEEEEEEEEEECCEeeEccccccccccCCCceEEeccCCCCCEEECCcEEEEeCCHHHHH
Confidence 789999999999 9999953 5789988 5689999999999999999974
No 20
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=100.00 E-value=1.8e-42 Score=323.70 Aligned_cols=178 Identities=24% Similarity=0.315 Sum_probs=146.9
Q ss_pred ccccCCccccccCCCCCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCCC------CceeeeeceeeCCCCCcch
Q psy17370 82 IMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNA------KSYTFKLDHCLGQDTDQTS 155 (262)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~~------~~~~f~FD~vf~~~~~q~~ 155 (262)
..|...+|...+. +++|+|+|||||++..|.....+.+...++.......... ..+.|+||+||+++++|++
T Consensus 45 ~~rr~l~n~~~~l--~gnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~~ 122 (412)
T 3u06_A 45 MERKELHNTVMDL--RDNIRVFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSFDQVFHPLSSQSD 122 (412)
T ss_dssp HHHHHHHHHHHHH--TCSEEEEEEECCCCGGGTTSCBCEEEEEETTEEEEECCC-------CCCEEECSEEECTTCCHHH
T ss_pred HHHHHHHHHHHHh--CCCEEEEEEcCCCCchhccCcceEEEecCCCEEEEecCCcccccccCceEEeeCeEcCCCCCHHH
Confidence 3456677777775 8999999999999998876444555555444432222111 3578999999999999999
Q ss_pred hhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---E
Q psy17370 156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---A 227 (262)
Q Consensus 156 vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l 227 (262)
||+. +.|+|+.+|+|||+||||||||||||||||+|..+++|||||++++||..+.. .+|.|+|||+||| |
T Consensus 123 Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i 201 (412)
T 3u06_A 123 IFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVL 201 (412)
T ss_dssp HHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEE
T ss_pred HHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCccHHHHHHHHHHhhhhhcccCceEEEEEEEEEEeCCee
Confidence 9986 56999999999999999999999999999999999999999999999998753 4789999999999 9
Q ss_pred EecCC---CCceee--ecCCCcEEEcCceEEecCChhhhC
Q psy17370 228 VDFGC---GSWRFE--SKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 228 ~Dll~---~~l~i~--ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
+|||. .++.++ ++..+++||.|++++.|.+.+|++
T Consensus 202 ~DLL~~~~~~~~i~~~~~~~~~~~v~gl~~~~v~s~~e~~ 241 (412)
T 3u06_A 202 YDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLR 241 (412)
T ss_dssp EETTCCSCCCCCEEECSSCTTSEEETTCCCEECCSHHHHH
T ss_pred EEcCCCCCCCceeeeeecCCCCEEEcceEEEEeCCHHHHH
Confidence 99995 344455 567789999999999999999874
No 21
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.4e-41 Score=312.88 Aligned_cols=161 Identities=22% Similarity=0.325 Sum_probs=133.2
Q ss_pred CCCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcC-----------CCCceeeeeceeeCCCCCcchhhcccchhh
Q psy17370 96 ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVND-----------NAKSYTFKLDHCLGQDTDQTSVFTIIAQPL 164 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~-----------~~~~~~f~FD~vf~~~~~q~~vy~~~~~pl 164 (262)
.+++|+|+||+||+++.|.. .+.+.++...+.+.. ....+.|+||+||+ +++|++||+.+++||
T Consensus 22 ~~~~i~V~vRvRP~~~~e~~----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~F~FD~Vf~-~~sQ~~Vy~~~~~pl 96 (359)
T 3nwn_A 22 TRKKVHAFVRVKPTDDFAHE----MIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 96 (359)
T ss_dssp --CCEEEEEEECCCSSCCTT----TEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCEEEEEEcCCCCccccc----ceeecCCCcEEEEecCCccccccccCCcCceEeecCccCC-CCCHHHHHHHHHHHH
Confidence 36799999999999876633 344444444443322 22567899999997 689999999999999
Q ss_pred HhhhhCCCceeEeeeeccCCCCceecCCCC---CCCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC---
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRGDSTL---NSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC--- 232 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm~G~~---~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~--- 232 (262)
|+.+|+|||+||||||||||||||||+|.. +++|||||++++||..++. ..|.|+|||+||| |+|||.
T Consensus 97 v~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 176 (359)
T 3nwn_A 97 VSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLP 176 (359)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSST
T ss_pred HHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhhHHHHHHHHHHHhhcCCCCcEEEEEEEEEEecccccccccccc
Confidence 999999999999999999999999999976 4589999999999987653 5799999999999 999995
Q ss_pred ------CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 233 ------GSWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 ------~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
..+.+++++ .|+|+.|++++.|.+.+|++
T Consensus 177 ~~~~~~~~~~~~~~~-~g~~v~~l~~~~v~s~~e~~ 211 (359)
T 3nwn_A 177 YVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAF 211 (359)
T ss_dssp TSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHH
T ss_pred ccccccccceEEecC-CceEEeccEEEEecCHHHHH
Confidence 346777774 57999999999999999874
No 22
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=100.00 E-value=6e-41 Score=308.52 Aligned_cols=161 Identities=22% Similarity=0.324 Sum_probs=137.1
Q ss_pred CCCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCC-----------CCceeeeeceeeCCCCCcchhhcccchhh
Q psy17370 96 ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDN-----------AKSYTFKLDHCLGQDTDQTSVFTIIAQPL 164 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~-----------~~~~~f~FD~vf~~~~~q~~vy~~~~~pl 164 (262)
.+++|+|+||+||+...+ ..++.+.++...+.+... ...+.|+||+||+ +++|++||+.+++|+
T Consensus 21 ~~g~IrV~vRvRP~~~~~----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~~~~~~F~fD~Vf~-~~sQ~~Vy~~~~~~l 95 (358)
T 2nr8_A 21 TRKKVHAFVRVKPTDDFA----HEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQDLVYETVAKDV 95 (358)
T ss_dssp --CCEEEEEEECCCSSCC----TTTEEECTTSSEEEEECCCCSSHHHHTTSCCEEEEECSEEEE-SCCHHHHHHHHTHHH
T ss_pred CCCCeEEEEEcCCCCCCc----cceeEECCCCCEEEEecCCccccccccCCCcceEEECCeecC-CcCHHHHHHHHHHHH
Confidence 378999999999997643 345666666555543221 2467899999995 899999999999999
Q ss_pred HhhhhCCCceeEeeeeccCCCCceecCCCCC---CCchHhhhhhccccccCc---cceEEEEEEEEEE---EEecCC---
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRGDSTLN---SSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI---AVDFGC--- 232 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~---~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy---l~Dll~--- 232 (262)
|+.+|+|||+||||||||||||||||+|..+ ++|||||++++||..+++ ..|.|+|||+||| |+|||.
T Consensus 96 v~~~l~G~N~tIfAYGqTGSGKTyTM~G~~~~~~~~Giipra~~~lF~~i~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~ 175 (358)
T 2nr8_A 96 VSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLP 175 (358)
T ss_dssp HHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCHHHHHHHHHHHHHHTCTTSCEEEEEEEEEEETTEEEETTSSST
T ss_pred HHHHhCCCceEEEEECCCCCCCceEecccccccccCCcHHHHHHHHHHHHhhcCCceEEEEEEEEEEeCCeeeECcCCcc
Confidence 9999999999999999999999999999875 489999999999998764 4799999999999 999985
Q ss_pred ------CCceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 233 ------GSWRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 ------~~l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
.++.|+||+ .|+||.|++++.|.+.+|++
T Consensus 176 ~~~~~~~~l~i~e~~-~g~~v~gl~~~~v~s~~e~~ 210 (358)
T 2nr8_A 176 YVGPSVTPMTIVENP-QGVFIKGLSVHLTSQEEDAF 210 (358)
T ss_dssp TSCTTTSCCEEEEET-TEEEEETCCCEECSSHHHHH
T ss_pred ccCccCCceEEEECC-CceEecCCEEEEcCCHHHHH
Confidence 468999997 78999999999999999874
No 23
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=100.00 E-value=7.5e-42 Score=314.75 Aligned_cols=164 Identities=19% Similarity=0.159 Sum_probs=133.7
Q ss_pred CeEEEEEeCCCCccccC-CCcceEEEcCCceEEEEcCC--------CCceeeeeceeeCCCCCcchhhcccchhhHhhhh
Q psy17370 99 RMTVAVRIRPLLVKELH-MDVSSIEISPDRREMKVNDN--------AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAF 169 (262)
Q Consensus 99 ~IkV~vRiRP~~~~E~~-~~~~~i~~~~~~~~i~~~~~--------~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l 169 (262)
+|+|+||+||++..|.. +...++.+.++...+...+. ...+.|.||+||+++++|++||+.+++|+|+++|
T Consensus 1 ~IrV~vRvRP~~~~E~~~~~~~~v~~~~~~~i~i~~~~~~~~~~~~~~~~~F~FD~Vf~~~~~Q~~Vy~~~~~plv~~~~ 80 (360)
T 1ry6_A 1 MIKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVDNFTVYENTIKPLIIDLY 80 (360)
T ss_dssp CEEEEEEECCCCHHHHHTTCCBCEEEEETTEEEEEEEEEETTTEEEEEEEEEECSEEECTTCCHHHHHHHHTHHHHHHHH
T ss_pred CeEEEEECCCCChHHhccCCceEEEECCCCEEEEeCCccccccccccccceEEeeeEecCCCCHHHHHHHHhhhhhhhhc
Confidence 59999999999999976 55667777665543322111 1357899999999999999999999999999999
Q ss_pred C-CCceeEeeeeccCCCCceecCCCC-----CCCchHhhhhhccccccC----ccceEEEEEEEEEE---EEecCC--CC
Q psy17370 170 N-GYNVCLFAYGQTGSGKSYRGDSTL-----NSSVLRPRVLFYPGFSWS----HSGWTGWVSCVVVI---AVDFGC--GS 234 (262)
Q Consensus 170 ~-G~n~~ifaYG~tgSGKTyTm~G~~-----~~~Giipr~~~~lf~~~~----~~~~~~~vS~~EIy---l~Dll~--~~ 234 (262)
+ |+||||||||||||||||||+|.. +++|||||++++||..++ +..+.|+|||+||| |+|||. ..
T Consensus 81 ~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Giipr~~~~lF~~i~~~~~~~~~~v~vS~~EIYnE~v~DLL~~~~~ 160 (360)
T 1ry6_A 81 ENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRKM 160 (360)
T ss_dssp HHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCHHHHHHHHHHHHHHHHCSSSCEEEEEEEEEEETTEEEESCCC---
T ss_pred cCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCcHHHHHHHHHHHHHhhccCCceEEEEEEEEeeCCeeEEcccCCcc
Confidence 6 999999999999999999999974 689999999999998775 35789999999999 999996 45
Q ss_pred ceeeecCCCcEEEcCceEEecCChhhhC
Q psy17370 235 WRFESKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 235 l~i~ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
+.++++..+++||.|++++.|.+.+|++
T Consensus 161 ~~~~e~~~~~~~v~gl~~~~V~s~~e~~ 188 (360)
T 1ry6_A 161 VAALENGKKEVVVKDLKILRVLTKEELI 188 (360)
T ss_dssp --------CCBCGGGSCCEEECSHHHHH
T ss_pred ceeeEcCCCCEEEcCcEEEEeCCHHHHH
Confidence 7788999999999999999999999974
No 24
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=100.00 E-value=1e-40 Score=306.38 Aligned_cols=163 Identities=24% Similarity=0.340 Sum_probs=132.5
Q ss_pred CCCeEEEEEeCCCCccccCC-CcceEEEc---CCceEEEEcCC---CCceeeeeceeeCCCCCcchhhcccchhhHhhhh
Q psy17370 97 CSRMTVAVRIRPLLVKELHM-DVSSIEIS---PDRREMKVNDN---AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAF 169 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~~-~~~~i~~~---~~~~~i~~~~~---~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l 169 (262)
+++|+|+|||||++..|... ...++... .....+.+... ...+.|+||+||+++++|++||+.+ .++|+.+|
T Consensus 4 kgnIrV~vRvRP~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~vf~~v-~~lv~~~l 82 (349)
T 3t0q_A 4 RGNIRVYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNKEIFEEI-RQLVQSSL 82 (349)
T ss_dssp -CEEEEEEEECCCCTTSCCCCTTEEECCCBC--CBEEEEEEECC--CEEEEEEESEEECTTCCHHHHHHHH-HHHHHGGG
T ss_pred CCCcEEEEEeCCCCccccccCceEEEeeccCCCCceEEEEcCCCCcccceeeecCEEECCCccHHHHHHHH-HHHHHHHH
Confidence 68999999999999998763 22223221 12223333221 2467899999999999999999985 69999999
Q ss_pred CCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC---------
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC--------- 232 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~--------- 232 (262)
+|||+||||||||||||||||+|+ +.|||||++++||..+++ .+|.++|||+||| |+|||.
T Consensus 83 ~G~n~tifAYGqTGSGKTyTm~g~--~~Giipr~~~~lF~~~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~~ 160 (349)
T 3t0q_A 83 DGYNVCIFAYGQTGSGKTYTMLNA--GDGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRDFKSHDNID 160 (349)
T ss_dssp TTCEEEEEEECSTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEETTC---------
T ss_pred CCcceeEEEeCCCCCCCceEeCCC--CCchhhHHHHHHHHHHHHhhhcCceeEEEEEEEEEEcchhhccccccccccccc
Confidence 999999999999999999999997 569999999999987653 3788999999999 999984
Q ss_pred -----CCceeeecCC-CcEEEcCceEEecCChhhhC
Q psy17370 233 -----GSWRFESKPS-HEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 -----~~l~i~ed~~-~~v~v~gl~~~~V~s~~e~l 262 (262)
..+.|+++.. +++||.|++++.|.+.+|++
T Consensus 161 ~~~~~~~~~i~~~~~~~g~~v~~l~~~~v~s~~e~~ 196 (349)
T 3t0q_A 161 EILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVD 196 (349)
T ss_dssp ------CCCEEEETTTTEEEETTCCCEECCCHHHHH
T ss_pred cccccccceeEEecCCCCEEEeCCEEEEeCCHHHHH
Confidence 3567887765 68999999999999999974
No 25
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=100.00 E-value=1.5e-40 Score=304.93 Aligned_cols=163 Identities=23% Similarity=0.321 Sum_probs=132.4
Q ss_pred CCCeEEEEEeCCCCccccCCCcceEEEcC-----CceEEEEcC---CCCceeeeeceeeCCCCCcchhhcccchhhHhhh
Q psy17370 97 CSRMTVAVRIRPLLVKELHMDVSSIEISP-----DRREMKVND---NAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAA 168 (262)
Q Consensus 97 ~~~IkV~vRiRP~~~~E~~~~~~~i~~~~-----~~~~i~~~~---~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~ 168 (262)
+++|+|+||+||++..+...+..++.+.. ....+.+.. ....+.|+||+||+++++|++||+.+ .|+|+.+
T Consensus 2 k~nIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~f~FD~Vf~~~~~Q~~Vy~~v-~~lv~~~ 80 (347)
T 1f9v_A 2 RGNIRVYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVDVFKEV-GQLVQSS 80 (347)
T ss_dssp -CEEEEEEEECCCCTTTCCCTTEEEEECCCBTTTTBEEEEEEEGGGTTCEEEEEESEEECTTCCHHHHHHHH-HHHHGGG
T ss_pred CCCeEEEEEeCCCCcccccCCCceEEEecccCCCCceEEEEecCCCCcCceEEeeCEEECCCCCHHHHHHHH-HHHHHHh
Confidence 57899999999999732222334444432 123333322 23678999999999999999999985 6999999
Q ss_pred hCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCCC-------
Q psy17370 169 FNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGCG------- 233 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~~------- 233 (262)
|+|||+||||||||||||||||+|+ ++|||||++++||..+++ .+|.|+|||+||| |+|||..
T Consensus 81 l~G~n~tifAYGqTGSGKTyTM~G~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~~~~ 158 (347)
T 1f9v_A 81 LDGYNVCIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRSDNNNKED 158 (347)
T ss_dssp GGTCCEEEEEECCTTSSHHHHHHST--TTSHHHHHHHHHHHHHHHHGGGTCEEEEEEEEEEEETTEEEETTC--------
T ss_pred cCCceeEEEEECCCCCCCcEeccCC--CCCchHHHHHHHHHHHHhhhhcCCceEEEEEEEEEECCeeeeccCCccccccc
Confidence 9999999999999999999999996 579999999999988753 3789999999999 9999952
Q ss_pred -----CceeeecC-CCcEEEcCceEEecCChhhhC
Q psy17370 234 -----SWRFESKP-SHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 234 -----~l~i~ed~-~~~v~v~gl~~~~V~s~~e~l 262 (262)
.+.|+++. .++++|.|++++.|.+.+|++
T Consensus 159 ~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~ 193 (347)
T 1f9v_A 159 TSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVE 193 (347)
T ss_dssp -----CCCEEEETTTTEEEETTCCCEECSSGGGHH
T ss_pred cccCCceeEEEecCCCceEecCCEEEEcCCHHHHH
Confidence 36788765 488999999999999999974
No 26
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.9e-40 Score=308.53 Aligned_cols=175 Identities=22% Similarity=0.303 Sum_probs=140.3
Q ss_pred cccCCccccccCCCCCCeEEEEEeCCCCccccCCCcceEEEcC---C--ceEEEE---cCCCCceeeeeceeeCCCCCcc
Q psy17370 83 MRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISP---D--RREMKV---NDNAKSYTFKLDHCLGQDTDQT 154 (262)
Q Consensus 83 ~~~~~~~~~~~~~~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~---~--~~~i~~---~~~~~~~~f~FD~vf~~~~~q~ 154 (262)
.|...+|..++. +|+|+|+|||||+...+...+...+.+.. . ...+.+ ......+.|.||+||+++++|+
T Consensus 46 ~rr~l~n~~~el--kgnIrV~vRvRP~~~~~e~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~F~FD~VF~~~~~Q~ 123 (403)
T 4etp_A 46 VRRTLHNELQEL--RGNIRVYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNV 123 (403)
T ss_dssp HHHHHHHHHHHH--HCSEEEEEEECCCCTTTSCSCCTTEEECCCBTTTTBEEEEEEECSSSCEEEEEEESEEECTTCCHH
T ss_pred HHHHHHHHHHHc--CCCeEEEEEeCCCCCcccccCCCeeEEeeccCCCCceEEEEecCCCCcCceEEEcCEEECCCCchH
Confidence 355667777765 79999999999998774332333444431 1 122222 2222568999999999999999
Q ss_pred hhhcccchhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---
Q psy17370 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI--- 226 (262)
Q Consensus 155 ~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy--- 226 (262)
+||+.+ .++|+.+|+|||+||||||||||||||||+|+ +.|||||++++||..++. ..|.|+|||+|||
T Consensus 124 ~Vf~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Giipr~~~~lF~~i~~~~~~~~~~~v~vS~~EIYnE~ 200 (403)
T 4etp_A 124 DVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNEN 200 (403)
T ss_dssp HHHHHH-HHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHHTTTEEEEEEEEEEEEETTE
T ss_pred HHHHHH-HHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCccchhHHHHHHHHHHhhhccCceEEEEEEEEEEecce
Confidence 999985 58999999999999999999999999999997 569999999999987753 3789999999999
Q ss_pred EEecCCC------------CceeeecCC-CcEEEcCceEEecCChhhhC
Q psy17370 227 AVDFGCG------------SWRFESKPS-HEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 227 l~Dll~~------------~l~i~ed~~-~~v~v~gl~~~~V~s~~e~l 262 (262)
|+|||.. .+.|+++.. ++++|.|++++.|.+.+|++
T Consensus 201 i~DLL~~~~~~~~~~~~~~~~~i~~~~~~~~~~v~~l~~~~v~s~~e~~ 249 (403)
T 4etp_A 201 IVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVE 249 (403)
T ss_dssp EEETTCC--------CCSCCCCEEEETTTTEEEETTCCCEECCCHHHHH
T ss_pred eeEccCCccccccccccCcceeeEEeCCCCCEEecCcEEEEeCCHHHHH
Confidence 9999952 456777765 78999999999999999874
No 27
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=100.00 E-value=1.3e-39 Score=298.16 Aligned_cols=160 Identities=21% Similarity=0.273 Sum_probs=127.3
Q ss_pred CCCCeEEEEEeCCCCccccCCCcceEEEcC--CceEEEEcCCCCceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCc
Q psy17370 96 ECSRMTVAVRIRPLLVKELHMDVSSIEISP--DRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYN 173 (262)
Q Consensus 96 ~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~--~~~~i~~~~~~~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n 173 (262)
..++|+|+||+||++..|..++..++.+.+ +...+.. ..+.|+||+||+++++|++||+.+++|+|+.+|+|||
T Consensus 20 ~~~~VrV~vRvRP~~~~e~~~~~~~v~~~~~~~~~~~~~----~~~~F~FD~Vf~~~~sQ~~Vy~~~~~plv~~~l~G~N 95 (344)
T 3dc4_A 20 KLSAVRIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIV----DQNEFHFDHAFPATISQDEMYQALILPLVDKLLEGFQ 95 (344)
T ss_dssp CCSEEEEEEEECCCC-------CCSEECCSSSCSSEEEE----TTEEEECSEEECTTCCHHHHHHHHTHHHHHHHHHTCC
T ss_pred CCCCeEEEEECCCCCcccccCCceEEEecCCCCCceEEe----cCcEEEcceEECCCCCHHHHHHhhccchhhHhhCCCc
Confidence 467999999999999877555666677654 3334443 4689999999999999999999999999999999999
Q ss_pred eeEeeeeccCCCCceecCCCC------CCCchHhhhhhccccccCc------cceEEEEEEEEEE---EEecCCCCceee
Q psy17370 174 VCLFAYGQTGSGKSYRGDSTL------NSSVLRPRVLFYPGFSWSH------SGWTGWVSCVVVI---AVDFGCGSWRFE 238 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm~G~~------~~~Giipr~~~~lf~~~~~------~~~~~~vS~~EIy---l~Dll~~~l~i~ 238 (262)
+||||||||||||||||+|.. +++|||||++++||..++. ..|.|+|||+||| |+|||...-..
T Consensus 96 ~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GIipra~~~LF~~i~~~~~~~~~~~~v~vS~~EIYnE~i~DLL~~~~~~- 174 (344)
T 3dc4_A 96 CTALAYGQTGTGKSYSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGSTPHM- 174 (344)
T ss_dssp EEEEEESSTTSSHHHHHTCSCGGGSCGGGCCHHHHHHHHHHHHHHHSSSSCSSCCEEEEEEEEEESSCEEETTSSCTTS-
T ss_pred eEEEEecCCCCCCCeEEcCCCCCCCCcccCCcHHHHHHHHHHHHHhhhhccccceEEEEEEEEEeCCeeEEccCCCCCC-
Confidence 999999999999999999874 5789999999999987752 3589999999999 99999643211
Q ss_pred ecCCCcEEEcCceEEecCChhhhC
Q psy17370 239 SKPSHEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 239 ed~~~~v~v~gl~~~~V~s~~e~l 262 (262)
+..+..+.|++++.|.+.+|++
T Consensus 175 --~~~~~~~~~~~~~~v~s~~e~~ 196 (344)
T 3dc4_A 175 --PMVAARCQRCTCLPLHSQADLH 196 (344)
T ss_dssp --BCCSSTTTCSCCEECSSHHHHH
T ss_pred --ccccccccCceecccCCHHHHH
Confidence 1123335689999999999874
No 28
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}
Probab=100.00 E-value=1.4e-35 Score=295.15 Aligned_cols=163 Identities=21% Similarity=0.268 Sum_probs=124.5
Q ss_pred CCCeEEEEEeC----CCCccccCCCcceEEEcC-------CceEE--EEcCC--CCceeeeeceeeCCCCCcchhhcccc
Q psy17370 97 CSRMTVAVRIR----PLLVKELHMDVSSIEISP-------DRREM--KVNDN--AKSYTFKLDHCLGQDTDQTSVFTIIA 161 (262)
Q Consensus 97 ~~~IkV~vRiR----P~~~~E~~~~~~~i~~~~-------~~~~i--~~~~~--~~~~~f~FD~vf~~~~~q~~vy~~~~ 161 (262)
.++++||||+| |....|..+....+.+.. ....+ ..+.. ...+.|+||+||+++++|++||+.+
T Consensus 373 l~~~rV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~fd~vf~~~~~q~~v~~~~- 451 (715)
T 4h1g_A 373 KGNIRVFCRIRNVSSSSSSSSSSSSEDIIQYEAPQDINDESKQELVITRNINNNFSNLRFLFDKIFEREQSNDLVFEEL- 451 (715)
T ss_dssp SCSEEEEEEECCCC-------------BCEEECCC-------CEEEEEEEETTEEEEEEEECSEEECSSCCHHHHGGGT-
T ss_pred HhcCeEEEEEeccccccccccccccccceeccCCCCCCCCCCCeEEEcCCCCCCCCCeEEEeceEeCCCCCHHHHHHHH-
Confidence 57899999999 555555442222223211 11222 22222 2789999999999999999999975
Q ss_pred hhhHhhhhCCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc-----cceEEEEEEEEEE---EEecCC-
Q psy17370 162 QPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH-----SGWTGWVSCVVVI---AVDFGC- 232 (262)
Q Consensus 162 ~plv~~~l~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~-----~~~~~~vS~~EIy---l~Dll~- 232 (262)
.|+|+.+|+|||+||||||||||||||||+|+ ++|||||++++||..+++ ..+.|+|||+||| |+|||.
T Consensus 452 ~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--~~Giipr~~~~lf~~~~~~~~~~~~~~v~~s~~Eiyne~i~DLl~~ 529 (715)
T 4h1g_A 452 SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--TNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYNEAIVDLLNP 529 (715)
T ss_dssp HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--TTSHHHHHHHHHHHHHHHHGGGTEEEEEEEEEEEEETTEEEESSSC
T ss_pred HHHHHHHhCCceEEEEccCCCCCchhhccCCC--CCCcHHHHHHHHHHHHHHhhcCCceEEEEEEEEEEECCEEEECCCC
Confidence 59999999999999999999999999999996 689999999999988753 3788999999999 999995
Q ss_pred -----CCceeeecCC-CcEEEcCceEEecCChhhhC
Q psy17370 233 -----GSWRFESKPS-HEIYLSVSVLTDITKFIEVY 262 (262)
Q Consensus 233 -----~~l~i~ed~~-~~v~v~gl~~~~V~s~~e~l 262 (262)
..+.++++.. ++++|.|++++.|.+.+|++
T Consensus 530 ~~~~~~~~~~~~~~~~g~~~v~~l~~~~v~~~~~~~ 565 (715)
T 4h1g_A 530 KIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAI 565 (715)
T ss_dssp CCCTTCCCCEEEETTTTEEEETTCCCEECSCHHHHH
T ss_pred CCCCCCcceeEEecCCCCEEEeCCEEEEcCCHHHHH
Confidence 3467776654 66999999999999999874
No 29
>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}
Probab=99.94 E-value=2.5e-27 Score=208.23 Aligned_cols=154 Identities=11% Similarity=-0.015 Sum_probs=124.7
Q ss_pred cccCCccccccCCCCCCeEEEEEeCCCC-ccccCCCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCCCcc--hhhcc
Q psy17370 83 MRSSSENCVADNLECSRMTVAVRIRPLL-VKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQT--SVFTI 159 (262)
Q Consensus 83 ~~~~~~~~~~~~~~~~~IkV~vRiRP~~-~~E~~~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~~q~--~vy~~ 159 (262)
.|+.++|..++. +|+||||||+||.. .. .+.+...... +.. .. ..+.|.||+||++.+.|+ +||++
T Consensus 11 ~RRkL~NsI~EL--KGnIRVFcrvrp~~~p~-----~~~v~y~~~~--I~v-~~-~~k~f~FDRVf~p~s~Qe~~~vf~E 79 (298)
T 2o0a_A 11 RSRRLENSIIEQ--KGTMRCYAYVMEQNLPE-----NLLFDYENGV--ITQ-GL-SEHVYKFNRVIPHLKVSEDKFFTQE 79 (298)
T ss_dssp HHHHHHHHHHHH--HTCCEEEEEECGGGSCT-----TEEEETTTTE--EEE-TT-TCCEEECSEEEETTTSCHHHHHHHT
T ss_pred HHHHHHhHHHHh--hCceEEEEEeccccCCc-----cceeecCccc--eee-cC-CCceEEeeeEECccccccHHHHHHH
Confidence 345566766664 79999999999965 21 1223333322 333 11 348999999999999999 99999
Q ss_pred cchhhHhhhhC-CCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccccCc---cceEEEEEEEEEE----EEecC
Q psy17370 160 IAQPLLDAAFN-GYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH---SGWTGWVSCVVVI----AVDFG 231 (262)
Q Consensus 160 ~~~plv~~~l~-G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~~~~---~~~~~~vS~~EIy----l~Dll 231 (262)
+.++|+.+|+ |||+||||||||||||| ||++..+|...++ ..|.+.++|+||| +.|||
T Consensus 80 -~~~~i~scLd~GyNvcIfSyGQTGsGKT-------------~ral~q~f~~~~~~~~~~Y~~tlq~veLy~Ne~~~DLL 145 (298)
T 2o0a_A 80 -YSVYHDMCLNQKKNFNLISLSTTPHGSL-------------RESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDML 145 (298)
T ss_dssp -THHHHHHHHHTTCCEEEEEECSSCCHHH-------------HHHHHHHHHSTTSHHHHHEEEEEEEEEEECC-CEEETT
T ss_pred -HHHHHHHHHhCCCceEEEEECCCCCCcc-------------HHHHHHHHHHhhhhcccceEEEEEEEEEecCCchHHhc
Confidence 5699999999 99999999999999999 9999999999877 7999999999999 99998
Q ss_pred C-----CCceeeecCCCcEEEcCceEEecCC-hhhh
Q psy17370 232 C-----GSWRFESKPSHEIYLSVSVLTDITK-FIEV 261 (262)
Q Consensus 232 ~-----~~l~i~ed~~~~v~v~gl~~~~V~s-~~e~ 261 (262)
. +.+.|+.+.++++++.|++.+.|.+ .+|+
T Consensus 146 ~~~~~~~k~eIk~~~~g~~iv~~s~~i~V~~~~edv 181 (298)
T 2o0a_A 146 LDYSHNDKDSIKLKFEKHSISLDSKLVIIENGLEDL 181 (298)
T ss_dssp SCCC------CEEEECSSCEEEESCCEEESSGGGGS
T ss_pred CCCCCCCcceEEecCCCCEEecccEEEEccccHHHH
Confidence 4 3457888889999999999999999 8876
No 30
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=93.88 E-value=0.0065 Score=48.88 Aligned_cols=50 Identities=18% Similarity=0.159 Sum_probs=32.8
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.++||........|+++++.+ ..+++.+-......++-||++|+|||+.+
T Consensus 6 ~~~f~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 6 NANLDTYHPKNVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp TCCSSSCCCCSHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred hCccccccCCCHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence 456777665555677777653 35555543222334667999999999987
No 31
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=92.67 E-value=0.018 Score=46.92 Aligned_cols=50 Identities=20% Similarity=0.197 Sum_probs=31.4
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHhhhhCCC-ceeEeeeeccCCCCceec
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGY-NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~-n~~ifaYG~tgSGKTyTm 190 (262)
.++||........+..+++. +..++...-.+. +..++-||++|+|||+.+
T Consensus 21 ~~~f~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la 71 (202)
T 2w58_A 21 RASLSDVDLNDDGRIKAIRF-AERFVAEYEPGKKMKGLYLHGSFGVGKTYLL 71 (202)
T ss_dssp CCCTTSSCCSSHHHHHHHHH-HHHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred cCCHhhccCCChhHHHHHHH-HHHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence 45677665444456666664 334444433332 256888999999999976
No 32
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=91.67 E-value=0.03 Score=49.55 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=29.6
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
++||........+..+++ .+...++..-.+....|+-||++|+||||.+
T Consensus 121 ~tfd~f~~~~~~~~~~~~-~~~~~i~~~~~~~~~~lll~G~~GtGKT~La 169 (308)
T 2qgz_A 121 IHLSDIDVNNASRMEAFS-AILDFVEQYPSAEQKGLYLYGDMGIGKSYLL 169 (308)
T ss_dssp CCGGGSCCCSHHHHHHHH-HHHHHHHHCSCSSCCEEEEECSTTSSHHHHH
T ss_pred CCHhhCcCCChHHHHHHH-HHHHHHHhccccCCceEEEECCCCCCHHHHH
Confidence 566654433334445555 2334555443333456778999999999987
No 33
>4etp_B Spindle POLE BODY-associated protein VIK1; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=89.72 E-value=0.59 Score=41.54 Aligned_cols=126 Identities=11% Similarity=0.086 Sum_probs=75.6
Q ss_pred ccCCccccccCCCCCCeEEEEEeCCCCccccCCCcceEEEcCCceEEEEcCCCCceeeeeceeeCCCC--Ccchhhcccc
Q psy17370 84 RSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDT--DQTSVFTIIA 161 (262)
Q Consensus 84 ~~~~~~~~~~~~~~~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i~~~~~~~~~~f~FD~vf~~~~--~q~~vy~~~~ 161 (262)
|+.++|...+. +|.||+|.-+-.-.-. ..+.++-.+..|. ....++.|.|++|++.+. .+..+|++ +
T Consensus 47 RRkLENSIdEl--KG~IRcFAYi~~~~~p------~~~~idY~~~~It--~~~~~~~y~FnRiIp~~~~~e~~~l~qE-~ 115 (333)
T 4etp_B 47 SRRLENSIIEQ--KGTMRVYAYVMEQNLP------ENLLFDYENGVIT--QGLSEHVYKFNRVIPHLKVSEDCFFTQE-Y 115 (333)
T ss_dssp HHHHHHHHHHH--HTCCEEEEEECCSSCC------SSCEEETTTTEEE--C--CCCEEECSEEEETTTCCHHHHHHHT-T
T ss_pred HHHHhhhHHHh--cCcEEEEEEECcccCC------ccEEEecccceEe--ecCCcceEEEeeeechhhcchHHHHHHH-H
Confidence 34444554443 7999999998653211 1345555554554 233788999999997666 55566666 5
Q ss_pred hhhHhhhh-CCCceeEeeeeccCCCCceecCCCCCCCchHhhhhhccccc--cCccceEEEEEEEEEE----EEecCC
Q psy17370 162 QPLLDAAF-NGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFS--WSHSGWTGWVSCVVVI----AVDFGC 232 (262)
Q Consensus 162 ~plv~~~l-~G~n~~ifaYG~tgSGKTyTm~G~~~~~Giipr~~~~lf~~--~~~~~~~~~vS~~EIy----l~Dll~ 232 (262)
+..++-+| .+.|+.|+.-|..- ..-|---.+.+|... +-...|.+.+-|+.+- -.|+|.
T Consensus 116 q~y~DmcL~~~~NfslIsis~~~------------w~~Lr~~lL~fi~~k~~~Y~~~y~i~lQ~V~Lse~~~S~DlL~ 181 (333)
T 4etp_B 116 SVYHDMALNQKKNFNLISLSTTP------------HGSLRESLIKFLAEKDTIYQKQYVITLQFVFLSDDEFSQDMLL 181 (333)
T ss_dssp HHHHHHHHHTTCCEEEEEEESSC------------CCHHHHHHHHHHHSTTCHHHHHEEEEEEEEECCSSSCCEESSC
T ss_pred HHHHHHHHccCCCeeEEEecCCC------------cHHHHHHHHHHHHhcccccccceEEEEEEEEEcCCCchhhhhc
Confidence 58888888 79999999988642 111222223332222 0124666777776655 577764
No 34
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=88.58 E-value=0.13 Score=44.97 Aligned_cols=48 Identities=19% Similarity=0.236 Sum_probs=27.7
Q ss_pred eceeeCCCCCcchhhcccchhhHhhhhC--CC--ceeEeeeeccCCCCceec
Q psy17370 143 LDHCLGQDTDQTSVFTIIAQPLLDAAFN--GY--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 143 FD~vf~~~~~q~~vy~~~~~plv~~~l~--G~--n~~ifaYG~tgSGKTyTm 190 (262)
||..|+..---..+.+.++..++...+. |. ...|+-||+.|+|||+..
T Consensus 2 ~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 2 LDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHH
T ss_pred cccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 4444433323334445555566665553 22 235677999999999865
No 35
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=87.44 E-value=0.15 Score=39.94 Aligned_cols=29 Identities=14% Similarity=0.081 Sum_probs=21.1
Q ss_pred hhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 162 QPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 162 ~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+++.+..+....++-||..|+|||+.+
T Consensus 32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp HHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence 34444444565667888999999999976
No 36
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=86.40 E-value=0.16 Score=39.72 Aligned_cols=28 Identities=14% Similarity=0.063 Sum_probs=20.7
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+++.+..+....++-||..|+|||+.+
T Consensus 33 ~l~~~l~~~~~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 33 RAIQILSRRTKNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp HHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred HHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence 4444444555667889999999999876
No 37
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.61 E-value=0.22 Score=44.02 Aligned_cols=45 Identities=20% Similarity=0.223 Sum_probs=27.2
Q ss_pred eeeCCCCCcchhhcccchhhHhhhh-CCCceeEeeeeccCCCCceec
Q psy17370 145 HCLGQDTDQTSVFTIIAQPLLDAAF-NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 145 ~vf~~~~~q~~vy~~~~~plv~~~l-~G~n~~ifaYG~tgSGKTyTm 190 (262)
+.++....+++..+... ..+..++ .+....++-||+.|+|||+.+
T Consensus 16 ~~p~~~~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCSCCTTCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred cCCCCCCCHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 33333444555554433 3333343 344567889999999999876
No 38
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=84.00 E-value=0.2 Score=42.56 Aligned_cols=45 Identities=18% Similarity=0.244 Sum_probs=20.7
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|+||.+.+.+ .....+. ..+..+.. .+..|+-||.+|+|||+..
T Consensus 2 ~~~f~~~ig~~----~~~~~~~-~~~~~~~~-~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 2 AEYKDNLLGEA----NSFLEVL-EQVSHLAP-LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp --------CCC----HHHHHHH-HHHHHHTT-SCSCEEEECCTTSCHHHHH
T ss_pred CcccccceeCC----HHHHHHH-HHHHHHhC-CCCCEEEECCCCCcHHHHH
Confidence 36788776533 3333322 22233332 2356778999999999865
No 39
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=83.93 E-value=0.19 Score=44.87 Aligned_cols=23 Identities=13% Similarity=-0.003 Sum_probs=19.5
Q ss_pred hhCCCceeEeeeeccCCCCceec
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+-.|...+++-||++|+|||.++
T Consensus 40 i~~~~~~~lli~GpPGTGKT~~v 62 (318)
T 3te6_A 40 LMSSQNKLFYITNADDSTKFQLV 62 (318)
T ss_dssp HHTTCCCEEEEECCCSHHHHHHH
T ss_pred hcCCCCCeEEEECCCCCCHHHHH
Confidence 33677788999999999999876
No 40
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=83.72 E-value=0.34 Score=39.71 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=18.6
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.| ++..++||||||.+
T Consensus 44 ~i~~~~~~~~--~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 44 AIMPIIEGHD--VLAQAQSGTGKTGT 67 (224)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhcCCC--EEEECCCCCcHHHH
Confidence 4556678877 56678999999987
No 41
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=83.69 E-value=0.29 Score=42.89 Aligned_cols=49 Identities=16% Similarity=0.296 Sum_probs=28.5
Q ss_pred eeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..|+||.... ...+...+.. +..+++.-- +....++-||++|+|||+.+
T Consensus 6 ~~~~f~~fv~-g~~~~~a~~~-~~~~~~~~~-~~~~~lll~G~~GtGKT~la 54 (324)
T 1l8q_A 6 PKYTLENFIV-GEGNRLAYEV-VKEALENLG-SLYNPIFIYGSVGTGKTHLL 54 (324)
T ss_dssp TTCCSSSCCC-CTTTHHHHHH-HHHHHHTTT-TSCSSEEEECSSSSSHHHHH
T ss_pred CCCCcccCCC-CCcHHHHHHH-HHHHHhCcC-CCCCeEEEECCCCCcHHHHH
Confidence 3577887652 2334444433 333333211 12346788999999999977
No 42
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=83.40 E-value=0.34 Score=37.93 Aligned_cols=16 Identities=31% Similarity=0.634 Sum_probs=13.6
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||++|+|||+.+
T Consensus 38 ~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLL 53 (149)
T ss_dssp EEEEESSSTTTTCHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4556999999999977
No 43
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=83.00 E-value=0.45 Score=38.32 Aligned_cols=26 Identities=27% Similarity=0.391 Sum_probs=18.5
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+..+++|.+ ++..++||||||.+.
T Consensus 32 ~~i~~~~~~~~--~lv~apTGsGKT~~~ 57 (206)
T 1vec_A 32 ESIPIALSGRD--ILARAKNGTGKSGAY 57 (206)
T ss_dssp HHHHHHHTTCC--EEEECCSSSTTHHHH
T ss_pred HHHHHHccCCC--EEEECCCCCchHHHH
Confidence 34556677876 456779999999643
No 44
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=82.82 E-value=0.38 Score=38.71 Aligned_cols=24 Identities=33% Similarity=0.556 Sum_probs=18.0
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.+ ++..++||||||.+
T Consensus 31 ~i~~~~~~~~--~li~~~TGsGKT~~ 54 (207)
T 2gxq_A 31 ALPLALEGKD--LIGQARTGTGKTLA 54 (207)
T ss_dssp HHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHcCCCC--EEEECCCCChHHHH
Confidence 3456677877 45567999999986
No 45
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=81.70 E-value=0.26 Score=41.74 Aligned_cols=51 Identities=16% Similarity=0.259 Sum_probs=29.3
Q ss_pred eeeeeceeeCCCCCcchhhcccchhhHh-hhh----CCCceeEeeeeccCCCCceec
Q psy17370 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLD-AAF----NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~-~~l----~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+.|+.+.+.+...+.+.+. +..+-. ..+ ......++-||++|+|||+.+
T Consensus 6 ~~~~~~~i~G~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 6 PNVRFKDMAGNEEAKEEVVEI-VDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CCCCSTTSSSCTTTHHHHHHH-HHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHH
T ss_pred CCCCHHHhCCcHHHHHHHHHH-HHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHH
Confidence 346778777766665555442 211110 011 112334788999999999876
No 46
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=81.37 E-value=0.46 Score=39.57 Aligned_cols=25 Identities=32% Similarity=0.505 Sum_probs=19.0
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..+++|.+ ++..++||||||.+
T Consensus 58 ~~i~~~~~~~~--~l~~a~TGsGKT~~ 82 (245)
T 3dkp_A 58 QAIPVMLHGRE--LLASAPTGSGKTLA 82 (245)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHH
Confidence 34556778877 56678999999986
No 47
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=81.06 E-value=0.31 Score=40.64 Aligned_cols=25 Identities=28% Similarity=0.551 Sum_probs=19.0
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..+++|.| ++..++||||||.+
T Consensus 59 ~ai~~i~~~~~--~li~apTGsGKT~~ 83 (237)
T 3bor_A 59 RAIIPCIKGYD--VIAQAQSGTGKTAT 83 (237)
T ss_dssp HHHHHHHTTCC--EEECCCSSHHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCcHHHH
Confidence 34556778877 56688999999976
No 48
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=80.23 E-value=0.24 Score=42.32 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=29.5
Q ss_pred eeeeeceeeCCCCCcchhhcccchhhHhh-hh----CCCceeEeeeeccCCCCceec
Q psy17370 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDA-AF----NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~-~l----~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+.|+.+.+.+..-+.+.+.+..++... .+ -.....++-||+.|+|||+.+
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHH
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 35677777765544444444333222111 11 123345788999999999866
No 49
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=79.94 E-value=0.41 Score=41.91 Aligned_cols=45 Identities=24% Similarity=0.280 Sum_probs=27.4
Q ss_pred ceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 138 SYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 138 ~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
...|+|+.+++. +.+... +...++.+...-|+-||.+|+|||+..
T Consensus 18 ~~~~~f~~i~G~----~~~~~~----l~~~~~~~~~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 18 RPVFPFSAIVGQ----EDMKLA----LLLTAVDPGIGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp CCCCCGGGSCSC----HHHHHH----HHHHHHCGGGCCEEEECCGGGCTTHHH
T ss_pred CCCCCchhccCh----HHHHHH----HHHHhhCCCCceEEEECCCCccHHHHH
Confidence 345778877654 333222 222333333445888999999999865
No 50
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=79.61 E-value=0.68 Score=37.75 Aligned_cols=19 Identities=16% Similarity=0.230 Sum_probs=16.1
Q ss_pred CceeEeeeeccCCCCceec
Q psy17370 172 YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm 190 (262)
....++-||+.|+|||+.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4567888999999999976
No 51
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=79.12 E-value=0.61 Score=38.58 Aligned_cols=25 Identities=32% Similarity=0.530 Sum_probs=18.3
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..+++|.++ +..++||||||.+
T Consensus 54 ~~i~~~~~~~~~--li~a~TGsGKT~~ 78 (236)
T 2pl3_A 54 QTIGLALQGKDV--LGAAKTGSGKTLA 78 (236)
T ss_dssp HHHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHHhCCCCE--EEEeCCCCcHHHH
Confidence 334566788774 4567999999985
No 52
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=78.26 E-value=0.35 Score=38.98 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=18.1
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..+++|.+ ++..++||+|||.+.
T Consensus 41 ~i~~~~~~~~--~li~~~tGsGKT~~~ 65 (216)
T 3b6e_A 41 VAQPALEGKN--IIICLPTGSGKTRVA 65 (216)
T ss_dssp HHHHHHTTCC--EEEECSCHHHHHHHH
T ss_pred HHHHHhcCCC--EEEEcCCCCCHHHHH
Confidence 3445566766 456789999999865
No 53
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=78.09 E-value=0.67 Score=40.39 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=19.0
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..++.|..-.+++.++||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~a 147 (300)
T 3fmo_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (300)
T ss_dssp HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCCccHH
Confidence 34566777334467889999999976
No 54
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=77.98 E-value=0.54 Score=37.52 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=16.3
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+....++-||+.|+|||+.+
T Consensus 35 ~~~~~~~ll~G~~G~GKT~l~ 55 (226)
T 2chg_A 35 RKNIPHLLFSGPPGTGKTATA 55 (226)
T ss_dssp TTCCCCEEEECSTTSSHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHH
Confidence 343334899999999999876
No 55
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=77.92 E-value=0.71 Score=42.64 Aligned_cols=27 Identities=26% Similarity=0.219 Sum_probs=20.9
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
++..++......+.-.|+||||||.+|
T Consensus 158 ~L~~l~~~~ggii~I~GpnGSGKTTlL 184 (418)
T 1p9r_A 158 NFRRLIKRPHGIILVTGPTGSGKSTTL 184 (418)
T ss_dssp HHHHHHTSSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHHhcCCeEEEECCCCCCHHHHH
Confidence 455556555667788899999999987
No 56
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=77.91 E-value=0.69 Score=37.69 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=18.5
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+..+++|.+ ++..++||+|||.+.
T Consensus 43 ~~i~~~~~~~~--~li~~~TGsGKT~~~ 68 (220)
T 1t6n_A 43 ECIPQAILGMD--VLCQAKSGMGKTAVF 68 (220)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHHhCCCC--EEEECCCCCchhhhh
Confidence 33456677877 445679999999854
No 57
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=77.83 E-value=0.14 Score=43.21 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=13.6
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
++-||++|+|||+.+
T Consensus 52 ~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999875
No 58
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=77.45 E-value=1.2 Score=41.38 Aligned_cols=115 Identities=17% Similarity=0.129 Sum_probs=64.4
Q ss_pred CCeEEEEEeCCCCccccCCCcceEEEcCCceEE--EEcCCC----------CceeeeeceeeCCCCCcchhhcccchhhH
Q psy17370 98 SRMTVAVRIRPLLVKELHMDVSSIEISPDRREM--KVNDNA----------KSYTFKLDHCLGQDTDQTSVFTIIAQPLL 165 (262)
Q Consensus 98 ~~IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i--~~~~~~----------~~~~f~FD~vf~~~~~q~~vy~~~~~plv 165 (262)
...+.+|++..+...+.......+.++.+...+ .++... +...-+||.|-+.+..-+++.+.+..|+.
T Consensus 123 ~~~~~~~~~~~~~~~~~l~~~~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~ 202 (434)
T 4b4t_M 123 SRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMK 202 (434)
T ss_dssp TSCEEEEECCSSSCTTTSCSSEEEEECSSSCSEEEEEEESSSCSCSCCEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHH
T ss_pred CCCeEEEecccccCHhHCCCCCEEeEcCcchhhheecCcccCchhhhcccCCCCCCChHhcCcHHHHHHHHHHHHHHHHh
Confidence 345667777777666544333334444333222 111111 23344678887777777777777777765
Q ss_pred hh-hhC--CC--ceeEeeeeccCCCCceec--------------CCCC---CCCchHhhhhhccccccC
Q psy17370 166 DA-AFN--GY--NVCLFAYGQTGSGKSYRG--------------DSTL---NSSVLRPRVLFYPGFSWS 212 (262)
Q Consensus 166 ~~-~l~--G~--n~~ifaYG~tgSGKTyTm--------------~G~~---~~~Giipr~~~~lf~~~~ 212 (262)
.. .+. |. --.|+-||+.|+|||... -|.. ...|--.+.+..+|....
T Consensus 203 ~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~ 271 (434)
T 4b4t_M 203 RADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAK 271 (434)
T ss_dssp CSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHH
T ss_pred CHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHH
Confidence 32 332 32 345778999999999754 1111 344656666666665544
No 59
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=77.44 E-value=0.57 Score=43.32 Aligned_cols=50 Identities=18% Similarity=0.246 Sum_probs=28.2
Q ss_pred CceeeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 137 KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 137 ~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-+..|+||.... ..++...+.. +..+++. .|....++-||+.|+|||+.+
T Consensus 98 l~~~~tfd~fv~-g~~n~~a~~~-~~~~a~~--~~~~~~lll~Gp~G~GKTtLa 147 (440)
T 2z4s_A 98 LNPDYTFENFVV-GPGNSFAYHA-ALEVAKH--PGRYNPLFIYGGVGLGKTHLL 147 (440)
T ss_dssp CCTTCSGGGCCC-CTTTHHHHHH-HHHHHHS--TTSSCCEEEECSSSSSHHHHH
T ss_pred CCCCCChhhcCC-CCchHHHHHH-HHHHHhC--CCCCCeEEEECCCCCCHHHHH
Confidence 345678887442 2233333322 2222222 121346888999999999987
No 60
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=77.35 E-value=0.97 Score=38.33 Aligned_cols=21 Identities=24% Similarity=0.180 Sum_probs=17.7
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
......++-||++|+|||+..
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHH
T ss_pred CCCCeEEEEECCCCCcHHHHH
Confidence 556678899999999999875
No 61
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=77.35 E-value=0.74 Score=38.53 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=18.4
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..+++|.++ +..++||||||.+
T Consensus 52 ~~i~~i~~~~~~--l~~a~TGsGKT~~ 76 (253)
T 1wrb_A 52 NAIPAILEHRDI--MACAQTGSGKTAA 76 (253)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHHhCCCCE--EEECCCCChHHHH
Confidence 345567788774 4567999999975
No 62
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=76.31 E-value=0.38 Score=41.92 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=28.4
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHhh-hh----CCCceeEeeeeccCCCCceec
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDA-AF----NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~-~l----~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+|+.+.+.+..-+.+.+.+..++... .+ -.....|+-||+.|+|||+.+
T Consensus 11 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 11 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHH
Confidence 3556766655444444444433332111 11 122345788999999999865
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=76.23 E-value=0.73 Score=40.44 Aligned_cols=20 Identities=35% Similarity=0.474 Sum_probs=16.4
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
+....++-||+.|+|||..+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHH
Confidence 34557888999999999976
No 64
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=76.22 E-value=0.35 Score=43.34 Aligned_cols=50 Identities=20% Similarity=0.452 Sum_probs=27.9
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhh-h---hCCCceeEeeeeccCCCCceec
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDA-A---FNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~-~---l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..||.+.+.+..-+.+.+.+..++... + +.+....|+-||++|+|||+.+
T Consensus 81 ~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 81 VNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred CCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 456666654433333433333332211 1 1234456888999999999865
No 65
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=76.11 E-value=0.72 Score=38.44 Aligned_cols=24 Identities=33% Similarity=0.488 Sum_probs=17.6
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.++ +..++||||||.+
T Consensus 59 ~i~~~~~g~~~--l~~apTGsGKT~~ 82 (242)
T 3fe2_A 59 GWPVALSGLDM--VGVAQTGSGKTLS 82 (242)
T ss_dssp HHHHHHHTCCE--EEEECTTSCHHHH
T ss_pred HHHHHhCCCCE--EEECCCcCHHHHH
Confidence 34556778775 4556999999986
No 66
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=75.87 E-value=0.95 Score=40.27 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=19.3
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..+++|.+ ++..++||||||.+
T Consensus 69 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 93 (414)
T 3eiq_A 69 RAILPCIKGYD--VIAQAQSGTGKTAT 93 (414)
T ss_dssp HHHHHHHTTCC--EEECCCSCSSSHHH
T ss_pred HHhHHHhCCCC--EEEECCCCCcccHH
Confidence 34566778888 56678999999986
No 67
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=75.67 E-value=0.38 Score=41.35 Aligned_cols=51 Identities=20% Similarity=0.378 Sum_probs=29.3
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHh-hhhC---CCceeEeeeeccCCCCceec
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLD-AAFN---GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~-~~l~---G~n~~ifaYG~tgSGKTyTm 190 (262)
...|+.+.+.+..-+.+.+.+..++.. ..+. .....++-||++|+|||+.+
T Consensus 17 ~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 17 KVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHH
T ss_pred CCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 456777666544444444443333321 1122 23456888999999999865
No 68
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=75.60 E-value=0.65 Score=38.67 Aligned_cols=26 Identities=27% Similarity=0.363 Sum_probs=18.1
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.++..+.+|.+ ++..|+||||||..+
T Consensus 68 ~~i~~i~~g~~--~~i~g~TGsGKTt~~ 93 (235)
T 3llm_A 68 EILEAISQNSV--VIIRGATGCGKTTQV 93 (235)
T ss_dssp HHHHHHHHCSE--EEEECCTTSSHHHHH
T ss_pred HHHHHHhcCCE--EEEEeCCCCCcHHhH
Confidence 44555666765 456799999999643
No 69
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=75.60 E-value=1 Score=36.91 Aligned_cols=24 Identities=25% Similarity=0.463 Sum_probs=18.0
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.|+ +..++||||||.+
T Consensus 50 ~i~~~~~~~~~--l~~apTGsGKT~~ 73 (228)
T 3iuy_A 50 AWPIILQGIDL--IVVAQTGTGKTLS 73 (228)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHH
Confidence 34556788775 5567999999975
No 70
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=75.57 E-value=0.89 Score=37.55 Aligned_cols=24 Identities=17% Similarity=0.357 Sum_probs=17.7
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.|+ +..++||||||.+
T Consensus 54 ~i~~~~~~~~~--l~~a~TGsGKT~~ 77 (230)
T 2oxc_A 54 AIPLGRCGLDL--IVQAKSGTGKTCV 77 (230)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHhCCCCE--EEECCCCCcHHHH
Confidence 34556778774 4567999999976
No 71
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=74.97 E-value=0.76 Score=40.60 Aligned_cols=45 Identities=22% Similarity=0.242 Sum_probs=26.9
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhhhhCCCce--eEeeeeccCCCCceec
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNV--CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~--~ifaYG~tgSGKTyTm 190 (262)
+.||.+.+ |+.+.+. +..++..+..|... .++-||+.|+|||+..
T Consensus 41 ~~~~~ivG----~~~~~~~-l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 41 QASQGMVG----QLAARRA-AGVVLEMIREGKIAGRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp SEETTEES----CHHHHHH-HHHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred cchhhccC----hHHHHHH-HHHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence 44555553 3333322 22344444455543 7888999999999876
No 72
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=74.95 E-value=0.92 Score=38.18 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=18.0
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..+++|.++ +..++||||||.+.
T Consensus 73 ~i~~i~~~~~~--lv~a~TGsGKT~~~ 97 (249)
T 3ber_A 73 AIPLALQGRDI--IGLAETGSGKTGAF 97 (249)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHhCCCCE--EEEcCCCCCchhHh
Confidence 34556788774 45569999999863
No 73
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=74.91 E-value=0.73 Score=39.16 Aligned_cols=25 Identities=32% Similarity=0.521 Sum_probs=18.7
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..+++|.| ++..++||||||.+
T Consensus 83 ~~i~~~~~~~~--~lv~a~TGsGKT~~ 107 (262)
T 3ly5_A 83 KSIRPLLEGRD--LLAAAKTGSGKTLA 107 (262)
T ss_dssp HHHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred HHHHHHhCCCc--EEEEccCCCCchHH
Confidence 34556677876 56678999999976
No 74
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=74.41 E-value=0.85 Score=40.28 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=23.9
Q ss_pred CCcchhhcccchhhHhhhhCCCc-e--eEeeeeccCCCCceec
Q psy17370 151 TDQTSVFTIIAQPLLDAAFNGYN-V--CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 151 ~~q~~vy~~~~~plv~~~l~G~n-~--~ifaYG~tgSGKTyTm 190 (262)
..+++..+.+. ..+...+.|.. . .++-||+.|+|||..+
T Consensus 20 ~gr~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~ 61 (389)
T 1fnn_A 20 PHREQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL 61 (389)
T ss_dssp TTCHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence 34444444433 34444444432 3 6888999999999976
No 75
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.79 E-value=0.84 Score=42.46 Aligned_cols=90 Identities=16% Similarity=0.232 Sum_probs=48.7
Q ss_pred EEEEEeCCCCccccCCCcceEEEcCCceEE--EEcCCC----------CceeeeeceeeCCCCCcchhhcccchhhHhh-
Q psy17370 101 TVAVRIRPLLVKELHMDVSSIEISPDRREM--KVNDNA----------KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDA- 167 (262)
Q Consensus 101 kV~vRiRP~~~~E~~~~~~~i~~~~~~~~i--~~~~~~----------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~- 167 (262)
+.+|++......+.......+.++.....+ .++... +....+||.|-+-+..-+++.+.+..|+...
T Consensus 126 ~~~v~~~~~~~~~~l~~g~~v~~~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~ 205 (437)
T 4b4t_L 126 RYIVGVRNSVDRSKLKKGVRVTLDITTLTIMRILPRETDPLVYNMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPE 205 (437)
T ss_dssp EEEECBCSSSCTTSCCTTCEEEECSSSCSEEEECCCCSCCCCSSCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHH
T ss_pred EEEEecccccCHhhcCCCceeeEcccchhHHHhcCcccCchhheeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHH
Confidence 456677666655544333444444333322 111111 2223456777666655566666666565432
Q ss_pred hhC--CC--ceeEeeeeccCCCCceec
Q psy17370 168 AFN--GY--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 ~l~--G~--n~~ifaYG~tgSGKTyTm 190 (262)
.+. |. .-.|+-||+.|+|||...
T Consensus 206 ~f~~~g~~~prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 206 IFQRVGIKPPKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp HHHHHCCCCCCEEEEESCTTSSHHHHH
T ss_pred HHHhCCCCCCCeEEEECCCCCcHHHHH
Confidence 332 22 245788999999999754
No 76
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=73.50 E-value=0.9 Score=40.98 Aligned_cols=27 Identities=26% Similarity=0.218 Sum_probs=19.9
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..++.-..+.+.-.|+||||||.+|
T Consensus 114 ~l~~l~~~~~g~i~I~GptGSGKTTlL 140 (356)
T 3jvv_A 114 VFKRVSDVPRGLVLVTGPTGSGKSTTL 140 (356)
T ss_dssp HHHHHHHCSSEEEEEECSTTSCHHHHH
T ss_pred HHHHHHhCCCCEEEEECCCCCCHHHHH
Confidence 445555444557777899999999988
No 77
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=73.03 E-value=0.52 Score=41.63 Aligned_cols=50 Identities=22% Similarity=0.381 Sum_probs=29.1
Q ss_pred eeeceeeCCCCCcchhhcccchhhHh-hhhCCC---ceeEeeeeccCCCCceec
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLD-AAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~-~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
.+|+.|.+.+..-+.+.+.+..|+-. .++.|. ...|+-||+.|+|||+.+
T Consensus 9 ~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 9 VKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHH
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHH
Confidence 35666665554444444444434332 233432 235788999999999865
No 78
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=71.93 E-value=0.68 Score=37.85 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=17.7
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.++ +..++||||||.+
T Consensus 34 ~i~~~~~~~~~--lv~a~TGsGKT~~ 57 (219)
T 1q0u_A 34 IIPGALRGESM--VGQSQTGTGKTHA 57 (219)
T ss_dssp HHHHHHHTCCE--EEECCSSHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHH
Confidence 34556678775 4567999999986
No 79
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=71.87 E-value=1.4 Score=40.47 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=19.8
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..++.|.+..++..|+||||||..
T Consensus 122 ai~~il~~~~~~~l~~a~TGsGKT~~ 147 (479)
T 3fmp_B 122 ALPLMLAEPPQNLIAQSQSGTGKTAA 147 (479)
T ss_dssp HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence 34556777556678899999999976
No 80
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=71.75 E-value=1.2 Score=39.51 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=19.7
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..+++|.+..++..++||||||..
T Consensus 54 ~~i~~~~~~~~~~~lv~apTGsGKT~~ 80 (412)
T 3fht_A 54 NALPLMLAEPPQNLIAQSQSGTGKTAA 80 (412)
T ss_dssp HHHHHHHSSSCCCEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCchHHHH
Confidence 345666777445567778999999986
No 81
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=71.36 E-value=1.7 Score=40.13 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=19.8
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.++..+++|.+. ++..++||||||..
T Consensus 10 ~~i~~~l~~~~~-~lv~a~TGsGKT~~ 35 (451)
T 2jlq_A 10 EVDEDIFRKKRL-TIMDLHPGAGKTKR 35 (451)
T ss_dssp CCCGGGGSTTCE-EEECCCTTSSCCTT
T ss_pred HHHHHHHhcCCe-EEEECCCCCCHhhH
Confidence 345677888775 45669999999986
No 82
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=70.94 E-value=1.2 Score=41.16 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=27.3
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhhhhCCCc--eeEeeeeccCCCCceec
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYN--VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n--~~ifaYG~tgSGKTyTm 190 (262)
+.|+.+. .|+++.+.. ..+++.+..|.. ..++-||++|+|||+..
T Consensus 34 ~~~~~ii----G~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la 80 (456)
T 2c9o_A 34 QAASGLV----GQENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA 80 (456)
T ss_dssp SEETTEE----SCHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred hchhhcc----CHHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence 4455554 455554432 245555555542 24677999999999865
No 83
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=70.70 E-value=1.2 Score=38.81 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=17.1
Q ss_pred hhhCCCceeEeeeeccCCCCceec
Q psy17370 167 AAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 167 ~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..|....++-||+.|+|||+.+
T Consensus 52 ~l~~~~~~~~ll~G~~G~GKT~la 75 (353)
T 1sxj_D 52 TLKSANLPHMLFYGPPGTGKTSTI 75 (353)
T ss_dssp HTTCTTCCCEEEECSTTSSHHHHH
T ss_pred HHhcCCCCEEEEECCCCCCHHHHH
Confidence 334453334788999999999865
No 84
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.55 E-value=1.1 Score=41.59 Aligned_cols=114 Identities=18% Similarity=0.221 Sum_probs=62.6
Q ss_pred eEEEEEeCCCCccccCCCcceEEEcCCceEE--EEcCCC----------CceeeeeceeeCCCCCcchhhcccchhhHhh
Q psy17370 100 MTVAVRIRPLLVKELHMDVSSIEISPDRREM--KVNDNA----------KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDA 167 (262)
Q Consensus 100 IkV~vRiRP~~~~E~~~~~~~i~~~~~~~~i--~~~~~~----------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~ 167 (262)
-+.+|++......+.......+.++.+...+ .++... +...-+||.|-+-+..-+++.+.+..|+...
T Consensus 116 ~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~d~~v~~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p 195 (428)
T 4b4t_K 116 MSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQA 195 (428)
T ss_dssp CEEEECBCSSSCTTTCCTTCEEEECSSSCCEEEEECSCCCCSSCCCEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCH
T ss_pred CEEEEeccccccHhhCCCCceeeeecchhhHHhhcCcccCcchhhccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCH
Confidence 4667777776666554333334444333222 222211 2223466777666655556666555555432
Q ss_pred -hhC--CC--ceeEeeeeccCCCCceec--------------CCCC---CCCchHhhhhhccccccCc
Q psy17370 168 -AFN--GY--NVCLFAYGQTGSGKSYRG--------------DSTL---NSSVLRPRVLFYPGFSWSH 213 (262)
Q Consensus 168 -~l~--G~--n~~ifaYG~tgSGKTyTm--------------~G~~---~~~Giipr~~~~lf~~~~~ 213 (262)
.+. |. .-.|+-||+.|+|||... -|.. ...|--.+.+.++|.....
T Consensus 196 ~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~ 263 (428)
T 4b4t_K 196 DLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARE 263 (428)
T ss_dssp HHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHH
Confidence 232 32 234889999999999654 1111 3456677777777766543
No 85
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=69.98 E-value=1.1 Score=34.32 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=13.9
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..|+-||.+|+|||+..
T Consensus 28 ~~vll~G~~GtGKt~lA 44 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVA 44 (143)
T ss_dssp SCEEEEEETTCCHHHHH
T ss_pred CcEEEECCCCccHHHHH
Confidence 34677999999999865
No 86
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=69.77 E-value=1.4 Score=38.68 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=18.6
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|....++..++||||||..
T Consensus 35 ~i~~~~~~~~~~~lv~a~TGsGKT~~ 60 (395)
T 3pey_A 35 ALPLLLHNPPRNMIAQSQSGTGKTAA 60 (395)
T ss_dssp HHHHHHCSSCCCEEEECCTTSCHHHH
T ss_pred HHHHHHcCCCCeEEEECCCCCcHHHH
Confidence 45566777434466778999999975
No 87
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=69.44 E-value=1 Score=39.74 Aligned_cols=39 Identities=15% Similarity=0.196 Sum_probs=24.6
Q ss_pred CCcchhhcccchhhHhhhhCC-CceeEeeeeccCCCCceec
Q psy17370 151 TDQTSVFTIIAQPLLDAAFNG-YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 151 ~~q~~vy~~~~~plv~~~l~G-~n~~ifaYG~tgSGKTyTm 190 (262)
..+++..+... ..+..++.| ....++-||+.|+|||..+
T Consensus 23 ~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 23 PFREDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp TTCHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence 34444444433 344454444 3457899999999999876
No 88
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=68.60 E-value=1.8 Score=36.25 Aligned_cols=24 Identities=25% Similarity=0.110 Sum_probs=17.5
Q ss_pred HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+..++++.+ ++..|+||+|||+..
T Consensus 102 i~~~~~~~~--~ll~~~tG~GKT~~a 125 (237)
T 2fz4_A 102 LERWLVDKR--GCIVLPTGSGKTHVA 125 (237)
T ss_dssp HHHHTTTSE--EEEEESSSTTHHHHH
T ss_pred HHHHHhCCC--EEEEeCCCCCHHHHH
Confidence 344566665 556789999999975
No 89
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=68.39 E-value=1.4 Score=33.73 Aligned_cols=20 Identities=20% Similarity=0.587 Sum_probs=15.6
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
..+..|+-||.+|+|||+..
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 34455788999999999854
No 90
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=67.70 E-value=1.8 Score=37.09 Aligned_cols=18 Identities=39% Similarity=0.355 Sum_probs=14.4
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...+.-.|++|||||.++
T Consensus 25 g~~v~i~Gp~GsGKSTll 42 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTI 42 (261)
T ss_dssp SEEEEEECSTTCSHHHHH
T ss_pred CCEEEEECCCCccHHHHH
Confidence 345666799999999987
No 91
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=67.46 E-value=2 Score=38.22 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=17.9
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.+ ++..++||||||.+
T Consensus 67 ai~~i~~~~~--~lv~a~TGsGKT~~ 90 (410)
T 2j0s_A 67 AIKQIIKGRD--VIAQSQSGTGKTAT 90 (410)
T ss_dssp HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred HHHHHhCCCC--EEEECCCCCCchHH
Confidence 3455678877 45667999999965
No 92
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=67.27 E-value=1.6 Score=37.37 Aligned_cols=25 Identities=32% Similarity=0.395 Sum_probs=18.0
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..+++|.++ +..++||+|||.+.
T Consensus 24 ~i~~i~~~~~~--lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 24 TIPLMLQGKNV--VVRAKTGSGKTAAY 48 (337)
T ss_dssp HHHHHHTTCCE--EEECCTTSSHHHHH
T ss_pred HHHHHhcCCCE--EEEcCCCCcHHHHH
Confidence 34556778764 45679999999754
No 93
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=67.26 E-value=1.4 Score=38.76 Aligned_cols=22 Identities=32% Similarity=0.389 Sum_probs=16.3
Q ss_pred hCCCceeEeeeeccCCCCceec
Q psy17370 169 FNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-.|.-..++-||+.|+|||+++
T Consensus 42 ~~g~~~~~ll~Gp~G~GKTtla 63 (340)
T 1sxj_C 42 DEGKLPHLLFYGPPGTGKTSTI 63 (340)
T ss_dssp HTTCCCCEEEECSSSSSHHHHH
T ss_pred hcCCCceEEEECCCCCCHHHHH
Confidence 3454333777999999999876
No 94
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=67.17 E-value=1.8 Score=40.45 Aligned_cols=26 Identities=19% Similarity=0.245 Sum_probs=18.8
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.+..++..++||||||.+
T Consensus 149 ai~~i~~~~~~~~ll~apTGsGKT~~ 174 (508)
T 3fho_A 149 ALPLLLSNPPRNMIGQSQSGTGKTAA 174 (508)
T ss_dssp SHHHHHCSSCCCEEEECCSSTTSHHH
T ss_pred HHHHHHcCCCCCEEEECCCCccHHHH
Confidence 34566777334566778999999986
No 95
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=67.14 E-value=2.1 Score=36.70 Aligned_cols=19 Identities=21% Similarity=0.301 Sum_probs=15.7
Q ss_pred CceeEeeeeccCCCCceec
Q psy17370 172 YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm 190 (262)
....++-||++|+|||+..
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3446888999999999876
No 96
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=67.05 E-value=1.1 Score=35.97 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.6
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++-||+.|+|||+.+
T Consensus 46 ~~~ll~G~~G~GKT~l~ 62 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIA 62 (250)
T ss_dssp SEEEEECSTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 36788999999999875
No 97
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=67.01 E-value=2.4 Score=39.03 Aligned_cols=74 Identities=16% Similarity=0.158 Sum_probs=47.4
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHhh-hhC--CC--ceeEeeeeccCCCCceec--------------CCCC---CCC
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDA-AFN--GY--NVCLFAYGQTGSGKSYRG--------------DSTL---NSS 197 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~-~l~--G~--n~~ifaYG~tgSGKTyTm--------------~G~~---~~~ 197 (262)
.-+||.|-+-+..-+++-+.+..|+... ++. |. .-.|+-||+.|+|||... -|.. ...
T Consensus 144 ~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~v 223 (405)
T 4b4t_J 144 DSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYI 223 (405)
T ss_dssp SCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSST
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhcccc
Confidence 3467777777766777777777776533 333 32 245888999999999754 1211 345
Q ss_pred chHhhhhhccccccCc
Q psy17370 198 VLRPRVLFYPGFSWSH 213 (262)
Q Consensus 198 Giipr~~~~lf~~~~~ 213 (262)
|--.+.+.++|.....
T Consensus 224 Gese~~vr~lF~~Ar~ 239 (405)
T 4b4t_J 224 GEGSRMVRELFVMARE 239 (405)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHH
Confidence 6666777777766554
No 98
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=66.82 E-value=1.6 Score=41.42 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=16.7
Q ss_pred hhhCCCceeEeeeeccCCCCceecC
Q psy17370 167 AAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 167 ~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.+.+|.+.++++ ++||||||.+++
T Consensus 193 ~~~~~~~~~ll~-~~TGsGKT~~~~ 216 (590)
T 3h1t_A 193 SVLQGKKRSLIT-MATGTGKTVVAF 216 (590)
T ss_dssp HHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred HHhcCCCceEEE-ecCCCChHHHHH
Confidence 344466555544 899999999863
No 99
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=66.70 E-value=0.32 Score=42.03 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=24.5
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhh-hhCCC-----ceeEeeeeccCCCCceec
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDA-AFNGY-----NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~-~l~G~-----n~~ifaYG~tgSGKTyTm 190 (262)
.+|+.|-+.+.-.+++.+.++.|+-.. ++++. .+ ++-||+.|+|||+.+
T Consensus 7 ~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~G-vlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 7 VTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAG-VLLAGPPGCGKTLLA 61 (274)
T ss_dssp -----CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSE-EEEESSTTSCHHHHH
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCe-EEEECCCCCcHHHHH
Confidence 445555444444444444444444321 22222 22 788999999999764
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=66.67 E-value=2 Score=37.22 Aligned_cols=28 Identities=11% Similarity=0.185 Sum_probs=21.5
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
..+..+++|. ..||+-||+.|+|||+..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a 121 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIA 121 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHH
Confidence 3456677776 447999999999998854
No 101
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=66.34 E-value=1.5 Score=38.87 Aligned_cols=25 Identities=24% Similarity=0.417 Sum_probs=18.0
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..+++|.+ ++..++||||||.+.
T Consensus 51 ~i~~i~~~~~--~li~a~TGsGKT~~~ 75 (400)
T 1s2m_A 51 AIPVAITGRD--ILARAKNGTGKTAAF 75 (400)
T ss_dssp HHHHHHHTCC--EEEECCTTSCHHHHH
T ss_pred HHHHHhcCCC--EEEECCCCcHHHHHH
Confidence 3455667777 456789999999753
No 102
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=66.17 E-value=2 Score=38.51 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=18.4
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..+++|.| ++..++||||||..
T Consensus 28 ~~i~~i~~~~~--~lv~apTGsGKT~~ 52 (414)
T 3oiy_A 28 LWAKRIVQGKS--FTMVAPTGVGKTTF 52 (414)
T ss_dssp HHHHHHTTTCC--EECCSCSSSSHHHH
T ss_pred HHHHHHhcCCC--EEEEeCCCCCHHHH
Confidence 34556678876 45778999999983
No 103
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=65.86 E-value=1.5 Score=36.50 Aligned_cols=18 Identities=22% Similarity=0.331 Sum_probs=15.2
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...|+-||+.|+|||+..
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 445889999999999865
No 104
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=65.82 E-value=2.3 Score=39.47 Aligned_cols=42 Identities=24% Similarity=0.342 Sum_probs=26.7
Q ss_pred CCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 148 GQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 148 ~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+.-..|+.+... .+.|...+-.|.-..++-||++|+|||+..
T Consensus 26 ~~ivGq~~~~~~-~~~L~~~i~~~~~~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 26 AQYIGQQHLLAA-GKPLPRAIEAGHLHSMILWGPPGTGKTTLA 67 (447)
T ss_dssp TTCCSCHHHHST-TSHHHHHHHHTCCCEEEEECSTTSSHHHHH
T ss_pred HHhCCcHHHHhc-hHHHHHHHHcCCCcEEEEECCCCCcHHHHH
Confidence 344556665542 223434444455567889999999999865
No 105
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=65.67 E-value=0.96 Score=40.77 Aligned_cols=52 Identities=27% Similarity=0.436 Sum_probs=29.5
Q ss_pred eeeeeceeeCCCCCcchhhcccchhhHhh-hhC---CCceeEeeeeccCCCCceec
Q psy17370 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDA-AFN---GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~-~l~---G~n~~ifaYG~tgSGKTyTm 190 (262)
..+.||.+.+.+..-+.+.+.+..++... ++. .....|+-||.+|+|||+..
T Consensus 110 ~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 110 TAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHH
T ss_pred CCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHH
Confidence 44567777765444444444333333211 112 22346888999999999865
No 106
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=65.17 E-value=1.1 Score=39.23 Aligned_cols=50 Identities=24% Similarity=0.455 Sum_probs=27.7
Q ss_pred eeeceeeCCCCCcchhhcccchhhHhh-hhCCC---ceeEeeeeccCCCCceec
Q psy17370 141 FKLDHCLGQDTDQTSVFTIIAQPLLDA-AFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 141 f~FD~vf~~~~~q~~vy~~~~~plv~~-~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
.+|+.+.+.+..-+.+.+.+..++... .+.+. ...|+-||+.|+|||+..
T Consensus 15 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 15 VKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHH
T ss_pred CCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHH
Confidence 456666554444444444333332211 22222 245888999999999865
No 107
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=64.26 E-value=2.2 Score=38.53 Aligned_cols=18 Identities=39% Similarity=0.355 Sum_probs=14.9
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...+.-.|+||||||.++
T Consensus 136 g~~i~ivG~~GsGKTTll 153 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTI 153 (372)
T ss_dssp SEEEEEECSSSSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 445667899999999988
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=63.94 E-value=1.7 Score=36.38 Aligned_cols=26 Identities=38% Similarity=0.696 Sum_probs=18.1
Q ss_pred HhhhhCCC--ceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGY--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~--n~~ifaYG~tgSGKTyTm 190 (262)
++.++.|. ..+++-||+.|+|||+..
T Consensus 48 l~~~~~~iPkkn~ili~GPPGtGKTt~a 75 (212)
T 1tue_A 48 LKSFLKGTPKKNCLVFCGPANTGKSYFG 75 (212)
T ss_dssp HHHHHHTCTTCSEEEEESCGGGCHHHHH
T ss_pred HHHHHhcCCcccEEEEECCCCCCHHHHH
Confidence 33444442 246899999999999764
No 109
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=63.58 E-value=1.5 Score=39.23 Aligned_cols=51 Identities=24% Similarity=0.442 Sum_probs=28.9
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHh-hhhCCC---ceeEeeeeccCCCCceec
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLD-AAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~-~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
..+|+.+.+.+..-+.+.+.+..++-. .++.+. ...|+-||+.|+|||+..
T Consensus 47 ~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 47 NVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHH
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHH
Confidence 356777765554444444444333221 223221 234778999999999865
No 110
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=63.05 E-value=1.8 Score=37.46 Aligned_cols=17 Identities=18% Similarity=0.270 Sum_probs=14.5
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++-||+.|+|||+.+
T Consensus 49 ~~~L~~G~~G~GKT~la 65 (324)
T 3u61_B 49 HIILHSPSPGTGKTTVA 65 (324)
T ss_dssp SEEEECSSTTSSHHHHH
T ss_pred eEEEeeCcCCCCHHHHH
Confidence 45788899999999976
No 111
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=62.95 E-value=2.3 Score=37.19 Aligned_cols=15 Identities=47% Similarity=0.851 Sum_probs=13.5
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
++-||+.|+|||+.+
T Consensus 39 ~ll~Gp~G~GKTtl~ 53 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRC 53 (354)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 777999999999976
No 112
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=62.65 E-value=1.3 Score=37.75 Aligned_cols=24 Identities=17% Similarity=0.051 Sum_probs=16.7
Q ss_pred HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+..++++.++.| .++||+|||.+.
T Consensus 122 i~~~l~~~~~ll--~~~tGsGKT~~~ 145 (282)
T 1rif_A 122 VFEGLVNRRRIL--NLPTSAGRSLIQ 145 (282)
T ss_dssp HHHHHHHSEEEE--CCCTTSCHHHHH
T ss_pred HHHHHhcCCeEE--EcCCCCCcHHHH
Confidence 344555555533 789999999876
No 113
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=62.35 E-value=2.3 Score=37.05 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=23.5
Q ss_pred CCcchhhcccchhhHhhhh--CCCceeEeeeeccCCCCceec
Q psy17370 151 TDQTSVFTIIAQPLLDAAF--NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 151 ~~q~~vy~~~~~plv~~~l--~G~n~~ifaYG~tgSGKTyTm 190 (262)
..++.+.+.+. .++..+. .+....|+-||++|+|||+..
T Consensus 32 iG~~~~~~~l~-~~l~~~~~~~~~~~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 32 IGQESIKKNLN-VFIAAAKKRNECLDHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CSCHHHHHHHH-HHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred CChHHHHHHHH-HHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence 34444444422 3444433 233456889999999999865
No 114
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=61.76 E-value=3.3 Score=38.79 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=19.6
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..++.|.+-.++..++||||||.+
T Consensus 101 ~~i~~~l~~~~~~~lv~apTGsGKTl~ 127 (563)
T 3i5x_A 101 KTIKPILSSEDHDVIARAKTGTGKTFA 127 (563)
T ss_dssp HHHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHhcCCCCeEEEECCCCCCccHH
Confidence 345566755455667788999999986
No 115
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=61.76 E-value=3 Score=37.04 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=17.8
Q ss_pred HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+..+++|.++ +..++||||||.+.
T Consensus 46 i~~i~~~~~~--lv~a~TGsGKT~~~ 69 (417)
T 2i4i_A 46 IPIIKEKRDL--MACAQTGSGKTAAF 69 (417)
T ss_dssp HHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHccCCCE--EEEcCCCCHHHHHH
Confidence 4556788875 45679999999753
No 116
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=61.69 E-value=2.2 Score=40.30 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=15.6
Q ss_pred hCCCceeEeeeeccCCCCceec
Q psy17370 169 FNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-.|.+ +.--|+||||||.+|
T Consensus 258 ~~g~~--i~I~GptGSGKTTlL 277 (511)
T 2oap_1 258 EHKFS--AIVVGETASGKTTTL 277 (511)
T ss_dssp HTTCC--EEEEESTTSSHHHHH
T ss_pred hCCCE--EEEECCCCCCHHHHH
Confidence 35666 455799999999976
No 117
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=61.55 E-value=1.7 Score=37.01 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=14.8
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...++-||++|+|||+..
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 346788999999999865
No 118
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=61.47 E-value=1.7 Score=36.39 Aligned_cols=17 Identities=24% Similarity=0.442 Sum_probs=14.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++-||++|+|||+.+
T Consensus 46 ~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CEEEEECCTTSCHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 35889999999999865
No 119
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=61.26 E-value=2 Score=36.72 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=16.2
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|....++-||+.|+|||+..
T Consensus 35 ~~~~~~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 35 RKNIPHLLFSGPPGTGKTATA 55 (319)
T ss_dssp TTCCCCEEEESSSSSSHHHHH
T ss_pred CCCCCeEEEECcCCcCHHHHH
Confidence 344344888999999999865
No 120
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=60.74 E-value=1.8 Score=36.85 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=13.6
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
++-||++|+|||+.+
T Consensus 76 vll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCcChHHHHH
Confidence 788999999999875
No 121
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=60.57 E-value=1.2 Score=41.22 Aligned_cols=51 Identities=22% Similarity=0.371 Sum_probs=27.4
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHh-hhhCC---CceeEeeeeccCCCCceec
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLD-AAFNG---YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~-~~l~G---~n~~ifaYG~tgSGKTyTm 190 (262)
...|+.+.+.+..-+.+.+.+..|+.. .++.| ....|+-||+.|+|||+..
T Consensus 130 ~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 130 NVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHH
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHH
Confidence 455666665443333333333222221 22332 2245788999999999865
No 122
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=60.48 E-value=3.2 Score=37.78 Aligned_cols=23 Identities=35% Similarity=0.505 Sum_probs=17.5
Q ss_pred HhhhhCCCceeEeeeeccCCCCcee
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
+..+++|.++ ++.++||||||..
T Consensus 87 i~~i~~g~d~--i~~a~TGsGKT~a 109 (434)
T 2db3_A 87 IPVISSGRDL--MACAQTGSGKTAA 109 (434)
T ss_dssp HHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHhcCCCE--EEECCCCCCchHH
Confidence 4456788774 5667999999985
No 123
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=60.14 E-value=2.3 Score=37.73 Aligned_cols=25 Identities=24% Similarity=0.445 Sum_probs=18.7
Q ss_pred hhhhCC---CceeEee--eeccCCCCceec
Q psy17370 166 DAAFNG---YNVCLFA--YGQTGSGKSYRG 190 (262)
Q Consensus 166 ~~~l~G---~n~~ifa--YG~tgSGKTyTm 190 (262)
..+..| ....++- ||..|+|||..+
T Consensus 40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence 444555 4557778 999999999876
No 124
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=59.97 E-value=4.1 Score=39.08 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=19.4
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+|..+++|.+ ++..++||+|||.+
T Consensus 51 ~~i~~il~g~d--~lv~~pTGsGKTl~ 75 (591)
T 2v1x_A 51 ETINVTMAGKE--VFLVMPTGGGKSLC 75 (591)
T ss_dssp HHHHHHHTTCC--EEEECCTTSCTTHH
T ss_pred HHHHHHHcCCC--EEEEECCCChHHHH
Confidence 45667788888 55677999999975
No 125
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=59.43 E-value=2.5 Score=36.61 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=17.0
Q ss_pred HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+..+++|.. .++..++||||||.+.
T Consensus 37 i~~~~~~~~-~~l~~~~TGsGKT~~~ 61 (367)
T 1hv8_A 37 IPLFLNDEY-NIVAQARTGSGKTASF 61 (367)
T ss_dssp HHHHHHTCS-EEEEECCSSSSHHHHH
T ss_pred HHHHhCCCC-CEEEECCCCChHHHHH
Confidence 445566632 2456789999999864
No 126
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=59.11 E-value=5.6 Score=36.90 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=61.3
Q ss_pred EEEEEeCCCCccccCCCcceEEEcCCceEE--EEcCCC----------CceeeeeceeeCCCCCcchhhcccchhhHhh-
Q psy17370 101 TVAVRIRPLLVKELHMDVSSIEISPDRREM--KVNDNA----------KSYTFKLDHCLGQDTDQTSVFTIIAQPLLDA- 167 (262)
Q Consensus 101 kV~vRiRP~~~~E~~~~~~~i~~~~~~~~i--~~~~~~----------~~~~f~FD~vf~~~~~q~~vy~~~~~plv~~- 167 (262)
+.+|++......+.......+.++.+...+ .++... +.-.-+||.|=+-+..-+++.+.+..|+...
T Consensus 127 ~~~v~~~~~~~~~~l~~~~~v~l~~~~~~~~~~l~~~~d~~~~~~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe 206 (437)
T 4b4t_I 127 DYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPE 206 (437)
T ss_dssp CCEEECCTTSCGGGCCTTCEEEECTTTCCEEEEECCCSSCCCCCCEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCH
T ss_pred EEEEecccccCHhHccCCcEEEEeccCccceeecCCccCCcceeeeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHH
Confidence 345666666665544333444444433322 122211 2233456666665555556666555555422
Q ss_pred hhC--CC--ceeEeeeeccCCCCceec--------------CCCC---CCCchHhhhhhccccccCc
Q psy17370 168 AFN--GY--NVCLFAYGQTGSGKSYRG--------------DSTL---NSSVLRPRVLFYPGFSWSH 213 (262)
Q Consensus 168 ~l~--G~--n~~ifaYG~tgSGKTyTm--------------~G~~---~~~Giipr~~~~lf~~~~~ 213 (262)
.+. |. ---|+-||+.|+|||... -|.. ...|--.+.+..+|.....
T Consensus 207 ~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~ 273 (437)
T 4b4t_I 207 LYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGE 273 (437)
T ss_dssp HHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHH
T ss_pred HHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHh
Confidence 332 32 345889999999999643 2221 4456677777777766554
No 127
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=59.06 E-value=2.9 Score=38.61 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=18.4
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..+++|.|+ +..++||||||.+.
T Consensus 15 ~i~~~~~~~~~--l~~~~tGsGKT~~~ 39 (556)
T 4a2p_A 15 LAQPAINGKNA--LICAPTGSGKTFVS 39 (556)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHcCCCE--EEEcCCCChHHHHH
Confidence 45566788774 45679999999763
No 128
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=59.00 E-value=3.4 Score=35.67 Aligned_cols=17 Identities=35% Similarity=0.466 Sum_probs=13.8
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..|+-.|+.|||||...
T Consensus 34 ~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp EEEEEECCTTSCTHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45778899999998753
No 129
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=58.73 E-value=2.1 Score=36.66 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=16.2
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|....++-||+.|+|||+..
T Consensus 43 ~~~~~~~ll~G~~G~GKT~la 63 (327)
T 1iqp_A 43 TGSMPHLLFAGPPGVGKTTAA 63 (327)
T ss_dssp HTCCCEEEEESCTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 344334888999999999876
No 130
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=57.27 E-value=3.5 Score=34.64 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=20.6
Q ss_pred hhhcccchhhHhhhhCCC-ceeEeeeeccCCCCcee
Q psy17370 155 SVFTIIAQPLLDAAFNGY-NVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 155 ~vy~~~~~plv~~~l~G~-n~~ifaYG~tgSGKTyT 189 (262)
.+|+.+...++.....+. ...|+-.|+.|||||..
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTl 48 (253)
T 2p5t_B 13 HALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTI 48 (253)
T ss_dssp HHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHH
T ss_pred HHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHH
Confidence 344444444443333322 34577889999999874
No 131
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=57.15 E-value=4.1 Score=35.70 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=18.5
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+..+++|.++ +..++||+|||...
T Consensus 37 ~~i~~~~~~~~~--lv~a~TGsGKT~~~ 62 (391)
T 1xti_A 37 ECIPQAILGMDV--LCQAKSGMGKTAVF 62 (391)
T ss_dssp HHHHHHTTTCCE--EEECSSCSSHHHHH
T ss_pred HHHHHHhcCCcE--EEECCCCCcHHHHH
Confidence 345567778774 45579999999864
No 132
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=57.04 E-value=3.2 Score=35.66 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.3
Q ss_pred CceeEeeeeccCCCCceec
Q psy17370 172 YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm 190 (262)
....++-||++|+|||+..
T Consensus 37 ~~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCCEEECCTTCCCHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3456778999999999865
No 133
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=56.96 E-value=2.7 Score=40.64 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=17.2
Q ss_pred HhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
|..+|.....+ +-.|+.|||||+|+.
T Consensus 198 V~~al~~~~~~-lI~GPPGTGKT~ti~ 223 (646)
T 4b3f_X 198 VLFALSQKELA-IIHGPPGTGKTTTVV 223 (646)
T ss_dssp HHHHHHCSSEE-EEECCTTSCHHHHHH
T ss_pred HHHHhcCCCce-EEECCCCCCHHHHHH
Confidence 44455433333 456999999999973
No 134
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=56.21 E-value=3.5 Score=37.94 Aligned_cols=24 Identities=33% Similarity=0.430 Sum_probs=17.8
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.++ +..++||||||.+
T Consensus 12 ~i~~~~~~~~~--l~~~~tGsGKT~~ 35 (555)
T 3tbk_A 12 LALPAKKGKNT--IICAPTGCGKTFV 35 (555)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred HHHHHhCCCCE--EEEeCCCChHHHH
Confidence 34566788774 4567999999976
No 135
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=55.70 E-value=2 Score=37.74 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=17.7
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.+..+++|.++ +..++||+|||.+
T Consensus 51 ~i~~i~~~~~~--lv~~~TGsGKT~~ 74 (394)
T 1fuu_A 51 AIMPIIEGHDV--LAQAQSGTGKTGT 74 (394)
T ss_dssp HHHHHHHTCCE--EECCCSSHHHHHH
T ss_pred HHHHHhCCCCE--EEECCCCChHHHH
Confidence 34556778774 4567999999986
No 136
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=55.47 E-value=3.7 Score=33.78 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=18.2
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+++.+-.|.-.+| .|++|||||..+
T Consensus 14 ~~l~~i~~Ge~~~l--iG~nGsGKSTLl 39 (208)
T 3b85_A 14 HYVDAIDTNTIVFG--LGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHHCSEEEE--ECCTTSSTTHHH
T ss_pred HHHHhccCCCEEEE--ECCCCCCHHHHH
Confidence 34555555665444 799999999866
No 137
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=55.22 E-value=3.7 Score=37.50 Aligned_cols=25 Identities=24% Similarity=0.090 Sum_probs=17.7
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..++++.+ ++..+.||+|||...
T Consensus 101 ai~~i~~~~~--~ll~~~TGsGKT~~~ 125 (472)
T 2fwr_A 101 ALERWLVDKR--GCIVLPTGSGKTHVA 125 (472)
T ss_dssp HHHHHTTTTE--EEEECCTTSCHHHHH
T ss_pred HHHHHHhcCC--EEEEeCCCCCHHHHH
Confidence 3445666655 455689999999975
No 138
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=54.79 E-value=1.7 Score=37.89 Aligned_cols=16 Identities=19% Similarity=0.231 Sum_probs=13.6
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||+.|+|||+.+
T Consensus 48 ~vll~G~pGtGKT~la 63 (331)
T 2r44_A 48 HILLEGVPGLAKTLSV 63 (331)
T ss_dssp CEEEESCCCHHHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 4677999999999865
No 139
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=54.34 E-value=5.2 Score=37.84 Aligned_cols=27 Identities=19% Similarity=0.375 Sum_probs=19.1
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..|..++.|.+--++..++||||||.+
T Consensus 50 ~~i~~il~~~~~dvlv~apTGsGKTl~ 76 (579)
T 3sqw_A 50 KTIKPILSSEDHDVIARAKTGTGKTFA 76 (579)
T ss_dssp HHHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred HHHHHHHccCCCeEEEEcCCCcHHHHH
Confidence 345666754444567788999999985
No 140
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=53.45 E-value=2.8 Score=36.90 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=13.3
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||++|+|||+.+
T Consensus 53 ~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 53 HVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CEEEESSTTSSHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3566999999999865
No 141
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=53.44 E-value=2.7 Score=39.48 Aligned_cols=19 Identities=26% Similarity=0.482 Sum_probs=15.6
Q ss_pred CceeEeeeeccCCCCceec
Q psy17370 172 YNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 172 ~n~~ifaYG~tgSGKTyTm 190 (262)
....|+-||++|+|||+..
T Consensus 237 ~~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCCEEEEECSTTSSHHHHH
T ss_pred CCCcEEEECcCCCCHHHHH
Confidence 3456888999999999865
No 142
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=53.34 E-value=3.6 Score=35.09 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=15.8
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|....++-||+.|+|||+..
T Consensus 39 ~~~~~~~ll~G~~G~GKt~la 59 (323)
T 1sxj_B 39 DGNMPHMIISGMPGIGKTTSV 59 (323)
T ss_dssp SCCCCCEEEECSTTSSHHHHH
T ss_pred cCCCCeEEEECcCCCCHHHHH
Confidence 444333888999999999865
No 143
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=52.76 E-value=4.5 Score=39.34 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=27.9
Q ss_pred eCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 147 LGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 147 f~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
|.+...|..-++. +++.+-.|... ..-.|.|||||||+|.
T Consensus 7 ~~~~~~q~~ai~~----l~~~~~~~~~~-~~l~g~tgs~kt~~~a 46 (664)
T 1c4o_A 7 PSPKGDQPKAIAG----LVEALRDGERF-VTLLGATGTGKTVTMA 46 (664)
T ss_dssp CCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred CCCCCCChHHHHH----HHHHHhcCCCc-EEEEcCCCcHHHHHHH
Confidence 4788888776554 45555566532 3356999999999994
No 144
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=52.70 E-value=1 Score=42.31 Aligned_cols=74 Identities=16% Similarity=0.147 Sum_probs=44.4
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHhh-hhC--C--CceeEeeeeccCCCCceec--------------CCCC---CCC
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDA-AFN--G--YNVCLFAYGQTGSGKSYRG--------------DSTL---NSS 197 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~-~l~--G--~n~~ifaYG~tgSGKTyTm--------------~G~~---~~~ 197 (262)
.-+||.|-+-+..-+++.+.+..|+... .+. | .--.|+-||+.|+|||... -|.. ...
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~v 284 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYV 284 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSS
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccC
Confidence 3567777666665666666655555432 333 3 2345889999999999743 1111 345
Q ss_pred chHhhhhhccccccCc
Q psy17370 198 VLRPRVLFYPGFSWSH 213 (262)
Q Consensus 198 Giipr~~~~lf~~~~~ 213 (262)
|--.+.+.++|.....
T Consensus 285 Gesek~ir~lF~~Ar~ 300 (467)
T 4b4t_H 285 GEGARMVRELFEMART 300 (467)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 6666667776665543
No 145
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=52.69 E-value=3.3 Score=35.31 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.8
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++-+|++|+|||+..
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 57888999999999865
No 146
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=52.54 E-value=5.1 Score=38.50 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=18.3
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..+..+++|.|+ +..++||+|||..
T Consensus 20 ~~i~~~l~g~~~--iv~~~TGsGKTl~ 44 (696)
T 2ykg_A 20 ELALPAMKGKNT--IICAPTGCGKTFV 44 (696)
T ss_dssp HHHHHHHTTCCE--EEECCTTSSHHHH
T ss_pred HHHHHHHcCCCE--EEEcCCCchHHHH
Confidence 345566788874 4567999999984
No 147
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=50.74 E-value=5.3 Score=38.37 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=19.1
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+..+++|.+ ++..++||+|||.+.
T Consensus 14 ~~i~~il~g~~--~ll~~~TGsGKTl~~ 39 (699)
T 4gl2_A 14 EVAQPALEGKN--IIICLPTGCGKTRVA 39 (699)
T ss_dssp HHHHHHHSSCC--EEECCCTTSCHHHHH
T ss_pred HHHHHHHhCCC--EEEEcCCCCcHHHHH
Confidence 34566777877 455689999999864
No 148
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=50.58 E-value=4.7 Score=36.06 Aligned_cols=21 Identities=29% Similarity=0.251 Sum_probs=15.3
Q ss_pred hhCCCceeEeeeeccCCCCceec
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+-.|.+..| -|.||||||.++
T Consensus 172 i~~G~~i~i--vG~sGsGKSTll 192 (361)
T 2gza_A 172 VQLERVIVV--AGETGSGKTTLM 192 (361)
T ss_dssp HHTTCCEEE--EESSSSCHHHHH
T ss_pred HhcCCEEEE--ECCCCCCHHHHH
Confidence 335665444 499999999876
No 149
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=50.34 E-value=5 Score=32.66 Aligned_cols=28 Identities=21% Similarity=0.220 Sum_probs=19.9
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.|. ...+.-+|.+|+|||..+
T Consensus 11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~ 41 (243)
T 1n0w_A 11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC 41 (243)
T ss_dssp HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence 5567777542 334566899999999865
No 150
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=49.85 E-value=3.7 Score=32.26 Aligned_cols=16 Identities=38% Similarity=0.522 Sum_probs=12.9
Q ss_pred EeeeeccCCCCceecC
Q psy17370 176 LFAYGQTGSGKSYRGD 191 (262)
Q Consensus 176 ifaYG~tgSGKTyTm~ 191 (262)
+.-.|.+|||||..+-
T Consensus 12 ~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 12 VVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEECCTTSCHHHHHH
T ss_pred EEEECCCCCCHHHHHH
Confidence 4456999999999774
No 151
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=49.71 E-value=3.5 Score=36.96 Aligned_cols=16 Identities=25% Similarity=0.453 Sum_probs=13.3
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
-++-.|.+|||||++|
T Consensus 37 ~~~i~G~~G~GKs~~~ 52 (392)
T 4ag6_A 37 NWTILAKPGAGKSFTA 52 (392)
T ss_dssp CEEEECCTTSSHHHHH
T ss_pred ceEEEcCCCCCHHHHH
Confidence 3556799999999987
No 152
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=49.53 E-value=3.7 Score=39.49 Aligned_cols=17 Identities=24% Similarity=0.235 Sum_probs=14.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++..|.+|||||+++
T Consensus 165 ~~~vi~G~pGTGKTt~l 181 (608)
T 1w36_D 165 RISVISGGPGTGKTTTV 181 (608)
T ss_dssp SEEEEECCTTSTHHHHH
T ss_pred CCEEEEeCCCCCHHHHH
Confidence 45678899999999886
No 153
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=49.27 E-value=3.6 Score=37.39 Aligned_cols=18 Identities=39% Similarity=0.405 Sum_probs=15.0
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
+.-++..|.||||||.++
T Consensus 53 ~~h~~i~G~tGsGKs~~~ 70 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLL 70 (437)
T ss_dssp GGCEEEEECTTSSHHHHH
T ss_pred cceEEEECCCCCCHHHHH
Confidence 455678899999999987
No 154
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=48.99 E-value=6.1 Score=36.59 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=18.2
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
++..+..+....++-||..|+|||+..
T Consensus 192 l~~~l~r~~~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHhccCCCCeEEECCCCCCHHHHH
Confidence 333333344445677999999999876
No 155
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=48.73 E-value=5.5 Score=32.56 Aligned_cols=15 Identities=33% Similarity=0.525 Sum_probs=12.1
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-.|++|||||..+
T Consensus 33 ~~l~GpnGsGKSTLl 47 (251)
T 2ehv_A 33 VLLTGGTGTGKTTFA 47 (251)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 344799999999876
No 156
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=48.62 E-value=4.7 Score=35.03 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=16.0
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
..+..|+-||.+|+|||+..
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp STTSCEEEESCTTSCHHHHH
T ss_pred CCCCcEEEECCCCchHHHHH
Confidence 34567888999999999854
No 157
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=48.58 E-value=4.8 Score=35.86 Aligned_cols=24 Identities=21% Similarity=0.187 Sum_probs=16.7
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..+++| + ++..++||+|||...
T Consensus 17 ~i~~~~~~-~--~ll~~~tG~GKT~~~ 40 (494)
T 1wp9_A 17 IYAKCKET-N--CLIVLPTGLGKTLIA 40 (494)
T ss_dssp HHHHGGGS-C--EEEECCTTSCHHHHH
T ss_pred HHHHHhhC-C--EEEEcCCCCCHHHHH
Confidence 34556666 3 345679999999876
No 158
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=47.71 E-value=6.4 Score=31.60 Aligned_cols=28 Identities=21% Similarity=0.332 Sum_probs=17.5
Q ss_pred hhHhhhhC-CC--ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFN-GY--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~-G~--n~~ifaYG~tgSGKTyTm 190 (262)
+-++.++. |. ...+.-+|.+|+|||..+
T Consensus 10 ~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 10 LDFDKLIQGGIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp HHHHGGGTTSEETTCEEEEECSTTSSHHHHH
T ss_pred hHHHHHhcCCCcCCCEEEEEcCCCCCHHHHH
Confidence 34455554 22 223455799999999765
No 159
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=47.53 E-value=5 Score=30.49 Aligned_cols=16 Identities=38% Similarity=0.484 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||.-.
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3667899999999743
No 160
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=46.92 E-value=6 Score=31.78 Aligned_cols=17 Identities=29% Similarity=0.245 Sum_probs=13.6
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..|.-.|..|||||..+
T Consensus 23 ~~i~i~G~~GsGKstl~ 39 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLA 39 (201)
T ss_dssp EEEEEEECTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45667799999999864
No 161
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=46.68 E-value=4.1 Score=34.44 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.8
Q ss_pred eeEeeeeccCCCCceecC
Q psy17370 174 VCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm~ 191 (262)
..||..|..|+||||+|.
T Consensus 7 l~I~~~~kgGvGKTt~a~ 24 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAML 24 (228)
T ss_dssp EEEEEESSTTSSHHHHHH
T ss_pred EEEEEECCCCCcHHHHHH
Confidence 468899999999999974
No 162
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=46.58 E-value=4.9 Score=35.68 Aligned_cols=18 Identities=33% Similarity=0.532 Sum_probs=14.8
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...++-||++|+|||+..
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 346888999999999864
No 163
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=46.01 E-value=4.6 Score=37.98 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=19.1
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..|..+++|.++.+ .++||+|||.+.
T Consensus 32 ~~i~~il~g~d~lv--~apTGsGKTl~~ 57 (523)
T 1oyw_A 32 EIIDTVLSGRDCLV--VMPTGGGKSLCY 57 (523)
T ss_dssp HHHHHHHTTCCEEE--ECSCHHHHHHHH
T ss_pred HHHHHHHcCCCEEE--ECCCCcHHHHHH
Confidence 45666788887544 569999999743
No 164
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=45.85 E-value=5.3 Score=37.41 Aligned_cols=17 Identities=29% Similarity=0.513 Sum_probs=14.8
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++-||+.|+|||+.+
T Consensus 78 ~~lLL~GppGtGKTtla 94 (516)
T 1sxj_A 78 RAAMLYGPPGIGKTTAA 94 (516)
T ss_dssp SEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 46788999999999876
No 165
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=45.37 E-value=7.8 Score=31.15 Aligned_cols=28 Identities=29% Similarity=0.420 Sum_probs=18.7
Q ss_pred hhHhhhhCC-C--ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNG-Y--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G-~--n~~ifaYG~tgSGKTyTm 190 (262)
+-++.++.| . .-.+.-.|++|||||..+
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll 42 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 42 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHH
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHH
Confidence 455666643 2 234556799999999865
No 166
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=45.31 E-value=8.5 Score=39.35 Aligned_cols=25 Identities=20% Similarity=0.234 Sum_probs=18.4
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
..|..+++|.+ ++..++||||||..
T Consensus 46 ~aI~~il~g~~--vlv~apTGsGKTlv 70 (997)
T 4a4z_A 46 EAVYHLEQGDS--VFVAAHTSAGKTVV 70 (997)
T ss_dssp HHHHHHHTTCE--EEEECCTTSCSHHH
T ss_pred HHHHHHHcCCC--EEEEECCCCcHHHH
Confidence 34556677865 56788999999953
No 167
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=45.24 E-value=6.5 Score=34.31 Aligned_cols=17 Identities=24% Similarity=0.311 Sum_probs=14.5
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++-||+.|+|||..+
T Consensus 39 ~~~ll~G~~G~GKT~la 55 (373)
T 1jr3_A 39 HAYLFSGTRGVGKTSIA 55 (373)
T ss_dssp SEEEEESCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45788999999999875
No 168
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=44.84 E-value=4.4 Score=40.55 Aligned_cols=28 Identities=14% Similarity=0.146 Sum_probs=19.4
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+++.+..+....++-||..|+|||+.+
T Consensus 181 ~l~~~l~~~~~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 181 RVIQILLRRTKNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp HHHHHHHCSSCCCCEEEECTTSCHHHHH
T ss_pred HHHHHHhcCCCCceEEEcCCCCCHHHHH
Confidence 3444444455445677999999999876
No 169
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=44.81 E-value=6.2 Score=31.83 Aligned_cols=16 Identities=38% Similarity=0.387 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|.+|||||..+
T Consensus 24 ~v~I~G~sGsGKSTl~ 39 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLS 39 (208)
T ss_dssp EEEEECCTTSCTHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4445699999999855
No 170
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=44.65 E-value=5.5 Score=35.22 Aligned_cols=18 Identities=33% Similarity=0.523 Sum_probs=14.5
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...|+-||++|+|||+..
T Consensus 51 ~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 345777999999999864
No 171
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=44.49 E-value=7.7 Score=35.50 Aligned_cols=21 Identities=24% Similarity=0.194 Sum_probs=15.8
Q ss_pred hhCCCceeEeeeeccCCCCceec
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+++|.|+ +..|+||||||...
T Consensus 5 l~~g~~v--lv~a~TGSGKT~~~ 25 (440)
T 1yks_A 5 LKKGMTT--VLDFHPGAGKTRRF 25 (440)
T ss_dssp TSTTCEE--EECCCTTSSTTTTH
T ss_pred hhCCCCE--EEEcCCCCCHHHHH
Confidence 4567764 45689999999973
No 172
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=44.11 E-value=8.6 Score=39.52 Aligned_cols=24 Identities=21% Similarity=0.145 Sum_probs=17.6
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCce
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTy 188 (262)
..+..+++|.|+ +..++||||||.
T Consensus 63 ~ai~~il~g~dv--lv~apTGSGKTl 86 (1054)
T 1gku_B 63 MWAKRILRKESF--AATAPTGVGKTS 86 (1054)
T ss_dssp HHHHHHHTTCCE--ECCCCBTSCSHH
T ss_pred HHHHHHHhCCCE--EEEcCCCCCHHH
Confidence 344566788764 567899999994
No 173
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=43.98 E-value=6.2 Score=36.27 Aligned_cols=36 Identities=19% Similarity=0.242 Sum_probs=22.9
Q ss_pred CCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 150 DTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 150 ~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+..|.+.++.+. ..+.++. ..++-.|..|||||+++
T Consensus 27 n~~Q~~av~~~~----~~i~~~~-~~~li~G~aGTGKT~ll 62 (459)
T 3upu_A 27 TEGQKNAFNIVM----KAIKEKK-HHVTINGPAGTGATTLT 62 (459)
T ss_dssp CHHHHHHHHHHH----HHHHSSS-CEEEEECCTTSCHHHHH
T ss_pred CHHHHHHHHHHH----HHHhcCC-CEEEEEeCCCCCHHHHH
Confidence 345666655433 2223333 36788899999999876
No 174
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=43.96 E-value=7.3 Score=37.84 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=33.5
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHhhhhCCCceeEeeeeccCCCCceecC
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~l~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.|....-|.|...|..-++. +++.+-+|... ..-.|.|||||||+|-
T Consensus 4 ~~~~~~~~~p~~~Q~~~i~~----l~~~~~~~~~~-~~l~g~~gs~k~~~~a 50 (661)
T 2d7d_A 4 RFELVSKYQPQGDQPKAIEK----LVKGIQEGKKH-QTLLGATGTGKTFTVS 50 (661)
T ss_dssp CCCCCCSCCCCTTHHHHHHH----HHHHHHTTCSE-EEEEECTTSCHHHHHH
T ss_pred cceeecCCCCCCCCHHHHHH----HHHHHhcCCCc-EEEECcCCcHHHHHHH
Confidence 36666678899999887654 45555566432 3446999999999994
No 175
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=42.75 E-value=6.2 Score=30.78 Aligned_cols=16 Identities=31% Similarity=0.542 Sum_probs=13.3
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||+..
T Consensus 13 ~i~i~G~~GsGKst~~ 28 (180)
T 3iij_A 13 NILLTGTPGVGKTTLG 28 (180)
T ss_dssp CEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCCCHHHHH
Confidence 4677899999999854
No 176
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=42.59 E-value=6.7 Score=30.20 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=12.5
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 4 ~I~i~G~~GsGKST~ 18 (181)
T 1ly1_A 4 IILTIGCPGSGKSTW 18 (181)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEecCCCCCHHHH
Confidence 467789999999974
No 177
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=42.57 E-value=6.1 Score=38.89 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=18.9
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
++.|.||+--|.+|+|||.+.
T Consensus 91 ~~~nQsIiisGESGAGKTe~t 111 (697)
T 1lkx_A 91 SQENQCVIISGESGAGKTEAS 111 (697)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEecCCCCCCchhhH
Confidence 589999999999999999753
No 178
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=42.23 E-value=7.8 Score=38.27 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=18.3
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..+++|.|+ +..++||||||.+.
T Consensus 256 ~i~~~l~~~~~--ll~~~TGsGKTl~~ 280 (797)
T 4a2q_A 256 LAQPAINGKNA--LICAPTGSGKTFVS 280 (797)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHhCCCE--EEEeCCCChHHHHH
Confidence 44566788774 45679999999763
No 179
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=42.13 E-value=9.5 Score=36.77 Aligned_cols=23 Identities=22% Similarity=0.096 Sum_probs=18.2
Q ss_pred HhhhhCCCceeEeeeeccCCCCcee
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
+..+++|.++ +..++||||||..
T Consensus 180 i~~l~~g~dv--lv~a~TGSGKT~~ 202 (618)
T 2whx_A 180 EDIFRKKRLT--IMDLHPGAGKTKR 202 (618)
T ss_dssp GGGGSTTCEE--EECCCTTSSTTTT
T ss_pred HHHHhcCCeE--EEEcCCCCCHHHH
Confidence 5667788875 4567999999987
No 180
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=42.05 E-value=7.8 Score=37.70 Aligned_cols=21 Identities=29% Similarity=0.294 Sum_probs=15.2
Q ss_pred hhCCCceeEeeeeccCCCCceec
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+++|.| ++..|+||||||...
T Consensus 36 ~~~~~~--~lv~apTGsGKT~~~ 56 (720)
T 2zj8_A 36 ILEGKN--ALISIPTASGKTLIA 56 (720)
T ss_dssp GGGTCE--EEEECCGGGCHHHHH
T ss_pred hcCCCc--EEEEcCCccHHHHHH
Confidence 345655 566789999999654
No 181
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=41.59 E-value=7.1 Score=30.20 Aligned_cols=16 Identities=25% Similarity=0.235 Sum_probs=13.2
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||...
T Consensus 5 ~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIV 20 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5778899999998753
No 182
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=41.46 E-value=7.3 Score=37.48 Aligned_cols=24 Identities=17% Similarity=0.332 Sum_probs=16.6
Q ss_pred HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
|..++.+ ..++-.|+.|+|||+|+
T Consensus 189 v~~~l~~--~~~li~GppGTGKT~~~ 212 (624)
T 2gk6_A 189 VKTVLQR--PLSLIQGPPGTGKTVTS 212 (624)
T ss_dssp HHHHHTC--SEEEEECCTTSCHHHHH
T ss_pred HHHHhcC--CCeEEECCCCCCHHHHH
Confidence 3444442 24556899999999986
No 183
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=41.43 E-value=7.2 Score=30.44 Aligned_cols=16 Identities=31% Similarity=0.632 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||..-
T Consensus 7 ~i~l~G~~GsGKst~a 22 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVG 22 (185)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999743
No 184
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=41.40 E-value=6 Score=31.38 Aligned_cols=15 Identities=20% Similarity=0.306 Sum_probs=11.6
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-.|++|||||..+
T Consensus 10 i~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 10 FIISAPSGAGKTSLV 24 (205)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECcCCCCHHHHH
Confidence 334599999999865
No 185
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=41.15 E-value=7.7 Score=39.25 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=18.3
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..+++|.|+ +..++||||||.+.
T Consensus 256 ai~~il~g~~~--ll~a~TGsGKTl~~ 280 (936)
T 4a2w_A 256 LAQPAINGKNA--LICAPTGSGKTFVS 280 (936)
T ss_dssp HHHHHHTTCCE--EEECCTTSCHHHHH
T ss_pred HHHHHHcCCCE--EEEeCCCchHHHHH
Confidence 34556788774 45679999999864
No 186
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=41.10 E-value=5.7 Score=31.67 Aligned_cols=14 Identities=29% Similarity=0.387 Sum_probs=11.8
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
.-.|++|+|||..+
T Consensus 4 ~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 4 IITGEPGVGKTTLV 17 (178)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34799999999976
No 187
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=40.68 E-value=6.8 Score=33.98 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=17.3
Q ss_pred hhhCCCceeEeeeeccCCCCceec---CCC
Q psy17370 167 AAFNGYNVCLFAYGQTGSGKSYRG---DST 193 (262)
Q Consensus 167 ~~l~G~n~~ifaYG~tgSGKTyTm---~G~ 193 (262)
.+++|.+..|.-.|.+|+|||..| +|.
T Consensus 12 ~~l~~~~~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 12 SVKKGFEFTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp ------CEEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEcCCCEEEEEECCCCCCHHHHHHHHhCC
Confidence 367888888988999999999855 564
No 188
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=40.59 E-value=7.2 Score=35.83 Aligned_cols=28 Identities=29% Similarity=0.294 Sum_probs=21.7
Q ss_pred hhhCCCceeEeeeeccCCCCceec---CCCC
Q psy17370 167 AAFNGYNVCLFAYGQTGSGKSYRG---DSTL 194 (262)
Q Consensus 167 ~~l~G~n~~ifaYG~tgSGKTyTm---~G~~ 194 (262)
.+++|.+..|.-.|.+|+|||..| .|..
T Consensus 25 ~vl~~vsf~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 25 SVKRGFEFTLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp TCC-CCCEEEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEecCCCEEEEEECCCCCcHHHHHHHHhCCC
Confidence 368888888988999999999855 5543
No 189
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=40.50 E-value=7.6 Score=38.02 Aligned_cols=27 Identities=15% Similarity=0.186 Sum_probs=18.6
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+++.+.......++-||.+|+|||+.+
T Consensus 198 l~~~l~~~~~~~vlL~G~~GtGKT~la 224 (758)
T 1r6b_X 198 AIQVLCRRRKNNPLLVGESGVGKTAIA 224 (758)
T ss_dssp HHHHHTSSSSCEEEEECCTTSSHHHHH
T ss_pred HHHHHhccCCCCeEEEcCCCCCHHHHH
Confidence 334333444455677999999999876
No 190
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=40.49 E-value=6.5 Score=30.81 Aligned_cols=16 Identities=44% Similarity=0.557 Sum_probs=12.9
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|..|||||..+
T Consensus 11 ~i~l~G~~GsGKSTl~ 26 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIA 26 (191)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4566799999999865
No 191
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=40.27 E-value=11 Score=29.93 Aligned_cols=28 Identities=32% Similarity=0.491 Sum_probs=19.4
Q ss_pred hhHhhhhC-CC--ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFN-GY--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~-G~--n~~ifaYG~tgSGKTyTm 190 (262)
+-++.++. |. ...+.-+|.+|+|||..+
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~ 37 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLA 37 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHH
Confidence 44566665 33 235677899999999754
No 192
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=40.10 E-value=7.4 Score=34.01 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.+.-.|++|||||.++
T Consensus 104 vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTI 119 (304)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCcHHHHH
Confidence 3444599999999977
No 193
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=40.07 E-value=6.9 Score=39.01 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=18.8
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
++.|.||+--|.+|+|||.+.
T Consensus 137 ~~~nQsIiiSGESGAGKTe~t 157 (784)
T 2v26_A 137 LKLSQSIIVSGESGAGKTENT 157 (784)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCcEEEEcCCCCCCceehH
Confidence 589999999999999999653
No 194
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=39.99 E-value=7.5 Score=33.75 Aligned_cols=16 Identities=31% Similarity=0.586 Sum_probs=12.8
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.+.-.|.+|+|||.++
T Consensus 107 vi~lvG~~GsGKTTl~ 122 (296)
T 2px0_A 107 YIVLFGSTGAGKTTTL 122 (296)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4445699999999987
No 195
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=39.76 E-value=7.1 Score=38.85 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.9
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
++.|.||+--|.+|+|||.+.
T Consensus 169 ~~~nQsIiisGESGAGKTe~t 189 (770)
T 1w9i_A 169 DRQNQSLLITGESGAGKTENT 189 (770)
T ss_dssp HCCCEEEEEECSTTSSHHHHH
T ss_pred hcCCcEEEEecCCCCcchHHH
Confidence 589999999999999999753
No 196
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=39.76 E-value=7.7 Score=36.90 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=15.5
Q ss_pred ceeEeeeeccCCCCceecC
Q psy17370 173 NVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~ 191 (262)
++.++-.|..|||||+++.
T Consensus 22 ~~~~lV~a~aGsGKT~~l~ 40 (647)
T 3lfu_A 22 RSNLLVLAGAGSGKTRVLV 40 (647)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEECCCCCHHHHHH
Confidence 4456778999999999984
No 197
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=39.66 E-value=13 Score=30.15 Aligned_cols=28 Identities=25% Similarity=0.458 Sum_probs=18.5
Q ss_pred hhHhhhhCC-C--ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNG-Y--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G-~--n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.| . ...+.-+|.+|+|||..+
T Consensus 10 ~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~ 40 (247)
T 2dr3_A 10 PGVDEILHGGIPERNVVLLSGGPGTGKTIFS 40 (247)
T ss_dssp TTHHHHTTTSEETTCEEEEEECTTSSHHHHH
T ss_pred hhHHHHcCCCCCCCcEEEEECCCCCCHHHHH
Confidence 345566543 2 234566899999999874
No 198
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=39.54 E-value=7.3 Score=38.82 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=31.4
Q ss_pred eeeeeceeeCCCCCcchhhcccchhhHhh-hhC----CCceeEeeeeccCCCCceec
Q psy17370 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDA-AFN----GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 139 ~~f~FD~vf~~~~~q~~vy~~~~~plv~~-~l~----G~n~~ifaYG~tgSGKTyTm 190 (262)
..+.||.+-+.+..-+.+.+.+..++... +++ .....|+-||++|+|||..+
T Consensus 199 ~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 199 NEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHH
Confidence 34667777766666656555554443321 222 12235778999999999755
No 199
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=39.50 E-value=6.7 Score=31.75 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=12.5
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|++|||||..+
T Consensus 10 ~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVR 25 (208)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECcCCCCHHHHH
Confidence 3445699999999865
No 200
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=39.14 E-value=10 Score=34.51 Aligned_cols=16 Identities=25% Similarity=0.185 Sum_probs=12.9
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++..|+||||||...
T Consensus 4 ~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 4 LTVLDLHPGAGKTRRV 19 (431)
T ss_dssp EEEEECCTTSCTTTTH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3567899999999873
No 201
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=39.08 E-value=11 Score=36.90 Aligned_cols=27 Identities=15% Similarity=0.183 Sum_probs=18.6
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
++..+..+....++-||.+|+|||...
T Consensus 192 l~~~l~~~~~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 192 VIEVLSRRTKNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp HHHHHHCSSSCEEEEESCTTTTTHHHH
T ss_pred HHHHHhCCCCCCeEEECCCCCCHHHHH
Confidence 333343444445778999999999865
No 202
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=38.99 E-value=6.5 Score=31.12 Aligned_cols=13 Identities=38% Similarity=0.432 Sum_probs=10.9
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-.|++|||||..+
T Consensus 6 l~GpsGaGKsTl~ 18 (186)
T 3a00_A 6 ISGPSGTGKSTLL 18 (186)
T ss_dssp EESSSSSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3599999999865
No 203
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=38.93 E-value=6.9 Score=34.15 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.1
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.+.-.|++|+|||.++
T Consensus 102 vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSL 117 (302)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4455699999999987
No 204
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=38.59 E-value=7.4 Score=39.11 Aligned_cols=20 Identities=25% Similarity=0.420 Sum_probs=18.6
Q ss_pred CCCceeEeeeeccCCCCcee
Q psy17370 170 NGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyT 189 (262)
++.|.||+--|.+|+|||.+
T Consensus 166 ~~~nQsIiiSGESGAGKTe~ 185 (837)
T 1kk8_A 166 DRENQSCLITGESGAGKTEN 185 (837)
T ss_dssp HTSEEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEeCCCCCCchhh
Confidence 58999999999999999976
No 205
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=38.24 E-value=7.7 Score=38.75 Aligned_cols=21 Identities=24% Similarity=0.509 Sum_probs=18.8
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
++.|.||+--|.+|+|||.+.
T Consensus 153 ~~~nQsIiisGESGAGKTe~t 173 (795)
T 1w7j_A 153 DERNQSIIVSGESGAGKTVSA 173 (795)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 589999999999999999753
No 206
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=38.04 E-value=8.8 Score=39.95 Aligned_cols=21 Identities=19% Similarity=0.446 Sum_probs=18.9
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
++.|.||+.-|.+|+|||.+.
T Consensus 166 ~~~~Q~i~isGeSGaGKTe~~ 186 (1184)
T 1i84_S 166 DREDQSILCTGESGAGKTENT 186 (1184)
T ss_dssp HTCCEEEECCCSTTSSTTHHH
T ss_pred cCCCcEEEEecCCCCCccHHH
Confidence 589999999999999999753
No 207
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=37.90 E-value=8.1 Score=39.66 Aligned_cols=21 Identities=29% Similarity=0.485 Sum_probs=18.9
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
++.|.||+--|.+|+|||.+.
T Consensus 169 ~~~~QsIiisGESGAGKTe~~ 189 (1010)
T 1g8x_A 169 DRQNQSLLITGESGAGKTENT 189 (1010)
T ss_dssp HTCCEEEEEEESTTSSHHHHH
T ss_pred cCCCeEEEEeCCCCCCcchHH
Confidence 589999999999999999763
No 208
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=37.77 E-value=9 Score=38.12 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=15.3
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+....++..|+||||||...
T Consensus 386 ~~~~~~~Ll~a~TGSGKTlva 406 (780)
T 1gm5_A 386 SEKPMNRLLQGDVGSGKTVVA 406 (780)
T ss_dssp SSSCCCCEEECCSSSSHHHHH
T ss_pred ccCCCcEEEEcCCCCCHHHHH
Confidence 344345677899999999754
No 209
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=37.55 E-value=8.7 Score=32.84 Aligned_cols=18 Identities=33% Similarity=0.442 Sum_probs=14.0
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
+-++.--|++|+|||..|
T Consensus 2 ~f~v~lvG~nGaGKSTLl 19 (270)
T 3sop_A 2 DFNIMVVGQSGLGKSTLV 19 (270)
T ss_dssp EEEEEEEESSSSSHHHHH
T ss_pred eeEEEEECCCCCCHHHHH
Confidence 345666799999999865
No 210
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=37.42 E-value=7.7 Score=37.61 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=16.4
Q ss_pred hhhhCCCceeEeeeeccCCCCceec
Q psy17370 166 DAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 166 ~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+++|.|+ +..|+||||||...
T Consensus 35 ~~i~~~~~~--lv~apTGsGKT~~~ 57 (702)
T 2p6r_A 35 EKVFSGKNL--LLAMPTAAGKTLLA 57 (702)
T ss_dssp HHHTTCSCE--EEECSSHHHHHHHH
T ss_pred HHHhCCCcE--EEEcCCccHHHHHH
Confidence 334567664 55789999999764
No 211
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=37.34 E-value=8.2 Score=37.74 Aligned_cols=19 Identities=42% Similarity=0.641 Sum_probs=14.8
Q ss_pred hhCCCceeEeeeeccCCCCce
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTy 188 (262)
.++|.+ ++..|+||||||+
T Consensus 152 ~l~rk~--vlv~apTGSGKT~ 170 (677)
T 3rc3_A 152 AMQRKI--IFHSGPTNSGKTY 170 (677)
T ss_dssp TSCCEE--EEEECCTTSSHHH
T ss_pred hcCCCE--EEEEcCCCCCHHH
Confidence 456654 5678999999998
No 212
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=37.21 E-value=7.7 Score=30.53 Aligned_cols=15 Identities=27% Similarity=0.401 Sum_probs=11.8
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-.|++|||||..+
T Consensus 8 i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 8 LVLLGAHGVGRRHIK 22 (180)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 444599999999865
No 213
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=36.91 E-value=8.5 Score=39.44 Aligned_cols=20 Identities=20% Similarity=0.486 Sum_probs=18.6
Q ss_pred CCCceeEeeeeccCCCCcee
Q psy17370 170 NGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyT 189 (262)
++.|.||+--|.+|+|||.+
T Consensus 143 ~~~~QsIiisGESGAGKTe~ 162 (995)
T 2ycu_A 143 DREDQSILCTGESGAGKTEN 162 (995)
T ss_dssp HCCCEEEEEECBTTSSHHHH
T ss_pred cCCCcEEEecCCCCCCchhh
Confidence 58999999999999999975
No 214
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=36.83 E-value=9.4 Score=35.97 Aligned_cols=24 Identities=33% Similarity=0.480 Sum_probs=16.5
Q ss_pred HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+.+.+|.++.+ -.+||+|||.+.
T Consensus 16 ~~~l~~~~~~~~--~a~TGtGKT~~~ 39 (551)
T 3crv_A 16 IEGLRNNFLVAL--NAPTGSGKTLFS 39 (551)
T ss_dssp HHHHHTTCEEEE--ECCTTSSHHHHH
T ss_pred HHHHHcCCcEEE--ECCCCccHHHHH
Confidence 344567776544 458999998865
No 215
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=36.79 E-value=11 Score=37.73 Aligned_cols=51 Identities=22% Similarity=0.372 Sum_probs=32.1
Q ss_pred eeeeceeeCCCCCcchhhcccchhhHh-hhhCCCc----eeEeeeeccCCCCceec
Q psy17370 140 TFKLDHCLGQDTDQTSVFTIIAQPLLD-AAFNGYN----VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 140 ~f~FD~vf~~~~~q~~vy~~~~~plv~-~~l~G~n----~~ifaYG~tgSGKTyTm 190 (262)
.-+|+.|-+-+..-+++.+.+..||.. .++.++. ..|+-||+.|+|||...
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LA 255 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHH
Confidence 345666666665555665555555543 2444433 35889999999999744
No 216
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=36.68 E-value=8.4 Score=38.39 Aligned_cols=21 Identities=24% Similarity=0.476 Sum_probs=18.9
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
++.|.||+.-|.+|+|||.+.
T Consensus 168 ~~~nQsIiiSGESGAGKTe~t 188 (783)
T 4db1_A 168 DRENQSILITGESGAGKTVNT 188 (783)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEeCCCCCCCchHH
Confidence 689999999999999999753
No 217
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=36.50 E-value=14 Score=29.85 Aligned_cols=27 Identities=30% Similarity=0.560 Sum_probs=19.0
Q ss_pred hhHhhhhCC-C--ceeEeeeeccCCCCcee
Q psy17370 163 PLLDAAFNG-Y--NVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 163 plv~~~l~G-~--n~~ifaYG~tgSGKTyT 189 (262)
+-++.+|.| . ...+.-+|.+|+|||.-
T Consensus 17 ~~LD~~l~GGl~~G~l~~i~G~pG~GKT~l 46 (251)
T 2zts_A 17 PGFDELIEGGFPEGTTVLLTGGTGTGKTTF 46 (251)
T ss_dssp TTTGGGTTTSEETTCEEEEECCTTSSHHHH
T ss_pred HHHHHhhcCCCCCCeEEEEEeCCCCCHHHH
Confidence 556777763 2 34566789999999953
No 218
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=36.39 E-value=12 Score=28.82 Aligned_cols=15 Identities=47% Similarity=0.437 Sum_probs=11.7
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
..-+|++|||||.-+
T Consensus 26 ~~I~G~NGsGKStil 40 (149)
T 1f2t_A 26 NLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 345899999998744
No 219
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=36.37 E-value=12 Score=36.81 Aligned_cols=16 Identities=31% Similarity=0.463 Sum_probs=14.2
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||++|+|||+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 6888999999999865
No 220
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=36.35 E-value=7.5 Score=31.26 Aligned_cols=15 Identities=33% Similarity=0.399 Sum_probs=12.0
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-.|++|+|||..+
T Consensus 7 i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 7 VVLSGPSGAGKSTLL 21 (198)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999876
No 221
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=36.25 E-value=12 Score=29.40 Aligned_cols=20 Identities=30% Similarity=0.282 Sum_probs=14.8
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
+..-.|.-.|..|||||...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVA 25 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHH
T ss_pred cCceEEEEECCCCCCHHHHH
Confidence 34446777899999999743
No 222
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=36.01 E-value=8.3 Score=30.30 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=11.8
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-.|.+|||||..+
T Consensus 5 i~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 5 YIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 445699999999854
No 223
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=35.87 E-value=8.8 Score=39.67 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=18.4
Q ss_pred CCCceeEeeeeccCCCCcee
Q psy17370 170 NGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyT 189 (262)
++.|.||+--|.+|+|||.+
T Consensus 153 ~~~~QsIiisGESGAGKTe~ 172 (1080)
T 2dfs_A 153 DERNQSIIVSGESGAGKTVS 172 (1080)
T ss_dssp HTCCEEEEEECSTTSSHHHH
T ss_pred cCCCcEEEEcCCCCCCccch
Confidence 58999999999999999965
No 224
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=35.80 E-value=6 Score=33.07 Aligned_cols=19 Identities=21% Similarity=0.013 Sum_probs=15.4
Q ss_pred eeEeeeeccCCCCceecCC
Q psy17370 174 VCLFAYGQTGSGKSYRGDS 192 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm~G 192 (262)
..++-||..|+|||..+++
T Consensus 13 ~i~litG~mGsGKTT~ll~ 31 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIR 31 (223)
T ss_dssp EEEEEECSTTSCHHHHHHH
T ss_pred EEEEEECCCCCcHHHHHHH
Confidence 4577789999999987753
No 225
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=35.77 E-value=11 Score=31.72 Aligned_cols=15 Identities=40% Similarity=0.479 Sum_probs=12.0
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|.+|||||.-
T Consensus 3 li~I~G~~GSGKSTl 17 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDM 17 (253)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCcCHHHH
Confidence 356789999999863
No 226
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=35.74 E-value=6.7 Score=36.11 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=16.6
Q ss_pred HhhhhCCCceeEeeeeccCCCCceec
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
|..+++|.++ +..|.||+|||.+.
T Consensus 122 i~~~~~~~~~--ll~~~tGsGKT~~~ 145 (510)
T 2oca_A 122 VFEGLVNRRR--ILNLPTSAGRSLIQ 145 (510)
T ss_dssp HHHHHHHSEE--EEECCSTTTHHHHH
T ss_pred HHHHHhcCCc--EEEeCCCCCHHHHH
Confidence 3444555554 55689999999975
No 227
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=35.70 E-value=11 Score=29.25 Aligned_cols=16 Identities=44% Similarity=0.505 Sum_probs=12.3
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
...-+|++|||||..+
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 3456799999999754
No 228
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=35.68 E-value=9.3 Score=29.35 Aligned_cols=16 Identities=44% Similarity=0.698 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||...
T Consensus 6 ~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CEEEECCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3666899999999754
No 229
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=35.39 E-value=10 Score=38.99 Aligned_cols=21 Identities=19% Similarity=0.362 Sum_probs=19.1
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
++.|.||+.-|.+|||||.+.
T Consensus 141 ~~~nQsIiiSGESGAGKTest 161 (1052)
T 4anj_A 141 LKLSQSIIVSGESGAGKTENT 161 (1052)
T ss_dssp HTCCEEEEEECSTTSSHHHHH
T ss_pred hCCCceEEEecCCCCCHHHHH
Confidence 589999999999999999764
No 230
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=35.36 E-value=9.4 Score=29.64 Aligned_cols=15 Identities=20% Similarity=0.379 Sum_probs=12.5
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 5 ~I~i~G~~GsGKsT~ 19 (192)
T 1kht_A 5 VVVVTGVPGVGSTTS 19 (192)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999974
No 231
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=35.35 E-value=12 Score=34.31 Aligned_cols=14 Identities=29% Similarity=0.304 Sum_probs=11.6
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
++..++||||||..
T Consensus 24 vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 24 TVLDLHPGSGKTRK 37 (459)
T ss_dssp EEECCCTTSCTTTT
T ss_pred EEEECCCCCCHHHH
Confidence 45668999999987
No 232
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=35.09 E-value=8.4 Score=30.79 Aligned_cols=17 Identities=24% Similarity=0.003 Sum_probs=14.2
Q ss_pred eEeeeeccCCCCceecC
Q psy17370 175 CLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~ 191 (262)
.++-||..|+|||..++
T Consensus 5 i~vi~G~~gsGKTT~ll 21 (184)
T 2orw_A 5 LTVITGPMYSGKTTELL 21 (184)
T ss_dssp EEEEEESTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 45678999999999874
No 233
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=34.93 E-value=11 Score=30.81 Aligned_cols=14 Identities=21% Similarity=0.318 Sum_probs=7.5
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
.-.|++|||||..+
T Consensus 31 ~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 31 VLSSPSGCGKTTVA 44 (231)
T ss_dssp EEECSCC----CHH
T ss_pred EEECCCCCCHHHHH
Confidence 34599999999875
No 234
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=34.89 E-value=8.8 Score=30.87 Aligned_cols=13 Identities=31% Similarity=0.235 Sum_probs=10.9
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-.|++|||||..+
T Consensus 25 l~GpnGsGKSTLl 37 (207)
T 1znw_A 25 LSGPSAVGKSTVV 37 (207)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3599999999865
No 235
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=34.89 E-value=14 Score=35.79 Aligned_cols=21 Identities=33% Similarity=0.493 Sum_probs=15.2
Q ss_pred hhCCCceeEeeeeccCCCCceec
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+++|.| ++..|+||||||...
T Consensus 43 ~~~~~~--~lv~apTGsGKT~~~ 63 (715)
T 2va8_A 43 LLEGNR--LLLTSPTGSGKTLIA 63 (715)
T ss_dssp TTTTCC--EEEECCTTSCHHHHH
T ss_pred hcCCCc--EEEEcCCCCcHHHHH
Confidence 345555 456789999999864
No 236
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=34.80 E-value=11 Score=29.94 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=12.9
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|.+|||||...
T Consensus 27 ~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLG 42 (199)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4667899999999754
No 237
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=34.77 E-value=13 Score=38.37 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=17.7
Q ss_pred hHhhhhCCCceeEeeeeccCCCCce
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSY 188 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTy 188 (262)
.+..+++|.+ ++..++||||||.
T Consensus 86 ai~~il~g~d--vlv~ApTGSGKTl 108 (1104)
T 4ddu_A 86 WAKRIVQGKS--FTMVAPTGVGKTT 108 (1104)
T ss_dssp HHHHHTTTCC--EEECCSTTCCHHH
T ss_pred HHHHHHcCCC--EEEEeCCCCcHHH
Confidence 3556677876 4567899999998
No 238
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=34.73 E-value=8.1 Score=31.17 Aligned_cols=15 Identities=33% Similarity=0.457 Sum_probs=12.4
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-.|.+|+|||.++
T Consensus 4 i~i~G~nG~GKTTll 18 (189)
T 2i3b_A 4 VFLTGPPGVGKTTLI 18 (189)
T ss_dssp EEEESCCSSCHHHHH
T ss_pred EEEECCCCChHHHHH
Confidence 445699999999976
No 239
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=34.69 E-value=8.5 Score=33.95 Aligned_cols=20 Identities=45% Similarity=0.454 Sum_probs=14.7
Q ss_pred hCCCceeEeeeeccCCCCceec
Q psy17370 169 FNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTyTm 190 (262)
-.|.+. .--|.+|||||..+
T Consensus 169 ~~g~~v--~i~G~~GsGKTTll 188 (330)
T 2pt7_A 169 AIGKNV--IVCGGTGSGKTTYI 188 (330)
T ss_dssp HHTCCE--EEEESTTSCHHHHH
T ss_pred cCCCEE--EEECCCCCCHHHHH
Confidence 356654 34699999999876
No 240
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=34.57 E-value=14 Score=30.37 Aligned_cols=23 Identities=22% Similarity=0.095 Sum_probs=13.5
Q ss_pred HhhhhCCCceeEeeeeccCCCCc
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKS 187 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKT 187 (262)
|.......--..|-||..|||||
T Consensus 12 ~~~~~~~~g~l~fiyG~MgsGKT 34 (195)
T 1w4r_A 12 VPRGSKTRGQIQVILGPMFSGKS 34 (195)
T ss_dssp -------CCEEEEEEECTTSCHH
T ss_pred cccCCCCceEEEEEECCCCCcHH
Confidence 33333333447889999999999
No 241
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=34.32 E-value=9 Score=30.27 Aligned_cols=16 Identities=25% Similarity=0.358 Sum_probs=12.3
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|.+|||||..+
T Consensus 8 ~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVR 23 (207)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999764
No 242
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=34.21 E-value=8.7 Score=36.15 Aligned_cols=15 Identities=27% Similarity=0.468 Sum_probs=13.6
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-||++|+|||+.+
T Consensus 67 vLL~GppGtGKTtLa 81 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLA 81 (499)
T ss_dssp EEEECSSSSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 788999999999865
No 243
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=34.14 E-value=8.6 Score=36.93 Aligned_cols=17 Identities=47% Similarity=0.497 Sum_probs=13.9
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
.-++..|.||||||..+
T Consensus 215 pHlLIaG~TGSGKS~~L 231 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGV 231 (574)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CeeEEECCCCCCHHHHH
Confidence 34677899999999876
No 244
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=34.12 E-value=18 Score=27.51 Aligned_cols=27 Identities=19% Similarity=0.372 Sum_probs=19.2
Q ss_pred hHhhhhC-CCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFN-GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~-G~n~~ifaYG~tgSGKTyTm 190 (262)
+++.++. ....-|.-.|..|+|||.-+
T Consensus 8 ~~~~~~~~~~~~~i~v~G~~~~GKssli 35 (183)
T 1moz_A 8 MFDKLWGSNKELRILILGLDGAGKTTIL 35 (183)
T ss_dssp HHGGGTTCSSCEEEEEEEETTSSHHHHH
T ss_pred HHHHhcCCCCccEEEEECCCCCCHHHHH
Confidence 3444555 45567888899999999754
No 245
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=34.03 E-value=11 Score=29.45 Aligned_cols=15 Identities=20% Similarity=0.392 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||..
T Consensus 7 ~I~l~G~~GsGKST~ 21 (193)
T 2rhm_A 7 LIIVTGHPATGKTTL 21 (193)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577789999999974
No 246
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=33.90 E-value=13 Score=29.02 Aligned_cols=16 Identities=31% Similarity=0.549 Sum_probs=12.5
Q ss_pred eeEeeeeccCCCCcee
Q psy17370 174 VCLFAYGQTGSGKSYR 189 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyT 189 (262)
..|+-.|..|||||..
T Consensus 14 ~~i~l~G~~GsGKsT~ 29 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTI 29 (186)
T ss_dssp EEEEEECCTTSSHHHH
T ss_pred cEEEEEcCCCCCHHHH
Confidence 3466679999999874
No 247
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=33.78 E-value=12 Score=38.64 Aligned_cols=24 Identities=17% Similarity=0.256 Sum_probs=17.9
Q ss_pred hHhhhhCCCceeEeeeeccCCCCcee
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
.|..+++|.+ ++..|+||||||..
T Consensus 192 AI~~i~~g~d--vLV~ApTGSGKTlv 215 (1108)
T 3l9o_A 192 AISCIDRGES--VLVSAHTSAGKTVV 215 (1108)
T ss_dssp HHHHHTTTCC--EEEECCSSSHHHHH
T ss_pred HHHHHHcCCC--EEEECCCCCChHHH
Confidence 4555677766 46788999999964
No 248
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=33.67 E-value=13 Score=36.24 Aligned_cols=17 Identities=29% Similarity=0.321 Sum_probs=14.5
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
+.++-||++|+|||+..
T Consensus 489 ~~~ll~G~~GtGKT~la 505 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVT 505 (758)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred eEEEEECCCCCcHHHHH
Confidence 46888999999999854
No 249
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=33.45 E-value=12 Score=32.05 Aligned_cols=17 Identities=24% Similarity=0.128 Sum_probs=14.9
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++-+|+.|+|||..+
T Consensus 31 ~~v~i~G~~G~GKT~L~ 47 (357)
T 2fna_A 31 PITLVLGLRRTGKSSII 47 (357)
T ss_dssp SEEEEEESTTSSHHHHH
T ss_pred CcEEEECCCCCCHHHHH
Confidence 47888999999999865
No 250
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=33.38 E-value=11 Score=35.34 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=16.0
Q ss_pred hhhhCCCceeEeeeeccCCCCceec
Q psy17370 166 DAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 166 ~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
..+.+|.++.+ -.+||+|||.+.
T Consensus 21 ~~~~~~~~~~~--~a~TGtGKT~~~ 43 (540)
T 2vl7_A 21 NALKHGKTLLL--NAKPGLGKTVFV 43 (540)
T ss_dssp HHHHTTCEEEE--ECCTTSCHHHHH
T ss_pred HHHHcCCCEEE--EcCCCCcHHHHH
Confidence 44567776544 458999999754
No 251
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=33.32 E-value=6.1 Score=32.12 Aligned_cols=17 Identities=29% Similarity=0.020 Sum_probs=14.3
Q ss_pred eEeeeeccCCCCceecC
Q psy17370 175 CLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~ 191 (262)
..+-||..|||||..+.
T Consensus 10 i~v~~G~mgsGKTT~ll 26 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELI 26 (191)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCcHHHHHH
Confidence 56778999999998775
No 252
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=33.09 E-value=12 Score=28.46 Aligned_cols=16 Identities=19% Similarity=-0.004 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3566799999999743
No 253
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=32.98 E-value=12 Score=35.60 Aligned_cols=25 Identities=28% Similarity=0.317 Sum_probs=17.5
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+..++.+ ..++-.|..|+|||+++
T Consensus 197 Av~~~~~~--~~~~I~G~pGTGKTt~i 221 (574)
T 3e1s_A 197 VLDQLAGH--RLVVLTGGPGTGKSTTT 221 (574)
T ss_dssp HHHHHTTC--SEEEEECCTTSCHHHHH
T ss_pred HHHHHHhC--CEEEEEcCCCCCHHHHH
Confidence 34445543 34556899999999987
No 254
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=32.98 E-value=9.7 Score=34.19 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=13.3
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.+.-.|++|||||.++
T Consensus 159 vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSL 174 (359)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEEcCCCChHHHHH
Confidence 4556699999999987
No 255
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=32.68 E-value=12 Score=37.20 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.9
Q ss_pred eEeeeeccCCCCceecC
Q psy17370 175 CLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~ 191 (262)
.++-.|..|||||+|+.
T Consensus 377 ~~lI~GppGTGKT~~i~ 393 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSA 393 (802)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred CEEEECCCCCCHHHHHH
Confidence 35678999999999873
No 256
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=32.56 E-value=17 Score=28.82 Aligned_cols=17 Identities=35% Similarity=0.554 Sum_probs=13.1
Q ss_pred ceeEeeeeccCCCCcee
Q psy17370 173 NVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyT 189 (262)
...|+-.|.+|||||..
T Consensus 25 g~~i~l~G~sGsGKSTl 41 (200)
T 3uie_A 25 GCVIWVTGLSGSGKSTL 41 (200)
T ss_dssp CEEEEEECSTTSSHHHH
T ss_pred CeEEEEECCCCCCHHHH
Confidence 34566679999999874
No 257
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=32.25 E-value=13 Score=32.82 Aligned_cols=17 Identities=29% Similarity=0.352 Sum_probs=13.4
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..+.-.|++|+|||.++
T Consensus 130 ~vi~lvG~nGaGKTTll 146 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTI 146 (328)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34555699999999986
No 258
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=31.98 E-value=12 Score=29.50 Aligned_cols=15 Identities=27% Similarity=0.507 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||+.
T Consensus 12 ~I~l~G~~GsGKSTv 26 (184)
T 1y63_A 12 NILITGTPGTGKTSM 26 (184)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999985
No 259
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=31.93 E-value=21 Score=27.87 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=20.6
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.+.+.++.....-|.-.|..|+|||.-+
T Consensus 19 ~~~~~~~~~~~~ki~v~G~~~vGKSsLi 46 (192)
T 2b6h_A 19 SLFSRIFGKKQMRILMVGLDAAGKTTIL 46 (192)
T ss_dssp CGGGGTTTTSCEEEEEEESTTSSHHHHH
T ss_pred HHHHHhccCCccEEEEECCCCCCHHHHH
Confidence 4445556555667888999999999744
No 260
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=31.85 E-value=13 Score=37.97 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=16.7
Q ss_pred HhhhhCCCceeEeeeeccCCCCcee
Q psy17370 165 LDAAFNGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 165 v~~~l~G~n~~ifaYG~tgSGKTyT 189 (262)
+..+++|.+ ++..++||||||..
T Consensus 95 i~~l~~g~~--vLV~apTGSGKTlv 117 (1010)
T 2xgj_A 95 ISCIDRGES--VLVSAHTSAGKTVV 117 (1010)
T ss_dssp HHHHHHTCE--EEEECCTTSCHHHH
T ss_pred HHHHHcCCC--EEEECCCCCChHHH
Confidence 344566766 56678999999975
No 261
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=31.84 E-value=12 Score=35.25 Aligned_cols=22 Identities=36% Similarity=0.525 Sum_probs=16.1
Q ss_pred hhhCCCceeEeeeeccCCCCceec
Q psy17370 167 AAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 167 ~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.++.|. -|+-||+.|+|||+..
T Consensus 37 al~~~~--~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 37 AALSGE--SVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHTC--EEEEECCSSSSHHHHH
T ss_pred HHhcCC--eeEeecCchHHHHHHH
Confidence 344554 4667999999999865
No 262
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=31.72 E-value=13 Score=35.19 Aligned_cols=16 Identities=25% Similarity=0.395 Sum_probs=13.0
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|.+|||||.++
T Consensus 295 VI~LVGpNGSGKTTLl 310 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTI 310 (503)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCcccHHHHH
Confidence 4555699999999977
No 263
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=31.61 E-value=13 Score=37.07 Aligned_cols=17 Identities=24% Similarity=0.405 Sum_probs=13.9
Q ss_pred eEeeeeccCCCCceecC
Q psy17370 175 CLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm~ 191 (262)
.++-.|..|+|||+|+.
T Consensus 373 ~~lI~GppGTGKT~ti~ 389 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSA 389 (800)
T ss_dssp EEEEECCTTSCHHHHHH
T ss_pred eEEEEcCCCCCHHHHHH
Confidence 45678999999999863
No 264
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=31.42 E-value=12 Score=29.04 Aligned_cols=15 Identities=33% Similarity=0.713 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||..
T Consensus 5 ~I~l~G~~GsGKsT~ 19 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQ 19 (196)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999874
No 265
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=31.25 E-value=11 Score=32.98 Aligned_cols=17 Identities=24% Similarity=0.479 Sum_probs=13.7
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..|.-.|++|+|||.++
T Consensus 105 ~vi~ivG~~GsGKTTl~ 121 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSC 121 (306)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred eEEEEEcCCCChHHHHH
Confidence 34566799999999877
No 266
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=31.20 E-value=12 Score=30.46 Aligned_cols=15 Identities=33% Similarity=0.530 Sum_probs=12.6
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
++-.|..|||||+-+
T Consensus 8 ~l~tG~pGsGKT~~a 22 (199)
T 2r2a_A 8 CLITGTPGSGKTLKM 22 (199)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEeCCCCCHHHHH
Confidence 456799999999965
No 267
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=31.06 E-value=11 Score=36.44 Aligned_cols=19 Identities=21% Similarity=0.118 Sum_probs=15.4
Q ss_pred ceeEeeeeccCCCCceecC
Q psy17370 173 NVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~ 191 (262)
++.++..|.-|||||+++.
T Consensus 15 ~~~~lV~AgaGSGKT~~l~ 33 (673)
T 1uaa_A 15 TGPCLVLAGAGSGKTRVIT 33 (673)
T ss_dssp SSEEEECCCTTSCHHHHHH
T ss_pred CCCEEEEeCCCCChHHHHH
Confidence 4456677899999999985
No 268
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=30.99 E-value=14 Score=28.57 Aligned_cols=15 Identities=27% Similarity=0.485 Sum_probs=8.5
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 7 ~I~l~G~~GsGKST~ 21 (183)
T 2vli_A 7 IIWINGPFGVGKTHT 21 (183)
T ss_dssp EEEEECCC----CHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999974
No 269
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=30.93 E-value=13 Score=28.81 Aligned_cols=15 Identities=27% Similarity=0.556 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||..
T Consensus 6 ~I~l~G~~GsGKST~ 20 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQ 20 (186)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999874
No 270
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=30.88 E-value=12 Score=28.56 Aligned_cols=15 Identities=27% Similarity=0.459 Sum_probs=12.2
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 4 ~I~l~G~~GsGKsT~ 18 (173)
T 1e6c_A 4 PIFMVGARGCGMTTV 18 (173)
T ss_dssp CEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 366779999999974
No 271
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=30.61 E-value=19 Score=35.22 Aligned_cols=16 Identities=38% Similarity=0.343 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++..++||||||+.+
T Consensus 234 ~vlv~ApTGSGKT~a~ 249 (666)
T 3o8b_A 234 VAHLHAPTGSGKSTKV 249 (666)
T ss_dssp EEEEECCTTSCTTTHH
T ss_pred eEEEEeCCchhHHHHH
Confidence 3567789999999754
No 272
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=30.50 E-value=18 Score=36.12 Aligned_cols=17 Identities=29% Similarity=0.391 Sum_probs=14.9
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++-||++|+|||+..
T Consensus 589 ~~vLl~Gp~GtGKT~lA 605 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELA 605 (854)
T ss_dssp EEEEEBSCSSSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 57889999999999864
No 273
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=30.38 E-value=11 Score=30.84 Aligned_cols=13 Identities=31% Similarity=0.355 Sum_probs=10.8
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-.|++|||||..+
T Consensus 28 lvGpsGsGKSTLl 40 (218)
T 1z6g_A 28 ICGPSGVGKGTLI 40 (218)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3599999999865
No 274
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=30.20 E-value=22 Score=30.70 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=20.3
Q ss_pred hhHhhhhCC-C--ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNG-Y--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G-~--n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.| . ...+.-||..|+|||.-+
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la 115 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIM 115 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHH
Confidence 566777754 2 345778999999998754
No 275
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=30.17 E-value=11 Score=35.22 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=13.9
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-||++|+|||+.+
T Consensus 51 gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLA 66 (476)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4889999999999865
No 276
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=29.87 E-value=14 Score=28.65 Aligned_cols=15 Identities=33% Similarity=0.273 Sum_probs=12.0
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 3 ~I~i~G~~GsGKsT~ 17 (194)
T 1nks_A 3 IGIVTGIPGVGKSTV 17 (194)
T ss_dssp EEEEEECTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366789999999864
No 277
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=29.81 E-value=14 Score=29.44 Aligned_cols=15 Identities=33% Similarity=0.419 Sum_probs=11.8
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|+-.|++|||||.-+
T Consensus 15 i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 15 LVVCGPSGVGKGTLI 29 (204)
T ss_dssp EEEECCTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 455799999998744
No 278
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=29.35 E-value=18 Score=30.46 Aligned_cols=26 Identities=31% Similarity=0.285 Sum_probs=19.0
Q ss_pred hCCCceeEeeeeccCCCCceec---CCCC
Q psy17370 169 FNGYNVCLFAYGQTGSGKSYRG---DSTL 194 (262)
Q Consensus 169 l~G~n~~ifaYG~tgSGKTyTm---~G~~ 194 (262)
-.|+...|.-.|.+|+|||.-+ +|..
T Consensus 4 ~~g~~~~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 4 GSGFEFTLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp ---CEEEEEEEECTTSSHHHHHHHHSSSC
T ss_pred cCccEEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3578888999999999998744 6654
No 279
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=28.88 E-value=15 Score=28.78 Aligned_cols=15 Identities=40% Similarity=0.700 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||+-
T Consensus 14 ~I~l~G~~GsGKsT~ 28 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQ 28 (199)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466789999999874
No 280
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=28.81 E-value=12 Score=35.37 Aligned_cols=16 Identities=44% Similarity=0.491 Sum_probs=12.9
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
-++-.|.||||||..+
T Consensus 169 HlLIaG~TGSGKSt~L 184 (512)
T 2ius_A 169 HLLVAGTTGSGASVGV 184 (512)
T ss_dssp SEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3566799999999865
No 281
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=28.77 E-value=10 Score=36.59 Aligned_cols=23 Identities=26% Similarity=0.345 Sum_probs=16.0
Q ss_pred hhhhCCCceeEeeeeccCCCCceec
Q psy17370 166 DAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 166 ~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
+.+.+|.+ +++-.+||+|||...
T Consensus 17 ~~l~~~~~--~~~~apTGtGKT~a~ 39 (620)
T 4a15_A 17 SSLQKSYG--VALESPTGSGKTIMA 39 (620)
T ss_dssp HHHHHSSE--EEEECCTTSCHHHHH
T ss_pred HHHHcCCC--EEEECCCCCCHHHHH
Confidence 34456765 456679999999753
No 282
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=28.64 E-value=14 Score=28.50 Aligned_cols=14 Identities=43% Similarity=0.477 Sum_probs=11.7
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|..|||||..
T Consensus 7 i~i~G~~GsGKsTl 20 (175)
T 1via_A 7 IVFIGFMGSGKSTL 20 (175)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEEcCCCCCHHHH
Confidence 56679999999874
No 283
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=28.58 E-value=13 Score=29.01 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.+.-.|+.|+|||..+
T Consensus 35 ~v~L~G~nGaGKTTLl 50 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLT 50 (158)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445699999999865
No 284
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=28.44 E-value=17 Score=27.95 Aligned_cols=16 Identities=38% Similarity=0.445 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||..+
T Consensus 10 ~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 10 IYVLMGVSGSGKSAVA 25 (175)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4566799999999754
No 285
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=28.42 E-value=15 Score=28.60 Aligned_cols=14 Identities=43% Similarity=0.434 Sum_probs=11.9
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|..|||||..
T Consensus 5 I~l~G~~GsGKsT~ 18 (184)
T 2iyv_A 5 AVLVGLPGSGKSTI 18 (184)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 66779999999874
No 286
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=28.40 E-value=15 Score=29.82 Aligned_cols=15 Identities=33% Similarity=0.386 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 9 ~I~l~G~~GsGKsT~ 23 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTV 23 (227)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999874
No 287
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=28.26 E-value=17 Score=32.48 Aligned_cols=14 Identities=50% Similarity=0.676 Sum_probs=12.3
Q ss_pred eEeeeeccCCCCce
Q psy17370 175 CLFAYGQTGSGKSY 188 (262)
Q Consensus 175 ~ifaYG~tgSGKTy 188 (262)
.|+-.|+||||||.
T Consensus 42 lIvI~GPTgsGKTt 55 (339)
T 3a8t_A 42 LLVLMGATGTGKSR 55 (339)
T ss_dssp EEEEECSTTSSHHH
T ss_pred eEEEECCCCCCHHH
Confidence 57778999999987
No 288
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=28.24 E-value=24 Score=30.61 Aligned_cols=28 Identities=29% Similarity=0.337 Sum_probs=20.1
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.|. ...+.-||..|+|||.-+
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la 124 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLC 124 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHH
Confidence 5567777542 335677999999998754
No 289
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=28.16 E-value=18 Score=32.03 Aligned_cols=14 Identities=43% Similarity=0.555 Sum_probs=11.0
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
.+-+|.||+|||--
T Consensus 28 ~vi~G~NGaGKT~i 41 (371)
T 3auy_A 28 VAIIGENGSGKSSI 41 (371)
T ss_dssp EEEEECTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 34579999999853
No 290
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=28.14 E-value=15 Score=29.18 Aligned_cols=16 Identities=44% Similarity=0.688 Sum_probs=13.0
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||...
T Consensus 20 ~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVG 35 (202)
T ss_dssp CEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667799999999854
No 291
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=28.02 E-value=15 Score=31.73 Aligned_cols=18 Identities=39% Similarity=0.707 Sum_probs=13.5
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...|.--|.+|||||..+
T Consensus 31 ~~ii~I~G~sGsGKSTla 48 (290)
T 1odf_A 31 PLFIFFSGPQGSGKSFTS 48 (290)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 344556699999999865
No 292
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=27.98 E-value=22 Score=36.86 Aligned_cols=20 Identities=20% Similarity=0.243 Sum_probs=15.7
Q ss_pred CCCceeEeeeeccCCCCcee
Q psy17370 170 NGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyT 189 (262)
.|....++..|+||+|||..
T Consensus 621 ~g~p~d~ll~~~TGsGKT~v 640 (1151)
T 2eyq_A 621 QPLAMDRLVCGDVGFGKTEV 640 (1151)
T ss_dssp SSSCCEEEEECCCCTTTHHH
T ss_pred cCCcCcEEEECCCCCCHHHH
Confidence 47655677889999999964
No 293
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=27.95 E-value=15 Score=28.00 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=11.6
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|..|||||.-
T Consensus 3 I~l~G~~GsGKsT~ 16 (168)
T 2pt5_A 3 IYLIGFMCSGKSTV 16 (168)
T ss_dssp EEEESCTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56679999999874
No 294
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=27.72 E-value=17 Score=29.27 Aligned_cols=13 Identities=38% Similarity=0.529 Sum_probs=11.3
Q ss_pred EeeeeccCCCCce
Q psy17370 176 LFAYGQTGSGKSY 188 (262)
Q Consensus 176 ifaYG~tgSGKTy 188 (262)
++-+|..|||||.
T Consensus 2 ilV~Gg~~SGKS~ 14 (180)
T 1c9k_A 2 ILVTGGARSGKSR 14 (180)
T ss_dssp EEEEECTTSSHHH
T ss_pred EEEECCCCCcHHH
Confidence 6789999999975
No 295
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=27.64 E-value=17 Score=31.53 Aligned_cols=14 Identities=43% Similarity=0.363 Sum_probs=11.4
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
.-+|.+|||||--|
T Consensus 28 ~i~G~NGsGKS~ll 41 (322)
T 1e69_A 28 AIVGPNGSGKSNII 41 (322)
T ss_dssp EEECCTTTCSTHHH
T ss_pred EEECCCCCcHHHHH
Confidence 35799999999755
No 296
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=27.62 E-value=14 Score=30.51 Aligned_cols=16 Identities=31% Similarity=0.324 Sum_probs=13.0
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|+-.|..|||||..+
T Consensus 29 ~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVC 44 (246)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4666799999999854
No 297
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=27.55 E-value=17 Score=32.09 Aligned_cols=15 Identities=33% Similarity=0.572 Sum_probs=12.6
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|+||||||.-
T Consensus 7 ~i~i~GptGsGKTtl 21 (323)
T 3crm_A 7 AIFLMGPTAAGKTDL 21 (323)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 577789999999873
No 298
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=27.32 E-value=28 Score=30.79 Aligned_cols=28 Identities=29% Similarity=0.381 Sum_probs=19.6
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.|. ...+.-+|..|||||.-+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~ 148 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLA 148 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 5566777643 345667899999998743
No 299
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=27.29 E-value=17 Score=30.51 Aligned_cols=15 Identities=33% Similarity=0.375 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||+.
T Consensus 6 lIvl~G~pGSGKSTl 20 (260)
T 3a4m_A 6 LIILTGLPGVGKSTF 20 (260)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 577789999999974
No 300
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=27.16 E-value=14 Score=34.86 Aligned_cols=16 Identities=31% Similarity=0.387 Sum_probs=13.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||++|+|||+.+
T Consensus 110 ~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 110 ILCLAGPPGVGKTSLA 125 (543)
T ss_dssp EEEEESSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5677999999999864
No 301
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=27.04 E-value=13 Score=31.76 Aligned_cols=17 Identities=24% Similarity=0.045 Sum_probs=14.6
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..++-+|+.|+|||..+
T Consensus 32 ~~v~i~G~~G~GKT~Ll 48 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLL 48 (350)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCcCCHHHHH
Confidence 57788999999999865
No 302
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=27.03 E-value=17 Score=28.14 Aligned_cols=15 Identities=40% Similarity=0.738 Sum_probs=12.2
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||..
T Consensus 8 ~I~l~G~~GsGKsT~ 22 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQ 22 (194)
T ss_dssp EEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466679999999874
No 303
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=27.00 E-value=16 Score=28.87 Aligned_cols=15 Identities=33% Similarity=0.736 Sum_probs=12.5
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 17 ~I~l~G~~GsGKsT~ 31 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQ 31 (203)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 567789999999974
No 304
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=26.83 E-value=18 Score=29.95 Aligned_cols=18 Identities=28% Similarity=0.473 Sum_probs=13.6
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...|+-.|.||+|||...
T Consensus 34 g~~ilI~GpsGsGKStLA 51 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETA 51 (205)
T ss_dssp TEEEEEECCCTTTTHHHH
T ss_pred CEEEEEECCCCCCHHHHH
Confidence 345677899999998543
No 305
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=26.76 E-value=24 Score=31.79 Aligned_cols=21 Identities=43% Similarity=0.793 Sum_probs=17.3
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.-..|+-.|..|+|||...
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~ 41 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIA 41 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHH
Confidence 566667888999999999865
No 306
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=26.70 E-value=15 Score=29.20 Aligned_cols=15 Identities=33% Similarity=0.293 Sum_probs=11.7
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.-.|.+|||||..+
T Consensus 9 i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 9 IGIAGGTASGKTTLA 23 (211)
T ss_dssp EEEEESTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344599999999865
No 307
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=26.55 E-value=17 Score=28.29 Aligned_cols=15 Identities=40% Similarity=0.711 Sum_probs=12.3
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 11 ~I~l~G~~GsGKsT~ 25 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQ 25 (196)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 466779999999974
No 308
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=26.30 E-value=17 Score=28.68 Aligned_cols=15 Identities=33% Similarity=0.368 Sum_probs=12.0
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.-.|..|||||...
T Consensus 4 i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 4 IGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCcCHHHHH
Confidence 556799999999753
No 309
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=26.27 E-value=17 Score=29.76 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=12.5
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||+-
T Consensus 18 ~I~l~G~~GsGKsT~ 32 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQ 32 (233)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999874
No 310
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=26.27 E-value=17 Score=29.32 Aligned_cols=15 Identities=27% Similarity=0.508 Sum_probs=12.3
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 6 ~I~l~G~~GsGKsT~ 20 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQ 20 (220)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999863
No 311
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=26.20 E-value=19 Score=31.82 Aligned_cols=15 Identities=40% Similarity=0.609 Sum_probs=12.2
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|+||||||.-
T Consensus 12 ~i~i~GptgsGKt~l 26 (316)
T 3foz_A 12 AIFLMGPTASGKTAL 26 (316)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCccCHHHH
Confidence 466789999999963
No 312
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=25.94 E-value=29 Score=30.44 Aligned_cols=28 Identities=21% Similarity=0.286 Sum_probs=20.4
Q ss_pred hhHhhhhCC-C--ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNG-Y--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G-~--n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.| . ...+.-||..|+|||.-+
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla 139 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLS 139 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHH
Confidence 557777864 3 345678999999999754
No 313
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=25.57 E-value=19 Score=31.35 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=18.0
Q ss_pred hHhhhhCCC-ceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGY-NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~-n~~ifaYG~tgSGKTyTm 190 (262)
+...+-.|. .-.++-||+.|+|||.+.
T Consensus 14 l~~~i~~~~~~~a~L~~G~~G~GKt~~a 41 (334)
T 1a5t_A 14 LVASYQAGRGHHALLIQALPGMGDDALI 41 (334)
T ss_dssp HHHHHHTTCCCSEEEEECCTTSCHHHHH
T ss_pred HHHHHHcCCcceeEEEECCCCchHHHHH
Confidence 333344454 335788999999999864
No 314
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=25.42 E-value=16 Score=30.36 Aligned_cols=13 Identities=46% Similarity=0.506 Sum_probs=10.8
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-.|++|||||..+
T Consensus 36 iiG~nGsGKSTLl 48 (235)
T 3tif_A 36 IMGPSGSGKSTML 48 (235)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCcHHHHH
Confidence 4699999999755
No 315
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=25.29 E-value=16 Score=32.08 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|++|+|||.++
T Consensus 107 vI~ivG~~G~GKTT~~ 122 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSL 122 (320)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3445599999999877
No 316
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=25.13 E-value=19 Score=33.23 Aligned_cols=17 Identities=29% Similarity=0.485 Sum_probs=13.3
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..|+-.|.+|+|||.|+
T Consensus 98 ~vI~lvG~~GsGKTTt~ 114 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTA 114 (433)
T ss_dssp EEEEECCCTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 34555599999999986
No 317
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=24.98 E-value=23 Score=30.86 Aligned_cols=16 Identities=25% Similarity=0.233 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|.+|||||..+
T Consensus 92 ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 92 IIGVAGSVAVGKSTTA 107 (312)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCchHHHHH
Confidence 3444599999999876
No 318
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=24.88 E-value=12 Score=34.29 Aligned_cols=15 Identities=47% Similarity=0.439 Sum_probs=11.9
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+--.|.+|+|||..|
T Consensus 72 valvG~nGaGKSTLl 86 (413)
T 1tq4_A 72 VAVTGETGSGKSSFI 86 (413)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCcHHHHH
Confidence 334599999999975
No 319
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=24.86 E-value=24 Score=28.47 Aligned_cols=15 Identities=47% Similarity=0.437 Sum_probs=11.6
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
..-+|++|+|||.-|
T Consensus 26 ~~I~G~NgsGKStil 40 (203)
T 3qks_A 26 NLIIGQNGSGKSSLL 40 (203)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEEcCCCCCHHHHH
Confidence 345799999998754
No 320
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=24.75 E-value=23 Score=32.47 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=13.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|.+|+|||++.
T Consensus 101 vI~ivG~~GvGKTTla 116 (432)
T 2v3c_C 101 VILLVGIQGSGKTTTA 116 (432)
T ss_dssp CEEEECCSSSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5666799999999976
No 321
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=24.67 E-value=18 Score=33.43 Aligned_cols=17 Identities=29% Similarity=0.415 Sum_probs=13.8
Q ss_pred eeEeeeeccCCCCceec
Q psy17370 174 VCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyTm 190 (262)
..|+-||++|+|||+..
T Consensus 51 ~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 51 KNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred ceEEEEcCCCCCHHHHH
Confidence 34788999999998743
No 322
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=24.61 E-value=20 Score=31.79 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=12.0
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|+||||||.-
T Consensus 5 ~i~i~GptgsGKt~l 19 (322)
T 3exa_A 5 LVAIVGPTAVGKTKT 19 (322)
T ss_dssp EEEEECCTTSCHHHH
T ss_pred EEEEECCCcCCHHHH
Confidence 355679999999974
No 323
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=24.61 E-value=22 Score=28.23 Aligned_cols=16 Identities=31% Similarity=0.488 Sum_probs=12.1
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.-.|..|||||..+
T Consensus 31 ~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIA 46 (200)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3455699999999853
No 324
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=23.72 E-value=17 Score=37.31 Aligned_cols=16 Identities=31% Similarity=0.436 Sum_probs=12.7
Q ss_pred EeeeeccCCCCceecC
Q psy17370 176 LFAYGQTGSGKSYRGD 191 (262)
Q Consensus 176 ifaYG~tgSGKTyTm~ 191 (262)
.+...+||||||++|+
T Consensus 303 gli~~~TGSGKT~t~~ 318 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTSF 318 (1038)
T ss_dssp EEEEECTTSSHHHHHH
T ss_pred EEEEecCCCCHHHHHH
Confidence 3456789999999984
No 325
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=23.69 E-value=20 Score=28.58 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=11.3
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|..|||||..
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45579999999874
No 326
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=23.58 E-value=23 Score=30.74 Aligned_cols=27 Identities=11% Similarity=-0.025 Sum_probs=18.5
Q ss_pred hHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 164 LLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 164 lv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
|...+-+|..-.++-||+.|+|||.+.
T Consensus 9 L~~~i~~~~~~~~Lf~Gp~G~GKtt~a 35 (305)
T 2gno_A 9 LKRIIEKSEGISILINGEDLSYPREVS 35 (305)
T ss_dssp HHHHHHTCSSEEEEEECSSSSHHHHHH
T ss_pred HHHHHHCCCCcEEEEECCCCCCHHHHH
Confidence 333344565446788999999998654
No 327
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=23.43 E-value=20 Score=27.95 Aligned_cols=14 Identities=36% Similarity=0.638 Sum_probs=11.1
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|.--|..|||||.-
T Consensus 3 I~i~G~~GsGKsT~ 16 (205)
T 2jaq_A 3 IAIFGTVGAGKSTI 16 (205)
T ss_dssp EEEECCTTSCHHHH
T ss_pred EEEECCCccCHHHH
Confidence 45579999999873
No 328
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=23.29 E-value=18 Score=35.35 Aligned_cols=19 Identities=26% Similarity=0.204 Sum_probs=14.9
Q ss_pred ceeEeeeeccCCCCceecC
Q psy17370 173 NVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm~ 191 (262)
++.++..|.-|||||+++.
T Consensus 24 ~g~~lV~AgAGSGKT~vL~ 42 (724)
T 1pjr_A 24 EGPLLIMAGAGSGKTRVLT 42 (724)
T ss_dssp SSCEEEEECTTSCHHHHHH
T ss_pred CCCEEEEEcCCCCHHHHHH
Confidence 3456667899999999884
No 329
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=23.27 E-value=13 Score=31.60 Aligned_cols=12 Identities=42% Similarity=0.484 Sum_probs=10.6
Q ss_pred eeccCCCCceec
Q psy17370 179 YGQTGSGKSYRG 190 (262)
Q Consensus 179 YG~tgSGKTyTm 190 (262)
.|++|||||..+
T Consensus 43 iG~nGsGKSTLl 54 (266)
T 4g1u_C 43 IGPNGAGKSTLL 54 (266)
T ss_dssp ECCTTSCHHHHH
T ss_pred ECCCCCcHHHHH
Confidence 599999999865
No 330
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=23.25 E-value=22 Score=28.05 Aligned_cols=16 Identities=25% Similarity=0.542 Sum_probs=13.1
Q ss_pred eeEeeeeccCCCCcee
Q psy17370 174 VCLFAYGQTGSGKSYR 189 (262)
Q Consensus 174 ~~ifaYG~tgSGKTyT 189 (262)
..|+-.|..|||||.-
T Consensus 21 ~~I~l~G~~GsGKST~ 36 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQ 36 (201)
T ss_dssp CEEEEECCTTSSHHHH
T ss_pred eEEEEECCCCCCHHHH
Confidence 3577789999999974
No 331
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=23.19 E-value=19 Score=28.67 Aligned_cols=15 Identities=27% Similarity=0.118 Sum_probs=11.6
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.--|..|||||..+
T Consensus 7 i~i~G~sGsGKTTl~ 21 (169)
T 1xjc_A 7 WQVVGYKHSGKTTLM 21 (169)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 444589999999866
No 332
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=23.04 E-value=24 Score=25.92 Aligned_cols=16 Identities=38% Similarity=0.370 Sum_probs=13.0
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
-|...|..|+|||..+
T Consensus 5 ~i~v~G~~~~GKssl~ 20 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALT 20 (166)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4667899999999754
No 333
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=22.92 E-value=23 Score=32.75 Aligned_cols=18 Identities=33% Similarity=0.401 Sum_probs=14.9
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...|+-.|.+|+|||.|.
T Consensus 100 p~vIlivG~~G~GKTTt~ 117 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTV 117 (443)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred CeEEEEECcCCCCHHHHH
Confidence 356677899999999986
No 334
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=22.75 E-value=24 Score=34.96 Aligned_cols=13 Identities=46% Similarity=0.731 Sum_probs=11.1
Q ss_pred EeeeeccCCCCce
Q psy17370 176 LFAYGQTGSGKSY 188 (262)
Q Consensus 176 ifaYG~tgSGKTy 188 (262)
++..|+||||||.
T Consensus 112 vii~gpTGSGKTt 124 (773)
T 2xau_A 112 MVFVGETGSGKTT 124 (773)
T ss_dssp EEEECCTTSSHHH
T ss_pred EEEECCCCCCHHH
Confidence 4567999999998
No 335
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=22.73 E-value=21 Score=27.56 Aligned_cols=14 Identities=36% Similarity=0.475 Sum_probs=11.2
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|.-.|..|||||.-
T Consensus 3 I~l~G~~GsGKsT~ 16 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQ 16 (195)
T ss_dssp EEEECSTTSCHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45579999999874
No 336
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=22.68 E-value=23 Score=31.39 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=19.6
Q ss_pred hhCCCceeEeeeeccCCCCceec
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
++.|.+..|.-.|.+|+|||.-+
T Consensus 32 ~~~~~~~~I~vvG~~g~GKSTLl 54 (361)
T 2qag_A 32 VKKGFEFTLMVVGESGLGKSTLI 54 (361)
T ss_dssp HHHCCEECEEECCCTTSCHHHHH
T ss_pred ecCCCCEEEEEEcCCCCCHHHHH
Confidence 56788888999999999999744
No 337
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=22.64 E-value=19 Score=29.56 Aligned_cols=14 Identities=29% Similarity=0.290 Sum_probs=11.1
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
.-.|++|||||..+
T Consensus 20 ~l~GpsGsGKSTLl 33 (219)
T 1s96_A 20 IVSAPSGAGKSSLI 33 (219)
T ss_dssp EEECCTTSCHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 34599999999755
No 338
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=22.63 E-value=26 Score=31.11 Aligned_cols=13 Identities=38% Similarity=0.378 Sum_probs=10.6
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-.|++|||||.-+
T Consensus 28 i~G~NGaGKTTll 40 (365)
T 3qf7_A 28 VEGPNGAGKSSLF 40 (365)
T ss_dssp EECCTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 4899999999543
No 339
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=22.56 E-value=14 Score=30.52 Aligned_cols=15 Identities=40% Similarity=0.284 Sum_probs=11.6
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|---|..|||||..+
T Consensus 28 igI~G~~GsGKSTl~ 42 (245)
T 2jeo_A 28 IGVSGGTASGKSTVC 42 (245)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 334599999999865
No 340
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=22.26 E-value=32 Score=29.68 Aligned_cols=16 Identities=25% Similarity=0.522 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.+...|..|+|||.++
T Consensus 100 vi~i~G~~G~GKTT~~ 115 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTA 115 (297)
T ss_dssp EEEEECSSCSSTTHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3444599999999876
No 341
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=22.17 E-value=33 Score=30.32 Aligned_cols=28 Identities=32% Similarity=0.437 Sum_probs=19.7
Q ss_pred hhHhhhhC-C-C--ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFN-G-Y--NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~-G-~--n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|. | . ...+.-||..|+|||..+
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLa 78 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVA 78 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHH
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHH
Confidence 55666776 3 2 334677899999999864
No 342
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=22.13 E-value=22 Score=28.33 Aligned_cols=14 Identities=36% Similarity=0.603 Sum_probs=11.2
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|..|||||.-
T Consensus 3 I~l~G~~GsGKsT~ 16 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQ 16 (216)
T ss_dssp EEEECSTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 45579999999874
No 343
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=22.07 E-value=25 Score=28.23 Aligned_cols=15 Identities=27% Similarity=0.377 Sum_probs=12.1
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 7 ~I~l~G~~GsGKsT~ 21 (222)
T 1zak_A 7 KVMISGAPASGKGTQ 21 (222)
T ss_dssp CEEEEESTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366789999999863
No 344
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=22.02 E-value=25 Score=27.11 Aligned_cols=18 Identities=22% Similarity=0.217 Sum_probs=14.6
Q ss_pred ceeEeeeeccCCCCceec
Q psy17370 173 NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 173 n~~ifaYG~tgSGKTyTm 190 (262)
...|.-.|..|+|||..+
T Consensus 48 ~~~i~vvG~~g~GKSsll 65 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLL 65 (193)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 346788999999999755
No 345
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=21.91 E-value=27 Score=31.09 Aligned_cols=16 Identities=25% Similarity=0.260 Sum_probs=13.0
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.++-||+.|+|||+-.
T Consensus 125 viLI~GpPGsGKTtLA 140 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLV 140 (331)
T ss_dssp EEEEECSCSSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 3567999999999754
No 346
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=21.84 E-value=21 Score=29.31 Aligned_cols=12 Identities=50% Similarity=0.542 Sum_probs=10.3
Q ss_pred eeccCCCCceec
Q psy17370 179 YGQTGSGKSYRG 190 (262)
Q Consensus 179 YG~tgSGKTyTm 190 (262)
.|++|||||..+
T Consensus 36 iG~nGsGKSTLl 47 (224)
T 2pcj_A 36 IGASGSGKSTLL 47 (224)
T ss_dssp EECTTSCHHHHH
T ss_pred ECCCCCCHHHHH
Confidence 599999999855
No 347
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=21.84 E-value=23 Score=27.81 Aligned_cols=15 Identities=40% Similarity=0.425 Sum_probs=12.3
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 6 ~I~i~G~~GsGKsT~ 20 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQ 20 (213)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEEcCCCCCHHHH
Confidence 466779999999875
No 348
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=21.76 E-value=24 Score=28.26 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=11.3
Q ss_pred EeeeeccCCCCcee
Q psy17370 176 LFAYGQTGSGKSYR 189 (262)
Q Consensus 176 ifaYG~tgSGKTyT 189 (262)
|+-.|..|||||.-
T Consensus 3 I~l~G~~GsGKsT~ 16 (214)
T 1e4v_A 3 IILLGAPVAGKGTQ 16 (214)
T ss_dssp EEEEESTTSSHHHH
T ss_pred EEEECCCCCCHHHH
Confidence 56679999999863
No 349
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=21.73 E-value=24 Score=28.42 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=12.0
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 7 ~I~l~G~~GsGKsT~ 21 (217)
T 3be4_A 7 NLILIGAPGSGKGTQ 21 (217)
T ss_dssp EEEEEECTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 366679999999863
No 350
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=21.51 E-value=32 Score=26.27 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=14.9
Q ss_pred CCceeEeeeeccCCCCceec
Q psy17370 171 GYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 171 G~n~~ifaYG~tgSGKTyTm 190 (262)
.....|.-.|..|+|||.-+
T Consensus 16 ~~~~~i~v~G~~~~GKssl~ 35 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTIL 35 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHH
Confidence 34456778899999999754
No 351
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=21.41 E-value=26 Score=25.81 Aligned_cols=15 Identities=27% Similarity=0.231 Sum_probs=12.1
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.-.|..|+|||.-+
T Consensus 4 i~v~G~~~~GKSsli 18 (161)
T 2dyk_A 4 VVIVGRPNVGKSSLF 18 (161)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 556799999999754
No 352
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=21.41 E-value=24 Score=27.97 Aligned_cols=15 Identities=33% Similarity=0.330 Sum_probs=11.7
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.-.|..|||||...
T Consensus 5 i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 5 VGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 445699999999754
No 353
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=21.11 E-value=29 Score=30.28 Aligned_cols=14 Identities=50% Similarity=0.539 Sum_probs=11.5
Q ss_pred eeeeccCCCCceec
Q psy17370 177 FAYGQTGSGKSYRG 190 (262)
Q Consensus 177 faYG~tgSGKTyTm 190 (262)
.-+|++|+|||.-|
T Consensus 27 ~i~G~NGsGKS~ll 40 (339)
T 3qkt_A 27 LIIGQNGSGKSSLL 40 (339)
T ss_dssp EEECCTTSSHHHHH
T ss_pred EEECCCCCCHHHHH
Confidence 35799999999765
No 354
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=20.96 E-value=27 Score=26.62 Aligned_cols=15 Identities=47% Similarity=0.468 Sum_probs=12.0
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 9 ~i~l~G~~GsGKSTv 23 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSL 23 (168)
T ss_dssp EEEEESCTTSSHHHH
T ss_pred eEEEECCCCCCHHHH
Confidence 456679999999873
No 355
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=20.89 E-value=25 Score=28.17 Aligned_cols=16 Identities=25% Similarity=0.349 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.|.--|.+|||||.-.
T Consensus 7 ~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 7 VITIDGPSGAGKGTLC 22 (227)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3556799999999744
No 356
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=20.88 E-value=42 Score=25.69 Aligned_cols=23 Identities=22% Similarity=0.184 Sum_probs=18.0
Q ss_pred hhCCCceeEeeeeccCCCCceec
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
++......|.-.|..|+|||.-+
T Consensus 11 ~~~~~~~~i~v~G~~~~GKssl~ 33 (187)
T 1zj6_A 11 LFNHQEHKVIIVGLDNAGKTTIL 33 (187)
T ss_dssp HHTTSCEEEEEEESTTSSHHHHH
T ss_pred hcCCCccEEEEECCCCCCHHHHH
Confidence 45556677888999999999754
No 357
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=20.74 E-value=29 Score=30.94 Aligned_cols=15 Identities=33% Similarity=0.390 Sum_probs=12.2
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|.-.|+||||||.-
T Consensus 9 lI~I~GptgSGKTtl 23 (340)
T 3d3q_A 9 LIVIVGPTASGKTEL 23 (340)
T ss_dssp EEEEECSTTSSHHHH
T ss_pred eEEEECCCcCcHHHH
Confidence 466779999999973
No 358
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=20.73 E-value=31 Score=33.53 Aligned_cols=18 Identities=22% Similarity=0.187 Sum_probs=14.3
Q ss_pred CCCceeEeeeeccCCCCcee
Q psy17370 170 NGYNVCLFAYGQTGSGKSYR 189 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyT 189 (262)
+|.|. +..|+||||||..
T Consensus 240 ~g~dv--lv~apTGSGKTl~ 257 (673)
T 2wv9_A 240 KRQLT--VLDLHPGAGKTRR 257 (673)
T ss_dssp TTCEE--EECCCTTTTTTTT
T ss_pred cCCeE--EEEeCCCCCHHHH
Confidence 56664 5678999999987
No 359
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=20.72 E-value=20 Score=32.74 Aligned_cols=20 Identities=25% Similarity=0.396 Sum_probs=13.8
Q ss_pred CCCceeEeeeeccCCCCceecC
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRGD 191 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm~ 191 (262)
.|.+ +|+| -.+|+|||.++.
T Consensus 55 ~~~~-~ila-d~~GlGKT~~ai 74 (500)
T 1z63_A 55 LGFG-ICLA-DDMGLGKTLQTI 74 (500)
T ss_dssp TTCC-EEEC-CCTTSCHHHHHH
T ss_pred CCCC-EEEE-eCCCCcHHHHHH
Confidence 4554 4444 589999999763
No 360
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=20.64 E-value=23 Score=29.61 Aligned_cols=15 Identities=40% Similarity=0.386 Sum_probs=11.7
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
+.-.|++|||||..+
T Consensus 27 ~~liG~nGsGKSTLl 41 (240)
T 2onk_A 27 CVLLGPTGAGKSVFL 41 (240)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344699999999855
No 361
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=20.48 E-value=26 Score=27.73 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=16.1
Q ss_pred hhHhhhhCCCceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
.||..+-.|. .|.-.|.+|||||...
T Consensus 13 ~~~~~~~~~~--~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 13 GLVPRGSKTF--IIGISGVTNSGKTTLA 38 (207)
T ss_dssp -CCCCSCCCE--EEEEEESTTSSHHHHH
T ss_pred cccccCCCCe--EEEEECCCCCCHHHHH
Confidence 3444444453 3445699999999744
No 362
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=20.22 E-value=31 Score=28.94 Aligned_cols=16 Identities=25% Similarity=0.167 Sum_probs=12.7
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
.+.-+|.+|+|||..+
T Consensus 32 i~~i~G~~GsGKTtl~ 47 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLA 47 (279)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEEcCCCCCHHHHH
Confidence 4556899999999854
No 363
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=20.16 E-value=26 Score=29.95 Aligned_cols=27 Identities=15% Similarity=0.052 Sum_probs=15.5
Q ss_pred hhHhhhhCCC---ceeEeeeeccCCCCceec
Q psy17370 163 PLLDAAFNGY---NVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 163 plv~~~l~G~---n~~ifaYG~tgSGKTyTm 190 (262)
+-++.+|.|. ..+++-.|..|+||| |+
T Consensus 8 ~~LD~~l~GGl~~gs~~li~g~p~~~~~-~l 37 (260)
T 3bs4_A 8 EELDREIGKIKKHSLILIHEEDASSRGK-DI 37 (260)
T ss_dssp HHHHHHHCCBCTTCEEEEEECSGGGCHH-HH
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCccHH-HH
Confidence 4567777652 344444566666666 44
No 364
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=20.13 E-value=28 Score=29.39 Aligned_cols=15 Identities=40% Similarity=0.561 Sum_probs=12.4
Q ss_pred eEeeeeccCCCCcee
Q psy17370 175 CLFAYGQTGSGKSYR 189 (262)
Q Consensus 175 ~ifaYG~tgSGKTyT 189 (262)
.|+-.|..|||||.-
T Consensus 4 ~I~l~G~~GsGKST~ 18 (301)
T 1ltq_A 4 IILTIGCPGSGKSTW 18 (301)
T ss_dssp EEEEECCTTSSHHHH
T ss_pred EEEEECCCCCCHHHH
Confidence 467789999999873
No 365
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=20.13 E-value=26 Score=31.34 Aligned_cols=16 Identities=31% Similarity=0.424 Sum_probs=13.1
Q ss_pred eEeeeeccCCCCceec
Q psy17370 175 CLFAYGQTGSGKSYRG 190 (262)
Q Consensus 175 ~ifaYG~tgSGKTyTm 190 (262)
...-+|++|+|||..+
T Consensus 28 ~~~i~G~nG~GKttll 43 (359)
T 2o5v_A 28 VTGIYGENGAGKTNLL 43 (359)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCChhHHH
Confidence 4556799999999876
No 366
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=20.08 E-value=24 Score=29.35 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=10.9
Q ss_pred eeeccCCCCceec
Q psy17370 178 AYGQTGSGKSYRG 190 (262)
Q Consensus 178 aYG~tgSGKTyTm 190 (262)
-.|++|||||..+
T Consensus 37 l~G~nGsGKSTLl 49 (240)
T 1ji0_A 37 LIGANGAGKTTTL 49 (240)
T ss_dssp EECSTTSSHHHHH
T ss_pred EECCCCCCHHHHH
Confidence 3599999999865
No 367
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=20.05 E-value=35 Score=27.75 Aligned_cols=15 Identities=33% Similarity=0.423 Sum_probs=11.3
Q ss_pred EeeeeccCCCCceec
Q psy17370 176 LFAYGQTGSGKSYRG 190 (262)
Q Consensus 176 ifaYG~tgSGKTyTm 190 (262)
|.--|..|||||..+
T Consensus 23 i~i~G~~GsGKSTl~ 37 (230)
T 2vp4_A 23 VLIEGNIGSGKTTYL 37 (230)
T ss_dssp EEEECSTTSCHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 344599999999754
No 368
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=20.02 E-value=24 Score=29.67 Aligned_cols=19 Identities=37% Similarity=0.326 Sum_probs=13.3
Q ss_pred CCCceeEeeeeccCCCCceec
Q psy17370 170 NGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 170 ~G~n~~ifaYG~tgSGKTyTm 190 (262)
.|.-.+ -.|++|||||..+
T Consensus 32 ~Ge~~~--liG~nGsGKSTLl 50 (257)
T 1g6h_A 32 KGDVTL--IIGPNGSGKSTLI 50 (257)
T ss_dssp TTCEEE--EECSTTSSHHHHH
T ss_pred CCCEEE--EECCCCCCHHHHH
Confidence 444333 3599999999865
No 369
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=20.02 E-value=30 Score=29.78 Aligned_cols=21 Identities=29% Similarity=0.358 Sum_probs=14.2
Q ss_pred hhCCCceeEeeeeccCCCCceec
Q psy17370 168 AFNGYNVCLFAYGQTGSGKSYRG 190 (262)
Q Consensus 168 ~l~G~n~~ifaYG~tgSGKTyTm 190 (262)
++.|.- +.-.|++|+|||..+
T Consensus 162 ~l~G~i--~~l~G~sG~GKSTLl 182 (302)
T 2yv5_A 162 YLEGFI--CILAGPSGVGKSSIL 182 (302)
T ss_dssp HTTTCE--EEEECSTTSSHHHHH
T ss_pred hccCcE--EEEECCCCCCHHHHH
Confidence 344543 334599999999866
Done!