RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17370
(262 letters)
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 99.6 bits (249), Expect = 2e-24
Identities = 32/95 (33%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
Query: 99 RMTVAVRIRPLLVKELHMDVSSIE--ISPDRREMKVNDNAK---SYTFKLDHCLGQDTDQ 153
+ V VR+RPL +E S+ + + V F D Q
Sbjct: 1 NIRVVVRVRPLNKREKSRKSPSVVPFPDKVGKTLTVRSPKNRQGEKKFTFDKVFDATASQ 60
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
VF A PL+D+ GYN +FAYGQTGSGK+Y
Sbjct: 61 EDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTY 95
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 93.4 bits (233), Expect = 3e-22
Identities = 38/107 (35%), Positives = 53/107 (49%), Gaps = 7/107 (6%)
Query: 105 RIRPLLVKEL----HMDVSSIEISPDRREMKVNDNA-KSYTFKLDHCLGQDTDQTSVFTI 159
R+RPL +E V+ E + +E V N + TF D + Q V+
Sbjct: 1 RVRPLNEREKSRGSSDIVNVDETDSEDKESVVITNKGREKTFTFDRVFDPEATQEFVYEE 60
Query: 160 IAQPLLDAAFNGYNVCLFAYGQTGSGKSY--RGDSTLNSSVLRPRVL 204
A+PL+++ GYNV +FAYGQTGSGK+Y GD + PR L
Sbjct: 61 TAKPLVESVLEGYNVTIFAYGQTGSGKTYTMEGDPPEEEPGIIPRAL 107
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 92.7 bits (231), Expect = 4e-22
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 4/94 (4%)
Query: 99 RMTVAVRIRPLLVKELHMDVSSIEISPDR----REMKVNDNAKSYTFKLDHCLGQDTDQT 154
+ V VRIRPL +E + S I + ++ K A +F DH ++ Q
Sbjct: 1 NIRVVVRIRPLNGRESKSEESCITVDDNKTVTLTPPKDGRKAGPKSFTFDHVFDPNSTQE 60
Query: 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ A+PL+++ GYN +FAYGQTGSGK+Y
Sbjct: 61 DVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTY 94
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 92.7 bits (231), Expect = 6e-22
Identities = 38/88 (43%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 102 VAVRIRPLLVKE-LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
VAVR+RPLL KE L + + P ++ V + KS+TF D+ T Q V+
Sbjct: 5 VAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTD-KSFTF--DYVFDPSTSQEEVYNTC 61
Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
PL+D F GYN + AYGQTGSGK+Y
Sbjct: 62 VAPLVDGLFEGYNATVLAYGQTGSGKTY 89
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 91.6 bits (228), Expect = 1e-21
Identities = 42/121 (34%), Positives = 56/121 (46%), Gaps = 17/121 (14%)
Query: 98 SRMTVAVRIRPLLVKE--------LHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCL-- 147
+ + VAVR+RP +E + M + + KS++F DH
Sbjct: 1 ANVKVAVRVRPFNSREKNRGSKCIVQMPGKVTTLKNPKAADATRKKPKSFSF--DHSYWS 58
Query: 148 --GQD---TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR 202
+D Q VF + + LLD AF GYNVCLFAYGQTGSGKSY + PR
Sbjct: 59 HDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPR 118
Query: 203 V 203
+
Sbjct: 119 L 119
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 89.6 bits (223), Expect = 6e-21
Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP-DRREMKVN-DNAKSYTFKLDHCLGQDTDQTSVFTI 159
V R+RPLL E S I D ++++ K +F D D Q VF
Sbjct: 6 VFCRVRPLLPSESTEYSSVISFPDEDGGTIELSKGTGKKKSFSFDRVFDPDASQEDVFEE 65
Query: 160 IAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVL 204
+ PL+ +A +GYNVC+FAYGQTGSGK+Y + + + PR L
Sbjct: 66 V-SPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGIIPRAL 109
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 81.2 bits (201), Expect = 9e-18
Identities = 41/110 (37%), Positives = 57/110 (51%), Gaps = 11/110 (10%)
Query: 98 SRMTVAVRIRPLLVKELHMDVSS-IEISPDRREMKVNDN------AKSYTFKLDHCLGQD 150
S + V VR RP +E S +E+S +E+ V+ K+YTF D G +
Sbjct: 2 SNIQVVVRCRPRNSRERKEKSSVVVEVSGSSKEIIVSTGGADKQSTKTYTF--DKVFGPE 59
Query: 151 TDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY--RGDSTLNSSV 198
DQ V++ + P+LD GYN +FAYGQTG+GK+Y GD T N
Sbjct: 60 ADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGS 109
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 77.1 bits (190), Expect = 2e-16
Identities = 39/119 (32%), Positives = 63/119 (52%), Gaps = 19/119 (15%)
Query: 100 MTVAVRIRPLLVKELHMDVSSIEISPDRREMK-----------VNDNAKSYTFKLDHCLG 148
+ V VR+RP K+ SSI++ PD + + VN+ + ++FK D
Sbjct: 2 IQVFVRVRPTPTKQ----GSSIKLGPDGKSVSSNLPKDLVRGVVNNQQEDFSFKFDGVFH 57
Query: 149 QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR---GDSTLNSSVLRPRVL 204
+ Q V+ +A+P++D+A +GYN +FAYGQTG+GK++ G + L PR L
Sbjct: 58 NAS-QEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGLIPRAL 115
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 75.0 bits (185), Expect = 1e-15
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 17/105 (16%)
Query: 99 RMTVAVRIRPLLVKELH---------MDVSSIEISPDRREMKVNDNA------KSYTFKL 143
+TVAVR+RP KE +D + P E + Y+F
Sbjct: 1 SLTVAVRVRPFNEKEKQEGTRRVVKVVDDRMLVFDPKDEEDAFRNLRARRNKELKYSF-- 58
Query: 144 DHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
D + + Q V+ +PL+D NGYN +FAYG TG+GK++
Sbjct: 59 DRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTH 103
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 73.5 bits (181), Expect = 4e-15
Identities = 39/112 (34%), Positives = 56/112 (50%), Gaps = 4/112 (3%)
Query: 96 ECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTS 155
EC+ + V R RPL KE SI P + + + TF D +T Q
Sbjct: 1 ECN-IKVVCRFRPLNEKEELRGSKSIVKFPGEDTVSIAGSDDGKTFSFDRVFPPNTTQED 59
Query: 156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLR---PRVL 204
V+ +A+P++D NGYN +FAYGQTGSGK+Y + L+ PR++
Sbjct: 60 VYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGIIPRIV 111
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 72.0 bits (177), Expect = 1e-14
Identities = 32/95 (33%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 102 VAVRIRPLLVKELHMDVSSI-EISPDRREMKV-------NDNAKSYTFKLDHCLGQDTDQ 153
V VR RPL +E I + +R ++ V + K +TF D ++ Q
Sbjct: 5 VVVRCRPLNKREKSEGAPEIVGVDENRGQVTVHNPKADAKEPPKVFTF--DAVYDPNSTQ 62
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ A+PL+D+ GYN +FAYGQTG+GK++
Sbjct: 63 EDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTF 97
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 71.7 bits (176), Expect = 1e-14
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 102 VAVRIRPLLVKELHMDVSS----IEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVF 157
V VRIRP E+ D ++S D + + +TF DH +T+Q VF
Sbjct: 5 VVVRIRPP--NEIEADGGQGQCLKKLSSDTLVW-HSHPPRMFTF--DHVADSNTNQEDVF 59
Query: 158 TIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+ +PL++ +GYN +FAYGQTGSGK+Y
Sbjct: 60 QSVGKPLVEDCLSGYNGSIFAYGQTGSGKTY 90
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 70.8 bits (174), Expect = 4e-14
Identities = 38/100 (38%), Positives = 49/100 (49%), Gaps = 9/100 (9%)
Query: 98 SRMTVAVRIRPLLVKELH---MDVSSIEISP--DRREMKVNDNAKSY----TFKLDHCLG 148
++TVAVR RPL KEL DV S E +P E K + Y TF+ D+
Sbjct: 1 MKITVAVRKRPLNDKELSKGETDVVSCESNPTVTVHEPKTKVDLTKYIEKHTFRFDYVFD 60
Query: 149 QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+ V+ +PL+ F G FAYGQTGSGK+Y
Sbjct: 61 EAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTY 100
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 70.0 bits (172), Expect = 6e-14
Identities = 31/89 (34%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 101 TVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNA-KSYTFKLDHCLGQDTDQTSVFTI 159
V+VR+RPL +E + + I D +S+TF D G ++ V+
Sbjct: 3 KVSVRVRPLNPRESDNEQVAWSIDNDNTISLEESTPGQSFTF--DRVFGGESTNREVYER 60
Query: 160 IAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
IA+P++ +A GYN +FAYGQT SGK++
Sbjct: 61 IAKPVVRSALEGYNGTIFAYGQTSSGKTF 89
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 66.5 bits (162), Expect = 2e-12
Identities = 54/188 (28%), Positives = 86/188 (45%), Gaps = 19/188 (10%)
Query: 7 PR-ALFSSTPVKKNEGPIATLSSSNQSKPKEKFVKPATPKTPLATANYERCIQARRAMSA 65
PR A+ T + + P + S S K K K P L + + R A +
Sbjct: 7 PRNAILRETSSGEEQSPNPSSHKSKPSSRKLKSSKENAPPPDLNSLTSDLKPDHRSASAK 66
Query: 66 DRSPATPKIKLPRAN-----LIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSS 120
+SP P+ P +N L ++ EN V+D S + V VR++PL K ++
Sbjct: 67 LKSPLPPRP--PSSNPLKRKLSAETAPENGVSD----SGVKVIVRMKPL-NKGEEGEMIV 119
Query: 121 IEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYG 180
++S D + +N TF D ++ Q +F ++ PL++ G+N +FAYG
Sbjct: 120 QKMSND--SLTINGQ----TFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYG 173
Query: 181 QTGSGKSY 188
QTGSGK+Y
Sbjct: 174 QTGSGKTY 181
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 62.0 bits (151), Expect = 4e-11
Identities = 39/138 (28%), Positives = 55/138 (39%), Gaps = 21/138 (15%)
Query: 100 MTVAVRIRPLLVKELHMDVS-SIEI------------SPDRREMKVNDNAKSYTFKLDHC 146
+ V +R+RPL EL + IE+ R+ + N K F
Sbjct: 3 VKVYLRVRPLSKDELESEDEGCIEVINSTTIQLHPPKGSAARKSERNGGQKETKFSFSKV 62
Query: 147 LGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPR---V 203
G +T Q F A PL+ G N LF YG T SGK+Y + + PR V
Sbjct: 63 FGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGILPRSLDV 122
Query: 204 LFYPGFSWSHSGWTGWVS 221
+F S G++ +VS
Sbjct: 123 IFN-----SIGGYSVFVS 135
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 55.1 bits (133), Expect = 9e-09
Identities = 22/49 (44%), Positives = 29/49 (59%)
Query: 140 TFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
T+ D G Q V+ +PL+D+ GYN +FAYGQTGSGK+Y
Sbjct: 57 TYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTY 105
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 54.8 bits (132), Expect = 9e-09
Identities = 34/118 (28%), Positives = 49/118 (41%), Gaps = 18/118 (15%)
Query: 99 RMTVAVRIRPLLVKELHMDVS------------SIEISPDRREMKVNDNAKSYTFKLDHC 146
+ V VR+RP L E S+EI R + K Y F D
Sbjct: 1 NVRVVVRVRPFLDCEEDSSSCVRGIDSDQGQAKSVEIENPRNRGET----KKYQF--DAF 54
Query: 147 LGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVL 204
G + Q +F+ +P++ +G N +FAYG TG+GK++ N L PR L
Sbjct: 55 YGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGLIPRTL 112
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 51.4 bits (123), Expect = 5e-08
Identities = 24/49 (48%), Positives = 33/49 (67%), Gaps = 1/49 (2%)
Query: 156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVL 204
VF + PLL +A +GYNVC+FAYGQTGSGK+Y + + + PR +
Sbjct: 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGIIPRTV 55
>gnl|CDD|215113 PLN02168, PLN02168, copper ion binding / pectinesterase.
Length = 545
Score = 30.7 bits (69), Expect = 0.77
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 12/78 (15%)
Query: 170 NGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVD 229
+GYN + YG +S + L +V R V YP +SW+ ++IA+D
Sbjct: 442 DGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYP-YSWT----------AILIAMD 490
Query: 230 FGCGSWRFESKPSHEIYL 247
G W S+ + + YL
Sbjct: 491 -NQGMWNVRSQKAEQWYL 507
>gnl|CDD|225002 COG2091, Sfp, Phosphopantetheinyl transferase [Coenzyme
metabolism].
Length = 223
Score = 29.3 bits (66), Expect = 1.7
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 4/36 (11%)
Query: 200 RPRVL--FYPGFSWSHSGWTGWVSCVVVIAVDFGCG 233
+P + F+ SHSG +V+ + + G
Sbjct: 75 KPYLPDENLLDFNISHSG--DYVAVALSKEGEIGVD 108
>gnl|CDD|227282 COG4946, COG4946, Uncharacterized protein related to the
periplasmic component of the Tol biopolymer transport
system [Function unknown].
Length = 668
Score = 29.4 bits (66), Expect = 2.4
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 111 VKELHMDVSSIEISPDRREMKVNDNAKSYTFKLD 144
V+E +VSS +S D ++ V + K F ++
Sbjct: 621 VEEYKDNVSSFRLSSDGSKILVKLDGKLRLFDVE 654
>gnl|CDD|220000 pfam08747, DUF1788, Domain of unknown function (DUF1788). Putative
uncharacterized domain in proteins of length around 200
amino acids.
Length = 125
Score = 27.2 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 7/34 (20%)
Query: 182 TGSGKSY---RGDSTLNS--SVLR--PRVLFYPG 208
TG G+ Y R + LN+ SV+ P V+FYPG
Sbjct: 67 TGVGEVYPLIRSHNLLNNLHSVMGDVPLVMFYPG 100
>gnl|CDD|221970 pfam13191, AAA_16, AAA ATPase domain. This family of domains
contain a P-loop motif that is characteristic of the AAA
superfamily.
Length = 154
Score = 27.5 bits (61), Expect = 5.4
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 164 LLDAAFNGYNVCLFAYGQTGSGKS 187
L A +G + G +G+GK+
Sbjct: 15 ALRRARSGGPPSVLLTGPSGTGKT 38
>gnl|CDD|215030 PLN00019, PLN00019, photosystem I reaction center subunit III;
Provisional.
Length = 223
Score = 27.1 bits (60), Expect = 7.9
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 205 FYPGFSWSH-SGWTGWVSCVVVIAVDFGCGSWRFESKPSH-EIYLSV 249
PG + + +GW GWV +IAV E+KP+ EI + V
Sbjct: 148 ITPGLGFLYIAGWIGWVGRSYLIAV-------STEAKPTEKEIIIDV 187
>gnl|CDD|173857 cd08492, PBP2_NikA_DppA_OppA_like_15, The substrate-binding
component of an uncharacterized ABC-type
nickel/dipeptide/oligopeptide-like import system
contains the type 2 periplasmic binding fold. This CD
represents the substrate-binding domain of an
uncharacterized ATP-binding cassette (ABC) type
nickel/dipeptide/oligopeptide-like transporter. The
oligopeptide-binding protein OppA and the
dipeptide-binding protein DppA show significant sequence
similarity to NikA, the initial nickel receptor. The
DppA binds dipeptides and some tripeptides and is
involved in chemotaxis toward dipeptides, whereas the
OppA binds peptides of a wide range of lengths (2-35
amino acid residues) and plays a role in recycling of
cell wall peptides, which precludes any involvement in
chemotaxis. Most of other periplasmic binding proteins
are comprised of only two globular subdomains
corresponding to domains I and III of the
dipeptide/oligopeptide binding proteins. The structural
topology of these domains is most similar to that of the
type 2 periplasmic binding proteins (PBP2), which are
responsible for the uptake of a variety of substrates
such as phosphate, sulfate, polysaccharides,
lysine/arginine/ornithine, and histidine. The PBP2 bind
their ligand in the cleft between these domains in a
manner resembling a Venus flytrap. After binding their
specific ligand with high affinity, they can interact
with a cognate membrane transport complex comprised of
two integral membrane domains and two cytoplasmically
located ATPase domains. This interaction triggers the
ligand translocation across the cytoplasmic membrane
energized by ATP hydrolysis. Besides transport
proteins, the PBP2 superfamily includes the
ligand-binding domains from ionotropic glutamate
receptors, LysR-type transcriptional regulators, and
unorthodox sensor proteins involved in signal
transduction.
Length = 484
Score = 27.6 bits (62), Expect = 8.0
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 131 KVNDNAKSYTFKL 143
+V+D+ +YTF L
Sbjct: 54 EVSDDGTTYTFHL 66
>gnl|CDD|234340 TIGR03744, traC_PFL_4706, conjugative transfer ATPase, PFL_4706
family. Members of this protein family are predicted
ATP-binding proteins apparently associated with DNA
conjugal transfer. Members are found both in plasmids
and in bacterial chromosomal regions that appear to
derive from integrative elements such as conjugative
transposons. More distant homologs, outside the scope of
this family, include type IV secretion/conjugal transfer
proteins such as TraC, VirB4 and TrsE. The granularity
of this protein family definition is chosen so as to
represent one distinctive clade and act as a marker
through which to define and recognize the class of
mobile element it serves [Mobile and extrachromosomal
element functions, Plasmid functions].
Length = 893
Score = 27.3 bits (61), Expect = 9.4
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 11/39 (28%)
Query: 173 NVCLFAYGQTGSGKSYRGDSTLNSS------VLRPRVLF 205
N L G TG+GKS +TL + V RPR LF
Sbjct: 475 NAHLLILGPTGAGKS----ATLTNLLMQVMAVHRPR-LF 508
>gnl|CDD|218181 pfam04621, ETS_PEA3_N, PEA3 subfamily ETS-domain transcription
factor N terminal domain. The N terminus of the PEA3
transcription factors is implicated in transactivation
and in inhibition of DNA binding. Transactivation is
potentiated by activation of the Ras/MAP kinase and
protein kinase A signalling cascades. The N terminal
region contains conserved MAP kinase phosphorylation
sites.
Length = 336
Score = 27.1 bits (60), Expect = 9.4
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
Query: 27 SSSNQSKPKEKFV---KPATPKTPLATANYERCIQARRAMSADRSPATPKIKLPRANLIM 83
S+ KP F P+TP +P+ R +Q +S P+ ++ L
Sbjct: 119 YSAYDRKPASGFKPPTPPSTPCSPVNPQETVRQLQPSGPLSNSSPPSPHTPLPNQSPLPP 178
Query: 84 RSSSE 88
SS
Sbjct: 179 PMSSP 183
>gnl|CDD|215360 PLN02672, PLN02672, methionine S-methyltransferase.
Length = 1082
Score = 27.4 bits (61), Expect = 9.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 179 YGQTGSGKSYRGDST--LNSSVLRPRVLFYPGFSWSHSGWTG 218
G+T KS GD+ L+SS +R +L G + S WTG
Sbjct: 1010 LGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTG 1051
>gnl|CDD|204662 pfam11487, RestrictionSfiI, Type II restriction enzyme SfiI. SfiI
is a restriction enzyme that can cleave two DNA sites
simultaneously to leave 3-base 3' overhangs. It acts as
a homo-tetramer and recognises a specific eight
base-paid palindromic DNA sequence. After binding two
copies of its recognition sequence, SfiI becomes
activated leading to cleavage of all four DNA strands.
The structure of SfiI consists of a central twisted
beta-sheet surrounded by alpha-helices.
Length = 262
Score = 27.2 bits (59), Expect = 9.8
Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 2/68 (2%)
Query: 72 PKIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMK 131
P LP+ L+ +S D L+ S++ + R E + + + + P
Sbjct: 89 PHGLLPQVLLVDAKASTEKNRDTLQRSQLPMDAEFRNTSSGE-VVTMEA-GVIPHLMLQS 146
Query: 132 VNDNAKSY 139
ND
Sbjct: 147 ANDGVLPA 154
>gnl|CDD|215411 PLN02768, PLN02768, AMP deaminase.
Length = 835
Score = 27.5 bits (61), Expect = 9.8
Identities = 9/29 (31%), Positives = 20/29 (68%)
Query: 24 ATLSSSNQSKPKEKFVKPATPKTPLATAN 52
A++ + +K F++P +PK+P+A+A+
Sbjct: 114 ASVHGAGSTKRVGSFIRPTSPKSPVASAS 142
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.130 0.391
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 12,643,586
Number of extensions: 1120211
Number of successful extensions: 979
Number of sequences better than 10.0: 1
Number of HSP's gapped: 965
Number of HSP's successfully gapped: 33
Length of query: 262
Length of database: 10,937,602
Length adjustment: 95
Effective length of query: 167
Effective length of database: 6,723,972
Effective search space: 1122903324
Effective search space used: 1122903324
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.0 bits)