RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17370
(262 letters)
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 109 bits (276), Expect = 2e-28
Identities = 32/88 (36%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
Query: 102 VAVRIRPLLVKELHM-DVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
V VR+RPL +E + + + + D + D +KS+ F D + +V+ I
Sbjct: 8 VCVRVRPLNSREESLGETAQVYWKTDNNVIYQVDGSKSFNF--DRVFHGNETTKNVYEEI 65
Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
A P++D+A GYN +FAYGQT SGK+Y
Sbjct: 66 AAPIIDSAIQGYNGTIFAYGQTASGKTY 93
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 108 bits (273), Expect = 4e-28
Identities = 26/106 (24%), Positives = 41/106 (38%), Gaps = 11/106 (10%)
Query: 83 MRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFK 142
M + + V +AVR P + S ++ P + + + F
Sbjct: 16 MEGAKLSAV---------RIAVREAPYRQFLGRREPSVVQFPPWSDGKSLIVDQNEFHF- 65
Query: 143 LDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
DH Q ++ + PL+D G+ AYGQTG+GKSY
Sbjct: 66 -DHAFPATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSY 110
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 108 bits (273), Expect = 5e-28
Identities = 39/107 (36%), Positives = 58/107 (54%), Gaps = 13/107 (12%)
Query: 83 MRSSSENCVADNLECSRMTVAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTF 141
+ + E V VA+R+RPLL KEL H S +++ P + + + + + F
Sbjct: 5 LPGAEEAPV---------RVALRVRPLLPKELLHGHQSCLQVEPGLGRVTLGRD-RHFGF 54
Query: 142 KLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
L +D Q +V+ QPLL+A F G+N +FAYGQTGSGK+Y
Sbjct: 55 --HVVLAEDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTY 99
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 108 bits (273), Expect = 6e-28
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 3/88 (3%)
Query: 102 VAVRIRPLLVKELHMDVSSI-EISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
V R RPL E + + + E ++ K Y F D + Q V+
Sbjct: 15 VVCRFRPLNDSEEKAGSKFVVKFPNNVEENCISIAGKVYLF--DKVFKPNASQEKVYNEA 72
Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
A+ ++ GYN +FAYGQT SGK++
Sbjct: 73 AKSIVTDVLAGYNGTIFAYGQTSSGKTH 100
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 106 bits (266), Expect = 5e-27
Identities = 37/110 (33%), Positives = 56/110 (50%), Gaps = 21/110 (19%)
Query: 98 SRMTVAVRIRPLLVKEL--------HMDVSSIEISP---DRREMKVNDNAKSYTFKLDHC 146
S++ VAVRIRP+ +E +D + + ++P + + K + + DHC
Sbjct: 1 SKVKVAVRIRPMNRRETDLHTKCVVDVDANKVILNPVNTNLSKGDARGQPKVFAY--DHC 58
Query: 147 LG--------QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+ Q VF + + +L AF+GYN C+FAYGQTGSGKSY
Sbjct: 59 FWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSY 108
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 106 bits (267), Expect = 7e-27
Identities = 38/146 (26%), Positives = 58/146 (39%), Gaps = 18/146 (12%)
Query: 58 QARRAMSADRSPATP------KIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLV 111
+ R + + + P IK R + + D +E R+ V VR RPL
Sbjct: 28 ELRIKRAQEYDSSFPNWEFARMIKEFRVTMECSPLTVT---DPIEEHRICVCVRKRPLNK 84
Query: 112 KELHM-DVSSIEISPDR----REMKVNDNAKSY----TFKLDHCLGQDTDQTSVFTIIAQ 162
+EL ++ I + E K+ + Y F D + V+ A+
Sbjct: 85 QELAKKEIDVISVPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTAR 144
Query: 163 PLLDAAFNGYNVCLFAYGQTGSGKSY 188
PL+ F G FAYGQTGSGK++
Sbjct: 145 PLVQTIFEGGKATCFAYGQTGSGKTH 170
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 106 bits (266), Expect = 7e-27
Identities = 30/95 (31%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 102 VAVRIRPLLVKEL--------HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V VR RP+ KE +DV ++S + ++ K++TF D + Q
Sbjct: 25 VVVRCRPMNGKEKAASYDKVVDVDVKLGQVSVKNPKGTAHEMPKTFTF--DAVYDWNAKQ 82
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
++ +PL+D+ G+N +FAYGQTG+GK+Y
Sbjct: 83 FELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTY 117
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 105 bits (264), Expect = 9e-27
Identities = 37/95 (38%), Positives = 49/95 (51%), Gaps = 10/95 (10%)
Query: 102 VAVRIRPLLVKELHMDVSSI-EISPDRREMKV-------NDNAKSYTFKLDHCLGQDTDQ 153
V VR RP + E SI E P R+E+ V + K+YTF D G T Q
Sbjct: 12 VVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTF--DMVFGASTKQ 69
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ + P+LD GYN +FAYGQTG+GK++
Sbjct: 70 IDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 104
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 105 bits (265), Expect = 1e-26
Identities = 41/146 (28%), Positives = 57/146 (39%), Gaps = 18/146 (12%)
Query: 58 QARRAMSADRSPATP------KIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLV 111
+ R + P IK RA L + D +E R+ V VR RPL
Sbjct: 8 HHHSSGLVPRGSSFPNWEFARMIKEFRATLECHPLTMT---DPIEEHRICVCVRKRPLNK 64
Query: 112 KELHM-DVSSIEISPDR----REMKVNDNAKSY----TFKLDHCLGQDTDQTSVFTIIAQ 162
+EL ++ I I E K+ + Y F D + V+ A+
Sbjct: 65 QELAKKEIDVISIPSKCLLLVHEPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTAR 124
Query: 163 PLLDAAFNGYNVCLFAYGQTGSGKSY 188
PL+ F G FAYGQTGSGK++
Sbjct: 125 PLVQTIFEGGKATCFAYGQTGSGKTH 150
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 106 bits (266), Expect = 1e-26
Identities = 37/149 (24%), Positives = 55/149 (36%), Gaps = 24/149 (16%)
Query: 64 SADRSPATPKIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKEL--------H 115
S D + + L R + + + + V VR+R L +EL
Sbjct: 4 SLDVHQRQTRSNVSTPTLRPRDDTASSFVSKDPGANVRVVVRVRAFLPRELERNAECIVE 63
Query: 116 MDVSSIEI---------SPDRREMKVNDNAKSYTFKLDHCLG-------QDTDQTSVFTI 159
MD ++ D R + + +F D Q V+
Sbjct: 64 MDPATERTSLLVPQETDFADARGARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVYDS 123
Query: 160 IAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+ + LD F GY+ C+FAYGQTGSGKSY
Sbjct: 124 LGEEFLDHNFEGYHTCIFAYGQTGSGKSY 152
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 104 bits (262), Expect = 2e-26
Identities = 28/87 (32%), Positives = 37/87 (42%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIA 161
V R RP E+ I V+ +F D Q+ +F
Sbjct: 10 VVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFDRVFDMSCKQSDIFDFSI 69
Query: 162 QPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+P +D NGYN +FAYGQTG+GKSY
Sbjct: 70 KPTVDDILNGYNGTVFAYGQTGAGKSY 96
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 104 bits (262), Expect = 3e-26
Identities = 27/110 (24%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 84 RSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNA-----KS 138
SS + +R+ VAVR+RP + D +++ +
Sbjct: 7 HSSGRENLYFQGPPARVRVAVRLRPFVDGTAGASDPPCVRGMDSCSLEIANWRNHQETLK 66
Query: 139 YTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
Y F D G+ + Q ++ QP+L G N + AYG TG+GK++
Sbjct: 67 YQF--DAFYGERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTH 114
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 102 bits (257), Expect = 7e-26
Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 13/106 (12%)
Query: 83 MRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFK 142
M +E + V R RPL E++ I + + K Y F
Sbjct: 1 MADLAECNI---------KVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIAS--KPYAF- 48
Query: 143 LDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
D T Q V+ A+ ++ GYN +FAYGQT SGK++
Sbjct: 49 -DRVFQSSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTH 93
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 102 bits (256), Expect = 2e-25
Identities = 30/92 (32%), Positives = 52/92 (56%), Gaps = 7/92 (7%)
Query: 102 VAVRIRPLLVKELHMDVSSI-EISPDRREMKVN----DNAKSYTFKLDHCLGQDTDQTSV 156
V VR+RPL +E + + + ++ R + + K +TF D G ++ Q V
Sbjct: 27 VYVRVRPLNSRERCIRSAEVVDVVGPREVVTRHTLDSKLTKKFTF--DRSFGPESKQCDV 84
Query: 157 FTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
++++ PL++ NGYN +FAYGQTG+GK++
Sbjct: 85 YSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTH 116
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 101 bits (255), Expect = 2e-25
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 21/105 (20%)
Query: 100 MTVAVRIRPLLVKEL--------HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDT 151
+ VAVR+RP +E+ M S+ I ++ + KS++F D+ T
Sbjct: 6 VKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQP---KETPKSFSF--DYSYWSHT 60
Query: 152 --------DQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
Q V+ I + +L AF GYNVC+FAYGQTG+GKSY
Sbjct: 61 SPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSY 105
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 101 bits (254), Expect = 2e-25
Identities = 30/100 (30%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Query: 102 VAVRIRPLLVKEL--------HMDVSSIEIS-----PDRREMKVNDNAKSYTFKLDHCLG 148
V VR RPL +E MD +S ++ ++ + +++TF D
Sbjct: 8 VIVRCRPLNARETRENALNIIRMDEASAQVIVDPPEQEKSATQAKKVPRTFTF--DAVYD 65
Query: 149 QDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
Q + +F +PL+DA G+N +FAYGQTG+GK++
Sbjct: 66 QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTW 105
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 99 bits (250), Expect = 9e-25
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 102 VAVRIRPLLVKELHM-DVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTII 160
V R+RPL KE+ + ++I + + + K+ D + Q VF
Sbjct: 9 VYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVFEDT 68
Query: 161 AQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+ L+ +A +GYNVC+FAYGQTGSGK++
Sbjct: 69 -KYLVQSAVDGYNVCIFAYGQTGSGKTF 95
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 100 bits (250), Expect = 1e-24
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 25/116 (21%)
Query: 96 ECSRMTVAVRIRPLLVKEL--------HMDVSSIEI---------------SPDRREMKV 132
C M V VR+RP KE H+ I + + ++ +K
Sbjct: 8 LCHHMKVVVRVRPENTKEKAAGFHKVVHVVDKHILVFDPKQEEVSFFHGKKTTNQNVIKK 67
Query: 133 NDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+ + F D + + Q+ VF +P+L + NGYN + AYG TG+GK++
Sbjct: 68 QNKDLKFVF--DAVFDETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTH 121
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 99.1 bits (248), Expect = 1e-24
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKV---NDNAKSYTFKLDHCLGQDTDQTSVFT 158
V R+RP+ ++ ++ ++ D + + K +F+LD Q VF
Sbjct: 8 VIARVRPVTKEDGEGPEATNAVTFDADDDSIIHLLHKGKPVSFELDKVFSPQASQQDVFQ 67
Query: 159 IIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+ Q L+ + +G+NVC+FAYGQTG+GK+Y
Sbjct: 68 EV-QALVTSCIDGFNVCIFAYGQTGAGKTY 96
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 97.7 bits (244), Expect = 6e-24
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 9/95 (9%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREMKV--------NDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L + D S I ++ V + A+ + FK D Q
Sbjct: 7 VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 66
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
VF + L+ ++ +GYNVC+FAYGQTGSGK++
Sbjct: 67 VDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTF 100
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 97.4 bits (243), Expect = 1e-23
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 102 VAVRIRPLLVKELHM-------DVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQT 154
VR++P M I + D R VN+ ++FKLD L D Q
Sbjct: 27 AFVRVKPTDDFAHEMIRYGDDKRSIDIHLKKDIRRGVVNNQQTDWSFKLDGVLH-DASQD 85
Query: 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ +A+ ++ A +GYN + YGQTG+GK+Y
Sbjct: 86 LVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTY 119
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 96.9 bits (242), Expect = 1e-23
Identities = 32/94 (34%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 102 VAVRIRPLLVKEL----HMDVSSIEISPDRREMKVNDNA---KSYTFKLDHCLGQDTDQT 154
V R+RP L+ E H+ + + + + +N N SY F+ D
Sbjct: 9 VYCRVRPPLLNEPQDMSHILIEKFNEAKGAQSLTINRNEGRILSYNFQFDMIFEPSHTNK 68
Query: 155 SVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+F I + L+ ++ +GYNVC+FAYGQTGSGK+Y
Sbjct: 69 EIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTY 101
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 96.9 bits (242), Expect = 2e-23
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 11/95 (11%)
Query: 102 VAVRIRPLLVKELH--------MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L E + D S++E+ + K + ++F D + Q
Sbjct: 63 VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 120
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
+ +F +++ PL+ +A +GYN+C+FAYGQTGSGK+Y
Sbjct: 121 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTY 154
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 96.6 bits (241), Expect = 2e-23
Identities = 32/95 (33%), Positives = 48/95 (50%), Gaps = 9/95 (9%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISP--------DRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V +RIRP L + D S I ++ K+ + A+ + FK D Q
Sbjct: 63 VYLRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 122
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
VF + L+ ++ +GYNV +FAYGQTGSGK++
Sbjct: 123 VDVFKEVG-QLVQSSLDGYNVAIFAYGQTGSGKTF 156
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 91.5 bits (228), Expect = 1e-21
Identities = 27/101 (26%), Positives = 40/101 (39%), Gaps = 14/101 (13%)
Query: 100 MTVAVRIRPLLVKELHMDVSSIEISPDRREMKVND-----------NAKSYTFKLDHCLG 148
+ V VR RPL E S I + + +++ + D
Sbjct: 2 IKVVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIV--DKVFD 59
Query: 149 QDTDQTSVFTIIAQPLLDAAF-NGYNVCLFAYGQTGSGKSY 188
D +V+ +PL+ + NG FAYGQTGSGK+Y
Sbjct: 60 DTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTY 100
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 91.6 bits (228), Expect = 1e-21
Identities = 29/107 (27%), Positives = 40/107 (37%), Gaps = 21/107 (19%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREM--------------------KVNDNAKSYTF 141
V R+RP+L E + + F
Sbjct: 26 VFCRVRPVLPGEPTPPPGLLLFPSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDF 85
Query: 142 KLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
D + Q VF IA L+ +A +GY VC+FAYGQTGSGK++
Sbjct: 86 SFDRVFPPGSGQDEVFEEIA-MLVQSALDGYPVCIFAYGQTGSGKTF 131
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 1e-07
Identities = 50/298 (16%), Positives = 87/298 (29%), Gaps = 102/298 (34%)
Query: 12 SSTPVKKNEG------PIATLSSSNQSKPKEKFVKPATPKTPLATANYERCIQARRAMSA 65
S+ P+ + G + T S S+ +E+F K P T + A
Sbjct: 5 STRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNK----ILPEPTEGFA----------A 50
Query: 66 DRSPATPKIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKE----------LH 115
D P TP A L+ + V+ +E S++ ++ L + E +H
Sbjct: 51 DDEPTTP------AELVGKFLGY--VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIH 102
Query: 116 MDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVC 175
+ + D +K + K+Y + D+ S L A G N
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNY-ITARIMAKRPFDKKS-----NSALFRAVGEG-NAQ 155
Query: 176 LFAY--GQTGSGKSY--------------------RGDSTLN---SSVLRPRVLFYPGFS 210
L A GQ G+ Y TL+ + L +F G
Sbjct: 156 LVAIFGGQ-GNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL- 213
Query: 211 WSHSGWTGWVSCVVVIAVDFGCGSW--RFESKPSHEIYLS---VSV----LTDITKFI 259
+ W + P + YL +S + + ++
Sbjct: 214 ------------------NI--LEWLENPSNTPDKD-YLLSIPISCPLIGVIQLAHYV 250
Score = 38.1 bits (88), Expect = 0.002
Identities = 52/249 (20%), Positives = 84/249 (33%), Gaps = 75/249 (30%)
Query: 57 IQARRAMSAD---RSPATPKIKLPRANLIMRS----SSENCVADNLECSRMTV------A 103
Q + M D S A + RA+ + S + V +N +T+
Sbjct: 1626 SQ-EQGMGMDLYKTSKAAQDV-WNRADNHFKDTYGFSILDIVINNP--VNLTIHFGGEKG 1681
Query: 104 VRIRPLLVKELHMDVSSIEISPDRREM------KVNDNAKSYTFKLDHCLGQDT--DQTS 155
RIR E + + E D + ++N+++ SYTF+ + T
Sbjct: 1682 KRIR-----ENYSAMI-FETIVDGKLKTEKIFKEINEHSTSYTFR-----SEKGLLSATQ 1730
Query: 156 VFTIIAQPLL----DAAF-----NGY--NVCLFAYGQTGSGKS---YRGDSTL--NSSVL 199
FT QP L AAF G FA G S Y + L + V+
Sbjct: 1731 -FT---QPALTLMEKAAFEDLKSKGLIPADATFA------GHSLGEY---AALASLADVM 1777
Query: 200 RP----RVLFYPGFSWSHS---GWTGWVSCVVVIAVDFGCGSWRFESKPSHEIYLSVSVL 252
V+FY G + + G S +IA++ G + F + + V
Sbjct: 1778 SIESLVEVVFYRGMTMQVAVPRDELG-RSNYGMIAINPGRVAASFSQEALQYVVERVGKR 1836
Query: 253 TDITKFIEV 261
T +E+
Sbjct: 1837 TG--WLVEI 1843
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 1e-04
Identities = 28/182 (15%), Positives = 50/182 (27%), Gaps = 60/182 (32%)
Query: 82 IMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRRE------------ 129
I+ + V + +C V + +L KE ++ I +S D
Sbjct: 21 ILSVFEDAFVDN-FDCK--DVQDMPKSILSKE---EIDHIIMSKDAVSGTLRLFWTLLSK 74
Query: 130 ------MKVNDN-AKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNG------YNVC- 175
V + +Y F + + + Q S+ T + D +N YNV
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSP-IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 176 -------------------LFAYGQTGSGKSYRGDSTLNSSVLRPRVL---FYPGFSWSH 213
+ G GSGK + + V + W +
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGK-----TWVALDVCLSYKVQCKMDFKIFWLN 188
Query: 214 SG 215
Sbjct: 189 LK 190
Score = 34.8 bits (79), Expect = 0.029
Identities = 36/261 (13%), Positives = 65/261 (24%), Gaps = 71/261 (27%)
Query: 7 PRALFSSTPVKK--NEGP-------IATLSSSNQSKPKEKFVKPATPKTPLATANYERCI 57
P+++ S + + S Q + +KFV+ NY+ +
Sbjct: 42 PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI------NYKFLM 95
Query: 58 QARRAMSADRSPATPKIKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHMD 117
+ S T R L N DN ++ V+ R +L
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRL------YN---DNQVFAKYNVS---RLQPYLKLRQA 143
Query: 118 VSSIEISPDRRE----MK-------VNDNAKSYTFKLDHC-------LGQDTDQTSVFTI 159
+ E+ P + + D SY + L +V +
Sbjct: 144 LL--ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201
Query: 160 IAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSG---- 215
+ + L N + S S ++S R L S +
Sbjct: 202 LQKLLYQIDPNW---------TSRSDHSSNIKLRIHSIQAELRRLL---KSKPYENCLLV 249
Query: 216 ----WTGWVSCVVVIAVDFGC 232
A + C
Sbjct: 250 LLNVQNAKA----WNAFNLSC 266
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 29.5 bits (65), Expect = 0.93
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 157 FTIIAQPLLDAAFNGYNVCLFAYGQTGSGKS 187
FT I P+ D+ + N + S K
Sbjct: 29 FTRIFLPIYDSLMSSQNKLFYITNADDSTKF 59
>2qs9_A Retinoblastoma-binding protein 9; B5T overexpressed gene protein,
BOG, RBBP9, RBBP10, HR2978, NESG, structural genomics,
PSI-2; 1.72A {Homo sapiens}
Length = 194
Score = 28.6 bits (63), Expect = 1.6
Identities = 4/22 (18%), Positives = 6/22 (27%)
Query: 200 RPRVLFYPGFSWSHSGWTGWVS 221
+ + PG GW
Sbjct: 4 PSKAVIVPGNGGGDVTTHGWYG 25
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus oeni}
Length = 272
Score = 27.8 bits (62), Expect = 3.3
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 12/64 (18%)
Query: 203 VLFYPGFSWSHSGWTGWVSCVV------VIAVDF-GCGSWRFESKPSHEIYLSVSVLTDI 255
++F G S + + I +D G G S P S +VL +
Sbjct: 24 IIFLHGLSLDKQSTCLFFEPLSNVGQYQRIYLDLPGMG----NSDPISPST-SDNVLETL 78
Query: 256 TKFI 259
+ I
Sbjct: 79 IEAI 82
>2llh_A Nucleophosmin; nucleolar, chaperone, oncoprotein, DNA binding
protein; NMR {Homo sapiens} PDB: 2vxd_A
Length = 74
Score = 26.0 bits (56), Expect = 3.7
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 4/55 (7%)
Query: 28 SSNQSKPKEKFVKPATPKTPLATANYERCIQARRAMSADRSPATPKIKLPRANLI 82
S Q K++ P TPK P + + I+A+ S ++ + PK++ N +
Sbjct: 2 SHMQESFKKQEKTPKTPKGPSSVED----IKAKMQASIEKGGSLPKVEAKFINYV 52
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.2 bits (59), Expect = 3.9
Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 14/41 (34%)
Query: 17 KKNEGPIATLSSSNQSKPKEKFVKPATPKT-P-LA-TANYE 54
+K + L +S +K + P LA A E
Sbjct: 18 EKQA--LKKLQAS---------LKLYADDSAPALAIKATME 47
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 27.7 bits (61), Expect = 4.3
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 160 IAQPLLDAAFNGYNVCLFAYGQTGSGKS 187
IA L +F YG TG+GK+
Sbjct: 32 IASILAPLYREEKPNNIFIYGLTGTGKT 59
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 27.2 bits (60), Expect = 4.7
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 4/17 (23%)
Query: 180 GQTGSGKSYRGDSTLNS 196
G+ G GKS ST+NS
Sbjct: 46 GKGGVGKS----STVNS 58
>3bos_A Putative DNA replication factor; P-loop containing nucleoside
triphosphate hydrolases, struct genomics; HET: MSE CDP;
1.75A {Shewanella amazonensis} PDB: 3sc3_A
Length = 242
Score = 27.2 bits (61), Expect = 5.4
Identities = 4/17 (23%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 171 GYNVCLFAYGQTGSGKS 187
G ++ +G SG++
Sbjct: 51 GVQ-AIYLWGPVKSGRT 66
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- cell division, DNA translocation,
KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas
aeruginosa} PDB: 2iuu_A*
Length = 574
Score = 27.3 bits (61), Expect = 6.0
Identities = 24/78 (30%), Positives = 30/78 (38%), Gaps = 26/78 (33%)
Query: 121 IEISPDRREM---------KVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQ-P-LLDAAF 169
IEI + R+M D KS + LG D + T +A+ P LL A
Sbjct: 166 IEIPNEDRQMVRFSEVLSSPEYDEHKS---TVPLALGHDIGGRPIITDLAKMPHLLVA-- 220
Query: 170 NGYNVCLFAYGQTGSGKS 187
G TGSGKS
Sbjct: 221 ----------GTTGSGKS 228
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition,
ATP-binding, DNA- binding, cell division, transmembrane,
inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB:
2j5p_A*
Length = 512
Score = 27.2 bits (61), Expect = 6.0
Identities = 19/78 (24%), Positives = 27/78 (34%), Gaps = 26/78 (33%)
Query: 121 IEISPDRREM---------KVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQ-P-LLDAAF 169
+E+ +R+ + S L LG+D V +A+ P LL A
Sbjct: 119 LELPNKKRQTVYLREVLDNAKFRDNPS---PLTVVLGKDIAGEPVVADLAKMPHLLVA-- 173
Query: 170 NGYNVCLFAYGQTGSGKS 187
G TGSG S
Sbjct: 174 ----------GTTGSGAS 181
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 26.7 bits (59), Expect = 6.7
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 4/17 (23%)
Query: 180 GQTGSGKSYRGDSTLNS 196
G+ G GKS ST+NS
Sbjct: 43 GKGGVGKS----STVNS 55
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 27.0 bits (59), Expect = 7.8
Identities = 7/28 (25%), Positives = 10/28 (35%)
Query: 160 IAQPLLDAAFNGYNVCLFAYGQTGSGKS 187
A + N G TG+GK+
Sbjct: 32 AAIAIRYFVKNEVKFSNLFLGLTGTGKT 59
>3zxk_A Hiaxhd3; hydrolase, sugar binding protein; HET: XYP EPE; 1.44A
{Humicola insolens} PDB: 3zxj_A* 3zxl_A*
Length = 542
Score = 26.9 bits (59), Expect = 8.3
Identities = 11/69 (15%), Positives = 18/69 (26%), Gaps = 10/69 (14%)
Query: 123 ISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAA----FNGYNVCLFA 178
I D + ++ TF D +T + F GY +F
Sbjct: 461 IDADITPAFGTNTERTTTF------YYSIDGGRTYTRLGPAFAMTNSWRYFTGYRFGVFN 514
Query: 179 YGQTGSGKS 187
+ G
Sbjct: 515 FSTKSLGGE 523
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.130 0.391
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,752,232
Number of extensions: 206424
Number of successful extensions: 511
Number of sequences better than 10.0: 1
Number of HSP's gapped: 476
Number of HSP's successfully gapped: 44
Length of query: 262
Length of database: 6,701,793
Length adjustment: 92
Effective length of query: 170
Effective length of database: 4,133,061
Effective search space: 702620370
Effective search space used: 702620370
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)