RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17370
(262 letters)
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 83.0 bits (204), Expect = 5e-19
Identities = 38/188 (20%), Positives = 63/188 (33%), Gaps = 18/188 (9%)
Query: 74 IKLPRANLIMRSSSENCVADNLECSRMTVAVRIRPLLVKELHM---------DVSSIEIS 124
IK R + + D +E R+ V VR RPL +EL + +
Sbjct: 9 IKEFRVTMECSPLTVT---DPIEEHRICVCVRKRPLNKQELAKKEIDVISVPSKCLLLVH 65
Query: 125 PDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGS 184
+ ++ + ++ F D + V+ A+PL+ F G FAYGQTGS
Sbjct: 66 EPKLKVDLTKYLENQAFCFDFAFDETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGS 125
Query: 185 GKSY------RGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRFE 238
GK++ G S S + + + V V + G
Sbjct: 126 GKTHTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDL 185
Query: 239 SKPSHEIY 246
++
Sbjct: 186 LNKKAKLR 193
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 78.4 bits (192), Expect = 2e-17
Identities = 32/105 (30%), Positives = 42/105 (40%), Gaps = 9/105 (8%)
Query: 85 SSSENCVADNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLD 144
SSS N + V R RP E+ I V+ +F D
Sbjct: 1 SSSANSI---------KVVARFRPQNRVEIESGGQPIVTFQGPDTCTVDSKEAQGSFTFD 51
Query: 145 HCLGQDTDQTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR 189
Q+ +F +P +D NGYN +FAYGQTG+GKSY
Sbjct: 52 RVFDMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYT 96
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 76.2 bits (186), Expect = 1e-16
Identities = 38/157 (24%), Positives = 65/157 (41%), Gaps = 3/157 (1%)
Query: 99 RMTVAVRIRPLLVKEL-HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQTSVF 157
++ V R+RPL KE+ + ++I + + + K+ D + Q VF
Sbjct: 1 KIRVYCRLRPLCEKEIIAKERNAIRSVDEFTVEHLWKDDKAKQHMYDRVFDGNATQDDVF 60
Query: 158 TIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWT 217
L+ +A +GYNVC+FAYGQTGSGK++ ++ L PR + F
Sbjct: 61 EDTK-YLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGLTPRAMSEL-FRIMKKDSN 118
Query: 218 GWVSCVVVIAVDFGCGSWRFESKPSHEIYLSVSVLTD 254
+ + V+ + P L + + D
Sbjct: 119 KFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKD 155
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 72.3 bits (176), Expect = 2e-15
Identities = 32/156 (20%), Positives = 55/156 (35%), Gaps = 14/156 (8%)
Query: 102 VAVRIRPLLVKELHM---------DVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTD 152
V VR RPL E + ++ I R ++ + + + F +D D
Sbjct: 4 VVVRKRPLSELEKKKKDSDIITVKNNCTLYIDEPRYKVDMTKYIERHEFIVDKVFDDTVD 63
Query: 153 QTSVF-TIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYP---- 207
+V+ I ++D NG FAYGQTGSGK+Y + +F
Sbjct: 64 NFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGIFQYAAGD 123
Query: 208 GFSWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSH 243
F++ + + + + CG +
Sbjct: 124 IFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQKRK 159
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 72.6 bits (177), Expect = 2e-15
Identities = 40/150 (26%), Positives = 65/150 (43%), Gaps = 11/150 (7%)
Query: 102 VAVRIRPLLVKEL--------HMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L E + D S++E+ + K + ++F D + Q
Sbjct: 49 VFCRIRPPLESEENRMCCTWTYHDESTVELQSIDAQAKSKMGQQIFSF--DQVFHPLSSQ 106
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSH 213
+ +F +++ PL+ +A +GYN+C+FAYGQTGSGK+Y D S + PR + S
Sbjct: 107 SDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRG 165
Query: 214 SGWTGWVSCVVVIAVDFGCGSWRFESKPSH 243
GW + ++
Sbjct: 166 YRNLGWEYEIKATFLEIYNEVLYDLLSNEQ 195
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 71.9 bits (175), Expect = 3e-15
Identities = 38/154 (24%), Positives = 61/154 (39%), Gaps = 9/154 (5%)
Query: 93 DNLECSRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVNDNAKSYTFKLDHCLGQDTD 152
D EC+ + V R RPL E++ I + + +K Y F D T
Sbjct: 1 DLAECN-IKVMCRFRPLNESEVNRGDKYIAKFQGEDTVVIA--SKPYAF--DRVFQSSTS 55
Query: 153 QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLR---PRVLFYPGF 209
Q V+ A+ ++ GYN +FAYGQT SGK++ + L+ PR++ F
Sbjct: 56 QEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDI-F 114
Query: 210 SWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSH 243
++ +S + V + R S
Sbjct: 115 NYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSK 148
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 68.1 bits (165), Expect = 7e-14
Identities = 35/93 (37%), Positives = 47/93 (50%), Gaps = 6/93 (6%)
Query: 102 VAVRIRPLLVKELHMDVSSI-EISPDRREMKV-----NDNAKSYTFKLDHCLGQDTDQTS 155
V VR RP + E SI E P R+E+ V D + T+ D G T Q
Sbjct: 4 VVVRCRPFNLAERKASAHSIVECDPVRKEVSVRTGGLADKSSRKTYTFDMVFGASTKQID 63
Query: 156 VFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSY 188
V+ + P+LD GYN +FAYGQTG+GK++
Sbjct: 64 VYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTF 96
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 65.0 bits (157), Expect = 9e-13
Identities = 45/161 (27%), Positives = 68/161 (42%), Gaps = 17/161 (10%)
Query: 98 SRMTVAVRIRPLLVKELHMDVSSIEISPDRREMKVN-----DNAKSYTFKLDHCLGQDTD 152
+ + VAVR+RP +E+ D I VN + KS++F D+ T
Sbjct: 1 ASVKVAVRVRPFNSREMSRDSKCIIQMSGSTTTIVNPKQPKETPKSFSF--DYSYWSHTS 58
Query: 153 --------QTSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR--GDSTLNSSVLRPR 202
Q V+ I + +L AF GYNVC+FAYGQTG+GKSY G + + P+
Sbjct: 59 PEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMGKQEKDQQGIIPQ 118
Query: 203 VLFYPGFSWSHSGWTGWVSCVVVIAVDFGCGSWRFESKPSH 243
+ + + V V ++ C R P +
Sbjct: 119 LCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNPKN 159
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 58.9 bits (141), Expect = 1e-10
Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)
Query: 102 VAVRIRPLLVKELHMDVSSIEISPDRREM--------KVNDNAKSYTFKLDHCLGQDTDQ 153
V RIRP L + D S I ++ K+ + A+ + FK D Q
Sbjct: 5 VYCRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTN 64
Query: 154 TSVFTIIAQPLLDAAFNGYNVCLFAYGQTGSGKSYR 189
VF + L+ ++ +GYNVC+FAYGQTGSGK++
Sbjct: 65 VDVFKEVG-QLVQSSLDGYNVCIFAYGQTGSGKTFT 99
>d2rhwa1 c.69.1.10 (A:4-286)
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
(BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Length = 283
Score = 26.3 bits (56), Expect = 3.9
Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 27/89 (30%)
Query: 166 DAAFNGYNVCLFAYGQTGSGKSYRGDSTLNSSVLRPRVLFYPGFSWSHSGWTGWVSCVV- 224
+ F+ +N+ Y + G+G V+ G GW+ + V
Sbjct: 14 EKGFSDFNI---HYNEAGNG---------------ETVIMLHGGGPGAGGWSNYYRNVGP 55
Query: 225 -------VIAVDFGCGSWRFESKPSHEIY 246
VI D G + ++ E
Sbjct: 56 FVDAGYRVILKDS-PGFNKSDAVVMDEQR 83
>d1dpea_ c.94.1.1 (A:) Dipeptide-binding protein {Escherichia coli
[TaxId: 562]}
Length = 507
Score = 25.9 bits (55), Expect = 6.1
Identities = 9/31 (29%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 114 LHMDVSSIEISPDRRE-MKVNDNAKSYTFKL 143
+ + + E+ P E +V+++ K+YTF L
Sbjct: 37 VEFKIGTTEVIPGLAEKWEVSEDGKTYTFHL 67
>d1slua_ b.16.1.1 (A:) Ecotin, trypsin inhibitor {Escherichia coli
[TaxId: 562]}
Length = 133
Score = 24.7 bits (54), Expect = 7.4
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 16 VKKNEGPIATLSSSNQSKPKEKFVKPATPKTPL 48
K P++T+ K ++KFV +
Sbjct: 65 FDKVSSPVSTMMHCPDGKKEKKFVTAYLGDAGM 97
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.130 0.391
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 920,715
Number of extensions: 40669
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 12
Length of query: 262
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 178
Effective length of database: 1,254,276
Effective search space: 223261128
Effective search space used: 223261128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)