BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17371
(237 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|B Chain B, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
pdb|3GBJ|C Chain C, Crystal Structure Of The Motor Domain Of Kinesin Kif13b
Bound With Adp
Length = 354
Score = 165 bits (417), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 140/229 (61%), Gaps = 19/229 (8%)
Query: 26 RNIFEKIGTNEFVFHFSMMGDNLDSSLKETT---GIIPRFCHQLFDQIPSN----MVAQV 78
+N F+ G N +F + G ++ T G+IPR C LF++ +V
Sbjct: 86 QNAFD--GYNACIFAYGQTGSGKSYTMMGTADQPGLIPRLCSGLFERTQKEENEEQSFKV 143
Query: 79 KISYLEIYNEFVYDLLSSE--RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNK 136
++SY+EIYNE V DLL + R+ LKVRE G +V LS V+S+ +++ +SEGNK
Sbjct: 144 EVSYMEIYNEKVRDLLDPKGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNK 203
Query: 137 ARATASTNMNDKSSRSHSIFQIQLTLT-EDTGSSVT-QKCSQINLVDLAGSERVAQTKAT 194
+R A+TNMN++SSRSH++F+I LT T D S + +K +++LVDLAGSER +T A
Sbjct: 204 SRTVAATNMNEESSRSHAVFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAA 263
Query: 195 EERFKEGRNINLSLMTLGQVITNLSDHSAVP------PYRNSTLTYLLK 237
+R KEG NIN SL TLG VI+ L+D SA PYR+S LT+LLK
Sbjct: 264 GDRLKEGSNINKSLTTLGLVISALADQSAGKNKNKFVPYRDSVLTWLLK 312
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 21/26 (80%)
Query: 1 MLATINPLQSHIEESLATLRYALQAR 26
M+AT++P + +E+L+TLRYA +A+
Sbjct: 323 MVATVSPAADNYDETLSTLRYADRAK 348
>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Adp
Length = 367
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 141/242 (58%), Gaps = 30/242 (12%)
Query: 19 LRYALQARNI----FEKIGTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS-- 72
L++A + N+ + + G + ++MMG K+ GIIP+ C LF +I
Sbjct: 82 LQHAFEGYNVCIFAYGQTGAGK---SYTMMG----KQEKDQQGIIPQLCEDLFSRINDTT 134
Query: 73 --NMVAQVKISYLEIYNEFVYDLLSSERKA-LKVRESPDTGIFVSDLSVHGVSSFSEMQK 129
NM V++SY+EIY E V DLL+ + K L+VRE P G +V DLS V+S++++Q
Sbjct: 135 NDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQD 194
Query: 130 WLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSS--VTQKCSQINLVDLAGSER 187
+ GNKAR A+TNMN+ SSRSH++F I T + T+K S+I+LVDLAGSER
Sbjct: 195 LMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSER 254
Query: 188 VAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVP------------PYRNSTLTYL 235
T A R KEG NIN SL TLG+VI+ L++ + P PYR+S LT+L
Sbjct: 255 ADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWL 314
Query: 236 LK 237
L+
Sbjct: 315 LR 316
>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|C Chain C, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|C Chain C, Kif1a Head-Microtubule Complex Structure In Adp-Form
Length = 394
Score = 163 bits (413), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 141/242 (58%), Gaps = 30/242 (12%)
Query: 19 LRYALQARNI----FEKIGTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS-- 72
L++A + N+ + + G + ++MMG K+ GIIP+ C LF +I
Sbjct: 98 LQHAFEGYNVCIFAYGQTGAGK---SYTMMG----KQEKDQQGIIPQLCEDLFSRINDTT 150
Query: 73 --NMVAQVKISYLEIYNEFVYDLLSSERKA-LKVRESPDTGIFVSDLSVHGVSSFSEMQK 129
NM V++SY+EIY E V DLL+ + K L+VRE P G +V DLS V+S++++Q
Sbjct: 151 NDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQD 210
Query: 130 WLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSS--VTQKCSQINLVDLAGSER 187
+ GNKAR A+TNMN+ SSRSH++F I T + T+K S+I+LVDLAGSER
Sbjct: 211 LMDSGNKARTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSER 270
Query: 188 VAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVP------------PYRNSTLTYL 235
T A R KEG NIN SL TLG+VI+ L++ + P PYR+S LT+L
Sbjct: 271 ADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWL 330
Query: 236 LK 237
L+
Sbjct: 331 LR 332
>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppcp
Length = 366
Score = 163 bits (412), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 96/216 (44%), Positives = 130/216 (60%), Gaps = 23/216 (10%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS----NMVAQVKISYLEIYNEFVYDLLSS 96
++MMG K+ GIIP+ C LF +I NM V++SY+EIY E V DLL+
Sbjct: 105 YTMMG----KQEKDQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160
Query: 97 ERKA-LKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSI 155
+ K L+VRE P G +V DLS V+S++++Q + GNKAR A+TNMN+ SSRSH++
Sbjct: 161 KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKARTVAATNMNETSSRSHAV 220
Query: 156 FQIQLTLTEDTGSS--VTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQ 213
F I T + T+K S+I+LVDLAGSER T A R KEG NIN SL TLG+
Sbjct: 221 FNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGK 280
Query: 214 VITNLSDHSAVP------------PYRNSTLTYLLK 237
VI+ L++ + P PYR+S LT+LL+
Sbjct: 281 VISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 316
>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFW|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Mg-Amppnp
pdb|1VFX|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-mg-alfx
pdb|1VFZ|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With
Adp-Mg-Vo4
pdb|2ZFI|A Chain A, Crystal Structure Of The Kif1a Motor Domain Before Mg
Release
pdb|2ZFJ|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-1
pdb|2ZFK|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-2
pdb|2ZFL|A Chain A, Crystal Structure Of The Kif1a Motor Domain During Mg
Release: Mg-Releasing Transition-3
pdb|2ZFM|A Chain A, Crystal Structure Of The Kif1a Motor Domain After Mg
Release
Length = 366
Score = 161 bits (408), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/242 (40%), Positives = 140/242 (57%), Gaps = 30/242 (12%)
Query: 19 LRYALQARNI----FEKIGTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS-- 72
L++A + N+ + + G + ++MMG K+ GIIP+ C LF +I
Sbjct: 82 LQHAFEGYNVCIFAYGQTGAGK---SYTMMG----KQEKDQQGIIPQLCEDLFSRINDTT 134
Query: 73 --NMVAQVKISYLEIYNEFVYDLLSSERKA-LKVRESPDTGIFVSDLSVHGVSSFSEMQK 129
NM V++SY+EIY E V DLL+ + K L+VRE P G +V DLS V+S++++Q
Sbjct: 135 NDNMSYSVEVSYMEIYCERVRDLLNPKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQD 194
Query: 130 WLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSS--VTQKCSQINLVDLAGSER 187
+ GNK R A+TNMN+ SSRSH++F I T + T+K S+I+LVDLAGSER
Sbjct: 195 LMDSGNKPRTVAATNMNETSSRSHAVFNIIFTQKRHDAETNITTEKVSKISLVDLAGSER 254
Query: 188 VAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVP------------PYRNSTLTYL 235
T A R KEG NIN SL TLG+VI+ L++ + P PYR+S LT+L
Sbjct: 255 ADSTGAKGTRLKEGANINKSLTTLGKVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWL 314
Query: 236 LK 237
L+
Sbjct: 315 LR 316
>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|B Chain B, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|C Chain C, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
pdb|2OWM|D Chain D, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3)
Length = 443
Score = 156 bits (395), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 129/236 (54%), Gaps = 49/236 (20%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS------NMVAQVKISYLEIYNEFVYDLL 94
++MMG + G+IPR C LF +I S N+ VK+SY E+YNE V DLL
Sbjct: 152 YTMMG------TPDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLL 205
Query: 95 SS-----ERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKS 149
+ LKVRESP G +V DL+ V E+ +W+ G+ +R AST MND S
Sbjct: 206 APVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTS 265
Query: 150 SRSHSIFQIQLTL------TEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRN 203
SRSH++F I L T+DT T++ S+I LVDLAGSER T+AT +R +EG N
Sbjct: 266 SRSHAVFTIMLKQIHHDLETDDT----TERSSRIRLVDLAGSERAKSTEATGQRLREGSN 321
Query: 204 INLSLMTLGQVITNLSDH----------------------SAVPPYRNSTLTYLLK 237
IN SL TLG+VI L+D ++V PYR+S LT+LLK
Sbjct: 322 INKSLTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLK 377
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
M+A I+P + +E+L+TLRYA QA+ I + N+
Sbjct: 388 MIACISP--TDYDETLSTLRYADQAKRIRTRAVVNQ 421
>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase
Mechanism And Interactions With Microtubules
Length = 355
Score = 142 bits (357), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 86/202 (42%), Positives = 124/202 (61%), Gaps = 10/202 (4%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSSE 97
++MMG ++D + G+IPR Q+F I +N+ V++SY+EIY E + DLL+ +
Sbjct: 96 YTMMGTSIDDP--DGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ 153
Query: 98 RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
L V E + G++V L VSS E+ + + G ARA A+TNMN +SSRSHSIF
Sbjct: 154 NDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFV 213
Query: 158 IQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVIT 216
I +T +TGS+ K Q+ LVDLAGSE+V +T A+ + +E + IN SL LG VI
Sbjct: 214 ITITQKNVETGSA---KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVIN 270
Query: 217 NLSD-HSAVPPYRNSTLTYLLK 237
L+D S+ PYR+S LT +L+
Sbjct: 271 ALTDGKSSHVPYRDSKLTRILQ 292
>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
pdb|3B6U|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3b In Complex With Adp
Length = 372
Score = 141 bits (355), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 89/218 (40%), Positives = 127/218 (58%), Gaps = 15/218 (6%)
Query: 33 GTNEFVFHFSMMGDNLDSSLK------ETTGIIPRFCHQLFDQIPSNMVAQ--VKISYLE 84
G N +F + G +++ E G+IP +F I + Q V+ SYLE
Sbjct: 100 GFNGTIFAYGQTGTGKTYTMEGIRGDPEKRGVIPNSFDHIFTHISRSQNQQYLVRASYLE 159
Query: 85 IYNEFVYDLLSSER-KALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATAST 143
IY E + DLLS ++ K L+++E PDTG++V DLS S E++ ++ GN+ R+ +T
Sbjct: 160 IYQEEIRDLLSKDQTKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGAT 219
Query: 144 NMNDKSSRSHSIFQIQLTLTE---DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKE 200
NMN+ SSRSH+IF I + +E D + + + ++NLVDLAGSER A+T A ER KE
Sbjct: 220 NMNEHSSRSHAIFVITIECSEVGLDGENHI--RVGKLNLVDLAGSERQAKTGAQGERLKE 277
Query: 201 GRNINLSLMTLGQVITNLSDHSAVP-PYRNSTLTYLLK 237
INLSL LG VI+ L D + PYR+S LT LL+
Sbjct: 278 ATKINLSLSALGNVISALVDGKSTHIPYRDSKLTRLLQ 315
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
M+A + P ++EE+L TLRYA +A+NI K NE
Sbjct: 326 MVANVGPASYNVEETLTTLRYANRAKNIKNKPRVNE 361
>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
pdb|1T5C|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinetochore
Protein Cenp-E
Length = 349
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 120/206 (58%), Gaps = 15/206 (7%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS--NMVAQVKISYLEIYNEFVYDLL--SS 96
++MMG ++ G+IPR H +F +I + +++SY+EIYNE + DLL +
Sbjct: 93 YTMMGS------EDHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQ 146
Query: 97 ERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIF 156
+ K L +RE + ++V+DL+ V + KW+++G K+R T MN +SSRSH+IF
Sbjct: 147 KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIF 206
Query: 157 QIQLTLTEDTGSSVTQ---KCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQ 213
++ L E S + K S +NLVDLAGSER AQT A R KEG NIN SL LGQ
Sbjct: 207 RMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQ 266
Query: 214 VITNLSDH--SAVPPYRNSTLTYLLK 237
VI LSD YR+S LT +L+
Sbjct: 267 VIKKLSDGQVGGFINYRDSKLTRILQ 292
>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
pdb|2VVG|B Chain B, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a
Motor Domain
Length = 350
Score = 137 bits (344), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/211 (40%), Positives = 121/211 (57%), Gaps = 7/211 (3%)
Query: 33 GTNEFVFHFSMMGDNLDSSL---KETTGIIPRFCHQLFDQIPSNMVAQ---VKISYLEIY 86
G N +F + G ++ KE G IP LFD I S+ Q V SYLE+Y
Sbjct: 88 GFNSTIFAYGQTGAGKTWTMGGNKEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELY 147
Query: 87 NEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMN 146
NE + DL+ + K L ++E GI+V LS+H V++ +E+ + +G R A+T MN
Sbjct: 148 NEEIRDLIKNNTK-LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMN 206
Query: 147 DKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINL 206
D SSRSHSIF +++ +E + + ++NLVDLAGSER ++T AT E EG INL
Sbjct: 207 DTSSRSHSIFMVRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINL 266
Query: 207 SLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
SL LG VI+ L + + PYR+S LT LL+
Sbjct: 267 SLSALGLVISKLVEGATHIPYRDSKLTRLLQ 297
Score = 32.7 bits (73), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
M A I+P ++ +E+++TLRYA +A+ I K NE
Sbjct: 308 MCANISPASTNYDETMSTLRYADRAKQIKNKPRINE 343
>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|C Chain C, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 373
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 13/191 (6%)
Query: 57 GIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLLS-----SERKALKVRESP--D 108
GIIPR HQ+F+++ N VK+S LEIYNE ++DLL+ SER L++ + P
Sbjct: 134 GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSER--LQMFDDPRNK 191
Query: 109 TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDT-- 166
G+ + L V + E+ + L +G R TA+T MN SSRSHS+F + + + E T
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 167 GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPP 226
G + K ++NLVDLAGSE + ++ A ++R +E NIN SL+TLG+VIT L + + P
Sbjct: 252 GEELV-KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVP 310
Query: 227 YRNSTLTYLLK 237
YR S LT +L+
Sbjct: 311 YRESKLTRILQ 321
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ATI+P ++EE+L+TL YA +A+NI K N+
Sbjct: 332 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A1Z|A Chain A, Eg5-1
pdb|4A1Z|B Chain B, Eg5-1
Length = 368
Score = 127 bits (320), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 85/212 (40%), Positives = 127/212 (59%), Gaps = 18/212 (8%)
Query: 41 FSMMGD---NLDSSLKET--TGIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLL 94
F+M G+ N + + +E GIIPR HQ+F+++ N VK+S LEIYNE ++DLL
Sbjct: 113 FTMEGERSPNEEYTWEEVPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL 172
Query: 95 S-----SERKALKVRESP--DTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMND 147
+ SER L++ + P G+ + L V + E+ + L +G R TA+T MN
Sbjct: 173 NPSSDVSER--LQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNA 230
Query: 148 KSSRSHSIFQIQLTLTEDT--GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNIN 205
SSRSHS+F + + + E T G + K ++NLVDLAGSE + ++ A ++R +E NIN
Sbjct: 231 YSSRSHSVFSVTIHMKETTIDGEELV-KIGKLNLVDLAGSENIGRSGAVDKRAREAGNIN 289
Query: 206 LSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
SL+TLG+VIT L + + PYR S LT +L+
Sbjct: 290 QSLLTLGRVITALVERTPHVPYRESKLTRILQ 321
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ATI+P ++EE+L+TL YA +A+NI K N+
Sbjct: 332 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
pdb|1X88|B Chain B, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol
Length = 359
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 13/191 (6%)
Query: 57 GIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLLS-----SERKALKVRESP--D 108
GIIPR HQ+F+++ N VK+S LEIYNE ++DLL+ SER L++ + P
Sbjct: 125 GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSER--LQMFDDPRNK 182
Query: 109 TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDT-- 166
G+ + L V + E+ + L +G R TA+T MN SSRSHS+F + + + E T
Sbjct: 183 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 242
Query: 167 GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPP 226
G + K ++NLVDLAGSE + ++ A ++R +E NIN SL+TLG+VIT L + + P
Sbjct: 243 GEELV-KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVP 301
Query: 227 YRNSTLTYLLK 237
YR S LT +L+
Sbjct: 302 YRESKLTRILQ 312
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ATI+P ++EE+L+TL YA +A+NI K N+
Sbjct: 323 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 358
>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1II6|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp.
pdb|1YRS|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|1YRS|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2FME|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2FME|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 (ksp) In
Complex With Mg-adp And (r)-4-(3-hydroxyphenyl)-n,n,7,8-
Tetramethyl-3,4-dihydroisoquinoline-2(1h)-carboxamide
pdb|2GM1|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|B Chain B, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|D Chain D, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2GM1|E Chain E, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex
With Mg-Adp And
N-(3-Aminopropyl)-N-((3-Benzyl-5-Chloro-4-
Oxo-3,4-Dihydropyrrolo[2,1-F][1,2,4]triazin-2-Yl)
(Cyclopropyl)methyl)-4-Methylbenzamide
pdb|2G1Q|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2G1Q|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 9h
pdb|2PG2|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2PG2|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 15
pdb|2UYI|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYI|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 33
pdb|2UYM|A Chain A, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|2UYM|B Chain B, Crystal Structure Of Ksp In Complex With Adp And Thiophene
Containing Inhibitor 37
pdb|3K5E|A Chain A, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K5E|B Chain B, The Structure Of Human Kinesin-Like Motor Protein
Kif11KSPEG5 IN COMPLEX WITH ADP AND ENASTROL.
pdb|3K3B|A Chain A, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3K3B|B Chain B, Co-crystal Structure Of The Human Kinesin Eg5 With A Novel
Tetrahydro- Beta-carboline
pdb|3L9H|A Chain A, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|3L9H|B Chain B, X-Ray Structure Of Mitotic Kinesin-5 (Ksp, Kif11, Eg5)in
Complex With The Hexahydro-2h-Pyrano[3,2-C]quinoline Emd
534085
pdb|2X7C|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7C|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Enastron
pdb|2X7D|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7D|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(S)-Dimethylenastron
pdb|2X7E|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2X7E|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-Fluorastrol
pdb|2WOG|A Chain A, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|B Chain B, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2WOG|C Chain C, Intermediate And Final States Of Human Kinesin Eg5 In
Complex With S-Trityl-L-Cysteine
pdb|2X2R|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2X2R|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((4-
Chlorophenyl)diphenylmethylthio)propanoic Acid
pdb|2XAE|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|2XAE|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)-2-Amino-3-((S)-2-Methyl-1,
1-Diphenylbutylthio)propanoic Acid
pdb|4A50|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
2-amino-5-(3-methylphenyl)-5,5-diphenylpentanoic Acid
pdb|4A51|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|C Chain C, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|D Chain D, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|E Chain E, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|F Chain F, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A51|G Chain G, Crystal Structure Of Human Kinesin Eg5 In Complex With
1-(3-(((2-aminoethyl)thio)diphenylmethyl)phenyl)ethanone
Hydrochloride
pdb|4A5Y|A Chain A, Eg5-Inhibitor Complex
pdb|4A5Y|B Chain B, Eg5-Inhibitor Complex
pdb|4A5Y|C Chain C, Eg5-Inhibitor Complex
Length = 368
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 13/191 (6%)
Query: 57 GIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLLS-----SERKALKVRESP--D 108
GIIPR HQ+F+++ N VK+S LEIYNE ++DLL+ SER L++ + P
Sbjct: 134 GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSER--LQMFDDPRNK 191
Query: 109 TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDT-- 166
G+ + L V + E+ + L +G R TA+T MN SSRSHS+F + + + E T
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 167 GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPP 226
G + K ++NLVDLAGSE + ++ A ++R +E NIN SL+TLG+VIT L + + P
Sbjct: 252 GEELV-KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVP 310
Query: 227 YRNSTLTYLLK 237
YR S LT +L+
Sbjct: 311 YRESKLTRILQ 321
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ATI+P ++EE+L+TL YA +A+NI K N+
Sbjct: 332 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3HQD|B Chain B, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And
Mg2+
pdb|3KEN|A Chain A, Human Eg5 In Complex With S-Trityl-L-Cysteine
Length = 369
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 13/191 (6%)
Query: 57 GIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLLS-----SERKALKVRESP--D 108
GIIPR HQ+F+++ N VK+S LEIYNE ++DLL+ SER L++ + P
Sbjct: 134 GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSER--LQMFDDPRNK 191
Query: 109 TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDT-- 166
G+ + L V + E+ + L +G R TA+T MN SSRSHS+F + + + E T
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 167 GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPP 226
G + K ++NLVDLAGSE + ++ A ++R +E NIN SL+TLG+VIT L + + P
Sbjct: 252 GEELV-KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVP 310
Query: 227 YRNSTLTYLLK 237
YR S LT +L+
Sbjct: 311 YRESKLTRILQ 321
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ATI+P ++EE+L+TL YA +A+NI K N+
Sbjct: 332 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|4A28|A Chain A, Eg5-2
pdb|4A28|B Chain B, Eg5-2
Length = 368
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 13/191 (6%)
Query: 57 GIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLLS-----SERKALKVRESP--D 108
GIIPR HQ+F+++ N VK+S LEIYNE ++DLL+ SER L++ + P
Sbjct: 134 GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSER--LQMFDDPRNK 191
Query: 109 TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDT-- 166
G+ + L V + E+ + L +G R TA+T MN SSRSHS+F + + + E T
Sbjct: 192 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 251
Query: 167 GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPP 226
G + K ++NLVDLAGSE + ++ A ++R +E NIN SL+TLG+VIT L + + P
Sbjct: 252 GEELV-KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVP 310
Query: 227 YRNSTLTYLLK 237
YR S LT +L+
Sbjct: 311 YRESKLTRILQ 321
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ATI+P ++EE+L+TL YA +A+NI K N+
Sbjct: 332 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 367
>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|1Q0B|B Chain B, Crystal Structure Of The Motor Protein Ksp In Complex With
Adp And Monastrol
pdb|2FKY|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FKY|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 13
pdb|2FL2|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL2|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 19
pdb|2FL6|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2FL6|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 6
pdb|2IEH|A Chain A, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2IEH|B Chain B, Crystal Structure Of Human Kinesin Eg5 In Complex With
(R)- Mon97, A New Monastrol-Based Inhibitor That Binds
As (R)- Enantiomer
pdb|2Q2Y|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Y|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 1
pdb|2Q2Z|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|2Q2Z|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 22
pdb|3CJO|A Chain A, Crystal Structure Of Ksp In Complex With Inhibitor 30
pdb|3CJO|B Chain B, Crystal Structure Of Ksp In Complex With Inhibitor 30
Length = 367
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 13/191 (6%)
Query: 57 GIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLLS-----SERKALKVRESP--D 108
GIIPR HQ+F+++ N VK+S LEIYNE ++DLL+ SER L++ + P
Sbjct: 133 GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSER--LQMFDDPRNK 190
Query: 109 TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDT-- 166
G+ + L V + E+ + L +G R TA+T MN SSRSHS+F + + + E T
Sbjct: 191 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 250
Query: 167 GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPP 226
G + K ++NLVDLAGSE + ++ A ++R +E NIN SL+TLG+VIT L + + P
Sbjct: 251 GEELV-KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVP 309
Query: 227 YRNSTLTYLLK 237
YR S LT +L+
Sbjct: 310 YRESKLTRILQ 320
Score = 35.8 bits (81), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ATI+P ++EE+L+TL YA +A+NI K N+
Sbjct: 331 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 366
>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|B Chain B, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|C Chain C, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
pdb|4AP0|D Chain D, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And
Ispinesib
Length = 370
Score = 127 bits (319), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 13/191 (6%)
Query: 57 GIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLLS-----SERKALKVRESP--D 108
GIIPR HQ+F+++ N VK+S LEIYNE ++DLL+ SER L++ + P
Sbjct: 136 GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSER--LQMFDDPRNK 193
Query: 109 TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDT-- 166
G+ + L V + E+ + L +G R TA+T MN SSRSHS+F + + + E T
Sbjct: 194 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 253
Query: 167 GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPP 226
G + K ++NLVDLAGSE + ++ A ++R +E NIN SL+TLG+VIT L + + P
Sbjct: 254 GEELV-KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVP 312
Query: 227 YRNSTLTYLLK 237
YR S LT +L+
Sbjct: 313 YRESKLTRILQ 323
Score = 35.4 bits (80), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 26/36 (72%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ATI+P ++EE+L+TL YA +A+NI K N+
Sbjct: 334 IIATISPASLNLEETLSTLEYAHRAKNILNKPEVNQ 369
>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site
Length = 348
Score = 127 bits (319), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 80/191 (41%), Positives = 117/191 (61%), Gaps = 13/191 (6%)
Query: 57 GIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLLS-----SERKALKVRESP--D 108
GIIPR HQ+F+++ N VK+S LEIYNE ++DLL+ SER L++ + P
Sbjct: 119 GIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSER--LQMFDDPRNK 176
Query: 109 TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDT-- 166
G+ + L V + E+ + L +G R TA+T MN SSRSHS+F + + + E T
Sbjct: 177 RGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTID 236
Query: 167 GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPP 226
G + K ++NLVDLAGSE + ++ A ++R +E NIN SL+TLG+VIT L + + P
Sbjct: 237 GEELV-KIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVP 295
Query: 227 YRNSTLTYLLK 237
YR S LT +L+
Sbjct: 296 YRESKLTRILQ 306
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEK 31
++ATI+P ++EE+L+TL YA +A+NI K
Sbjct: 317 IIATISPASLNLEETLSTLEYAHRAKNILNK 347
>pdb|3LRE|A Chain A, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
pdb|3LRE|B Chain B, Crystal Structure Analysis Of Human Kinesin-8 Motor Domain
Length = 355
Score = 127 bits (318), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 76/179 (42%), Positives = 105/179 (58%), Gaps = 7/179 (3%)
Query: 64 HQLFDQIPSNMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSS 123
++ D+I + +SYLE+YNE + DLL + L VRE G+ V L++H S
Sbjct: 141 YKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNS-GPLAVREDTQKGVVVHGLTLHQPKS 199
Query: 124 FSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQ--KCSQINLVD 181
E+ L GNK R T+MN SSRSH++FQI L +D +S+ Q + ++++L+D
Sbjct: 200 SEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQIYLR-QQDKTASINQNVRIAKMSLID 258
Query: 182 LAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSD---HSAVPPYRNSTLTYLLK 237
LAGSER + + A RF EG NIN SL+ LG VI L+D + PYRNS LT LLK
Sbjct: 259 LAGSERASTSGAKGTRFVEGTNINRSLLALGNVINALADSKRKNQHIPYRNSKLTRLLK 317
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 120 bits (301), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 88/240 (36%), Positives = 123/240 (51%), Gaps = 35/240 (14%)
Query: 33 GTNEFVFHFSMMGDNLDSSLK------ETTGIIPRFCHQLFDQIPSNMVAQ--VKISYLE 84
G N VF + G +++ E G+IP +F I + Q V+ SYLE
Sbjct: 100 GFNGTVFAYGQTGTGKTYTMQGTWVEPELRGVIPNAFEHIFTHISRSQNQQYLVRASYLE 159
Query: 85 IYNEFVYDLLSSER-KALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATAST 143
IY E + DLLS E K L+++E+P+TG+++ DLS + E++ ++ GN+ RA ST
Sbjct: 160 IYQEEIRDLLSKEPGKRLELKENPETGVYIKDLSSFVTKNVKEIEHVMNLGNQTRAVGST 219
Query: 144 NMNDKSSRSHSIFQIQLTLTEDTGSSVTQ-KCSQINLVDLAGSER-------VAQTKATE 195
+MN+ SSRSH+IF I + +E + ++NLVDLAGSER A AT
Sbjct: 220 HMNEVSSRSHAIFIITVECSERGSDGQDHIRVGKLNLVDLAGSERQNKAGPNTAGGAATP 279
Query: 196 -----------------ERFKEGRNINLSLMTLGQVITNLS-DHSAVPPYRNSTLTYLLK 237
ER KE INLSL LG VI L+ + S PYR+S LT LL+
Sbjct: 280 SSGGGGGGGGSGGGAGGERPKEASKINLSLSALGNVIAALAGNRSTHIPYRDSKLTRLLQ 339
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
M+AT+ P +ESL+TLR+A +A+NI K NE
Sbjct: 350 MVATLGPASHSYDESLSTLRFANRAKNIKNKPRVNE 385
>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain
pdb|2P4N|K Chain K, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 325
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 105/188 (55%), Gaps = 7/188 (3%)
Query: 54 ETTGIIPRFCHQLFDQIPS---NMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTG 110
E GIIPR +F+ I S N+ +K+SY EIY + + DLL + L V E +
Sbjct: 103 EGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRV 162
Query: 111 IFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSV 170
+V + V S E+ + EG R A TNMN+ SSRSHSIF I + + +
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINV---KQENTQT 219
Query: 171 TQKCS-QINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRN 229
QK S ++ LVDLAGSE+V++T A E +NIN SL LG VI+ L++ S PYR+
Sbjct: 220 EQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRD 279
Query: 230 STLTYLLK 237
S +T +L+
Sbjct: 280 SKMTRILQ 287
>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker
Length = 349
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 105/188 (55%), Gaps = 7/188 (3%)
Query: 54 ETTGIIPRFCHQLFDQIPS---NMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTG 110
E GIIPR +F+ I S N+ +K+SY EIY + + DLL + L V E +
Sbjct: 103 EGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRV 162
Query: 111 IFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSV 170
+V + V S E+ + EG R A TNMN+ SSRSHSIF I + + +
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINV---KQENTQT 219
Query: 171 TQKCS-QINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRN 229
QK S ++ LVDLAGSE+V++T A E +NIN SL LG VI+ L++ S PYR+
Sbjct: 220 EQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRD 279
Query: 230 STLTYLLK 237
S +T +L+
Sbjct: 280 SKMTRILQ 287
>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
Length = 340
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 75/188 (39%), Positives = 105/188 (55%), Gaps = 7/188 (3%)
Query: 54 ETTGIIPRFCHQLFDQIPS---NMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTG 110
E GIIPR +F+ I S N+ +K+SY EIY + + DLL + L V E +
Sbjct: 103 EGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLSVHEDKNRV 162
Query: 111 IFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSV 170
+V + V S E+ + EG R A TNMN+ SSRSHSIF I + + +
Sbjct: 163 PYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFLINV---KQENTQT 219
Query: 171 TQKCS-QINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRN 229
QK S ++ LVDLAGSE+V++T A E +NIN SL LG VI+ L++ S PYR+
Sbjct: 220 EQKLSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISALAEGSTYVPYRD 279
Query: 230 STLTYLLK 237
S +T +L+
Sbjct: 280 SKMTRILQ 287
>pdb|2WBE|C Chain C, Kinesin-5-Tubulin Complex With Amppnp
Length = 373
Score = 115 bits (287), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/191 (42%), Positives = 114/191 (59%), Gaps = 14/191 (7%)
Query: 57 GIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLLSSERKALKVRESPDT----GI 111
GIIPR LFD++ V ++ISYLE+YNE + DLLS++ K+R D+ +
Sbjct: 137 GIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLLSTD-DTTKIRIFDDSTKKGSV 195
Query: 112 FVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTED--TGSS 169
+ L V S ++ K L +G + R TA+T MN +SSRSH++F I + + E+ G
Sbjct: 196 IIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSRSHTVFSIVVHIRENGIEGED 255
Query: 170 VTQKCSQINLVDLAGSERVAQTKATEE---RFKEGRNINLSLMTLGQVITNLSDHSAVPP 226
+ K ++NLVDLAGSE V+ KA E R +E NIN SL+TLG+VIT L D + P
Sbjct: 256 ML-KIGKLNLVDLAGSENVS--KAGNEKGIRVRETVNINQSLLTLGRVITALVDRAPHVP 312
Query: 227 YRNSTLTYLLK 237
YR S LT LL+
Sbjct: 313 YRESKLTRLLQ 323
Score = 35.4 bits (80), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 25/36 (69%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ATI+P IEE+L+TL YA +A+NI K N+
Sbjct: 334 IIATISPGHKDIEETLSTLEYAHRAKNIQNKPEVNQ 369
>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In
Complex With Adp
Length = 359
Score = 112 bits (279), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 81/207 (39%), Positives = 109/207 (52%), Gaps = 15/207 (7%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSS- 96
++MMG + + GI+PR Q+F I P++ + V++SYLEIYNE ++DLLS+
Sbjct: 120 YTMMGATENYKHR---GILPRALQQVFRMIEERPTHAIT-VRVSYLEIYNESLFDLLSTL 175
Query: 97 -----ERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSR 151
+ + E+P G+F+ LSVH S + L EG R AS MN SSR
Sbjct: 176 PYVGPSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSR 234
Query: 152 SHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTL 211
SH IF I L T S S+INLVDLAGSER+ ++ + + KE IN SL L
Sbjct: 235 SHCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFL 294
Query: 212 GQVITNLSDHSAVP-PYRNSTLTYLLK 237
Q I L D P+R LT+ LK
Sbjct: 295 EQAIIALGDQKRDHIPFRQCKLTHALK 321
>pdb|4H1G|A Chain A, Structure Of Candida Albicans Kar3 Motor Domain Fused To
Maltose- Binding Protein
Length = 715
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 120/218 (55%), Gaps = 18/218 (8%)
Query: 33 GTNEFVFHFSMMGDNLDSSLKE-TTGIIPRFCHQLFDQIP----SNMVAQVKISYLEIYN 87
GTN VF + G ++ T G+IP ++F+ I V+ ++EIYN
Sbjct: 461 GTNVCVFAYGQTGSGKTFTMSHPTNGMIPLSLKKIFNDIEELKEKGWSYTVRGKFIEIYN 520
Query: 88 EFVYDLLSSE---RKALKVRESPDTG-IFVSDLSVHGVSSFSEMQKWLSEGNKARATAST 143
E + DLL+ + +++ G V+++S + S + L++ NK R+TA+T
Sbjct: 521 EAIVDLLNPKIDPNTKYEIKHDDIAGKTTVTNVSTIDIKSPEQAITILNQANKKRSTAAT 580
Query: 144 NMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCS--QINLVDLAGSERVAQTKATEERFKEG 201
ND SSRSHSIF I L +S+T++ S +NL+DLAGSER+ ++A +R KE
Sbjct: 581 KSNDHSSRSHSIFIIDLQ----GYNSLTKESSYGTLNLIDLAGSERLNNSRAEGDRLKET 636
Query: 202 RNINLSLMTLGQVI--TNLSDHSAVPPYRNSTLTYLLK 237
+ IN SL LG VI NL D S V PYRNS LTYLLK
Sbjct: 637 QAINKSLSCLGDVIHSLNLKDGSHV-PYRNSKLTYLLK 673
>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster
Length = 420
Score = 110 bits (274), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 114/213 (53%), Gaps = 15/213 (7%)
Query: 33 GTNEFVFHFSMMGDNLDSSLK---ETTGIIPRFCHQLFDQIPS----NMVAQVKISYLEI 85
G N +F + G ++ E+ G+IPR LFD I ++K ++LEI
Sbjct: 145 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 204
Query: 86 YNEFVYDLLSSERKALKVRESPD--TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATAST 143
YNE +YDLLS+E+K +++R + + I+VS+++ V + ++ + RATAST
Sbjct: 205 YNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATAST 264
Query: 144 NMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRN 203
N++SSRSH++ +++L ++ INLVDLAGSE + T R E +N
Sbjct: 265 AGNERSSRSHAVTKLELIGRHAEKQEIS--VGSINLVDLAGSE----SPKTSTRMTETKN 318
Query: 204 INLSLMTLGQVITNLSDHSAVPPYRNSTLTYLL 236
IN SL L VI L PYRNS LT+LL
Sbjct: 319 INRSLSELTNVILALLQKQDHIPYRNSKLTHLL 351
>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|B Chain B, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|C Chain C, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
pdb|1CZ7|D Chain D, The Crystal Structure Of A Minus-End Directed Microtubule
Motor Protein Ncd Reveals Variable Dimer Conformations
Length = 406
Score = 110 bits (274), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 114/213 (53%), Gaps = 15/213 (7%)
Query: 33 GTNEFVFHFSMMGDNLDSSLK---ETTGIIPRFCHQLFDQIPS----NMVAQVKISYLEI 85
G N +F + G ++ E+ G+IPR LFD I ++K ++LEI
Sbjct: 131 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 190
Query: 86 YNEFVYDLLSSERKALKVRESPD--TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATAST 143
YNE +YDLLS+E+K +++R + + I+VS+++ V + ++ + RATAST
Sbjct: 191 YNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATAST 250
Query: 144 NMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRN 203
N++SSRSH++ +++L ++ INLVDLAGSE + T R E +N
Sbjct: 251 AGNERSSRSHAVTKLELIGRHAEKQEIS--VGSINLVDLAGSE----SPKTSTRMTETKN 304
Query: 204 INLSLMTLGQVITNLSDHSAVPPYRNSTLTYLL 236
IN SL L VI L PYRNS LT+LL
Sbjct: 305 INRSLSELTNVILALLQKQDHIPYRNSKLTHLL 337
>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d
pdb|3U06|B Chain B, Crystal Structure Of The Kinesin-14 Ncdg347d
Length = 412
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 114/213 (53%), Gaps = 15/213 (7%)
Query: 33 GTNEFVFHFSMMGDNLDSSLK---ETTGIIPRFCHQLFDQIPS----NMVAQVKISYLEI 85
G N +F + G ++ E+ G+IPR LFD I ++K ++LEI
Sbjct: 137 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 196
Query: 86 YNEFVYDLLSSERKALKVRESPD--TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATAST 143
YNE +YDLLS+E+K +++R + + I+VS+++ V + ++ + RATAST
Sbjct: 197 YNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATAST 256
Query: 144 NMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRN 203
N++SSRSH++ +++L ++ INLVDLAGSE + T R E +N
Sbjct: 257 AGNERSSRSHAVTKLELIGRHAEKQEIS--VGSINLVDLAGSE----SPKTSTRMTETKN 310
Query: 204 INLSLMTLGQVITNLSDHSAVPPYRNSTLTYLL 236
IN SL L VI L PYRNS LT+LL
Sbjct: 311 INRSLSELTNVILALLQKQDHIPYRNSKLTHLL 343
>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant
pdb|3L1C|B Chain B, Kinesin-14 Protein Ncd, T436s Mutant
Length = 383
Score = 109 bits (273), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 76/213 (35%), Positives = 114/213 (53%), Gaps = 15/213 (7%)
Query: 33 GTNEFVFHFSMMGDNLDSSLK---ETTGIIPRFCHQLFDQIPS----NMVAQVKISYLEI 85
G N +F + G ++ E+ G+IPR LFD I ++K ++LEI
Sbjct: 134 GYNICIFAYGQSGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 193
Query: 86 YNEFVYDLLSSERKALKVRESPD--TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATAST 143
YNE +YDLLS+E+K +++R + + I+VS+++ V + ++ + RATAST
Sbjct: 194 YNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATAST 253
Query: 144 NMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRN 203
N++SSRSH++ +++L ++ INLVDLAGSE + T R E +N
Sbjct: 254 AGNERSSRSHAVTKLELIGRHAEKQEIS--VGSINLVDLAGSE----SPKTSTRMTETKN 307
Query: 204 INLSLMTLGQVITNLSDHSAVPPYRNSTLTYLL 236
IN SL L VI L PYRNS LT+LL
Sbjct: 308 INRSLSELTNVILALLQKQDHIPYRNSKLTHLL 340
>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex
With Adp
Length = 330
Score = 109 bits (272), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/215 (35%), Positives = 113/215 (52%), Gaps = 13/215 (6%)
Query: 33 GTNEFVFHFSMMGDNLDSSLK---ETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIY 86
G N +F + G +++ E GI R LF ++ S+ + +S EIY
Sbjct: 79 GFNVCIFAYGQTGAGKTYTMEGTAENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIY 138
Query: 87 NEFVYDLLSSE-RKALKVRESPDTG--IFVSDLSVHGVSSFSEMQKWLSEGNKARATAST 143
NE + DLL E ++ L++R PD ++V L+ V S ++ K G+ R T T
Sbjct: 139 NEVLRDLLGKEPQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFT 198
Query: 144 NMNDKSSRSHSIFQIQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGR 202
N+N+ SSRSH++ + + + TG T K +NLVDLAGSERV ++ A R +E +
Sbjct: 199 NLNEHSSRSHALLIVTVRGVDCSTGLRTTGK---LNLVDLAGSERVGKSGAEGSRLREAQ 255
Query: 203 NINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
+IN SL LG VI L P+RNS LTYLL+
Sbjct: 256 HINKSLSALGDVIAALRSRQGHVPFRNSKLTYLLQ 290
>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y5W|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer
pdb|2Y65|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|B Chain B, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|C Chain C, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
pdb|2Y65|D Chain D, Crystal Structure Of Drosophila Melanogaster Kinesin-1
Motor Domain Dimer-Tail Complex
Length = 365
Score = 109 bits (272), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 106/185 (57%), Gaps = 6/185 (3%)
Query: 57 GIIPRFCHQLFDQIPS---NMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFV 113
GIIPR + +F+ I + N+ +K+SY EIY + + DLL + L V E + +V
Sbjct: 113 GIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVSKVNLSVHEDKNRVPYV 172
Query: 114 SDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQK 173
+ VSS ++ + + EG R A TNMN+ SSRSHS+F I + ++ + +
Sbjct: 173 KGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFLIN--VKQENLENQKKL 230
Query: 174 CSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVP-PYRNSTL 232
++ LVDLAGSE+V++T A E +NIN SL LG VI+ L+D + PYR+S L
Sbjct: 231 SGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISALADGNKTHIPYRDSKL 290
Query: 233 TYLLK 237
T +L+
Sbjct: 291 TRILQ 295
>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 77/227 (33%), Positives = 113/227 (49%), Gaps = 22/227 (9%)
Query: 33 GTNEFVFHFSMMGDN---------LDSSLKETTGIIPRFCHQLFDQIPSN--MVAQVKIS 81
G N VF + G + S L++ GI+PR + F I N + V +S
Sbjct: 82 GFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVS 141
Query: 82 YLEIYNEFVYDLL--SSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARA 139
YLE+Y E DLL + + +++RE + + + V E+ L GN AR
Sbjct: 142 YLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARH 201
Query: 140 TASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKC------SQINLVDLAGSERVAQTKA 193
T +T++N SSRSH++F + L S + + S+ + VDLAGSERV +T +
Sbjct: 202 TGATHLNHLSSRSHTVFTVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGS 261
Query: 194 TEERFKEGRNINLSLMTLGQVITNLSD---HSAVPPYRNSTLTYLLK 237
T ER KE IN SL+ LG VI+ L D + PYR+S +T +LK
Sbjct: 262 TGERLKESIQINSSLLALGNVISALGDPQRRGSHIPYRDSKITRILK 308
>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
pdb|1N6M|B Chain B, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL
Structure Of The Kinesin Motor Protein, Ncd
Length = 409
Score = 107 bits (268), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 75/213 (35%), Positives = 113/213 (53%), Gaps = 15/213 (7%)
Query: 33 GTNEFVFHFSMMGDNLDSSLK---ETTGIIPRFCHQLFDQIPS----NMVAQVKISYLEI 85
G N +F + G ++ E+ G+IPR LFD I ++K ++LEI
Sbjct: 134 GYNICIFAYGQTGSGKTYTMDGVPESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEI 193
Query: 86 YNEFVYDLLSSERKALKVRESPD--TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATAST 143
YNE +YDLLS+E+K +++R + + I+VS+++ V + ++ + RATAST
Sbjct: 194 YNEVLYDLLSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATAST 253
Query: 144 NMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRN 203
N++SSRSH++ +++L ++ INLVDLAGSE + T R E +N
Sbjct: 254 AGNERSSRSHAVTKLELIGRHAEKQEIS--VGSINLVDLAGSE----SPKTSTRMTETKN 307
Query: 204 INLSLMTLGQVITNLSDHSAVPPYRNSTLTYLL 236
I SL L VI L PYRNS LT+LL
Sbjct: 308 IKRSLSELTNVILALLQKQDHIPYRNSKLTHLL 340
>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling
Length = 344
Score = 104 bits (259), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 112/227 (49%), Gaps = 22/227 (9%)
Query: 33 GTNEFVFHFSMMGDN---------LDSSLKETTGIIPRFCHQLFDQIPSN--MVAQVKIS 81
G N VF + G + S L++ GI+PR + F I N + V +S
Sbjct: 82 GFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVS 141
Query: 82 YLEIYNEFVYDLL--SSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARA 139
YLE+Y E DLL + + +++RE + + + V E+ L GN AR
Sbjct: 142 YLEVYKEEFRDLLEVGTASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARH 201
Query: 140 TASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKC------SQINLVDLAGSERVAQTKA 193
T +T++N SSRSH++F + L S + + S+ + VDLAGSERV +T +
Sbjct: 202 TGATHLNHLSSRSHTVFTVTLKQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGS 261
Query: 194 TEERFKEGRNINLSLMTLGQVITNLSD---HSAVPPYRNSTLTYLLK 237
T E KE IN SL+ LG VI+ L D + PYR+S +T +LK
Sbjct: 262 TGELRKESIQINSSLLALGNVISALGDPQRRGSNIPYRDSKITRILK 308
>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From
Ashbya Gossypii
Length = 349
Score = 103 bits (256), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 77/242 (31%), Positives = 124/242 (51%), Gaps = 33/242 (13%)
Query: 26 RNIFEKI---------GTNEFVFHFSMMGDNLDSS-LKETTGIIPRFCHQLFDQIPSNMV 75
+ IFE+I G N +F + G + L G+IP +F + +N+
Sbjct: 68 KEIFEEIRQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAGDGMIPMTLSHIF-KWTANLK 126
Query: 76 A-----QVKISYLEIYNEFVYDLLSSERKALKVRESPDT------------GIFVSDLSV 118
+++ Y+EIYNE + DLL + + E D+ G ++++++
Sbjct: 127 ERGWNYEMECEYIEIYNETILDLLRDFKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTR 186
Query: 119 HGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQIN 178
++S S++ L + +K R+TA+T N++SSRSHS+F + + +Q ++N
Sbjct: 187 MKMTSTSQVDTILKKASKMRSTAATRSNERSSRSHSVFMVHINGRNLHTGETSQ--GKLN 244
Query: 179 LVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVP---PYRNSTLTYL 235
LVDLAGSER+ + T ER +E +NIN SL LG VI L+ A P+RNS LTYL
Sbjct: 245 LVDLAGSERINSSAVTGERLRETQNINKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYL 304
Query: 236 LK 237
L+
Sbjct: 305 LQ 306
>pdb|3BFN|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 22
Length = 388
Score = 100 bits (248), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 14/222 (6%)
Query: 26 RNIFEKIGTNEFVFHFSMMGDNLDSSL---KETTGIIPRFCHQLFDQIPSNMVAQ----- 77
R++ E G N V + G ++ E G+IPR L Q+ A+
Sbjct: 92 RHLLE--GQNASVLAYGPTGAGKTHTMLGSPEQPGVIPRALMDLL-QLTREEGAEGRPWA 148
Query: 78 --VKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGN 135
V +SYLEIY E V DLL L +RE I + LS +SSF++ ++ +
Sbjct: 149 LSVTMSYLEIYQEKVLDLLDPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPAS 208
Query: 136 KARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATE 195
+ R +T +N +SSRSH++ +++ E + Q+ ++ L+DLAGSE +T
Sbjct: 209 RNRTVGATRLNQRSSRSHAVLLVKVDQRERL-APFRQREGKLYLIDLAGSEDNRRTGNKG 267
Query: 196 ERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
R KE IN SL LG+V+ L+ PYR+S LT LL+
Sbjct: 268 LRLKESGAINTSLFVLGKVVDALNQGLPRVPYRDSKLTRLLQ 309
>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member C1
Length = 376
Score = 99.0 bits (245), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 82/214 (38%), Positives = 112/214 (52%), Gaps = 23/214 (10%)
Query: 41 FSM-MGDNLDSSLKETTGIIPRFCHQLFDQIPSNMVAQ-----VKISYLEIYNEFVYDLL 94
F+M G D L+ G+IPR LF + + Q SY+EIYNE V DLL
Sbjct: 131 FTMEGGPGGDPQLE---GLIPRALRHLFS-VAQELSGQGWTYSFVASYVEIYNETVRDLL 186
Query: 95 SSE-RKALKV-----RESPDTG-IFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMND 147
++ RK R P + + V++ VS E+ L + RA A T N+
Sbjct: 187 ATGTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNE 246
Query: 148 KSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERV----AQTKATEERFKEGRN 203
+SSRSHS+FQ+Q++ + S Q + ++LVDLAGSER+ A ER +E +
Sbjct: 247 RSSRSHSVFQLQIS--GEHSSRGLQCGAPLSLVDLAGSERLDPGLALGPGERERLRETQA 304
Query: 204 INLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
IN SL TLG VI LS+ + PYRNS LTYLL+
Sbjct: 305 INSSLSTLGLVIMALSNKESHVPYRNSKLTYLLQ 338
>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
pdb|4GKR|B Chain B, Structure Of The C-Terminal Motor Domain Of Kar3 From
Candida Glabrata
Length = 371
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 111/226 (49%), Gaps = 24/226 (10%)
Query: 33 GTNEFVFHFSMMGDNLDSS-LKETTGIIPRFCHQLFDQIPS----NMVAQVKISYLEIYN 87
G N +F + G + L GI+P + +F I +V ++EIYN
Sbjct: 105 GYNVCIFAYGQTGSGKTYTMLNPGDGIVPATINHIFSWIDKLAARGWSYKVSCEFIEIYN 164
Query: 88 EFVYDLLSS--------ERKA---LKVRESPD-TGIFVSDLSVHGVSSFSEMQKWLSEGN 135
E + DLL S +R A ++R + ++++++ + S + K L N
Sbjct: 165 ENIVDLLRSGAPSQENNDRNADSKHEIRHDQELKTTYITNITTCVLDSRDTVDKVLKRAN 224
Query: 136 KARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQI-NLVDLAGSERVAQTKAT 194
K R+TAST N+ SSRSHSIF I L E +K I NLVDLAGSER+ +
Sbjct: 225 KLRSTASTAANEHSSRSHSIFIIHL---EGKNEGTGEKSQGILNLVDLAGSERLNSSMVV 281
Query: 195 EERFKEGRNINLSLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
ER +E ++IN SL LG VI L+ P+RNS LTYLL+
Sbjct: 282 GERLRETQSINKSLSCLGDVIHALNSPDGQKRHIPFRNSKLTYLLQ 327
>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its
Calcium Binding Regulator
Length = 386
Score = 94.4 bits (233), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 67/214 (31%), Positives = 113/214 (52%), Gaps = 13/214 (6%)
Query: 33 GTNEFVFHFSMMGDNLDSSL---KETTGIIPRFCHQLFDQIPSN---MVAQVKISYLEIY 86
G N +F + G ++ + G+ PR +LF+ + + +K +E+Y
Sbjct: 86 GYNVCIFAYGQTGSGKTFTIYGHESNPGLTPRATKELFNILKRDSKRFSFSLKAYMVELY 145
Query: 87 NEFVYDLL---SSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATAST 143
+ + DLL S+ R L++++ +FV +++ +S+ E++ L G++ R + T
Sbjct: 146 QDTLVDLLLPKSARRLKLEIKKDSKGMVFVENVTTIPISTLEELRMILERGSERRHVSGT 205
Query: 144 NMNDKSSRSHSIFQIQL-TLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGR 202
NMN++SSRSH I + + ++ T S+ K S VDLAGSERV ++ + + KE +
Sbjct: 206 NMNEESSRSHLILSVVIESIDLQTQSAARGKLS---FVDLAGSERVKKSGSAGNQLKEAQ 262
Query: 203 NINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLL 236
+IN SL LG VI LS + PYRN LT L+
Sbjct: 263 SINKSLSALGDVIGALSSGNQHIPYRNHKLTMLM 296
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 93.6 bits (231), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 108/229 (47%), Gaps = 32/229 (13%)
Query: 33 GTNEFVFHFSMMGDNLD-SSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYN 87
G N +F + G + L GIIP +F+ I +V ++EIYN
Sbjct: 139 GYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYN 198
Query: 88 EFVYDLLSSERKALKVRESPDTGIFVSDLSVHG---------------VSSFSEMQKWLS 132
E + DLL S+ DT I + H + S ++ L
Sbjct: 199 ENIVDLLRSDNN-----NKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILK 253
Query: 133 EGNKARATASTNMNDKSSRSHSIFQIQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQT 191
+ NK R+TAST N+ SSRSHSIF I L+ + TG+ +NLVDLAGSER+ +
Sbjct: 254 KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA---HSYGTLNLVDLAGSERINVS 310
Query: 192 KATEERFKEGRNINLSLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
+ +R +E +NIN SL LG VI L + P+RNS LTYLL+
Sbjct: 311 QVVGDRLRETQNINKSLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 359
>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A
Saccharomyces Cerevisiae Kinesin-Related Protein
Length = 346
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 108/229 (47%), Gaps = 32/229 (13%)
Query: 33 GTNEFVFHFSMMGDNLD-SSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYN 87
G N +F + G + L GIIP +F+ I +V ++EIYN
Sbjct: 82 GYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 141
Query: 88 EFVYDLLSSERKALKVRESPDTGIFVSDLSVHG---------------VSSFSEMQKWLS 132
E + DLL S+ DT I + H + S ++ L
Sbjct: 142 ENIVDLLRSDNN-----NKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILK 196
Query: 133 EGNKARATASTNMNDKSSRSHSIFQIQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQT 191
+ NK R+TAST N+ SSRSHSIF I L+ + TG+ +NLVDLAGSER+ +
Sbjct: 197 KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA---HSYGTLNLVDLAGSERINVS 253
Query: 192 KATEERFKEGRNINLSLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
+ +R +E +NIN SL LG VI L + P+RNS LTYLL+
Sbjct: 254 QVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 302
>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling
Pathway For Activation Of The Motor Atpase
Length = 358
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 78/229 (34%), Positives = 108/229 (47%), Gaps = 32/229 (13%)
Query: 33 GTNEFVFHFSMMGDNLD-SSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYN 87
G N +F + G + L GIIP +F+ I +V ++EIYN
Sbjct: 94 GYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 153
Query: 88 EFVYDLLSSERKALKVRESPDTGIFVSDLSVHG---------------VSSFSEMQKWLS 132
E + DLL S+ DT I + H + S ++ L
Sbjct: 154 ENIVDLLRSDNN-----NKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILK 208
Query: 133 EGNKARATASTNMNDKSSRSHSIFQIQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQT 191
+ NK R+TAST N+ SSRSHSIF I L+ + TG+ +NLVDLAGSER+ +
Sbjct: 209 KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA---HSYGTLNLVDLAGSERINVS 265
Query: 192 KATEERFKEGRNINLSLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
+ +R +E +NIN SL LG VI L + P+RNS LTYLL+
Sbjct: 266 QVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 314
>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Kin10NOD IN Complex With Divalent Manganese And Adp
Length = 344
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 19/191 (9%)
Query: 52 LKETTGIIPRFCHQLFDQIPSNM-----VAQVKISYLEIYNEFVYDLLSSERKALKVRES 106
L E GI+PR +F+++ + QV S++EIYNE +DLL S
Sbjct: 121 LPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS------TPHM 174
Query: 107 PDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDT 166
P + + S +++ L G + R TNMN SSRSH+I I +
Sbjct: 175 PMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHV------ 228
Query: 167 GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPP 226
S T S++N+VDLAGSE V +T +EG NINL L+++ +V+ +++ V P
Sbjct: 229 -KSKTHH-SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIP 286
Query: 227 YRNSTLTYLLK 237
YR+S LT +L+
Sbjct: 287 YRDSVLTTVLQ 297
>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Adp
pdb|3DCB|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member
Nod In Complex With Amppnp
pdb|3DCO|N Chain N, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
Length = 344
Score = 91.7 bits (226), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 19/191 (9%)
Query: 52 LKETTGIIPRFCHQLFDQIPSNM-----VAQVKISYLEIYNEFVYDLLSSERKALKVRES 106
L E GI+PR +F+++ + QV S++EIYNE +DLL S
Sbjct: 121 LPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLGS------TPHM 174
Query: 107 PDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDT 166
P + + S +++ L G + R TNMN SSRSH+I I +
Sbjct: 175 PMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAIVTIHV------ 228
Query: 167 GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPP 226
S T S++N+VDLAGSE V +T +EG NINL L+++ +V+ +++ V P
Sbjct: 229 -KSKTHH-SRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVVMSMAAGHTVIP 286
Query: 227 YRNSTLTYLLK 237
YR+S LT +L+
Sbjct: 287 YRDSVLTTVLQ 297
>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 107/229 (46%), Gaps = 32/229 (13%)
Query: 33 GTNEFVFHFSMMGDNLD-SSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYN 87
G N +F + G + L GIIP +F+ I +V ++EIYN
Sbjct: 83 GYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 142
Query: 88 EFVYDLLSSERKALKVRESPDTGIFVSDLSVHG---------------VSSFSEMQKWLS 132
E + DLL S+ DT I + H + S ++ L
Sbjct: 143 ENIVDLLRSDNN-----NKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILK 197
Query: 133 EGNKARATASTNMNDKSSRSHSIFQIQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQT 191
+ NK R+TAST N+ SSRSHSIF I L+ + TG+ +NLVDLAGSER+ +
Sbjct: 198 KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA---HSYGTLNLVDLAGSERINVS 254
Query: 192 KATEERFKEGRNINLSLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
+ +R +E +NI SL LG VI L + P+RNS LTYLL+
Sbjct: 255 QVVGDRLRETQNIKKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 303
>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
pdb|1F9W|B Chain B, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 90.9 bits (224), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 107/229 (46%), Gaps = 32/229 (13%)
Query: 33 GTNEFVFHFSMMGDNLD-SSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYN 87
G N +F + G + L GIIP +F+ I +V ++EIYN
Sbjct: 83 GYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 142
Query: 88 EFVYDLLSSERKALKVRESPDTGIFVSDLSVHG---------------VSSFSEMQKWLS 132
E + DLL S+ DT I + H + S ++ L
Sbjct: 143 ENIVDLLRSDNN-----NKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILK 197
Query: 133 EGNKARATASTNMNDKSSRSHSIFQIQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQT 191
+ NK R+TAST N+ SSRSHSIF I L+ + TG+ +NLVDLAGS R+ +
Sbjct: 198 KANKLRSTASTASNEHSSRSHSIFIIHLSGSNAKTGA---HSYGTLNLVDLAGSARINVS 254
Query: 192 KATEERFKEGRNINLSLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
+ +R +E +NIN SL LG VI L + P+RNS LTYLL+
Sbjct: 255 QVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 303
>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway
For Activation Of The Kinesin Motor Atpase
Length = 347
Score = 90.5 bits (223), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 77/229 (33%), Positives = 107/229 (46%), Gaps = 32/229 (13%)
Query: 33 GTNEFVFHFSMMGDNLD-SSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYN 87
G N +F + G + L GIIP +F+ I +V ++EIYN
Sbjct: 83 GYNVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYN 142
Query: 88 EFVYDLLSSERKALKVRESPDTGIFVSDLSVHG---------------VSSFSEMQKWLS 132
E + DLL S+ DT I + H + S ++ L
Sbjct: 143 ENIVDLLRSDNN-----NKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILK 197
Query: 133 EGNKARATASTNMNDKSSRSHSIFQIQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQT 191
+ NK R+TAST N+ SS SHSIF I L+ + TG+ +NLVDLAGSER+ +
Sbjct: 198 KANKLRSTASTASNEHSSASHSIFIIHLSGSNAKTGA---HSYGTLNLVDLAGSERINVS 254
Query: 192 KATEERFKEGRNINLSLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
+ +R +E +NIN SL LG VI L + P+RNS LTYLL+
Sbjct: 255 QVVGDRLRETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 303
>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding
Protein
pdb|3CNZ|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3CNZ|B Chain B, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|A Chain A, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
pdb|3COB|C Chain C, Structural Dynamics Of The Microtubule Binding And
Regulatory Elements In The Kinesin-Like Calmodulin
Binding Protein
Length = 369
Score = 90.1 bits (222), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/186 (32%), Positives = 105/186 (56%), Gaps = 8/186 (4%)
Query: 57 GIIPRFCHQLFD--QIPSNMVA-QVKISYLEIYNEFVYDLL---SSERKALKVRESPDTG 110
G+ PR +LF + SN + +K +E+Y + + DLL ++R L +++
Sbjct: 105 GLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGM 164
Query: 111 IFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSV 170
+ V +++V +S++ E++ + G++ R T T MN++SSRSH I + + T ++
Sbjct: 165 VSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAI 224
Query: 171 TQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRNS 230
+ +++ VDLAGSERV ++ + + KE ++IN SL LG VI+ LS + PYRN
Sbjct: 225 AR--GKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNH 282
Query: 231 TLTYLL 236
LT L+
Sbjct: 283 KLTMLM 288
>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus
pdb|3KIN|A Chain A, Kinesin (Dimeric) From Rattus Norvegicus
pdb|3KIN|C Chain C, Kinesin (Dimeric) From Rattus Norvegicus
Length = 238
Score = 88.6 bits (218), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/135 (40%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Query: 57 GIIPRFCHQLFDQIPS---NMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFV 113
GIIPR H +FD I S N+ +K+SY EIY + + DLL + L V E + +V
Sbjct: 106 GIIPRIAHDIFDHIYSMDENLEFHIKVSYFEIYLDKIRDLLDVSKTNLAVHEDKNRVPYV 165
Query: 114 SDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQK 173
+ VSS E+ + EG R A TNMN+ SSRSHSIF I + ++ + +
Sbjct: 166 KGCTERFVSSPEEVMDVIDEGKANRHVAVTNMNEHSSRSHSIFLI--NIKQENVETEKKL 223
Query: 174 CSQINLVDLAGSERV 188
++ LVDLAGSE+V
Sbjct: 224 SGKLYLVDLAGSEKV 238
>pdb|2HEH|A Chain A, Crystal Structure Of The Kif2c Motor Domain (Casp Target)
Length = 387
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/162 (35%), Positives = 89/162 (54%), Gaps = 9/162 (5%)
Query: 77 QVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNK 136
+V +++ EIYN ++DLL+ + K L+V E + V L H V+S ++ K + G+
Sbjct: 190 EVYVTFFEIYNGKLFDLLNKKAK-LRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSA 248
Query: 137 ARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEE 196
R + T N SSRSH+ FQI L + + + +LVDLAG+ER A T + +
Sbjct: 249 CRTSGQTFANSNSSRSHACFQIIL-------RAKGRMHGKFSLVDLAGNERGADTSSADR 301
Query: 197 RFK-EGRNINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
+ + EG IN SL+ L + I L + A P+R S LT +L+
Sbjct: 302 QTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLR 343
>pdb|3EDL|D Chain D, Kinesin13-Microtubule Ring Complex
Length = 331
Score = 83.6 bits (205), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 9/166 (5%)
Query: 73 NMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLS 132
N+ +V +++ EIYN V+DLL+ + K L+V E + V L + V+ ++ K ++
Sbjct: 134 NLNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSRQQVQVVGLQEYLVTCADDVIKMIN 192
Query: 133 EGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTK 192
G+ R + T N SSRSH+ FQI L T + K +LVDLAG+ER A T
Sbjct: 193 MGSACRTSGQTFANSNSSRSHACFQILLR----TKGRLHGK---FSLVDLAGNERGADTS 245
Query: 193 ATEERFK-EGRNINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
+ + + + EG IN SL+ L + I L + A P+R S LT +L+
Sbjct: 246 SADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLR 291
>pdb|1V8J|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With Mg-adp
pdb|1V8K|A Chain A, The Crystal Structure Of The Minimal Functional Domain Of
The Microtubule Destabilizer Kif2c Complexed With
Mg-Amppnp
Length = 410
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 9/166 (5%)
Query: 73 NMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLS 132
N+ +V +++ EIYN V+DLL+ + K L+V E + V L + V+ ++ K ++
Sbjct: 206 NLNLEVYVTFFEIYNGKVFDLLNKKAK-LRVLEDSRQQVQVVGLQEYLVTCADDVIKMIN 264
Query: 133 EGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTK 192
G+ R + T N SSRSH+ FQI L T + K +LVDLAG+ER A T
Sbjct: 265 MGSACRTSGQTFANSNSSRSHACFQILLR----TKGRLHGK---FSLVDLAGNERGADTS 317
Query: 193 ATEERFK-EGRNINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
+ + + + EG IN SL+ L + I L + A P+R S LT +L+
Sbjct: 318 SADRQTRMEGAEINKSLLALKECIRALGQNKAHTPFRESKLTQVLR 363
>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In
Complex With Adp
Length = 420
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 84/162 (51%), Gaps = 9/162 (5%)
Query: 77 QVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNK 136
QV ++ EIY+ V+DLL+ + K L+V E + V L V ++ K + GN
Sbjct: 228 QVYATFFEIYSGKVFDLLNRKTK-LRVLEDGKQQVQVVGLQEREVKCVEDVLKLIDIGNS 286
Query: 137 ARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEE 196
R + T+ N SSRSH++FQI L + +L+DLAG+ER A T + +
Sbjct: 287 CRTSGQTSANAHSSRSHAVFQIILRRKGKLH-------GKFSLIDLAGNERGADTSSADR 339
Query: 197 RFK-EGRNINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
+ + EG IN SL+ L + I L + P+R S LT +L+
Sbjct: 340 QTRLEGAEINKSLLALKECIRALGRNKPHTPFRASKLTQVLR 381
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 1 MLATINPLQSHIEESLATLRYA 22
M+ATI+P + E +L TLRYA
Sbjct: 393 MIATISPGMASCENTLNTLRYA 414
>pdb|1RY6|A Chain A, Crystal Structure Of Internal Kinesin Motor Domain
Length = 360
Score = 74.3 bits (181), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 85/159 (53%), Gaps = 7/159 (4%)
Query: 80 ISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARA 139
IS+ EIY +YDLL +RK + E+ + V DL + V + E+ + +G R
Sbjct: 141 ISFYEIYCGKLYDLLQ-KRKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRK 199
Query: 140 TASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFK 199
+ ND+SSRSH+I I L +D + + +I +DLAGSER A T + ++ +
Sbjct: 200 IGVNSQNDESSRSHAILNIDL---KDINKNTS--LGKIAFIDLAGSERGADTVSQNKQTQ 254
Query: 200 -EGRNINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
+G NIN SL+ L + I + P+R+S LT +L+
Sbjct: 255 TDGANINRSLLALKECIRAMDSDKNHIPFRDSELTKVLR 293
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1 MLATINPLQSHIEESLATLRYALQARN 27
M+A I+P S E++L TLRY+ + +N
Sbjct: 304 MIANISPTISCCEQTLNTLRYSSRVKN 330
>pdb|1GD6|A Chain A, Structure Of The Bombyx Mori Lysozyme
Length = 119
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 112 FVSDLSVHGVSSFSE--MQKW--LSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTG 167
V +L HG F E M+ W L E +R T+ TN N S+ + +FQI G
Sbjct: 8 LVHELRKHG---FEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKG 64
Query: 168 SSVTQ----KCSQINLVDLAGSERVAQTKATEERF 198
+S + KCS + D+ + + A+ RF
Sbjct: 65 ASPGKDCNVKCSDLLTDDITKAAKCAKKIYKRHRF 99
>pdb|2RSC|A Chain A, Solution Structure Of The Bombyx Mori Lysozyme
Length = 120
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 11/95 (11%)
Query: 112 FVSDLSVHGVSSFSE--MQKW--LSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTG 167
V +L HG F E M+ W L E +R T+ TN N S+ + +FQI G
Sbjct: 9 LVHELRKHG---FEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKG 65
Query: 168 SSVTQ----KCSQINLVDLAGSERVAQTKATEERF 198
+S + KCS + D+ + + A+ RF
Sbjct: 66 ASPGKDCNVKCSDLLTDDITKAAKCAKKIYKRHRF 100
>pdb|2GAH|B Chain B, Heterotetrameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 119 HGVSSFSEMQK-WLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTE 164
HG+++ + ++K WL+ GN AR T N S I++ L L E
Sbjct: 44 HGITNVAVLEKGWLAGGNXARNTTIIRSNYLWDESAGIYEKSLKLWE 90
>pdb|2GAG|B Chain B, Heteroteterameric Sarcosine: Structure Of A Diflavin
Metaloenzyme At 1.85 A Resolution
Length = 405
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 119 HGVSSFSEMQK-WLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTE 164
HG+++ + ++K WL+ GN AR T N S I++ L L E
Sbjct: 44 HGITNVAVLEKGWLAGGNMARNTTIIRSNYLWDESAGIYEKSLKLWE 90
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 162 LTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEE 196
L + TG+S+ +I+ DL +ERV Q K E+
Sbjct: 109 LAKATGASIVSTIDEISSSDLGTAERVEQVKVGED 143
>pdb|1I8I|A Chain A, Crystal Structure Of Dsfv Mr1 In Complex With The Peptide
Antigen Of The Mutant Epidermal Growth Factor Receptor,
Egfrviii, At Room Temperature
pdb|1I8K|A Chain A, Crystal Structure Of Dsfv Mr1 In Complex With The Peptide
Antigen Of The Mutant Epidermal Growth Factor Receptor,
Egfrviii, At Liquid Nitrogen Temperature
Length = 107
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 131 LSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTG 167
+SEGN R + + + + +F I+ TL+ED G
Sbjct: 48 ISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDVG 84
>pdb|1BB6|A Chain A, Lysozyme Complex With 4-Methyl-Umbelliferyl Chitotriose
pdb|1BB7|A Chain A, Lysozyme Complex With 4-Methyl-Umbelliferyl Chitobiose
pdb|1LMC|A Chain A, The Crystal Structure Of A Complex Between Bulgecin, A
Bacterial Metabolite, And Lysozyme From The Rainbow
Trout
pdb|1LMN|A Chain A, The Refined Crystal Structure Of Lysozyme From The Rainbow
Trout (Oncorhynchus Mykiss)
pdb|1LMO|A Chain A, The Crystal Structures Of Three Complexes Between
Chitooligosaccharides And Lysozyme From The Rainbow
Trout
pdb|1LMP|A Chain A, The Crystal Structures Of Three Complexes Between
Chitooligosaccharides And Lysozyme From The Rainbow
Trout
pdb|1LMQ|A Chain A, The Crystal Structures Of Three Complexes Between
Chitooligosaccharides And Lysozyme From The Rainbow
Trout
Length = 129
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 10/70 (14%)
Query: 127 MQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQK------CSQINLV 180
+ KW S N T +TN N S + IFQI D G + K CSQ+
Sbjct: 31 LSKWESSYN----TQATNRNTDGSTDYGIFQINSRYWCDDGRTPGAKNVCGIRCSQLLTD 86
Query: 181 DLAGSERVAQ 190
DL + R A+
Sbjct: 87 DLTVAIRCAK 96
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 27.3 bits (59), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 162 LTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEE 196
L + TG+S+ +I+ DL +ERV Q K E+
Sbjct: 322 LAKATGASIVSTIDEISSSDLGTAERVEQVKVGED 356
>pdb|2JRX|A Chain A, Solution Nmr Structure Of Protein Yejl From E. Coli.
Northeast Structural Genomics Target Er309
pdb|2JRX|B Chain B, Solution Nmr Structure Of Protein Yejl From E. Coli.
Northeast Structural Genomics Target Er309
Length = 83
Score = 27.3 bits (59), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 205 NLSLMTLGQVITNLSDHSAVPPYRNS 230
+LSLM LG ++TNL + S P R +
Sbjct: 31 DLSLMVLGNMVTNLINTSIAPAQRQA 56
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.352
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,025,959
Number of Sequences: 62578
Number of extensions: 214420
Number of successful extensions: 768
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 111
length of query: 237
length of database: 14,973,337
effective HSP length: 96
effective length of query: 141
effective length of database: 8,965,849
effective search space: 1264184709
effective search space used: 1264184709
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)