Query psy17371
Match_columns 237
No_of_seqs 126 out of 1437
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 20:42:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17371.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17371hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4280|consensus 100.0 2.6E-61 5.6E-66 429.3 13.2 232 6-237 53-298 (574)
2 cd01373 KISc_KLP2_like Kinesin 100.0 2.6E-57 5.6E-62 392.2 21.2 231 7-237 43-299 (337)
3 cd01370 KISc_KIP3_like Kinesin 100.0 2.7E-57 5.8E-62 392.2 21.1 226 6-237 55-300 (338)
4 KOG0240|consensus 100.0 4.6E-57 1E-61 393.8 16.0 230 6-237 50-293 (607)
5 KOG0242|consensus 100.0 1.6E-57 3.5E-62 418.4 13.6 231 4-237 52-293 (675)
6 cd01368 KISc_KIF23_like Kinesi 100.0 3.3E-56 7.1E-61 386.2 20.8 223 6-237 56-309 (345)
7 KOG0243|consensus 100.0 2.3E-57 5E-62 420.5 13.5 231 7-237 97-352 (1041)
8 cd01375 KISc_KIF9_like Kinesin 100.0 5.9E-55 1.3E-59 377.2 22.3 227 7-237 50-298 (334)
9 cd01367 KISc_KIF2_like Kinesin 100.0 8.1E-55 1.8E-59 374.6 20.5 220 6-237 52-286 (322)
10 PLN03188 kinesin-12 family pro 100.0 4.9E-55 1.1E-59 409.2 20.3 232 6-237 133-396 (1320)
11 cd01371 KISc_KIF3 Kinesin moto 100.0 3.2E-54 7E-59 372.6 22.4 229 6-237 49-295 (333)
12 cd01376 KISc_KID_like Kinesin 100.0 2.5E-54 5.4E-59 371.3 21.1 222 6-237 48-283 (319)
13 cd01365 KISc_KIF1A_KIF1B Kines 100.0 4.7E-54 1E-58 374.7 21.9 225 7-237 50-311 (356)
14 KOG0245|consensus 100.0 1.1E-55 2.5E-60 404.0 11.9 218 20-237 71-310 (1221)
15 cd01369 KISc_KHC_KIF5 Kinesin 100.0 1.1E-53 2.3E-58 368.6 22.5 227 6-237 44-287 (325)
16 cd01374 KISc_CENP_E Kinesin mo 100.0 6.2E-54 1.3E-58 369.4 20.0 225 6-237 41-283 (321)
17 cd01372 KISc_KIF4 Kinesin moto 100.0 2.8E-53 6E-58 368.4 22.5 232 6-237 41-302 (341)
18 cd01364 KISc_BimC_Eg5 Kinesin 100.0 2.5E-53 5.4E-58 369.9 22.1 232 6-237 49-305 (352)
19 cd01366 KISc_C_terminal Kinesi 100.0 1E-51 2.2E-56 356.9 21.5 222 7-237 47-288 (329)
20 KOG0239|consensus 100.0 4E-53 8.8E-58 388.1 12.8 224 6-237 371-602 (670)
21 cd00106 KISc Kinesin motor dom 100.0 7.6E-51 1.6E-55 351.6 22.3 226 6-237 46-292 (328)
22 smart00129 KISc Kinesin motor, 100.0 7.9E-51 1.7E-55 352.3 22.1 226 6-237 47-290 (335)
23 PF00225 Kinesin: Kinesin moto 100.0 6.8E-52 1.5E-56 359.0 15.2 225 7-237 43-297 (335)
24 KOG0247|consensus 100.0 1.1E-51 2.5E-56 368.4 12.3 226 6-237 82-398 (809)
25 KOG0246|consensus 100.0 1.3E-48 2.8E-53 340.5 17.6 225 7-237 260-502 (676)
26 KOG0241|consensus 100.0 1.2E-49 2.6E-54 360.9 10.1 224 8-237 73-313 (1714)
27 COG5059 KIP1 Kinesin-like prot 100.0 6.8E-43 1.5E-47 318.7 14.6 231 5-237 56-298 (568)
28 KOG0244|consensus 100.0 1.3E-43 2.7E-48 324.8 -2.0 229 5-237 32-279 (913)
29 cd01363 Motor_domain Myosin an 100.0 2.4E-38 5.3E-43 252.5 15.0 158 12-237 8-169 (186)
30 KOG4280|consensus 97.3 8.4E-05 1.8E-09 68.0 1.3 43 5-47 62-107 (574)
31 KOG0242|consensus 97.1 0.0002 4.3E-09 67.5 1.2 44 5-48 63-109 (675)
32 KOG0240|consensus 96.4 0.0014 3E-08 59.3 1.6 49 4-52 58-109 (607)
33 KOG0245|consensus 96.3 0.0013 2.9E-08 63.1 0.9 43 5-47 64-109 (1221)
34 KOG0239|consensus 95.5 0.011 2.3E-07 55.9 3.0 48 7-55 362-413 (670)
35 KOG0241|consensus 94.1 0.027 5.9E-07 54.2 2.0 50 20-70 77-128 (1714)
36 COG5059 KIP1 Kinesin-like prot 91.1 0.053 1.1E-06 50.6 -0.5 81 133-219 486-566 (568)
37 KOG0244|consensus 88.2 0.29 6.3E-06 47.3 1.9 8 153-160 287-294 (913)
38 COG0556 UvrB Helicase subunit 76.4 0.94 2E-05 41.6 0.4 57 33-90 39-100 (663)
39 KOG0243|consensus 71.0 2.1 4.6E-05 42.3 1.3 19 36-54 130-148 (1041)
40 KOG0246|consensus 62.0 3.3 7.1E-05 38.3 0.6 16 37-52 294-309 (676)
41 PF06309 Torsin: Torsin; Inte 59.0 1.5 3.3E-05 32.5 -1.6 10 33-42 60-69 (127)
42 cd01373 KISc_KLP2_like Kinesin 57.7 5.5 0.00012 34.6 1.3 43 12-54 42-94 (337)
43 cd01363 Motor_domain Myosin an 56.1 6.7 0.00015 30.9 1.5 35 20-55 8-44 (186)
44 cd01367 KISc_KIF2_like Kinesin 54.0 6.7 0.00015 33.9 1.2 21 36-56 86-106 (322)
45 cd01368 KISc_KIF23_like Kinesi 52.4 6.6 0.00014 34.3 0.9 44 12-55 56-109 (345)
46 PRK05642 DNA replication initi 50.0 4.6 0.0001 33.1 -0.4 12 5-16 14-25 (234)
47 cd01370 KISc_KIP3_like Kinesin 48.9 7.1 0.00015 34.0 0.6 45 12-56 55-109 (338)
48 PRK06893 DNA replication initi 47.8 8.9 0.00019 31.3 1.0 15 3-17 9-23 (229)
49 PLN03188 kinesin-12 family pro 47.3 8.4 0.00018 39.1 0.9 12 6-17 143-154 (1320)
50 cd01365 KISc_KIF1A_KIF1B Kines 45.3 11 0.00025 32.9 1.3 20 36-55 90-109 (356)
51 KOG1882|consensus 45.1 42 0.00092 27.8 4.4 40 147-187 212-251 (293)
52 cd01375 KISc_KIF9_like Kinesin 44.5 9.8 0.00021 33.0 0.8 42 12-54 49-100 (334)
53 cd01364 KISc_BimC_Eg5 Kinesin 44.4 12 0.00025 32.8 1.2 45 10-54 47-101 (352)
54 PRK08084 DNA replication initi 42.6 11 0.00025 30.8 0.9 41 3-44 15-63 (235)
55 cd01376 KISc_KID_like Kinesin 42.2 13 0.00029 32.0 1.2 35 22-56 58-102 (319)
56 PF03670 UPF0184: Uncharacteri 40.6 34 0.00073 23.4 2.7 30 196-225 23-52 (83)
57 cd01369 KISc_KHC_KIF5 Kinesin 39.9 14 0.00031 31.8 1.1 19 37-55 79-97 (325)
58 PF01935 DUF87: Domain of unkn 38.1 6 0.00013 32.0 -1.5 11 33-43 30-40 (229)
59 cd01371 KISc_KIF3 Kinesin moto 37.7 15 0.00034 31.8 1.0 44 12-55 49-102 (333)
60 PRK09087 hypothetical protein; 37.4 8.9 0.00019 31.3 -0.6 19 201-219 182-200 (226)
61 PRK08727 hypothetical protein; 37.0 15 0.00032 30.1 0.7 11 33-43 48-58 (233)
62 cd04897 ACT_ACR_3 ACT domain-c 36.4 1.3E+02 0.0028 20.0 5.0 36 54-94 10-45 (75)
63 cd01374 KISc_CENP_E Kinesin mo 35.8 19 0.00041 31.0 1.2 17 37-53 76-92 (321)
64 cd01372 KISc_KIF4 Kinesin moto 35.1 17 0.00036 31.6 0.7 16 37-52 76-91 (341)
65 PRK08116 hypothetical protein; 34.4 17 0.00037 30.6 0.6 9 6-14 81-89 (268)
66 KOG0953|consensus 34.3 13 0.00027 34.7 -0.2 46 28-73 193-238 (700)
67 PRK12377 putative replication 32.8 19 0.00042 29.9 0.7 13 33-45 108-120 (248)
68 PF14695 LINES_C: Lines C-term 29.9 97 0.0021 17.9 3.1 30 207-237 5-34 (39)
69 PF13245 AAA_19: Part of AAA d 28.1 9.8 0.00021 25.3 -1.5 11 33-43 17-27 (76)
70 COG1222 RPT1 ATP-dependent 26S 27.4 23 0.00049 31.3 0.3 23 57-79 227-249 (406)
71 PF00308 Bac_DnaA: Bacterial d 27.3 21 0.00046 28.9 0.1 45 6-50 4-49 (219)
72 cd01366 KISc_C_terminal Kinesi 27.3 31 0.00067 29.8 1.1 21 35-55 78-98 (329)
73 COG4525 TauB ABC-type taurine 25.8 19 0.0004 29.3 -0.5 9 33-41 38-46 (259)
74 PF05970 PIF1: PIF1-like helic 25.2 15 0.00032 32.3 -1.3 37 5-42 2-38 (364)
75 PF13304 AAA_21: AAA domain; P 24.2 25 0.00055 27.8 0.0 12 32-43 5-16 (303)
76 PRK06620 hypothetical protein; 24.2 17 0.00036 29.4 -1.1 13 32-44 50-62 (214)
77 KOG0247|consensus 23.7 44 0.00095 32.2 1.4 22 39-60 119-140 (809)
78 smart00053 DYNc Dynamin, GTPas 23.7 4.2E+02 0.0091 21.9 7.9 53 121-188 86-138 (240)
79 cd00046 DEXDc DEAD-like helica 23.3 18 0.00038 25.6 -1.0 15 33-47 7-21 (144)
80 PF13555 AAA_29: P-loop contai 22.0 21 0.00045 22.9 -0.7 8 33-40 30-37 (62)
81 PF04851 ResIII: Type III rest 21.9 11 0.00024 28.7 -2.5 13 33-45 32-44 (184)
82 PRK14086 dnaA chromosomal repl 21.5 42 0.00092 31.8 0.9 13 5-17 283-295 (617)
No 1
>KOG4280|consensus
Probab=100.00 E-value=2.6e-61 Score=429.35 Aligned_cols=232 Identities=41% Similarity=0.593 Sum_probs=207.4
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc--CcceeeeEeeeecCCCCCCC----CCCccccchhHHHhhccCCCC---c
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI--GTNEFVFHFSMMGDNLDSSL----KETTGIIPRFCHQLFDQIPSN---M 74 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~--G~~~sgktyt~~G~~~~~~~----~~~~Gii~r~~~~Lf~~~~~~---~ 74 (237)
.-+||+||...+.+ +|..+++|+|+++ |+|||+++||++|+||+++| .+..|||||++++||..|++. .
T Consensus 53 ~ftfD~vf~~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~~~~~GiiPraf~~LF~~I~~~~~~~ 132 (574)
T KOG4280|consen 53 SFTFDAVFDSDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPDPELRGLIPRAFEHLFRHIDERKEKT 132 (574)
T ss_pred CceeeeeecCCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCChhhCCchhHHHHHHHHHHHhccccc
Confidence 36899999977766 9999999988887 55555555555555444444 367899999999999999765 4
Q ss_pred eEEEEEEEEEEecccccccccccc-ccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCCCce
Q psy17371 75 VAQVKISYLEIYNEFVYDLLSSER-KALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSH 153 (237)
Q Consensus 75 ~~~v~vS~~EIy~e~v~DLL~~~~-~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssrsH 153 (237)
.|.|++||+|||||+|+|||++.. +.+.++++++.|++|+|++++.|.+++++..++..|.++|.++++.+|..|||||
T Consensus 133 ~f~vrvS~lEiYnE~i~DLL~~~~~~~l~lre~p~~Gv~V~nlse~~v~s~~d~~~~l~~G~~nR~vgat~mn~~SsRSH 212 (574)
T KOG4280|consen 133 RFLVRVSYLEIYNESIRDLLSPVNPKGLELREDPKCGVYVENLSEMDVESAEDAQQLLVVGLANRRVGATSMNEESSRSH 212 (574)
T ss_pred eEEEEeehHHHHhHHHHHHhCccCcCCceeeEcCCCceEecCcceeecCCHHHHHHHHHHHHhhcchhhccCCcccccce
Confidence 699999999999999999999985 6999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEEe-cCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCCC-CCCCCCch
Q psy17371 154 SIFQIQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSA-VPPYRNST 231 (237)
Q Consensus 154 ~v~~i~v~~~~-~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~-~vpyrdSk 231 (237)
+||+++|++.. ..++......|+|+||||||+||..++++.|.+++|+.+||+||++||+||.+|+++++ ||||||||
T Consensus 213 ~ift~~i~~~~~~~~~~~~~~~~rlnlvDLagsEr~~~tga~G~rlkEa~~IN~SLs~LG~vI~aLvd~~~~HIPYRdSk 292 (574)
T KOG4280|consen 213 AIFTIHIESSEKSDGGLMSGRSSKLNLVDLAGSERQSKTGAEGERLKEATNINLSLSALGNVISALVDGSKTHIPYRDSK 292 (574)
T ss_pred EEEEEEEEeecccCCCccccccceeeeeeccchhhhcccCccchhhhhhcccchhHHHHHHHHHHHhccccCCCCcchhH
Confidence 99999999943 44455558899999999999999999999999999999999999999999999999998 99999999
Q ss_pred hhhhcC
Q psy17371 232 LTYLLK 237 (237)
Q Consensus 232 LT~lLq 237 (237)
||+|||
T Consensus 293 LT~LLq 298 (574)
T KOG4280|consen 293 LTRLLQ 298 (574)
T ss_pred HHHHHH
Confidence 999997
No 2
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=100.00 E-value=2.6e-57 Score=392.16 Aligned_cols=231 Identities=38% Similarity=0.540 Sum_probs=203.0
Q ss_pred cccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCC--CCCCCccccchhHHHhhccCC
Q psy17371 7 PLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDS--SLKETTGIIPRFCHQLFDQIP 71 (237)
Q Consensus 7 ~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~--~~~~~~Gii~r~~~~Lf~~~~ 71 (237)
..||++|.....+ +|+..++|+++++ |++||||||||+|+.... ...+++||+||++++||+.++
T Consensus 43 f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~~~~~~~~~~~Giipr~~~~Lf~~i~ 122 (337)
T cd01373 43 FTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQ 122 (337)
T ss_pred EeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCCccccccccCCCHHHHHHHHHHHHHH
Confidence 3578888655444 8888888866544 889999999999876432 123578999999999998875
Q ss_pred C-------CceEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCC
Q psy17371 72 S-------NMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTN 144 (237)
Q Consensus 72 ~-------~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~ 144 (237)
. ...|.|++||+|||+|+|+|||++....+.+++++.++++++|++++.|.|++|++++|..|.++|...++.
T Consensus 123 ~~~~~~~~~~~~~v~~S~~EIyne~v~DLL~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~ll~~g~~~R~~~~t~ 202 (337)
T cd01373 123 REEEKRGDGLKFLCKCSFLEIYNEQITDLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATS 202 (337)
T ss_pred hhhhhcccCceEEEEEEEEeecCCEeeeCCCCCCCCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccCcccCc
Confidence 3 257899999999999999999999888899999999999999999999999999999999999999999999
Q ss_pred CCCCCCCceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhc----
Q psy17371 145 MNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSD---- 220 (237)
Q Consensus 145 ~n~~ssrsH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~---- 220 (237)
+|..|||||+||+++|.+............|+|+||||||+||....+..+.+++|+..||+||++|++||.+|++
T Consensus 203 ~n~~SSRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLAGSEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~aL~~~~~~ 282 (337)
T cd01373 203 MNSESSRSHAVFTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTLGHVIMALVDVAHG 282 (337)
T ss_pred CCCCCCCccEEEEEEEEEeecCCCCCcEEEEEEEEEECCCCCcccccCCccHhhhhhccccHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999987754444446789999999999999999999999999999999999999999999985
Q ss_pred CCCCCCCCCchhhhhcC
Q psy17371 221 HSAVPPYRNSTLTYLLK 237 (237)
Q Consensus 221 ~~~~vpyrdSkLT~lLq 237 (237)
+++||||||||||+|||
T Consensus 283 ~~~~ipyR~SkLT~lL~ 299 (337)
T cd01373 283 KQRHVPYRDSKLTFLLR 299 (337)
T ss_pred CCCccCCcccHHHHHHH
Confidence 34799999999999996
No 3
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=100.00 E-value=2.7e-57 Score=392.20 Aligned_cols=226 Identities=35% Similarity=0.534 Sum_probs=205.0
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCC
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS 72 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~ 72 (237)
...||++|.....+ +|+..++|+++++ |++||||||||+|+. +++|||||++++||+.+++
T Consensus 55 ~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~------~~~Giipr~~~~LF~~i~~ 128 (338)
T cd01370 55 KYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTD------SDPGLMVLTMKDLFDKIEE 128 (338)
T ss_pred EEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCC------CCCchHHHHHHHHHHhhhh
Confidence 45678888665544 8998888877654 888888888888887 8899999999999998865
Q ss_pred C---ceEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCC
Q psy17371 73 N---MVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKS 149 (237)
Q Consensus 73 ~---~~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~s 149 (237)
. +.+.|++||+|||+|+|+|||++..+.+.+++++.+++++.|++++.|.|++|++++|+.|.++|+..++.+|..|
T Consensus 129 ~~~~~~~~v~vS~~EIyne~v~DLL~~~~~~l~i~ed~~~~~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~S 208 (338)
T cd01370 129 RKDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQGIVVAGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATS 208 (338)
T ss_pred cccCceEEEEEEEEEEECCEEEECCCCCCCCceEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccccccCcc
Confidence 4 7899999999999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEEEEEecC-CCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCC---CCC
Q psy17371 150 SRSHSIFQIQLTLTEDT-GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHS---AVP 225 (237)
Q Consensus 150 srsH~v~~i~v~~~~~~-~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~---~~v 225 (237)
||||+||+|++.+.+.. ........|+|+||||||+||..+....+.+++|+..||+||.+|++||.+|+.++ .||
T Consensus 209 SRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~~L~~vi~~L~~~~~~~~~i 288 (338)
T cd01370 209 SRSHAVLQITVRQKDRTASINQQVRIGKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHI 288 (338)
T ss_pred CcceEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCccccccCCCCccccccchhhHHHHHHHHHHHHHHhccCCCCcC
Confidence 99999999999998743 22333678999999999999999999999999999999999999999999999988 799
Q ss_pred CCCCchhhhhcC
Q psy17371 226 PYRNSTLTYLLK 237 (237)
Q Consensus 226 pyrdSkLT~lLq 237 (237)
||||||||+|||
T Consensus 289 pyR~SkLT~lL~ 300 (338)
T cd01370 289 PYRDSKLTRLLK 300 (338)
T ss_pred CCcCCHHHHHHH
Confidence 999999999996
No 4
>KOG0240|consensus
Probab=100.00 E-value=4.6e-57 Score=393.80 Aligned_cols=230 Identities=37% Similarity=0.532 Sum_probs=210.0
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc--CcceeeeEeeeecCCCCCCC------CCCccccchhHHHhhccCCCC--
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI--GTNEFVFHFSMMGDNLDSSL------KETTGIIPRFCHQLFDQIPSN-- 73 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~--G~~~sgktyt~~G~~~~~~~------~~~~Gii~r~~~~Lf~~~~~~-- 73 (237)
...||.||...+.+ ||+..+++|++.+ |+|||+++||+.|+||+|++ .+..||+||++++||..|.+.
T Consensus 50 ~y~FDrVF~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~~GIipRi~~diF~~Iys~~~ 129 (607)
T KOG0240|consen 50 TYVFDRVFSPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEEMGIIPRILNDIFDHIYSMEE 129 (607)
T ss_pred cceeeeecCCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhhcCcHHHHHHHHHHHHhcCcc
Confidence 45689999877766 9999999999988 77777777777777777766 135699999999999988544
Q ss_pred -ceEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCCCc
Q psy17371 74 -MVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRS 152 (237)
Q Consensus 74 -~~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssrs 152 (237)
..|.|+|||+|||+|+++|||++.+.++.+++|....++++|+++..|.+++++++.++.|..+|....+.+|.+||||
T Consensus 130 n~efhVkVsy~EIYmEKi~DLL~~~k~nlsvheDK~~v~~vkG~t~~~v~s~d~v~~~i~~g~~nr~va~t~mn~~sSRS 209 (607)
T KOG0240|consen 130 NLEFHVKVSYFEIYMEKIRDLLDPEKTNLSVHEDKNRVPYVKGVTERFVSSPDEVLDVIDEGKSNRHVAVTNMNEHSSRS 209 (607)
T ss_pred cceEEEEEEeehhhhhHHHHHhCcccCCceeecccCCCceecCceeEEecCHHHHHHHHhcccccchhhhcccccccccc
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCC-CCCCCCCch
Q psy17371 153 HSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHS-AVPPYRNST 231 (237)
Q Consensus 153 H~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~-~~vpyrdSk 231 (237)
|.||+|+|.+.+..... ...|+|++|||||+|+..++++.|.-+.|.+.||+||+||++||+||+++. .||||||||
T Consensus 210 HsIF~i~VkQ~n~e~~~--~~~gkLyLVDLaGSEkvsKtga~g~vleEaK~INkSLsaLgnvI~aLa~g~~shipYRDSK 287 (607)
T KOG0240|consen 210 HSIFLIHVKQENVEDKR--KLSGKLYLVDLAGSEKVSKTGAEGAVLEEAKNINKSLSALGNVINALAEGPKSHIPYRDSK 287 (607)
T ss_pred ceEEEEEEEeccccchh--hccccEEEEEcccccccCCCCccchhHHHHhhhhhhHHHHHHHHHHHhcCCCCCCcchhhH
Confidence 99999999998844333 578999999999999999999999999999999999999999999999994 699999999
Q ss_pred hhhhcC
Q psy17371 232 LTYLLK 237 (237)
Q Consensus 232 LT~lLq 237 (237)
|||+||
T Consensus 288 LTRILq 293 (607)
T KOG0240|consen 288 LTRILQ 293 (607)
T ss_pred HHHHHH
Confidence 999996
No 5
>KOG0242|consensus
Probab=100.00 E-value=1.6e-57 Score=418.44 Aligned_cols=231 Identities=37% Similarity=0.557 Sum_probs=209.7
Q ss_pred ccCcccchhhhhhh--hHHHHHHhhhhhhhc--CcceeeeEeeeecCCCCCCC---CCCccccchhHHHhhccCCCC--c
Q psy17371 4 TINPLQSHIEESLA--TLRYALQARNIFEKI--GTNEFVFHFSMMGDNLDSSL---KETTGIIPRFCHQLFDQIPSN--M 74 (237)
Q Consensus 4 ~~~~~~~~~~~~~~--~~~y~~~~~~i~~~~--G~~~sgktyt~~G~~~~~~~---~~~~Gii~r~~~~Lf~~~~~~--~ 74 (237)
+...+||+||.... ..||+.+++|+++++ |+|||+++||++|+||++++ ..+|||+|+++.+||+.+... +
T Consensus 52 ~~~y~FD~VF~~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGii~la~~dif~~I~~~~~r 131 (675)
T KOG0242|consen 52 PEKYEFDRVFGEESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGIIPLAMKDIFEKIDKSGER 131 (675)
T ss_pred ccceeeeeecCCCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCCCeeehHHHHHHHHHHhcCCc
Confidence 46788999995555 449999999998888 67777666666666666666 477999999999999999775 5
Q ss_pred eEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCCCceE
Q psy17371 75 VAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHS 154 (237)
Q Consensus 75 ~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssrsH~ 154 (237)
.|.|.+||+|||||.|+|||++....+.+++|+.+++.|.||++..|.|++++..+|..|+++|+++.|.+|..|||||+
T Consensus 132 ~f~v~vSYlEIYNE~I~DLL~~~~~~L~irED~~~gi~V~gL~e~~v~s~e~~~~ll~~g~~~R~~g~T~~N~~SSRSHa 211 (675)
T KOG0242|consen 132 EFSVRVSYLEIYNERIRDLLNPDGGDLRLREDSEGGIVVPGLTEETVSSREELLELLQKGNKNRTTGETNLNEQSSRSHA 211 (675)
T ss_pred eeEEEEEEEEEeccccccccCCCCCCceEeEcCCCCEEecCCeeecCCCHHHHHHHHHHhhccCcccccccccccchhhh
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCC--CCCCCCCchh
Q psy17371 155 IFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHS--AVPPYRNSTL 232 (237)
Q Consensus 155 v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~--~~vpyrdSkL 232 (237)
||+|.+.+....... ..++|+||||||+||...+++.|.+++||.+||+||.+|++||.+|+++. +|||||||||
T Consensus 212 Il~i~i~s~~~~~~~---~~s~L~lIDLAGSERas~T~~~G~RlkEG~~INrSLlaLgtVI~~Ls~~~~~~hipYRDSKL 288 (675)
T KOG0242|consen 212 ILRITVESRGREASS---RVSKLNLIDLAGSERASRTGNEGVRLKEGAHINRSLLALGTVINKLSEGKRPRHIPYRDSKL 288 (675)
T ss_pred eeeEEEEeccccccc---hhheehhhhhhhhhhhhhhhccceeccccchhhHHHHHHHHHHHHHccccccCCCCccccHH
Confidence 999999998744332 67899999999999999999999999999999999999999999999984 5999999999
Q ss_pred hhhcC
Q psy17371 233 TYLLK 237 (237)
Q Consensus 233 T~lLq 237 (237)
|||||
T Consensus 289 TRiLq 293 (675)
T KOG0242|consen 289 TRLLQ 293 (675)
T ss_pred HHhch
Confidence 99997
No 6
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=100.00 E-value=3.3e-56 Score=386.24 Aligned_cols=223 Identities=37% Similarity=0.542 Sum_probs=199.4
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCC
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS 72 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~ 72 (237)
...||++|.....+ +|+..++|+++.+ |++||||||||+|+. +++|||||++++||+.+.+
T Consensus 56 ~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~------~~~Gli~r~~~~lF~~~~~ 129 (345)
T cd01368 56 KFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSP------GDGGILPRSLDVIFNSIGG 129 (345)
T ss_pred EeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCC------CCCchHHHHHHHHHHHHHh
Confidence 35678888655544 9998888876544 899999999999988 8899999999999999876
Q ss_pred CceEEEEEEEEEEecccccccccccc------ccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCC
Q psy17371 73 NMVAQVKISYLEIYNEFVYDLLSSER------KALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMN 146 (237)
Q Consensus 73 ~~~~~v~vS~~EIy~e~v~DLL~~~~------~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n 146 (237)
+.|++||+|||+|+|+|||++.. +.+.++++++++++++|++++.|.|++|+.++|..|.++|...++.+|
T Consensus 130 ---~~v~~S~~EIyne~v~DLL~~~~~~~~~~~~l~i~ed~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~N 206 (345)
T cd01368 130 ---YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLREDHNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLN 206 (345)
T ss_pred ---eeEEEEEEEEeCCEeEeCCCCccccccCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHhhccceeccccCc
Confidence 99999999999999999998753 469999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEEEecCC------CceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy17371 147 DKSSRSHSIFQIQLTLTEDTG------SSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSD 220 (237)
Q Consensus 147 ~~ssrsH~v~~i~v~~~~~~~------~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~ 220 (237)
..|||||+||+|++.+..... .......|+|+||||||+|+..+.+..+.+++|+..||+||++|++||.+|++
T Consensus 207 ~~SSRSH~i~~i~v~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~g~~~~E~~~IN~SL~aL~~vi~aL~~ 286 (345)
T cd01368 207 RESSRSHSVFTIKLVQAPGDSDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRE 286 (345)
T ss_pred CCCCCceEEEEEEEEEeccCcccccccCCCceEEEEEEEEecccccccccccccchhhhhhhhhhHHHHHHHHHHHHHHh
Confidence 999999999999999876322 12335789999999999999999999999999999999999999999999987
Q ss_pred ------CCCCCCCCCchhhhhcC
Q psy17371 221 ------HSAVPPYRNSTLTYLLK 237 (237)
Q Consensus 221 ------~~~~vpyrdSkLT~lLq 237 (237)
+..||||||||||+|||
T Consensus 287 ~~~~~~~~~~iPyR~SkLT~lL~ 309 (345)
T cd01368 287 NQLSGSTNKMVPYRDSKLTHLFQ 309 (345)
T ss_pred hhcccCCCCcCCCcCCHHHHHHH
Confidence 45799999999999996
No 7
>KOG0243|consensus
Probab=100.00 E-value=2.3e-57 Score=420.54 Aligned_cols=231 Identities=38% Similarity=0.545 Sum_probs=202.4
Q ss_pred cccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCC--CCCCCccccchhHHHhhccCC
Q psy17371 7 PLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDS--SLKETTGIIPRFCHQLFDQIP 71 (237)
Q Consensus 7 ~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~--~~~~~~Gii~r~~~~Lf~~~~ 71 (237)
.+||.||-..+.+ +|+.++.|++..+ |++||||||||.|.-... .++++.|||||++.+||+.++
T Consensus 97 ftFDkVFGpes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGIIPRal~~IFd~Le 176 (1041)
T KOG0243|consen 97 FTFDKVFGPESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGIIPRALRQIFDTLE 176 (1041)
T ss_pred eecceeeCcchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCcchHHHHHHHHHHH
Confidence 5788899555544 9999999977766 777777777777743222 235789999999999999997
Q ss_pred CC-ceEEEEEEEEEEecccccccccccc---ccceeeecC-----CCCeeecCcEEEEecCHHHHHHHHHHHHhhCcccc
Q psy17371 72 SN-MVAQVKISYLEIYNEFVYDLLSSER---KALKVRESP-----DTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATAS 142 (237)
Q Consensus 72 ~~-~~~~v~vS~~EIy~e~v~DLL~~~~---~~~~i~~~~-----~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~ 142 (237)
.. .+|+|.|||+|+|||+++|||++.. +.+.+.+++ .+++.|+|+.++.|.++.|++++|.+|...|++++
T Consensus 177 ~~~~EYsvKVSfLELYNEEl~DLLa~~~~~~~~~~~k~~~~~~~~kggV~vkGlEEi~V~~A~ei~klLekGs~kRrtAa 256 (1041)
T KOG0243|consen 177 AQGAEYSVKVSFLELYNEELTDLLASEDTSDKKLRIKDDSTIVDGKGGVIVKGLEEIIVTNADEIYKLLEKGSKKRRTAA 256 (1041)
T ss_pred hcCCeEEEEEEehhhhhHHHHHhcCCccccccccccccCCcccCCcCcEEEecceeeeecchhHHHHHHHhhhhHhHHHH
Confidence 76 6999999999999999999999862 455555555 68899999999999999999999999999999999
Q ss_pred CCCCCCCCCceEEEEEEEEEEe-cCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcC
Q psy17371 143 TNMNDKSSRSHSIFQIQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDH 221 (237)
Q Consensus 143 ~~~n~~ssrsH~v~~i~v~~~~-~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~ 221 (237)
|.+|..|||||+||+|+|.... ..++....+.|+|++|||||||..+.+++.+.+.+|...||+||.+||+||.||.++
T Consensus 257 Tl~N~~SSRSHsIFsItvhike~t~~geelvK~GKLNLVDLAGSENI~RSGA~~~RArEAG~INqSLLTLGRVInALVe~ 336 (1041)
T KOG0243|consen 257 TLMNDQSSRSHSIFSITVHIKENTPEGEELVKIGKLNLVDLAGSENISRSGARNGRAREAGEINQSLLTLGRVINALVEH 336 (1041)
T ss_pred HHhhhhccccceEEEEEEEEecCCCcchhhHhhcccceeeccccccccccccccchhHHhhhhhHHHHHHHHHHHHHHcc
Confidence 9999999999999999998876 444555578999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCchhhhhcC
Q psy17371 222 SAVPPYRNSTLTYLLK 237 (237)
Q Consensus 222 ~~~vpyrdSkLT~lLq 237 (237)
..|||||+||||||||
T Consensus 337 s~HIPYRESKLTRLLQ 352 (1041)
T KOG0243|consen 337 SGHIPYRESKLTRLLQ 352 (1041)
T ss_pred CCCCCchHHHHHHHHH
Confidence 9999999999999997
No 8
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=100.00 E-value=5.9e-55 Score=377.19 Aligned_cols=227 Identities=37% Similarity=0.507 Sum_probs=204.0
Q ss_pred cccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCCC
Q psy17371 7 PLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSN 73 (237)
Q Consensus 7 ~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~~ 73 (237)
..||++|+. ..+ +|+..++|+++.+ |++||||||||+|+..+. .++||+||++++||+.++..
T Consensus 50 f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~---~~~Glipr~~~~lf~~~~~~ 125 (334)
T cd01375 50 FKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESY---KDRGLIPRALEQVFREVAMR 125 (334)
T ss_pred EEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcc---cCCchHHHHHHHHHHHHHhc
Confidence 567888876 544 8888888866654 888888888888876433 67999999999999998654
Q ss_pred --ceEEEEEEEEEEecccccccccccc------ccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCC
Q psy17371 74 --MVAQVKISYLEIYNEFVYDLLSSER------KALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNM 145 (237)
Q Consensus 74 --~~~~v~vS~~EIy~e~v~DLL~~~~------~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~ 145 (237)
..+.|++||+|||+|+++|||++.. +.+.+++++.++++++|++++.|.+++|++.++..|..+|...++.+
T Consensus 126 ~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~~~~~~l~i~e~~~~~~~v~gl~~~~v~s~~e~~~~~~~g~~~R~~~~t~~ 205 (334)
T cd01375 126 ATKTYTVHVSYLEIYNEQLYDLLGDTPEALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSM 205 (334)
T ss_pred cCcceEEEEEEEEEECCEeecCCCCCccccccCCceEEEEcCCCCEEeCCcEEEEeCCHHHHHHHHHHHHhhcccccCcC
Confidence 5789999999999999999999873 67899999999999999999999999999999999999999999999
Q ss_pred CCCCCCceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCC-CC
Q psy17371 146 NDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHS-AV 224 (237)
Q Consensus 146 n~~ssrsH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~-~~ 224 (237)
|..|||||+||+++|.+.+..........|+|+||||||+|+..+.+..+..++|+..||+||++|++||.+|++++ .|
T Consensus 206 n~~sSRSH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~e~~~iN~SL~~L~~vi~~l~~~~~~~ 285 (334)
T cd01375 206 NQASSRSHCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLEQVINALSEKARTH 285 (334)
T ss_pred cCCcCcCeEEEEEEEEEEecCCCCCceEEEEEEEEECCCCCccccccCchhhhhhhhhhhhhHHHHHHHHHHHHhCCCCC
Confidence 99999999999999999864445555788999999999999999999999999999999999999999999999999 89
Q ss_pred CCCCCchhhhhcC
Q psy17371 225 PPYRNSTLTYLLK 237 (237)
Q Consensus 225 vpyrdSkLT~lLq 237 (237)
|||||||||+|||
T Consensus 286 ipyRdSkLT~lL~ 298 (334)
T cd01375 286 VPYRNSKLTHVLR 298 (334)
T ss_pred CCCcccHHHHHHH
Confidence 9999999999996
No 9
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=100.00 E-value=8.1e-55 Score=374.60 Aligned_cols=220 Identities=31% Similarity=0.445 Sum_probs=199.0
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCC
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS 72 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~ 72 (237)
...||++|.....+ +|+..++|+++.+ |++||||||||+|+. +++||+||++++||+.+++
T Consensus 52 ~f~FD~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~------~~~Glipr~~~~lf~~~~~ 125 (322)
T cd01367 52 TFRFDYVFDEAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDE------NQEGLYALAARDIFRLLAQ 125 (322)
T ss_pred eEecceEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcC------CcCccHHHHHHHHHHHHhc
Confidence 45778888665544 9999888877655 778888888888777 8899999999999999876
Q ss_pred C-ceEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCCC
Q psy17371 73 N-MVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSR 151 (237)
Q Consensus 73 ~-~~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssr 151 (237)
. .++.|++||+|||+|+++|||++ .+.+.+++++.++++++|+++++|.|++|++++|+.|.++|...++.+|..|||
T Consensus 126 ~~~~~~v~~S~~EIy~e~v~DLL~~-~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n~~SSR 204 (322)
T cd01367 126 PNDDLGVTVSFFEIYGGKLFDLLND-RKRLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSR 204 (322)
T ss_pred cccccEEEEEEEeeecCchhhhccC-ccceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHhcccccccCcCCCCccc
Confidence 5 67899999999999999999988 678999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcC-chhHHHHHHHHHhHHHHHHHHHHHHhhcCCCCCCCCCc
Q psy17371 152 SHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTK-ATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRNS 230 (237)
Q Consensus 152 sH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~-~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~vpyrdS 230 (237)
||+||++++.+... ....|+|+||||||+|+..... ..+.+.+|+..||+||++|++||.+|+++++|||||||
T Consensus 205 SH~i~~i~v~~~~~-----~~~~s~l~~vDLAGsE~~~~~~~~~~~~~~e~~~IN~SL~~L~~vi~al~~~~~~iPyRdS 279 (322)
T cd01367 205 SHAILQIILKNKKL-----NKLLGKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRALASNKAHVPFRGS 279 (322)
T ss_pred ceEEEEEEEEEecC-----CeeEEEEEEeecCCccccccccccchhhHHhHhHHhHHHHHHHHHHHHHhcCCCcCCCccC
Confidence 99999999998764 2568999999999999988755 46789999999999999999999999999999999999
Q ss_pred hhhhhcC
Q psy17371 231 TLTYLLK 237 (237)
Q Consensus 231 kLT~lLq 237 (237)
|||+|||
T Consensus 280 kLT~lL~ 286 (322)
T cd01367 280 KLTQVLR 286 (322)
T ss_pred HHHHHHH
Confidence 9999996
No 10
>PLN03188 kinesin-12 family protein; Provisional
Probab=100.00 E-value=4.9e-55 Score=409.24 Aligned_cols=232 Identities=34% Similarity=0.501 Sum_probs=200.1
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCC----CCCCCCccccchhHHHhhc
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLD----SSLKETTGIIPRFCHQLFD 68 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~----~~~~~~~Gii~r~~~~Lf~ 68 (237)
...||+||.....+ ||+..++|+++++ |++||||||||+|+... .....++|||||++++||+
T Consensus 133 tFtFD~VFdp~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~~~~~de~~s~~e~GIIPRaledLF~ 212 (1320)
T PLN03188 133 TFTFDSIADPESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPANGLLEEHLSGDQQGLTPRVFERLFA 212 (1320)
T ss_pred EEeCCeeeCCCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCCCcccccccccccCCchHHHHHHHHH
Confidence 35678888655544 8888888865543 88888888888886421 1113678999999999999
Q ss_pred cCCC--------CceEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCcc
Q psy17371 69 QIPS--------NMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARAT 140 (237)
Q Consensus 69 ~~~~--------~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~ 140 (237)
.+.. ...|.|++||+|||||+|+|||++....+.+++++.++++|.|++++.|.|++++.++|..|.++|+.
T Consensus 213 ~I~e~q~k~~d~~~~y~V~vSyLEIYNEkI~DLLsp~~k~L~IRED~kgGv~VeGLTEv~V~S~ED~l~LL~~G~~nR~t 292 (1320)
T PLN03188 213 RINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVKSGVYVENLTEEYVKTMKDVTQLLIKGLSNRRT 292 (1320)
T ss_pred HHHhhhhhccccccceEEEEEEEeeecCcceeccccccCCceEEEcCCCCeEeCCCeEEeCCCHHHHHHHHHHHhcccee
Confidence 8753 25789999999999999999999988889999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCceEEEEEEEEEEec--CCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHh
Q psy17371 141 ASTNMNDKSSRSHSIFQIQLTLTED--TGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNL 218 (237)
Q Consensus 141 ~~~~~n~~ssrsH~v~~i~v~~~~~--~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL 218 (237)
++|.+|..|||||+||+|.|.+... ..+......|+|+||||||+||...++..|.+++|+..||+||++|++||.+|
T Consensus 293 asT~mN~~SSRSHaIFtI~Ves~~k~~~dg~ss~r~SkLnLVDLAGSER~kkTga~G~RLkEA~~INKSLsaLGnVI~AL 372 (1320)
T PLN03188 293 GATSINAESSRSHSVFTCVVESRCKSVADGLSSFKTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINIL 372 (1320)
T ss_pred ccCCCCCccCCCceeEEEEEEEeecccCCCCcceEEEEEEEEECCCchhccccCcccHHHHHHHHHhHHHHHHHHHHHHH
Confidence 9999999999999999999987652 22222356899999999999999999999999999999999999999999999
Q ss_pred hc-----CCCCCCCCCchhhhhcC
Q psy17371 219 SD-----HSAVPPYRNSTLTYLLK 237 (237)
Q Consensus 219 ~~-----~~~~vpyrdSkLT~lLq 237 (237)
+. +.+||||||||||+|||
T Consensus 373 ae~Sq~gk~~HIPYRDSKLTrLLQ 396 (1320)
T PLN03188 373 AEISQTGKQRHIPYRDSRLTFLLQ 396 (1320)
T ss_pred HHhhccCCCCcCCCCcchHHHHHH
Confidence 85 23699999999999996
No 11
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=100.00 E-value=3.2e-54 Score=372.61 Aligned_cols=229 Identities=41% Similarity=0.594 Sum_probs=203.8
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCC
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS 72 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~ 72 (237)
...||++|.....+ +|+..++|+++.+ |++||||||||+|+.... +++|||||++++||+.+++
T Consensus 49 ~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~---~~~Glipr~~~~Lf~~~~~ 125 (333)
T cd01371 49 VFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVREPP---ELRGIIPNSFAHIFGHIAK 125 (333)
T ss_pred eeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCCCcc---cccchHHHHHHHHHHHHhh
Confidence 35678888665544 8888888876655 888888888888877433 5899999999999998865
Q ss_pred C--ceEEEEEEEEEEecccccccccccc-ccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCC
Q psy17371 73 N--MVAQVKISYLEIYNEFVYDLLSSER-KALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKS 149 (237)
Q Consensus 73 ~--~~~~v~vS~~EIy~e~v~DLL~~~~-~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~s 149 (237)
. ..+.|.+||+|||+|+|+|||++.. +.+.+++++.++++++|++++.|.|++|+..++..|.++|...++..|..|
T Consensus 126 ~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~~~~~~l~~g~~~R~~~~t~~n~~s 205 (333)
T cd01371 126 AENVQFLVRVSYLEIYNEEVRDLLGKDQKKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDS 205 (333)
T ss_pred ccCccEEEEEEEEEeeCCeeeeCCCCCCCCceeEEEcCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhhCccccccccCCC
Confidence 4 6789999999999999999999874 689999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEEEEEecC-CCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCCC-CCCC
Q psy17371 150 SRSHSIFQIQLTLTEDT-GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSA-VPPY 227 (237)
Q Consensus 150 srsH~v~~i~v~~~~~~-~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~-~vpy 227 (237)
||||+||+|+|.+.+.. .+......|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+++++ ||||
T Consensus 206 sRSH~i~~i~v~~~~~~~~~~~~~~~s~L~~VDLAGsEr~~~~~~~~~~~~E~~~iN~sL~~L~~vi~al~~~~~~~ipy 285 (333)
T cd01371 206 SRSHSIFTITIECSEKGEDGENHIRVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNVISALVDGKSTHIPY 285 (333)
T ss_pred CCCcEEEEEEEEEEeccCCCCCcEEEEEEEEEECCCCCcccccCCchhhhHhHhhhhhHHHHHHHHHHHHHhCCCCcCCC
Confidence 99999999999988743 233336789999999999999999989999999999999999999999999999886 9999
Q ss_pred CCchhhhhcC
Q psy17371 228 RNSTLTYLLK 237 (237)
Q Consensus 228 rdSkLT~lLq 237 (237)
||||||+|||
T Consensus 286 R~SkLT~lL~ 295 (333)
T cd01371 286 RDSKLTRLLQ 295 (333)
T ss_pred ccCHHHHHHH
Confidence 9999999996
No 12
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=100.00 E-value=2.5e-54 Score=371.26 Aligned_cols=222 Identities=33% Similarity=0.465 Sum_probs=201.3
Q ss_pred Ccccchhhhhhhh--HHHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCC
Q psy17371 6 NPLQSHIEESLAT--LRYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS 72 (237)
Q Consensus 6 ~~~~~~~~~~~~~--~~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~ 72 (237)
...||++|..... .+|+..+.|+++.+ |++||||||||+|+. .++|||||++++||+.+++
T Consensus 48 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~------~~~Glipr~~~~Lf~~~~~ 121 (319)
T cd01376 48 KYQFDAFYGTECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDP------NEPGLIPRTLSDLLRMGRK 121 (319)
T ss_pred EEecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCc------CccchHHHHHHHHHHHHhh
Confidence 3458888854443 38888888866655 888888888888887 7899999999999998865
Q ss_pred C-ceEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCCC
Q psy17371 73 N-MVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSR 151 (237)
Q Consensus 73 ~-~~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssr 151 (237)
. +.+.|++||+|||+|+|+|||++....+.+++++.+++++.|+++++|.|++|+.+++..|.++|...++.+|..|||
T Consensus 122 ~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~SSR 201 (319)
T cd01376 122 QAWTGAFSMSYYEIYNEKVYDLLEPAKKELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSR 201 (319)
T ss_pred ccccceEEEEEEEEECCEeeEccCCCCCCceEEEcCCCCEEeeCCEEEEeCCHHHHHHHHHHHHhhhccccCcCCCccCC
Confidence 4 789999999999999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCCCCCCCCCch
Q psy17371 152 SHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRNST 231 (237)
Q Consensus 152 sH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~vpyrdSk 231 (237)
||+||++.+.+..... ...|+|+||||||+|+....+..+.+++|+..||+||++|++||.+|+.+.+|||||||+
T Consensus 202 SH~i~~i~v~~~~~~~----~~~s~l~~VDLAGsE~~~~~~~~g~~~~e~~~iN~Sl~~L~~vi~aL~~~~~~ipyr~S~ 277 (319)
T cd01376 202 SHAVLRIKVTQPASNI----QLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALNKGLPRIPYRESK 277 (319)
T ss_pred CeEEEEEEEEEECCCc----eEEEEEEEEECCCCCcccccCCccchhhhhhhhhhhHHHHHHHHHHHhcCCCcCCCccCH
Confidence 9999999999876422 568999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhcC
Q psy17371 232 LTYLLK 237 (237)
Q Consensus 232 LT~lLq 237 (237)
||+|||
T Consensus 278 LT~lL~ 283 (319)
T cd01376 278 LTRLLQ 283 (319)
T ss_pred HHHHHH
Confidence 999996
No 13
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=100.00 E-value=4.7e-54 Score=374.71 Aligned_cols=225 Identities=48% Similarity=0.682 Sum_probs=198.8
Q ss_pred cccchhhhhh---------hhHHHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHh
Q psy17371 7 PLQSHIEESL---------ATLRYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQL 66 (237)
Q Consensus 7 ~~~~~~~~~~---------~~~~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~L 66 (237)
-.||++|... +..+|+..++|+++.+ |++||||||||+|+. .++|||||++++|
T Consensus 50 f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~Tm~G~~------~~~Gli~r~~~~L 123 (356)
T cd01365 50 FSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYTMMGYK------EEKGIIPRLCEEL 123 (356)
T ss_pred EECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEEecCCC------CCCchHHHHHHHH
Confidence 4577777433 3448888777766544 888888888888887 6899999999999
Q ss_pred hccCCCC----ceEEEEEEEEEEecccccccccccc---ccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCc
Q psy17371 67 FDQIPSN----MVAQVKISYLEIYNEFVYDLLSSER---KALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARA 139 (237)
Q Consensus 67 f~~~~~~----~~~~v~vS~~EIy~e~v~DLL~~~~---~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~ 139 (237)
|+.++.. ..+.|++||+|||+|+|+|||++.. ..+.+++++..+++++|++++.|.|++|+.+++..|.++|.
T Consensus 124 f~~~~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~ 203 (356)
T cd01365 124 FQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNPKKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRT 203 (356)
T ss_pred HHHHhhccccCceEEEEEEEEEEECCeeeeCCCCCccCCcCceEEECCCCCEEeCCCEEEEeCCHHHHHHHHHHHHhccc
Confidence 9988654 5789999999999999999999863 67999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCCceEEEEEEEEEEecC--CCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHH
Q psy17371 140 TASTNMNDKSSRSHSIFQIQLTLTEDT--GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITN 217 (237)
Q Consensus 140 ~~~~~~n~~ssrsH~v~~i~v~~~~~~--~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~a 217 (237)
..++.+|..|||||+||++++.+.... ........|+|+||||||+|+....+..+.+++|+..||+||++|++||.+
T Consensus 204 ~~~t~~n~~SSRSH~i~~l~v~~~~~~~~~~~~~~~~s~l~~VDLAGsEr~~~~~~~~~~~~E~~~IN~SL~aL~~vi~~ 283 (356)
T cd01365 204 TASTNMNDTSSRSHAVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTLGKVISA 283 (356)
T ss_pred ccCCCCCCCcCCceEEEEEEEEEEecccCCCCCceEEEEEEeeecccccccccccccchhhHHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999987633 233446799999999999999999999999999999999999999999999
Q ss_pred hhcC--------CCCCCCCCchhhhhcC
Q psy17371 218 LSDH--------SAVPPYRNSTLTYLLK 237 (237)
Q Consensus 218 L~~~--------~~~vpyrdSkLT~lLq 237 (237)
|+.+ +.||||||||||+|||
T Consensus 284 l~~~~~~~~~~~~~~ipyR~SkLT~lL~ 311 (356)
T cd01365 284 LADNSSAKSKKKSSFIPYRDSVLTWLLK 311 (356)
T ss_pred HHhcccccccCCCCcCCCcCcHHHHHHH
Confidence 9875 3699999999999996
No 14
>KOG0245|consensus
Probab=100.00 E-value=1.1e-55 Score=403.99 Aligned_cols=218 Identities=45% Similarity=0.720 Sum_probs=193.5
Q ss_pred HHHHHhhhhhhhc--CcceeeeEeeeecCCCCCCC-----CCCccccchhHHHhhccCCCC----ceEEEEEEEEEEecc
Q psy17371 20 RYALQARNIFEKI--GTNEFVFHFSMMGDNLDSSL-----KETTGIIPRFCHQLFDQIPSN----MVAQVKISYLEIYNE 88 (237)
Q Consensus 20 ~y~~~~~~i~~~~--G~~~sgktyt~~G~~~~~~~-----~~~~Gii~r~~~~Lf~~~~~~----~~~~v~vS~~EIy~e 88 (237)
||+..|+++++.. |+|.|.++||++|+||++++ ++++|||||++++||.++..+ ..|.|.|||+|||+|
T Consensus 71 VYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~~~~e~GIIPrlCEeLF~ri~~nq~~~~sy~VevSymEIYcE 150 (1221)
T KOG0245|consen 71 VYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQEPDEPGIIPRLCEELFSRIADNQSQQMSYSVEVSYMEIYCE 150 (1221)
T ss_pred HHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccCCCCCCCchhHHHHHHHHHHhhcccccceEEEEEeehhHHHH
Confidence 8888888865544 55555555555555555555 378999999999999999655 899999999999999
Q ss_pred ccccccc-cc-cccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCCCceEEEEEEEEEEe--
Q psy17371 89 FVYDLLS-SE-RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTE-- 164 (237)
Q Consensus 89 ~v~DLL~-~~-~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssrsH~v~~i~v~~~~-- 164 (237)
.|+|||+ |. ++.++++|.|..|++|.+|+...|+|..|+.++++.|++.|++++|.||..|||||+||+|...|..
T Consensus 151 rVrDLL~~p~~kg~LRVREHP~lGPYVedLS~~aV~Sy~dI~~~md~GNkqRTtAATnMNdtSSRSHaVFtIvftQk~~~ 230 (1221)
T KOG0245|consen 151 RVRDLLNAPKSKGGLRVREHPILGPYVEDLSKLAVTSYADIQDLMDEGNKQRTTAATNMNDTSSRSHAVFTIVFTQKKHD 230 (1221)
T ss_pred HHHHHhhCCCCCCCceeeccCccChhHhHhhhcccccHHHHHHHHHhcchhhhhhhhccccccccceeEEEEEEEeeecc
Confidence 9999999 54 7889999999999999999999999999999999999999999999999999999999999999987
Q ss_pred cCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCCC-------CCCCCCchhhhhcC
Q psy17371 165 DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSA-------VPPYRNSTLTYLLK 237 (237)
Q Consensus 165 ~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~-------~vpyrdSkLT~lLq 237 (237)
...+-...++|++++||||||||...+++.|.++|||..|||||.+||.||.||++.++ +||||||.||+|||
T Consensus 231 ~~~~l~sek~SKIsLVDLAGSERasstGa~G~RLKEGa~INKSLtTLGkVISALAe~~~~k~~ks~fIPYRDSVLTWLLk 310 (1221)
T KOG0245|consen 231 QDTGLDSEKVSKISLVDLAGSERASSTGANGDRLKEGANINKSLTTLGKVISALAESQKGKKKKSDFIPYRDSVLTWLLK 310 (1221)
T ss_pred ccCCCcceeeeeeeEEeccCcccccccCCCccchhcccccchHHHHHHHHHHHHHHHhccCCCCCccccchHHHHHHHHH
Confidence 33333357899999999999999999999999999999999999999999999987552 99999999999996
No 15
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=100.00 E-value=1.1e-53 Score=368.63 Aligned_cols=227 Identities=40% Similarity=0.560 Sum_probs=203.5
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCC
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS 72 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~ 72 (237)
...||++|.....+ +|+..++|+++.+ |++||||||||+|+.... +++||+||++++||+.+.+
T Consensus 44 ~f~FD~vf~~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~---~~~Giipr~~~~Lf~~~~~ 120 (325)
T cd01369 44 TFSFDRVFPPNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDP---ELKGIIPRIVHDIFEHISS 120 (325)
T ss_pred EEEcCeEECCCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCcc---ccCChHHHHHHHHHHHHhh
Confidence 34677788554444 8888888876654 999999999999988432 5899999999999998754
Q ss_pred C---ceEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCC
Q psy17371 73 N---MVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKS 149 (237)
Q Consensus 73 ~---~~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~s 149 (237)
. .++.|++||+|||+|+++|||++.+..+.+++++.++++++|++++.|.|++|+.++|..|.++|...++.+|..|
T Consensus 121 ~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~i~~~~~~R~~~~t~~n~~s 200 (325)
T cd01369 121 MDENLEFHVKVSYLEIYMEKIRDLLDVSKDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEES 200 (325)
T ss_pred ccCCceEEEEEEEEEEECCChhhcccCccCCceEEEcCCCCEEEcCCEEEEcCCHHHHHHHHHHHHhhcccccCcCCCcc
Confidence 3 6799999999999999999999988889999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCC-CCCCCC
Q psy17371 150 SRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHS-AVPPYR 228 (237)
Q Consensus 150 srsH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~-~~vpyr 228 (237)
||||+||+|+|.+.+..... ...|+|+||||||+|+..+.+..+.+++|+..||+||++|++||.+|++++ +|||||
T Consensus 201 sRSH~i~~i~v~~~~~~~~~--~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~~vpyR 278 (325)
T cd01369 201 SRSHSIFLITLKQENVETGS--KKRGKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINALTDGKSTHIPYR 278 (325)
T ss_pred ccccEEEEEEEEEEecCCCC--EEEEEEEEEECCCCCcccccCCcchhHHHHHHHhHHHHHHHHHHHHHHcCCCCcCCCc
Confidence 99999999999987743332 568999999999999999999999999999999999999999999999988 899999
Q ss_pred CchhhhhcC
Q psy17371 229 NSTLTYLLK 237 (237)
Q Consensus 229 dSkLT~lLq 237 (237)
||+||+|||
T Consensus 279 ~S~LT~lL~ 287 (325)
T cd01369 279 DSKLTRILQ 287 (325)
T ss_pred cCHHHHHHH
Confidence 999999996
No 16
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=100.00 E-value=6.2e-54 Score=369.40 Aligned_cols=225 Identities=38% Similarity=0.558 Sum_probs=200.2
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCC
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS 72 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~ 72 (237)
...||++|...... +|+..++|+++.+ |++||||||||+|+. .++||+||++++||+.+.+
T Consensus 41 ~f~fd~vf~~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~------~~~Gli~r~~~~lf~~~~~ 114 (321)
T cd01374 41 SFTFDRVFGGESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDE------QEPGIIPLAVRDIFQRIQD 114 (321)
T ss_pred EEecCeEECCCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCC------CCCchHHHHHHHHHHHHhc
Confidence 44677888665433 8888888866654 777777777777776 7899999999999998854
Q ss_pred C--ceEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCC
Q psy17371 73 N--MVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSS 150 (237)
Q Consensus 73 ~--~~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ss 150 (237)
. .++.|++||+|||+|+|+|||++....+++++++.++++++|++++.|.|++|+.++|..|.++|...++..|..||
T Consensus 115 ~~~~~~~v~~S~~Eiy~e~v~DLL~~~~~~l~i~~~~~~~~~v~gl~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~ss 194 (321)
T cd01374 115 TPDREFLLRVSYLEIYNEKIKDLLSPSPQELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSS 194 (321)
T ss_pred ccCceEEEEEEEEEEEcCEeEEccCCCCCCceEEECCCCCEEeCCceEEEeCCHHHHHHHHHHHHhccccccCcCCCccc
Confidence 3 68899999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred CceEEEEEEEEEEecCC-CceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCC--CCCCC
Q psy17371 151 RSHSIFQIQLTLTEDTG-SSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHS--AVPPY 227 (237)
Q Consensus 151 rsH~v~~i~v~~~~~~~-~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~--~~vpy 227 (237)
|||+||+|+|.+..... .......|+|+||||||+|+..+.+ .+.+++|+..||+||.+|++||.+|++++ +||||
T Consensus 195 RSH~i~~i~v~~~~~~~~~~~~~~~s~l~~vDLAGsE~~~~~~-~~~~~~e~~~iN~Sl~~L~~vi~al~~~~~~~~vpy 273 (321)
T cd01374 195 RSHTIFQLTIESRERGDSESGTVRVSTLNLIDLAGSERASQTG-AGERRKEGSFINKSLLTLGTVISKLSEGKNSGHIPY 273 (321)
T ss_pred cccEEEEEEEEEEecCCCCCCcEEEEEEEEEECCCCCccccCC-CCccccccchhhhHHHHHHHHHHHHHhcCCCCcCCC
Confidence 99999999999987433 2333678999999999999999887 88999999999999999999999999996 89999
Q ss_pred CCchhhhhcC
Q psy17371 228 RNSTLTYLLK 237 (237)
Q Consensus 228 rdSkLT~lLq 237 (237)
||||||+|||
T Consensus 274 R~SkLT~lL~ 283 (321)
T cd01374 274 RDSKLTRILQ 283 (321)
T ss_pred cCCHHHHHHH
Confidence 9999999996
No 17
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=100.00 E-value=2.8e-53 Score=368.36 Aligned_cols=232 Identities=37% Similarity=0.515 Sum_probs=204.4
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCC
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS 72 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~ 72 (237)
...||++|.....+ +|+..++|+++.+ |++||||||||+|+.......+++|||||++++||+.+++
T Consensus 41 ~f~FD~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Giipr~~~~LF~~~~~ 120 (341)
T cd01372 41 SFTFDYVFDPSTSQEEVYNTCVAPLVDGLFEGYNATVLAYGQTGSGKTYTMGTAFTASEDEEEVGIIPRAIQHIFKKIDE 120 (341)
T ss_pred EEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCcEEecCCCccccccccCChHHHHHHHHHHHHHh
Confidence 34678888655544 8888888866555 8888888888888764322247899999999999998865
Q ss_pred C---ceEEEEEEEEEEeccccccccccc---cccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCC
Q psy17371 73 N---MVAQVKISYLEIYNEFVYDLLSSE---RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMN 146 (237)
Q Consensus 73 ~---~~~~v~vS~~EIy~e~v~DLL~~~---~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n 146 (237)
. .++.|++||+|||+|+|+|||++. ...+.+++++.+++++.|++++.|.|++|++++|..|.++|...++.+|
T Consensus 121 ~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~~i~gl~~~~v~s~~e~~~~l~~g~~~R~~~~t~~n 200 (341)
T cd01372 121 KKDEPDFQLKVSFLELYNEEVRDLLSPSTSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMN 200 (341)
T ss_pred ccccceEEEEEEEEEeECCeeecCCCCcccCCCCceEEECCCCCEecCCCEEEEECCHHHHHHHHHHHHHhcccccccCC
Confidence 4 579999999999999999999986 5789999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEEEecCC--------CceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHh
Q psy17371 147 DKSSRSHSIFQIQLTLTEDTG--------SSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNL 218 (237)
Q Consensus 147 ~~ssrsH~v~~i~v~~~~~~~--------~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL 218 (237)
..|||||+||+|+|.+..... .......|+|+||||||+|+..+....+.+++|+..||+||.+|++||.+|
T Consensus 201 ~~sSRsH~i~~i~v~~~~~~~~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~in~sl~aL~~vi~al 280 (341)
T cd01372 201 SQSSRSHAIFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINSGLLALGNVISAL 280 (341)
T ss_pred CccCcCcEEEEEEEEEEecCCccccccccCCCceeeEEEEEEECCCCcccccccCchhHhHHHHHHhHHHHHHHHHHHHH
Confidence 999999999999999987431 223367899999999999999999999999999999999999999999999
Q ss_pred hcCC---CCCCCCCchhhhhcC
Q psy17371 219 SDHS---AVPPYRNSTLTYLLK 237 (237)
Q Consensus 219 ~~~~---~~vpyrdSkLT~lLq 237 (237)
+.++ .||||||||||+|||
T Consensus 281 ~~~~~~~~~ipyR~S~LT~lL~ 302 (341)
T cd01372 281 GDESKKGSHVPYRDSKLTRLLQ 302 (341)
T ss_pred HhcCCCCCCCCCcccHHHHHHH
Confidence 9987 699999999999996
No 18
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=100.00 E-value=2.5e-53 Score=369.91 Aligned_cols=232 Identities=40% Similarity=0.564 Sum_probs=204.3
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCC-----CCCCCccccchhHHHhh
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDS-----SLKETTGIIPRFCHQLF 67 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~-----~~~~~~Gii~r~~~~Lf 67 (237)
...||++|.....+ +|+..+.|+++.+ |++||||||||+|..+.. ...+++|||||++++||
T Consensus 49 ~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~~~~~~~~~~~~~Glipr~~~~Lf 128 (352)
T cd01364 49 TYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTDNKGSTWELSPHAGIIPRALYQLF 128 (352)
T ss_pred eEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcccccccccccccCCchHHHHHHHH
Confidence 35678888654443 8998888876644 899999999999986442 11467999999999999
Q ss_pred ccCCCC-ceEEEEEEEEEEeccccccccccc---cccceeeec--CCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccc
Q psy17371 68 DQIPSN-MVAQVKISYLEIYNEFVYDLLSSE---RKALKVRES--PDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATA 141 (237)
Q Consensus 68 ~~~~~~-~~~~v~vS~~EIy~e~v~DLL~~~---~~~~~i~~~--~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~ 141 (237)
+.++.. ..++|++||+|||+|+|+|||++. .+++.++++ ..++++++|++++.|.|++|+.++|..|.++|...
T Consensus 129 ~~~~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~e~~~~~~g~~v~gl~~~~v~s~~e~~~~l~~g~~~R~~~ 208 (352)
T cd01364 129 EKLESQNTEYSVKVSYLELYNEELFDLLSSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTA 208 (352)
T ss_pred HHHHhccceeEEEEEEEEeeCCeeeeCCCCccccCccceEEeccCcCCCEEeCCcEEEEeCCHHHHHHHHHHHhhhcccc
Confidence 988664 689999999999999999999986 678999999 58999999999999999999999999999999999
Q ss_pred cCCCCCCCCCceEEEEEEEEEEecC-CCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhc
Q psy17371 142 STNMNDKSSRSHSIFQIQLTLTEDT-GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSD 220 (237)
Q Consensus 142 ~~~~n~~ssrsH~v~~i~v~~~~~~-~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~ 220 (237)
++.+|..|||||+||+|.+.+.... .+......|+|+||||||+|+..+.+..+.+.+|+..||+||.+|++||.+|+.
T Consensus 209 ~t~~n~~sSRSH~i~~i~i~~~~~~~~~~~~~~~s~l~~VDLAGsE~~~~~~~~~~~~~e~~~iN~SL~~L~~vi~al~~ 288 (352)
T cd01364 209 ATLMNDQSSRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSLLTLGRVINALVE 288 (352)
T ss_pred cCcCCCCCCCCceEEEEEEEEeccCCCCCccEEEEEEEEEECCCccccccccCcchhhHHHhhhhHHHHHHHHHHHHHHc
Confidence 9999999999999999999987632 233335689999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCchhhhhcC
Q psy17371 221 HSAVPPYRNSTLTYLLK 237 (237)
Q Consensus 221 ~~~~vpyrdSkLT~lLq 237 (237)
+++|||||+||||+|||
T Consensus 289 ~~~~vpyR~S~LT~lL~ 305 (352)
T cd01364 289 KSPHIPYRESKLTRLLQ 305 (352)
T ss_pred CCCCCCCcccHHHHHHH
Confidence 99999999999999996
No 19
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=100.00 E-value=1e-51 Score=356.94 Aligned_cols=222 Identities=38% Similarity=0.534 Sum_probs=196.5
Q ss_pred cccchhhhhhhhH--HHHHHhhhhhhh-----------cCcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCCC
Q psy17371 7 PLQSHIEESLATL--RYALQARNIFEK-----------IGTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSN 73 (237)
Q Consensus 7 ~~~~~~~~~~~~~--~y~~~~~~i~~~-----------~G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~~ 73 (237)
..||++|...... +|+. ..|+++. ||++||||||||+|.. +++||+||++++||+.+++.
T Consensus 47 f~fD~vf~~~~~q~~v~~~-v~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~------~~~Gli~r~~~~lf~~~~~~ 119 (329)
T cd01366 47 FSFDRVFDPDASQEDVFEE-VSPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPP------ENPGIIPRALEQLFNTAEEL 119 (329)
T ss_pred EecCEEECCCCCHHHHHHH-HHHHHHHHhCCCceEEEEeCCCCCCCcEEecCCC------CCCCcHHHHHHHHHHHHHhh
Confidence 4556666544433 6654 3554444 3888888888888887 88999999999999887543
Q ss_pred ----ceEEEEEEEEEEeccccccccccc---cccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCC
Q psy17371 74 ----MVAQVKISYLEIYNEFVYDLLSSE---RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMN 146 (237)
Q Consensus 74 ----~~~~v~vS~~EIy~e~v~DLL~~~---~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n 146 (237)
..+.|++||+|||+|+++|||++. .+.+.+++++.++++++|++++.|.|++|+.+++..|.++|....+..|
T Consensus 120 ~~~~~~~~v~~S~~EIy~e~v~DLL~~~~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n 199 (329)
T cd01366 120 KEKGWSYTITASMLEIYNETIRDLLATKPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMN 199 (329)
T ss_pred hccCceEEEEEEEEEEECCEeEECCCCCcCCCCceEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhhccccccccc
Confidence 689999999999999999999986 7889999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCCCCCC
Q psy17371 147 DKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPP 226 (237)
Q Consensus 147 ~~ssrsH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~vp 226 (237)
..|||||+||+++|.+.+.... ....|+|+||||||+|+..+.+..+.+++|+..||+||.+|++||.+|+.+.+|||
T Consensus 200 ~~sSRsH~i~~i~v~~~~~~~~--~~~~s~l~~VDLaGsE~~~~~~~~~~~~~e~~~in~Sl~~L~~vl~~l~~~~~~ip 277 (329)
T cd01366 200 EHSSRSHAVFQLKIRGTNLQTG--EQTRGKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGDVISALRSKDSHVP 277 (329)
T ss_pred CCCCCccEEEEEEEEEEcCCCC--cEEEEEEEEEECCCCcccccccccchhhHhHhhhhhHHHHHHHHHHHHhcCCCcCC
Confidence 9999999999999998875432 25789999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhhhhcC
Q psy17371 227 YRNSTLTYLLK 237 (237)
Q Consensus 227 yrdSkLT~lLq 237 (237)
|||||||+|||
T Consensus 278 yr~S~LT~lL~ 288 (329)
T cd01366 278 YRNSKLTYLLQ 288 (329)
T ss_pred CcccHhHHHHH
Confidence 99999999996
No 20
>KOG0239|consensus
Probab=100.00 E-value=4e-53 Score=388.14 Aligned_cols=224 Identities=38% Similarity=0.501 Sum_probs=203.8
Q ss_pred CcccchhhhhhhhH-HHHHHhhh-hhhhcCcceeeeEeeeecC-CCCCCCCCCccccchhHHHhhccCCCC---ceEEEE
Q psy17371 6 NPLQSHIEESLATL-RYALQARN-IFEKIGTNEFVFHFSMMGD-NLDSSLKETTGIIPRFCHQLFDQIPSN---MVAQVK 79 (237)
Q Consensus 6 ~~~~~~~~~~~~~~-~y~~~~~~-i~~~~G~~~sgktyt~~G~-~~~~~~~~~~Gii~r~~~~Lf~~~~~~---~~~~v~ 79 (237)
.++|++||+.+.++ .+...+.+ ++-+||++||||||||.|+ . +++|||||++++||+.+.+. |.|.+.
T Consensus 371 ~~sQ~~VF~e~~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~------~~~Giipral~~lF~~~~~~~~g~~y~~~ 444 (670)
T KOG0239|consen 371 LASQDDVFEEVSPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTP------EDPGIIPRALEKLFRTITSLKSGWKYDKT 444 (670)
T ss_pred cccHHHHHHHHHHHHHHHhcCcceeEEEecccCCCccccccCCCc------ccCCccHHHHHHHHHHHHhhccCceEEee
Confidence 56788888888877 67777777 3455899999999999995 4 78999999999999877554 899999
Q ss_pred EEEEEEeccccccccccc--cccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCCCceEEEE
Q psy17371 80 ISYLEIYNEFVYDLLSSE--RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157 (237)
Q Consensus 80 vS~~EIy~e~v~DLL~~~--~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssrsH~v~~ 157 (237)
++|+|||||+|+|||.+. ...+.|++++++.+.|.+++.+.|.+.+++..+++.|..+|..++|.+|.+|||||+||+
T Consensus 445 ~s~~EIYNe~i~DlL~~~~~~~k~~I~~~~~~~~~V~~~t~~~V~s~~~v~~ll~~g~~nRsv~~T~~Ne~SSRSH~v~~ 524 (670)
T KOG0239|consen 445 VSMLEIYNEAIRDLLSDESYVGKLEIVDDAEGNLMVPLLTVIKVGSSEEVDILLEIGLSNRSVASTASNERSSRSHLVFR 524 (670)
T ss_pred eehhHHHHHHHHHhccccccccceeEEEcCCCceecccceEEecCCHHHHHHHHHHhhccccccccccchhhhccceEEE
Confidence 999999999999999986 578999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCCCCCCCCCchhhhhcC
Q psy17371 158 IQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237 (237)
Q Consensus 158 i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~vpyrdSkLT~lLq 237 (237)
|+|...+...+. ...+.|+|||||||||+.+++..|.+++|.+.||+||++|++||.||+..+.||||||||||+|||
T Consensus 525 v~v~g~~~~t~~--~~~g~l~LVDLAGSER~~~s~~tG~RlkE~Q~INkSLS~LgdVi~AL~~k~~HiPyRNSKLT~lLq 602 (670)
T KOG0239|consen 525 VRIRGINELTGI--RVTGVLNLVDLAGSERVSKSGVTGERLKEAQNINKSLSALGDVISALASKRSHIPYRNSKLTQLLQ 602 (670)
T ss_pred EEEeccccCccc--ccccceeEeecccCcccCcCCCchhhhHHHHHhchhhhhhHHHHHHHhhcCCCCcccccchHHHhH
Confidence 999988633332 468889999999999999999999999999999999999999999999999999999999999997
No 21
>cd00106 KISc Kinesin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil
Probab=100.00 E-value=7.6e-51 Score=351.57 Aligned_cols=226 Identities=43% Similarity=0.610 Sum_probs=205.0
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCC
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS 72 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~ 72 (237)
...||++|...... +|+..++|+++.+ |++||||||||+|+. +++|||||++++||+.+++
T Consensus 46 ~f~fd~vf~~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~------~~~Gli~~~~~~Lf~~~~~ 119 (328)
T cd00106 46 SFTFDHVFDPNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSP------KDPGIIPRALEDLFNLIDE 119 (328)
T ss_pred EEECCeEEcCCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCC------CCCchHHHHHHHHHHHHhh
Confidence 34677777654433 8888887766554 899999999999988 8899999999999998876
Q ss_pred C----ceEEEEEEEEEEeccccccccccc--cccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCC
Q psy17371 73 N----MVAQVKISYLEIYNEFVYDLLSSE--RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMN 146 (237)
Q Consensus 73 ~----~~~~v~vS~~EIy~e~v~DLL~~~--~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n 146 (237)
. ..+.|++||+|||+|+|+|||++. ...+.+++++.+++.++|++++.|.|++|+.+++..|.++|...++..|
T Consensus 120 ~~~~~~~~~v~~S~~Ei~~e~v~DLL~~~~~~~~l~i~~~~~~~~~v~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n 199 (328)
T cd00106 120 RKEKNKSFSVSVSYLEIYNEKVYDLLSPEPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMN 199 (328)
T ss_pred ccccCceEEEEEEEEEEECCEeEECCCCCCCCCCcEEEEcCCCCEEEeCCEEEEeCCHHHHHHHHHHHHhhcCcccCcCC
Confidence 5 569999999999999999999998 8999999999999999999999999999999999999999999999999
Q ss_pred CCCCCceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCC--CC
Q psy17371 147 DKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHS--AV 224 (237)
Q Consensus 147 ~~ssrsH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~--~~ 224 (237)
..|+|||+||+++|.+............|+|+||||||+|+....+..+.+.+|+..||+||.+|++||.+|+.++ .|
T Consensus 200 ~~ssRSH~i~~i~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~vl~~l~~~~~~~~ 279 (328)
T cd00106 200 ERSSRSHAIFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNVISALSSGQKKKH 279 (328)
T ss_pred CCcCcCcEEEEEEEEEEecCCCCccEEEEEEEEEECCCCCcccccCCchhhhHhHHhhhhhHHHHHHHHHHHHhcCCCCc
Confidence 9999999999999999986554434679999999999999999988999999999999999999999999999999 89
Q ss_pred CCCCCchhhhhcC
Q psy17371 225 PPYRNSTLTYLLK 237 (237)
Q Consensus 225 vpyrdSkLT~lLq 237 (237)
||||+||||+|||
T Consensus 280 ip~r~SkLT~lL~ 292 (328)
T cd00106 280 IPYRDSKLTRLLQ 292 (328)
T ss_pred CCCcCcHHHHHHH
Confidence 9999999999996
No 22
>smart00129 KISc Kinesin motor, catalytic domain. ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.
Probab=100.00 E-value=7.9e-51 Score=352.30 Aligned_cols=226 Identities=42% Similarity=0.588 Sum_probs=204.7
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCC
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS 72 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~ 72 (237)
...||++|...... +|+..+.|+++.+ |++||||||||+|+. +++||+||++++||+.+.+
T Consensus 47 ~f~fD~vf~~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~------~~~Gli~~~~~~Lf~~~~~ 120 (335)
T smart00129 47 KFTFDKVFGATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTP------DSPGIIPRALKDLFEKIDK 120 (335)
T ss_pred EEecCEEECCCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCC------CCCCHHHHHHHHHHHHhhh
Confidence 35678888665544 8888888876644 899999999999987 7899999999999998866
Q ss_pred C---ceEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCC
Q psy17371 73 N---MVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKS 149 (237)
Q Consensus 73 ~---~~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~s 149 (237)
. ..+.|++||+|||+|+++|||++.++.+.+++++.++++++|++++.|.|++|+.+++..+.++|...++.+|..|
T Consensus 121 ~~~~~~~~v~~S~~ei~~e~v~DLL~~~~~~l~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~t~~n~~s 200 (335)
T smart00129 121 LEEGWQFQVKVSYLEIYNEKIRDLLNPSPKKLEIREDKKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEES 200 (335)
T ss_pred cccCceEEEEEEEEEEECCEEEECcCCCCCCcEEEECCCCCEEecCCEEEEeCCHHHHHHHHHHHHhccccccCCCCCCC
Confidence 4 5899999999999999999999989999999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcC--CCCCCC
Q psy17371 150 SRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDH--SAVPPY 227 (237)
Q Consensus 150 srsH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~--~~~vpy 227 (237)
+|||+||+|++.+............|+|+||||||+|+....+..+.+++|+..||+||.+|++||.+|+++ +.|+||
T Consensus 201 sRsH~i~~l~v~~~~~~~~~~~~~~s~l~~VDLaGse~~~~~~~~~~~~~e~~~in~sl~~L~~~l~~l~~~~~~~~ip~ 280 (335)
T smart00129 201 SRSHAVFTITVESKIKNSSSGSGKASKLNLVDLAGSERASKTGAEGDRLKEAGNINKSLSALGNVINALADGQKSRHIPY 280 (335)
T ss_pred CcceEEEEEEEEEEecCCCCCCEEEEEEEEEECCCCCccccccChhHHHHhhchhhhHHHHHHHHHHHHHhcCCCCCCCC
Confidence 999999999999885444445578999999999999999999999999999999999999999999999994 569999
Q ss_pred CCchhhhhcC
Q psy17371 228 RNSTLTYLLK 237 (237)
Q Consensus 228 rdSkLT~lLq 237 (237)
|+|+||+|||
T Consensus 281 r~S~LT~lL~ 290 (335)
T smart00129 281 RDSKLTRLLQ 290 (335)
T ss_pred cCcHhHHHHH
Confidence 9999999996
No 23
>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport. The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....
Probab=100.00 E-value=6.8e-52 Score=359.04 Aligned_cols=225 Identities=41% Similarity=0.582 Sum_probs=200.5
Q ss_pred cccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecC--CCCCCCCCCccccchhHHHhhccCC
Q psy17371 7 PLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGD--NLDSSLKETTGIIPRFCHQLFDQIP 71 (237)
Q Consensus 7 ~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~--~~~~~~~~~~Gii~r~~~~Lf~~~~ 71 (237)
..||+||.....+ +|+..++|+++.+ |++||||||||+|+ . .++||+||++++||+.++
T Consensus 43 f~FD~vf~~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~------~~~Gli~~~~~~lf~~~~ 116 (335)
T PF00225_consen 43 FRFDRVFDEDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSNDP------SEPGLIPRALRDLFSQIE 116 (335)
T ss_dssp EEESEEEETTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTST------TTBSHHHHHHHHHHHHHH
T ss_pred EEcCeEECCCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccccc------cccchhhhHHHHHhhhhc
Confidence 4678888766544 8888888876665 88888888888887 4 789999999999999886
Q ss_pred CC-----ceEEEEEEEEEEeccccccccccc----cccceeeecCCCC-eeecCcEEEEecCHHHHHHHHHHHHhhCccc
Q psy17371 72 SN-----MVAQVKISYLEIYNEFVYDLLSSE----RKALKVRESPDTG-IFVSDLSVHGVSSFSEMQKWLSEGNKARATA 141 (237)
Q Consensus 72 ~~-----~~~~v~vS~~EIy~e~v~DLL~~~----~~~~~i~~~~~~~-~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~ 141 (237)
.. ..+.|+|||+|||+|+|+|||++. ...+.+++++..+ +.++|++++.|.+++|+.++|..|.++|...
T Consensus 117 ~~~~~~~~~~~v~vS~~EIy~e~v~DLL~~~~~~~~~~l~i~~~~~~g~~~i~~l~~~~v~s~~~~~~~l~~~~~~R~~~ 196 (335)
T PF00225_consen 117 ERKEKSGYEFSVSVSYLEIYNEKVYDLLSPNNSKSRKPLKIREDSNKGSVYIKGLTEVEVKSAEEALQLLKKGQKNRRTA 196 (335)
T ss_dssp HHTTTSTEEEEEEEEEEEEETTEEEETTSTTSSSTTSEBEEEEETTTEEEEETTSEEEEESSHHHHHHHHHHHHHHHTCT
T ss_pred cccccccccccccccchhhhhhhhhhhcCccccccccccceeeccccccceeeccccccccccccccccccchhhccccc
Confidence 53 579999999999999999999987 3679999999876 9999999999999999999999999999999
Q ss_pred cCCCCCCCCCceEEEEEEEEEEecCCCce--eeeeeEEEEEEcCCCCCcCCcCc-hhHHHHHHHHHhHHHHHHHHHHHHh
Q psy17371 142 STNMNDKSSRSHSIFQIQLTLTEDTGSSV--TQKCSQINLVDLAGSERVAQTKA-TEERFKEGRNINLSLMTLGQVITNL 218 (237)
Q Consensus 142 ~~~~n~~ssrsH~v~~i~v~~~~~~~~~~--~~~~s~l~~vDLagse~~~~~~~-~~~~~~e~~~in~sl~~L~~vi~aL 218 (237)
.+.+|..|||||+||+++|.+........ ....|+|+||||||+|+..+... .+.+.+|+..||+||.+|++||.+|
T Consensus 197 ~t~~n~~sSRSH~i~~i~v~~~~~~~~~~~~~~~~s~l~~vDLaGsE~~~~~~~~~~~~~~e~~~in~Sl~~L~~vi~~L 276 (335)
T PF00225_consen 197 STKMNARSSRSHAIFTIHVEQKDRDPSDDEESVKHSRLTFVDLAGSERLKKSGASDGQRLKESSNINKSLSALGNVIRAL 276 (335)
T ss_dssp SSSCTHHGGGSEEEEEEEEEEEETTTTTEEEEEEEEEEEEEEEEESTGGCGCSSSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccceeecceeeeecccccccccccccccccccccceecchhhhhhhhHhhh
Confidence 99999999999999999999998544432 35789999999999999988876 4788999999999999999999999
Q ss_pred hcC--CCCCCCCCchhhhhcC
Q psy17371 219 SDH--SAVPPYRNSTLTYLLK 237 (237)
Q Consensus 219 ~~~--~~~vpyrdSkLT~lLq 237 (237)
+.+ ..|+||||||||+|||
T Consensus 277 ~~~~~~~~vpyr~SkLT~lL~ 297 (335)
T PF00225_consen 277 AQGSKQSHVPYRDSKLTRLLK 297 (335)
T ss_dssp HCTTSTSSSCGGGSHHHHHTG
T ss_pred hccccchhhhhhcccccceec
Confidence 999 7899999999999997
No 24
>KOG0247|consensus
Probab=100.00 E-value=1.1e-51 Score=368.40 Aligned_cols=226 Identities=35% Similarity=0.526 Sum_probs=200.1
Q ss_pred CcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCC
Q psy17371 6 NPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS 72 (237)
Q Consensus 6 ~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~ 72 (237)
...|.+||...-.+ +|+.++.|+|... |.+||||||||+|+. .++||+||++.-||..+.+
T Consensus 82 ~fsFt~VF~p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~------~~~GIlPR~Ld~iF~siq~ 155 (809)
T KOG0247|consen 82 KFSFTKVFGPSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTP------DRPGILPRALDVIFNSIQG 155 (809)
T ss_pred EeeeeeecCCCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCC------CCCCchHHHHHHHHHHhhc
Confidence 35678888555544 8888888877665 888999999999998 8899999999999987755
Q ss_pred C-------------------------------------------------------------------ceEEEEEEEEEE
Q psy17371 73 N-------------------------------------------------------------------MVAQVKISYLEI 85 (237)
Q Consensus 73 ~-------------------------------------------------------------------~~~~v~vS~~EI 85 (237)
. ..|.|+|||+||
T Consensus 156 ~~~~k~~~kp~~s~~~e~~~~~~alL~lkr~~~~nd~~~ts~~~~~~~~e~~e~~~~~e~~~~~l~~d~~ysV~VSf~EI 235 (809)
T KOG0247|consen 156 RQAKKPVFKPLRSNLFEIKAEEDALLQLKREAMLNDRKSTSKAHRQSTPEYAEHIHVIEQPALELDEDIVYSVFVSFVEI 235 (809)
T ss_pred eeccCceeccccchHHHHHHHHHHHHhhhhhhccccccCcchhhccccHHHHhhcchhcccccccCcCcEEEEEeeHHHH
Confidence 2 346799999999
Q ss_pred eccccccccccc------cccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCCCceEEEEEE
Q psy17371 86 YNEFVYDLLSSE------RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQ 159 (237)
Q Consensus 86 y~e~v~DLL~~~------~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssrsH~v~~i~ 159 (237)
|||-|||||.+. .+...+++|.++.++|+|++++.|+|.+|++++|+.|.++|+.++|..|..|||||+||+|.
T Consensus 236 YN~~iYDLLe~~s~q~~~~~~~ll~~d~~~~~~Vkgl~~V~VssseEA~~l~~lGqk~r~~asT~lN~~SSRSHsVFtIk 315 (809)
T KOG0247|consen 236 YNNYIYDLLEDASFQGKLQKLKLLREDTNGNMYVKGLTEVEVSSSEEALELFQLGQKRRRVASTKLNANSSRSHSVFTIK 315 (809)
T ss_pred HHHHHHHhhccccccchhhhhhhhhhccCCCeeeccccEEEeccHHHHHHHHHHHHhhhhhhheeccccccccceeEEEE
Confidence 999999999865 22367788999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCC-----CCCCCCCchhhh
Q psy17371 160 LTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHS-----AVPPYRNSTLTY 234 (237)
Q Consensus 160 v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~-----~~vpyrdSkLT~ 234 (237)
+.+............|.|.|||||||||...+++.|.+++|+.+||.||.+|++||.+|..++ ++|||||||||+
T Consensus 316 l~q~~~~~~s~~i~vSqlsLvDLAGSERt~rtq~sG~RLrEagNINtSLmTLg~Cie~LR~nqk~ks~~~VPyRdSKLTh 395 (809)
T KOG0247|consen 316 LVQAPRSQDSNQITVSQLSLVDLAGSERTNRTQNSGERLREAGNINTSLMTLRRCIDVLRENQKSKSQKIVPYRDSKLTH 395 (809)
T ss_pred eeecccccccCceeEEeeeeeecccchhcccccchhHHHHhhccccHHHHHHHHHHHHHHHHhhhhccccCcchHHHHHH
Confidence 999875544445789999999999999999999999999999999999999999999998765 599999999999
Q ss_pred hcC
Q psy17371 235 LLK 237 (237)
Q Consensus 235 lLq 237 (237)
++|
T Consensus 396 lfq 398 (809)
T KOG0247|consen 396 LFK 398 (809)
T ss_pred HHH
Confidence 875
No 25
>KOG0246|consensus
Probab=100.00 E-value=1.3e-48 Score=340.47 Aligned_cols=225 Identities=31% Similarity=0.432 Sum_probs=197.2
Q ss_pred cccchhhhhhh--hHHHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCCC
Q psy17371 7 PLQSHIEESLA--TLRYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSN 73 (237)
Q Consensus 7 ~~~~~~~~~~~--~~~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~~ 73 (237)
-+||+.|.... -.||..+++|+|..+ ||+||||||||-|......-....||+.++.+|+|..+...
T Consensus 260 F~FDyaFDe~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggdfsgk~q~~s~giya~aa~Dvf~~L~~p 339 (676)
T KOG0246|consen 260 FRFDYAFDESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGDFSGKAQDCSKGIYALAARDVFRLLRQP 339 (676)
T ss_pred EEEeeecccccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccccCcccccccccchhhhhhHHHHHhccc
Confidence 47899996665 449999999977655 88888888888666533322356799999999999998763
Q ss_pred ----ceEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCC
Q psy17371 74 ----MVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKS 149 (237)
Q Consensus 74 ----~~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~s 149 (237)
..+.|++||+|||+.+|||||++ ++.+.+.||.+..++|.||.+..|.+.+|++++|+.|+..|+.+.|..|..|
T Consensus 340 ~Y~~~~l~v~~tFFEIYgGKvfDLL~~-k~KLrvLEDg~QQVqVVGLqE~~v~~~eeVl~lIe~Gns~RtsG~TsANs~S 418 (676)
T KOG0246|consen 340 TYRKLDLKVYVTFFEIYGGKVYDLLND-KKKLRVLEDGNQQVQVVGLQEEEVSGVEEVLELIEKGNSCRTSGQTSANSNS 418 (676)
T ss_pred chhhcceEEEEEEEEEeCcchhhhhcc-ccceEEeecCCceEEEeeceeeeccCHHHHHHHHHhcccccccCcccCcccc
Confidence 67899999999999999999998 7889999999999999999999999999999999999999999999999999
Q ss_pred CCceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcC-chhHHHHHHHHHhHHHHHHHHHHHHhhcCCCCCCCC
Q psy17371 150 SRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTK-ATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYR 228 (237)
Q Consensus 150 srsH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~-~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~vpyr 228 (237)
||||+||+|.+..... ...++++.||||||+||...+. +..+...||..|||||.||..||+||..++.|+|||
T Consensus 419 SRSHAvfQIilr~~~~-----~k~hGKfSlIDLAGnERGaDts~adRqtRlEGAEINKSLLALKECIRaLg~nk~H~PFR 493 (676)
T KOG0246|consen 419 SRSHAVFQIILRKHGE-----FKLHGKFSLIDLAGNERGADTSSADRQTRLEGAEINKSLLALKECIRALGRNKSHLPFR 493 (676)
T ss_pred cccceeEeeeeecCCc-----ceeEeEEEEEEccCCccCCcccccchhhhhhhhhhhHHHHHHHHHHHHhcCCCCCCCch
Confidence 9999999999875432 2568999999999999987765 455566699999999999999999999999999999
Q ss_pred CchhhhhcC
Q psy17371 229 NSTLTYLLK 237 (237)
Q Consensus 229 dSkLT~lLq 237 (237)
.||||++||
T Consensus 494 ~SKLTqVLR 502 (676)
T KOG0246|consen 494 GSKLTQVLR 502 (676)
T ss_pred hhhHHHHHH
Confidence 999999996
No 26
>KOG0241|consensus
Probab=100.00 E-value=1.2e-49 Score=360.90 Aligned_cols=224 Identities=45% Similarity=0.640 Sum_probs=194.4
Q ss_pred ccchhhhhhhhHHHH--HHhhh-hhhhcCcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCCC----ceEEEEE
Q psy17371 8 LQSHIEESLATLRYA--LQARN-IFEKIGTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSN----MVAQVKI 80 (237)
Q Consensus 8 ~~~~~~~~~~~~~y~--~~~~~-i~~~~G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~~----~~~~v~v 80 (237)
.|+.||+|.++.+-+ ..+.+ ||-+|||+||||+|+|+|.. +++|||||.+..||+++... ..|+|.|
T Consensus 73 gQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~------~QpGiIPrlc~~lFe~I~k~~n~~~tfkVeV 146 (1714)
T KOG0241|consen 73 GQETVFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTA------EQPGIIPRLCESLFERIDKESNPSQTFKVEV 146 (1714)
T ss_pred cchhHHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccC------CCCCchhHHHHHHHHHHHhccCCCceEEEEE
Confidence 455666666544222 12222 33445888888888888877 99999999999999998644 7899999
Q ss_pred EEEEEeccccccccccc--cccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCCCceEEEEE
Q psy17371 81 SYLEIYNEFVYDLLSSE--RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQI 158 (237)
Q Consensus 81 S~~EIy~e~v~DLL~~~--~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssrsH~v~~i 158 (237)
||+|||||+++|||.|+ +..+++++++-.|.++.||++..|.|++|+-.++..|++.|+...+.+|..|+|||+||.+
T Consensus 147 SymEIynEkv~DLLdPk~ssqtlkVrehsvlGp~vdGLS~laV~S~qdId~lm~egnKsrtvaatnmn~EssrsHaVFsl 226 (1714)
T KOG0241|consen 147 SYMEIYNEKVRDLLDPKGSSQTLKVREHSVLGPYVDGLSQLAVTSFQDIDSLMSEGNKSRTVAATNMNEESSRSHAVFSL 226 (1714)
T ss_pred EHHHHhhcchhhhhCCCCCcceeEEeecccccccccchhhhhcccHHHHHHHHHhccccceeeeecccccccccceeEEE
Confidence 99999999999999987 6779999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEe--cCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCC------CCCCCCCc
Q psy17371 159 QLTLTE--DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHS------AVPPYRNS 230 (237)
Q Consensus 159 ~v~~~~--~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~------~~vpyrdS 230 (237)
.|++.- ...+....+.|+|.+|||||+||+.+++..|.+++|+.+||+||++|+.||.||++++ ++||||||
T Consensus 227 vvtQ~l~D~ktg~SgeKvsklslVDLAgserasktga~g~rlkegsNinkSLttLglVIsaLadq~n~kgkdKfvPYrDS 306 (1714)
T KOG0241|consen 227 VVTQTLYDLKTGHSGEKVSKLSLVDLAGSERASKTGAAGSRLKEGSNINKSLTTLGLVISALADQKNGKGKDKFVPYRDS 306 (1714)
T ss_pred EEeeEEeccccCcchhheeeeeEEEeccccccccccchhhhhhhcCCcchhhHHHHHHHHHHHHhhcCCCccccccchhH
Confidence 999864 4444444789999999999999999999999999999999999999999999998754 59999999
Q ss_pred hhhhhcC
Q psy17371 231 TLTYLLK 237 (237)
Q Consensus 231 kLT~lLq 237 (237)
.||+|||
T Consensus 307 VLTwLLk 313 (1714)
T KOG0241|consen 307 VLTWLLK 313 (1714)
T ss_pred HHHHHHH
Confidence 9999997
No 27
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=100.00 E-value=6.8e-43 Score=318.66 Aligned_cols=231 Identities=42% Similarity=0.577 Sum_probs=205.1
Q ss_pred cCcccchhhhhhhhH--HHHHHhhhhhhhc--CcceeeeEeeeecCCCCCCC---CCCccccchhHHHhhccCCCC---c
Q psy17371 5 INPLQSHIEESLATL--RYALQARNIFEKI--GTNEFVFHFSMMGDNLDSSL---KETTGIIPRFCHQLFDQIPSN---M 74 (237)
Q Consensus 5 ~~~~~~~~~~~~~~~--~y~~~~~~i~~~~--G~~~sgktyt~~G~~~~~~~---~~~~Gii~r~~~~Lf~~~~~~---~ 74 (237)
..++||.||...+.+ +|+..++++++.+ |+|+|.++|+++|+||++++ .+++||||+++.+||+.++.. .
T Consensus 56 ~~~~fdkvf~~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gii~~~l~~lf~~l~~~~~~~ 135 (568)
T COG5059 56 GTYAFDKVFGPSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGIIPLSLKELFSKLEDLSMTK 135 (568)
T ss_pred eEEEEeeccCCCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccchHHHHHHHHHHHHHhcccCc
Confidence 457899999776655 9999999988877 66666666666666666655 368999999999999988655 5
Q ss_pred eEEEEEEEEEEeccccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCCCceE
Q psy17371 75 VAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHS 154 (237)
Q Consensus 75 ~~~v~vS~~EIy~e~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssrsH~ 154 (237)
.+.|.+||+|||+|+++|||.+....+.++++...++.+.++++..+.+.+|++.+|.++..+|+...+.+|..|+|+|+
T Consensus 136 ~~~v~is~lEiYnEk~~DLl~~~~~~~~~~~~~~~~v~v~~l~~~~~~s~ee~l~~l~~~~~nr~~~~te~n~~ssRshs 215 (568)
T COG5059 136 DFAVSISYLEIYNEKIYDLLSPNEESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHS 215 (568)
T ss_pred ceeeEeehhHHHhhHHHhhccCccccccccccCCCceEeecceEEecCChHHHHHHHHHhhhhcccccchhccccccceE
Confidence 79999999999999999999987666889999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhc--CCCCCCCCCchh
Q psy17371 155 IFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSD--HSAVPPYRNSTL 232 (237)
Q Consensus 155 v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~--~~~~vpyrdSkL 232 (237)
+|++.+.+........ ..+++.+|||||+|+....+..+.+++|+..||+||.+|++||.+|.. +..|||||+|||
T Consensus 216 i~~i~~~~~~~~~~~~--~~~~l~lvDLagSE~~~~~~~~~~r~~E~~~iN~sLl~Lg~vI~~L~~~~~~~~ipyReskL 293 (568)
T COG5059 216 IFQIELASKNKVSGTS--ETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINALGDKKKSGHIPYRESKL 293 (568)
T ss_pred EEEEEEEEeccCccce--ecceEEEEeeccccccchhhcccchhhhhhhhHhhHHHHHHHHHHHhccccCCccchhhhHH
Confidence 9999999988655553 337899999999999999989999999999999999999999999997 667999999999
Q ss_pred hhhcC
Q psy17371 233 TYLLK 237 (237)
Q Consensus 233 T~lLq 237 (237)
||+||
T Consensus 294 TRlLq 298 (568)
T COG5059 294 TRLLQ 298 (568)
T ss_pred HHHHH
Confidence 99996
No 28
>KOG0244|consensus
Probab=100.00 E-value=1.3e-43 Score=324.77 Aligned_cols=229 Identities=38% Similarity=0.550 Sum_probs=196.6
Q ss_pred cCcccchhhhhhhhH--HHHHHhhhhhhhc-----------CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCC
Q psy17371 5 INPLQSHIEESLATL--RYALQARNIFEKI-----------GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIP 71 (237)
Q Consensus 5 ~~~~~~~~~~~~~~~--~y~~~~~~i~~~~-----------G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~ 71 (237)
-..++|++|....++ +|+..+.++++.+ |++|+||||||-+..... ..+.|+|||+++.+|..+.
T Consensus 32 ~s~t~d~v~~~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~~~~~--~~~~Gvipr~v~~~f~~i~ 109 (913)
T KOG0244|consen 32 ASFTYDKVFLDLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTNDAPA--QDTVGVIPRAVSTLFTRIG 109 (913)
T ss_pred cceeeeeeccCchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccccccc--cccCCcCcchHHHHHHHHH
Confidence 356789999888766 9999999965544 777777777775553111 1236999999999999997
Q ss_pred CC--ceEEEEEEEEEEeccccccccccc--cccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCC
Q psy17371 72 SN--MVAQVKISYLEIYNEFVYDLLSSE--RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMND 147 (237)
Q Consensus 72 ~~--~~~~v~vS~~EIy~e~v~DLL~~~--~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~ 147 (237)
+. ..+.|.++|+|||+|.|+|||.|. ...+.+++ +.+++.+.|+++..|.+..+..+.+..|...|+..++.+|.
T Consensus 110 ~~~~~~f~i~vs~vely~e~v~dl~~~~~~~~~i~~~e-~~g~it~~glte~tv~~~~q~~~~L~~g~~~RtvasTnMN~ 188 (913)
T KOG0244|consen 110 KTESFVFRITVSFVELYNEEVLDLLKPSRLKANIKLRE-PKGEITIRGLTEKTVRMKLQLLSRLEKGSLERTVASTNMNA 188 (913)
T ss_pred hhhccceeeeeeeeeccchhhhhhcChhhhhhceeccc-cCCceEEEeehHHHHHHHHHHHHHHHhchHHHHHHHHhcch
Confidence 65 458999999999999999999965 44466777 78889999999999999999999999999999999999999
Q ss_pred CCCCceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCCC--CC
Q psy17371 148 KSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSA--VP 225 (237)
Q Consensus 148 ~ssrsH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~--~v 225 (237)
.|||||++|++.+.+........ ...++|+||||||+||.+++.+.|.+++|+.+||.+|++|++||.||.+.++ ||
T Consensus 189 qssRshAifti~lkq~kk~~~~s-~~~sKlhlVDLAGSER~kkT~a~gdrlKEgInIN~gLL~LgnVIsaLg~~kk~~~v 267 (913)
T KOG0244|consen 189 QSSRSHAIFTITLKQRKKLSKRS-SFCSKLHLVDLAGSERVKKTKAEGDRLKEGININGGLLALGNVISALGEAKKGGEV 267 (913)
T ss_pred hhhhhhHHHHHHHHHHHHhhccc-hhhhhhheeeccccccccccccchhhhhhccCcchHHHHHHHHHHHHHhhhcCCcc
Confidence 99999999999999865222221 4579999999999999999999999999999999999999999999999887 99
Q ss_pred CCCCchhhhhcC
Q psy17371 226 PYRNSTLTYLLK 237 (237)
Q Consensus 226 pyrdSkLT~lLq 237 (237)
||||||||||||
T Consensus 268 pyRdSkltrlLQ 279 (913)
T KOG0244|consen 268 PYRDSKLTRLLQ 279 (913)
T ss_pred cchHHHHHHHHH
Confidence 999999999997
No 29
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=100.00 E-value=2.4e-38 Score=252.48 Aligned_cols=158 Identities=39% Similarity=0.540 Sum_probs=136.7
Q ss_pred hhhhhhhHHHHH--Hhhh-hhhhcCcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCCCceEEEEEEEEEEecc
Q psy17371 12 IEESLATLRYAL--QARN-IFEKIGTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSNMVAQVKISYLEIYNE 88 (237)
Q Consensus 12 ~~~~~~~~~y~~--~~~~-i~~~~G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~~~~~~v~vS~~EIy~e 88 (237)
+|+...+. +.. .+.+ ++-.||++||||||||+|+. +++||+||++++
T Consensus 8 vf~~~~~~-v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~------~~~Giip~~~~~----------------------- 57 (186)
T cd01363 8 VFRDVGPL-LQSALDGYNVCIFAYGQTGSGKTYTMEGKR------EGAGIIPRTVTD----------------------- 57 (186)
T ss_pred HHHHHHHH-HHHHhCCcceeEEEECCCCCcceEecCCCC------CCCCcchHHHHH-----------------------
Confidence 66666633 222 2222 34446999999999999998 889999999998
Q ss_pred ccccccccccccceeeecCCCCeeecCcEEEEecCHHHHHHHHHHHHhhCccccCCCCCCCCCceEEEEEEEEEEecCC-
Q psy17371 89 FVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTG- 167 (237)
Q Consensus 89 ~v~DLL~~~~~~~~i~~~~~~~~~i~~l~~~~v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssrsH~v~~i~v~~~~~~~- 167 (237)
++++++.+.++|....+.+|..|||+|+||+|++.+.....
T Consensus 58 --------------------------------------~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~~~~~~~~ 99 (186)
T cd01363 58 --------------------------------------VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALAS 99 (186)
T ss_pred --------------------------------------HHHHHhhccccccccccCCCCccCcccEEEEEEEEEeecCCC
Confidence 88899999999999999999999999999999999887332
Q ss_pred CceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHHHHHHHhhcCCCCCCCCCchhhhhcC
Q psy17371 168 SSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237 (237)
Q Consensus 168 ~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~~vi~aL~~~~~~vpyrdSkLT~lLq 237 (237)
.......|+|+||||||+|+....+..+.+++|++.||+||.+|++||.+|+++++||||||||||+|||
T Consensus 100 ~~~~~~~s~l~lVDLAGsE~~~~~~~~~~~~~e~~~in~sl~~L~~~i~~l~~~~~~vpyr~SkLT~lL~ 169 (186)
T cd01363 100 ATEQPKVGKINLVDLAGSERIDFSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQ 169 (186)
T ss_pred CccceeeeeEEEEEccccccccccCCchhhHHHHHHHhhHHHHHHHHHHHHhcCCCCCCCcccHHHHHHH
Confidence 2334678999999999999999999999999999999999999999999999999999999999999996
No 30
>KOG4280|consensus
Probab=97.31 E-value=8.4e-05 Score=67.95 Aligned_cols=43 Identities=12% Similarity=0.110 Sum_probs=32.6
Q ss_pred cCcccchhhhhhhhHHHHH--Hhhh-hhhhcCcceeeeEeeeecCC
Q psy17371 5 INPLQSHIEESLATLRYAL--QARN-IFEKIGTNEFVFHFSMMGDN 47 (237)
Q Consensus 5 ~~~~~~~~~~~~~~~~y~~--~~~~-i~~~~G~~~sgktyt~~G~~ 47 (237)
-+++|+.||..+...+-+. .|.+ .+-+|||+|+||||||.|+.
T Consensus 62 ~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~ 107 (574)
T KOG4280|consen 62 SDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPD 107 (574)
T ss_pred CCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCC
Confidence 4689999998887553333 3334 45559999999999999994
No 31
>KOG0242|consensus
Probab=97.07 E-value=0.0002 Score=67.48 Aligned_cols=44 Identities=18% Similarity=0.117 Sum_probs=30.3
Q ss_pred cCcccchhhhhhh-hH-HHHHHhhh-hhhhcCcceeeeEeeeecCCC
Q psy17371 5 INPLQSHIEESLA-TL-RYALQARN-IFEKIGTNEFVFHFSMMGDNL 48 (237)
Q Consensus 5 ~~~~~~~~~~~~~-~~-~y~~~~~~-i~~~~G~~~sgktyt~~G~~~ 48 (237)
..|+|..||+... ++ .-...|.+ .|=+||++||||||||.|...
T Consensus 63 ~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~ 109 (675)
T KOG0242|consen 63 EESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSED 109 (675)
T ss_pred CCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCC
Confidence 3567888887744 44 22223333 344599999999999999963
No 32
>KOG0240|consensus
Probab=96.43 E-value=0.0014 Score=59.30 Aligned_cols=49 Identities=18% Similarity=0.018 Sum_probs=36.3
Q ss_pred ccCcccchhhhhhhhHHHHHH--hhh-hhhhcCcceeeeEeeeecCCCCCCC
Q psy17371 4 TINPLQSHIEESLATLRYALQ--ARN-IFEKIGTNEFVFHFSMMGDNLDSSL 52 (237)
Q Consensus 4 ~~~~~~~~~~~~~~~~~y~~~--~~~-i~~~~G~~~sgktyt~~G~~~~~~~ 52 (237)
+-+++|..||+..+..+-+.. |.. .+-+||++++||||||.|.+.+...
T Consensus 58 ~pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~~~ 109 (607)
T KOG0240|consen 58 SPNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDPEE 109 (607)
T ss_pred CCCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCChhh
Confidence 457899999988886543332 222 4556999999999999999975433
No 33
>KOG0245|consensus
Probab=96.32 E-value=0.0013 Score=63.11 Aligned_cols=43 Identities=21% Similarity=0.154 Sum_probs=33.2
Q ss_pred cCcccchhhhhhhhH--HHHHHhhh-hhhhcCcceeeeEeeeecCC
Q psy17371 5 INPLQSHIEESLATL--RYALQARN-IFEKIGTNEFVFHFSMMGDN 47 (237)
Q Consensus 5 ~~~~~~~~~~~~~~~--~y~~~~~~-i~~~~G~~~sgktyt~~G~~ 47 (237)
-=++|..||+..+-. .-+..|.+ ++=+|||+||||+|||+|-.
T Consensus 64 hfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTMMG~~ 109 (1221)
T KOG0245|consen 64 HFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTMMGFQ 109 (1221)
T ss_pred chhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceeeeccC
Confidence 347899999998855 33445555 34459999999999999987
No 34
>KOG0239|consensus
Probab=95.49 E-value=0.011 Score=55.92 Aligned_cols=48 Identities=13% Similarity=0.179 Sum_probs=37.5
Q ss_pred cccchhhhhhhhH--HHHHHhhhhhhhc--CcceeeeEeeeecCCCCCCCCCC
Q psy17371 7 PLQSHIEESLATL--RYALQARNIFEKI--GTNEFVFHFSMMGDNLDSSLKET 55 (237)
Q Consensus 7 ~~~~~~~~~~~~~--~y~~~~~~i~~~~--G~~~sgktyt~~G~~~~~~~~~~ 55 (237)
..||+||.-.+.+ ||... .+++.++ |+|-|+++|+++|+||++++...
T Consensus 362 f~fdkVf~p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~ 413 (670)
T KOG0239|consen 362 FKFDKVFGPLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGP 413 (670)
T ss_pred ceeeeecCCcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCC
Confidence 5689999888776 77753 4444433 99999999999999999988543
No 35
>KOG0241|consensus
Probab=94.15 E-value=0.027 Score=54.15 Aligned_cols=50 Identities=20% Similarity=0.364 Sum_probs=38.7
Q ss_pred HHHHHhhhhhhhc--CcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccC
Q psy17371 20 RYALQARNIFEKI--GTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQI 70 (237)
Q Consensus 20 ~y~~~~~~i~~~~--G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~ 70 (237)
||...+..|++.. |+|+|+++|++.|+||++++...+|= |=++-.|-+.+
T Consensus 77 Vf~~lG~~il~naf~GyNaCifaYGQtGsGKsYsmmGt~~Q-pGiIPrlc~~l 128 (1714)
T KOG0241|consen 77 VFKCLGEGILENAFQGYNACIFAYGQTGSGKSYSMMGTAEQ-PGIIPRLCESL 128 (1714)
T ss_pred HHHhcchHHHHHHhhccceeeEEecccCCCceeEeeccCCC-CCchhHHHHHH
Confidence 8888888877666 99999999999999999988777765 44444444433
No 36
>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]
Probab=91.09 E-value=0.053 Score=50.59 Aligned_cols=81 Identities=42% Similarity=0.566 Sum_probs=66.4
Q ss_pred HHHhhCccccCCCCCCCCCceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCcCCcCchhHHHHHHHHHhHHHHHHH
Q psy17371 133 EGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLG 212 (237)
Q Consensus 133 ~~~~~R~~~~~~~n~~ssrsH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~~~~~~~~~~~~e~~~in~sl~~L~ 212 (237)
.+...+....+..|..++++|+.|.............. . +..+|||++|+. .+..-+..+++...+|++|..++
T Consensus 486 ~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~----~-~n~~~~~~~e~~-~s~~~~~~l~~~~~~~k~l~~~~ 559 (568)
T COG5059 486 KASKLRSSASTKLNLRSSRSHSKFRDHLNGSNSSTKEL----S-LNQVDLAGSERK-VSQSVGELLRETQSLNKSLSSLG 559 (568)
T ss_pred hhccchhhcccchhhhhcccchhhhhcccchhhhhHHH----H-hhhhhccccccc-hhhhhHHHHHhhHhhhhccccch
Confidence 56677778888899999999999977766554322221 1 789999999999 88899999999999999999999
Q ss_pred HHHHHhh
Q psy17371 213 QVITNLS 219 (237)
Q Consensus 213 ~vi~aL~ 219 (237)
.++.++.
T Consensus 560 d~~~~~~ 566 (568)
T COG5059 560 DVIHALG 566 (568)
T ss_pred hhhhhcc
Confidence 9998764
No 37
>KOG0244|consensus
Probab=88.20 E-value=0.29 Score=47.26 Aligned_cols=8 Identities=0% Similarity=0.169 Sum_probs=3.6
Q ss_pred eEEEEEEE
Q psy17371 153 HSIFQIQL 160 (237)
Q Consensus 153 H~v~~i~v 160 (237)
|+++.-.+
T Consensus 287 ~tlmiaCi 294 (913)
T KOG0244|consen 287 DTLMIACI 294 (913)
T ss_pred ceeeeeec
Confidence 44444443
No 38
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=76.36 E-value=0.94 Score=41.61 Aligned_cols=57 Identities=14% Similarity=0.198 Sum_probs=33.2
Q ss_pred CcceeeeEeeeecCC----CCC-CCCCCccccchhHHHhhccCCCCceEEEEEEEEEEecccc
Q psy17371 33 GTNEFVFHFSMMGDN----LDS-SLKETTGIIPRFCHQLFDQIPSNMVAQVKISYLEIYNEFV 90 (237)
Q Consensus 33 G~~~sgktyt~~G~~----~~~-~~~~~~Gii~r~~~~Lf~~~~~~~~~~v~vS~~EIy~e~v 90 (237)
|.+||||||||-.-= +.. -+.++.-|.-+..++ |+..-.+..+...|||+.-|+-+-
T Consensus 39 GvTGSGKTfT~AnVI~~~~rPtLV~AhNKTLAaQLy~E-fk~fFP~NaVEYFVSYYDYYQPEA 100 (663)
T COG0556 39 GVTGSGKTFTMANVIAKVQRPTLVLAHNKTLAAQLYSE-FKEFFPENAVEYFVSYYDYYQPEA 100 (663)
T ss_pred eeccCCchhHHHHHHHHhCCCeEEEecchhHHHHHHHH-HHHhCcCcceEEEeeeccccCccc
Confidence 999999999984321 111 113444444333333 222223356778999999986553
No 39
>KOG0243|consensus
Probab=70.96 E-value=2.1 Score=42.29 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=17.0
Q ss_pred eeeeEeeeecCCCCCCCCC
Q psy17371 36 EFVFHFSMMGDNLDSSLKE 54 (237)
Q Consensus 36 ~sgktyt~~G~~~~~~~~~ 54 (237)
+|+++||++|+||+++|..
T Consensus 130 CTIFAYGQTGTGKTyTMeG 148 (1041)
T KOG0243|consen 130 CTIFAYGQTGTGKTYTMEG 148 (1041)
T ss_pred ceEEEecCCCCCceeeeec
Confidence 6889999999999999954
No 40
>KOG0246|consensus
Probab=62.03 E-value=3.3 Score=38.33 Aligned_cols=16 Identities=13% Similarity=0.328 Sum_probs=7.0
Q ss_pred eeeEeeeecCCCCCCC
Q psy17371 37 FVFHFSMMGDNLDSSL 52 (237)
Q Consensus 37 sgktyt~~G~~~~~~~ 52 (237)
|+++|+++|+||++++
T Consensus 294 TCFAYGQTGSGKT~TM 309 (676)
T KOG0246|consen 294 TCFAYGQTGSGKTYTM 309 (676)
T ss_pred eeeeeccCCCCceeec
Confidence 3344444444444444
No 41
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=59.01 E-value=1.5 Score=32.49 Aligned_cols=10 Identities=20% Similarity=0.043 Sum_probs=9.0
Q ss_pred CcceeeeEee
Q psy17371 33 GTNEFVFHFS 42 (237)
Q Consensus 33 G~~~sgktyt 42 (237)
|.+|+||+|.
T Consensus 60 G~tGtGKn~v 69 (127)
T PF06309_consen 60 GWTGTGKNFV 69 (127)
T ss_pred cCCCCcHHHH
Confidence 9999999985
No 42
>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup. Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second
Probab=57.75 E-value=5.5 Score=34.65 Aligned_cols=43 Identities=9% Similarity=0.196 Sum_probs=29.5
Q ss_pred hhhhhhhHHHHHHhhhhhhhcCcc----------eeeeEeeeecCCCCCCCCC
Q psy17371 12 IEESLATLRYALQARNIFEKIGTN----------EFVFHFSMMGDNLDSSLKE 54 (237)
Q Consensus 12 ~~~~~~~~~y~~~~~~i~~~~G~~----------~sgktyt~~G~~~~~~~~~ 54 (237)
.|..+..+-.+.+..++|+.++.. +++++||+.|+||++++..
T Consensus 42 ~f~FD~vf~~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G 94 (337)
T cd01373 42 MFTFDHVADSNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMG 94 (337)
T ss_pred EEeCCeEeCCCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecC
Confidence 343333333345566688877755 7788999999999998844
No 43
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=56.13 E-value=6.7 Score=30.88 Aligned_cols=35 Identities=11% Similarity=0.284 Sum_probs=30.1
Q ss_pred HHHHHhhhhhhhc--CcceeeeEeeeecCCCCCCCCCC
Q psy17371 20 RYALQARNIFEKI--GTNEFVFHFSMMGDNLDSSLKET 55 (237)
Q Consensus 20 ~y~~~~~~i~~~~--G~~~sgktyt~~G~~~~~~~~~~ 55 (237)
+|+..+ ++++.+ |++++.++|+..|+||++++...
T Consensus 8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~ 44 (186)
T cd01363 8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGK 44 (186)
T ss_pred HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCC
Confidence 788888 877777 99999999999999999876554
No 44
>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group. KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo
Probab=53.96 E-value=6.7 Score=33.87 Aligned_cols=21 Identities=10% Similarity=0.203 Sum_probs=16.4
Q ss_pred eeeeEeeeecCCCCCCCCCCc
Q psy17371 36 EFVFHFSMMGDNLDSSLKETT 56 (237)
Q Consensus 36 ~sgktyt~~G~~~~~~~~~~~ 56 (237)
++.++||..|+||++++....
T Consensus 86 ~~i~ayGqtGSGKTyTm~G~~ 106 (322)
T cd01367 86 ATCFAYGQTGSGKTYTMLGDE 106 (322)
T ss_pred eEEEeccCCCCCCceEecCcC
Confidence 456789999999998876655
No 45
>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup. Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a
Probab=52.37 E-value=6.6 Score=34.30 Aligned_cols=44 Identities=7% Similarity=0.137 Sum_probs=26.0
Q ss_pred hhhhhhhHHHHHHhhhhhhhcCcc----------eeeeEeeeecCCCCCCCCCC
Q psy17371 12 IEESLATLRYALQARNIFEKIGTN----------EFVFHFSMMGDNLDSSLKET 55 (237)
Q Consensus 12 ~~~~~~~~~y~~~~~~i~~~~G~~----------~sgktyt~~G~~~~~~~~~~ 55 (237)
.|..+..+-.+.+..++|+..+.. +++++||..|+||++++...
T Consensus 56 ~f~Fd~vf~~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~ 109 (345)
T cd01368 56 KFSFSKVFGPNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGS 109 (345)
T ss_pred EeecCeEECCCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCC
Confidence 333333333344555566665544 46678888888888877554
No 46
>PRK05642 DNA replication initiation factor; Validated
Probab=50.04 E-value=4.6 Score=33.13 Aligned_cols=12 Identities=0% Similarity=-0.208 Sum_probs=8.2
Q ss_pred cCcccchhhhhh
Q psy17371 5 INPLQSHIEESL 16 (237)
Q Consensus 5 ~~~~~~~~~~~~ 16 (237)
-.++||++....
T Consensus 14 ~~~tfdnF~~~~ 25 (234)
T PRK05642 14 DDATFANYYPGA 25 (234)
T ss_pred CcccccccCcCC
Confidence 357888888543
No 47
>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup. The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec
Probab=48.91 E-value=7.1 Score=33.98 Aligned_cols=45 Identities=11% Similarity=0.125 Sum_probs=26.6
Q ss_pred hhhhhhhHHHHHHhhhhhhhcCcc----------eeeeEeeeecCCCCCCCCCCc
Q psy17371 12 IEESLATLRYALQARNIFEKIGTN----------EFVFHFSMMGDNLDSSLKETT 56 (237)
Q Consensus 12 ~~~~~~~~~y~~~~~~i~~~~G~~----------~sgktyt~~G~~~~~~~~~~~ 56 (237)
.|..+..+--+....++|+..+.. ++.++||..|+||++++....
T Consensus 55 ~f~Fd~vf~~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~ 109 (338)
T cd01370 55 KYSFDRVFDETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTD 109 (338)
T ss_pred EEEeccccCCCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCC
Confidence 344333332333455577766533 466788888888888775543
No 48
>PRK06893 DNA replication initiation factor; Validated
Probab=47.80 E-value=8.9 Score=31.28 Aligned_cols=15 Identities=0% Similarity=-0.188 Sum_probs=9.5
Q ss_pred cccCcccchhhhhhh
Q psy17371 3 ATINPLQSHIEESLA 17 (237)
Q Consensus 3 ~~~~~~~~~~~~~~~ 17 (237)
.+-.+++|.++....
T Consensus 9 ~~~~~~fd~f~~~~~ 23 (229)
T PRK06893 9 QIDDETLDNFYADNN 23 (229)
T ss_pred CCCcccccccccCCh
Confidence 345677888885443
No 49
>PLN03188 kinesin-12 family protein; Provisional
Probab=47.31 E-value=8.4 Score=39.08 Aligned_cols=12 Identities=17% Similarity=0.149 Sum_probs=8.4
Q ss_pred Ccccchhhhhhh
Q psy17371 6 NPLQSHIEESLA 17 (237)
Q Consensus 6 ~~~~~~~~~~~~ 17 (237)
+++|+.||+.+.
T Consensus 143 ~aTQedVFe~vv 154 (1320)
T PLN03188 143 ESTQEDIFQLVG 154 (1320)
T ss_pred CCCHHHHHHHHH
Confidence 567777777764
No 50
>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins. KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.
Probab=45.32 E-value=11 Score=32.91 Aligned_cols=20 Identities=10% Similarity=0.225 Sum_probs=11.0
Q ss_pred eeeeEeeeecCCCCCCCCCC
Q psy17371 36 EFVFHFSMMGDNLDSSLKET 55 (237)
Q Consensus 36 ~sgktyt~~G~~~~~~~~~~ 55 (237)
+++.+||..|+||++++...
T Consensus 90 ~~i~ayGqtGSGKT~Tm~G~ 109 (356)
T cd01365 90 VCLFAYGQTGSGKSYTMMGY 109 (356)
T ss_pred eEEEEecCCCCCCeEEecCC
Confidence 34456666666666655443
No 51
>KOG1882|consensus
Probab=45.12 E-value=42 Score=27.81 Aligned_cols=40 Identities=18% Similarity=0.299 Sum_probs=30.2
Q ss_pred CCCCCceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCC
Q psy17371 147 DKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSER 187 (237)
Q Consensus 147 ~~ssrsH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~ 187 (237)
...|+-|+|++.........+++. ...=+.+++||..+..
T Consensus 212 pScSKQHaviQyR~v~~~r~dGt~-grrvkpYiiDLgS~Ng 251 (293)
T KOG1882|consen 212 PSCSKQHAVIQYRLVEFTRADGTV-GRRVKPYIIDLGSGNG 251 (293)
T ss_pred ccccccceeeeeeecccccCCCcc-ceeeeeEEEecCCCCc
Confidence 455678999999998877555554 5566789999997654
No 52
>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80
Probab=44.49 E-value=9.8 Score=33.04 Aligned_cols=42 Identities=7% Similarity=0.167 Sum_probs=28.6
Q ss_pred hhhhhhhHHHHHHhhhhhhhcCcc----------eeeeEeeeecCCCCCCCCC
Q psy17371 12 IEESLATLRYALQARNIFEKIGTN----------EFVFHFSMMGDNLDSSLKE 54 (237)
Q Consensus 12 ~~~~~~~~~y~~~~~~i~~~~G~~----------~sgktyt~~G~~~~~~~~~ 54 (237)
.|..+..+-. .+..++|+..+.. +++++||..|+||++++..
T Consensus 49 ~f~FD~vf~~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G 100 (334)
T cd01375 49 SFKFDGVFHN-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTG 100 (334)
T ss_pred EEEcCcccCC-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccC
Confidence 3444444433 4555688877654 4678999999999998844
No 53
>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d
Probab=44.36 E-value=12 Score=32.77 Aligned_cols=45 Identities=4% Similarity=0.101 Sum_probs=29.3
Q ss_pred chhhhhhhhHHHHHHhhhhhhhcCcc----------eeeeEeeeecCCCCCCCCC
Q psy17371 10 SHIEESLATLRYALQARNIFEKIGTN----------EFVFHFSMMGDNLDSSLKE 54 (237)
Q Consensus 10 ~~~~~~~~~~~y~~~~~~i~~~~G~~----------~sgktyt~~G~~~~~~~~~ 54 (237)
...|..+..+-.+.....+|+..+.. ++.++||+.|+||++++..
T Consensus 47 ~~~f~Fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G 101 (352)
T cd01364 47 TKTYTFDKVFGPEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEG 101 (352)
T ss_pred ceeEeccccCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecC
Confidence 34454444433344555677766554 4678999999999998844
No 54
>PRK08084 DNA replication initiation factor; Provisional
Probab=42.56 E-value=11 Score=30.78 Aligned_cols=41 Identities=5% Similarity=-0.147 Sum_probs=20.5
Q ss_pred cccCcccchhhhhhhhHHHHHHhhhhhhh--------cCcceeeeEeeee
Q psy17371 3 ATINPLQSHIEESLATLRYALQARNIFEK--------IGTNEFVFHFSMM 44 (237)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~y~~~~~~i~~~--------~G~~~sgktyt~~ 44 (237)
++-++++|.+........+. ..+.+... +|..|+||||-+.
T Consensus 15 ~~~~~~fd~f~~~~n~~a~~-~l~~~~~~~~~~~l~l~Gp~G~GKThLl~ 63 (235)
T PRK08084 15 LPDDETFASFYPGDNDSLLA-ALQNALRQEHSGYIYLWSREGAGRSHLLH 63 (235)
T ss_pred CCCcCCccccccCccHHHHH-HHHHHHhCCCCCeEEEECCCCCCHHHHHH
Confidence 35567788888662222222 11222110 3777777776553
No 55
>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup. Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through
Probab=42.17 E-value=13 Score=31.98 Aligned_cols=35 Identities=14% Similarity=0.238 Sum_probs=24.1
Q ss_pred HHHhhhhhhhcCcc----------eeeeEeeeecCCCCCCCCCCc
Q psy17371 22 ALQARNIFEKIGTN----------EFVFHFSMMGDNLDSSLKETT 56 (237)
Q Consensus 22 ~~~~~~i~~~~G~~----------~sgktyt~~G~~~~~~~~~~~ 56 (237)
+.+..++|+..+.. ++..+||..|+||++++....
T Consensus 58 ~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~ 102 (319)
T cd01376 58 ECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDP 102 (319)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCc
Confidence 44555566655544 377899999999998776543
No 56
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=40.65 E-value=34 Score=23.37 Aligned_cols=30 Identities=20% Similarity=0.088 Sum_probs=25.3
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHhhcCCCCC
Q psy17371 196 ERFKEGRNINLSLMTLGQVITNLSDHSAVP 225 (237)
Q Consensus 196 ~~~~e~~~in~sl~~L~~vi~aL~~~~~~v 225 (237)
....|-..||.+|.+|..|+..|-.+..|+
T Consensus 23 ~~~~E~~~ins~LD~Lns~LD~LE~rnD~l 52 (83)
T PF03670_consen 23 FDEEEYAAINSMLDQLNSCLDHLEQRNDHL 52 (83)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 446688999999999999999998877654
No 57
>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup. Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c
Probab=39.93 E-value=14 Score=31.81 Aligned_cols=19 Identities=11% Similarity=0.340 Sum_probs=12.3
Q ss_pred eeeEeeeecCCCCCCCCCC
Q psy17371 37 FVFHFSMMGDNLDSSLKET 55 (237)
Q Consensus 37 sgktyt~~G~~~~~~~~~~ 55 (237)
+.++||..|+||++++...
T Consensus 79 ~i~ayG~tgSGKT~Tm~G~ 97 (325)
T cd01369 79 TIFAYGQTGSGKTYTMEGP 97 (325)
T ss_pred eEEEeCCCCCCceEEecCC
Confidence 4567777777777766433
No 58
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=38.12 E-value=6 Score=32.01 Aligned_cols=11 Identities=18% Similarity=-0.022 Sum_probs=10.0
Q ss_pred CcceeeeEeee
Q psy17371 33 GTNEFVFHFSM 43 (237)
Q Consensus 33 G~~~sgktyt~ 43 (237)
|.+|||||+++
T Consensus 30 G~TGsGKS~~~ 40 (229)
T PF01935_consen 30 GTTGSGKSNTV 40 (229)
T ss_pred CCCCCCHHHHH
Confidence 99999999985
No 59
>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins. Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain
Probab=37.70 E-value=15 Score=31.77 Aligned_cols=44 Identities=7% Similarity=0.134 Sum_probs=27.2
Q ss_pred hhhhhhhHHHHHHhhhhhhhcCcc----------eeeeEeeeecCCCCCCCCCC
Q psy17371 12 IEESLATLRYALQARNIFEKIGTN----------EFVFHFSMMGDNLDSSLKET 55 (237)
Q Consensus 12 ~~~~~~~~~y~~~~~~i~~~~G~~----------~sgktyt~~G~~~~~~~~~~ 55 (237)
.|.....+-.+....++|+..+.. +++.+||..|+||++++...
T Consensus 49 ~f~fd~vf~~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~ 102 (333)
T cd01371 49 VFTFDAVYDPNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGV 102 (333)
T ss_pred eeeeccccCCCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCC
Confidence 344433333344455577766433 56779999999999988443
No 60
>PRK09087 hypothetical protein; Validated
Probab=37.43 E-value=8.9 Score=31.33 Aligned_cols=19 Identities=16% Similarity=0.268 Sum_probs=12.8
Q ss_pred HHHHhHHHHHHHHHHHHhh
Q psy17371 201 GRNINLSLMTLGQVITNLS 219 (237)
Q Consensus 201 ~~~in~sl~~L~~vi~aL~ 219 (237)
...+.+++..|...+..|.
T Consensus 182 a~~~~r~~~~l~~~l~~L~ 200 (226)
T PRK09087 182 VSRMERSLFAAQTIVDRLD 200 (226)
T ss_pred HHHhhhhHHHHHHHHHHHH
Confidence 4456678877777666664
No 61
>PRK08727 hypothetical protein; Validated
Probab=37.01 E-value=15 Score=30.05 Aligned_cols=11 Identities=9% Similarity=-0.191 Sum_probs=8.1
Q ss_pred CcceeeeEeee
Q psy17371 33 GTNEFVFHFSM 43 (237)
Q Consensus 33 G~~~sgktyt~ 43 (237)
|.+|+||||-+
T Consensus 48 G~~G~GKThL~ 58 (233)
T PRK08727 48 GPAGTGKTHLA 58 (233)
T ss_pred CCCCCCHHHHH
Confidence 77777777754
No 62
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the third ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=36.37 E-value=1.3e+02 Score=20.04 Aligned_cols=36 Identities=11% Similarity=0.001 Sum_probs=28.7
Q ss_pred CCccccchhHHHhhccCCCCceEEEEEEEEEEecccccccc
Q psy17371 54 ETTGIIPRFCHQLFDQIPSNMVAQVKISYLEIYNEFVYDLL 94 (237)
Q Consensus 54 ~~~Gii~r~~~~Lf~~~~~~~~~~v~vS~~EIy~e~v~DLL 94 (237)
..|||+.+..+-|.+ ..+.|...-+.-+.|.+.|-+
T Consensus 10 DRpGLL~~i~~~l~~-----~~l~I~~A~I~T~gera~D~F 45 (75)
T cd04897 10 DRPKLLFDVVCTLTD-----MDYVVFHATIDTDGDDAHQEY 45 (75)
T ss_pred CcCcHHHHHHHHHHh-----CCeEEEEEEEeecCceEEEEE
Confidence 579999999999887 556666666777899988875
No 63
>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to
Probab=35.80 E-value=19 Score=31.01 Aligned_cols=17 Identities=6% Similarity=0.233 Sum_probs=9.6
Q ss_pred eeeEeeeecCCCCCCCC
Q psy17371 37 FVFHFSMMGDNLDSSLK 53 (237)
Q Consensus 37 sgktyt~~G~~~~~~~~ 53 (237)
+..+||..|+||++++.
T Consensus 76 ~i~ayG~tgSGKT~T~~ 92 (321)
T cd01374 76 TIFAYGQTSSGKTFTMS 92 (321)
T ss_pred eEEeecCCCCCCceecc
Confidence 34566666666665543
No 64
>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily. Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,
Probab=35.10 E-value=17 Score=31.63 Aligned_cols=16 Identities=13% Similarity=0.295 Sum_probs=10.8
Q ss_pred eeeEeeeecCCCCCCC
Q psy17371 37 FVFHFSMMGDNLDSSL 52 (237)
Q Consensus 37 sgktyt~~G~~~~~~~ 52 (237)
++++||..|+||++++
T Consensus 76 ~i~ayG~tgSGKT~Tm 91 (341)
T cd01372 76 TVLAYGQTGSGKTYTM 91 (341)
T ss_pred ceeeecCCCCCCcEEe
Confidence 4567777777777665
No 65
>PRK08116 hypothetical protein; Validated
Probab=34.35 E-value=17 Score=30.55 Aligned_cols=9 Identities=11% Similarity=-0.145 Sum_probs=4.9
Q ss_pred Ccccchhhh
Q psy17371 6 NPLQSHIEE 14 (237)
Q Consensus 6 ~~~~~~~~~ 14 (237)
+++|+.+..
T Consensus 81 ~~tFdnf~~ 89 (268)
T PRK08116 81 NSTFENFLF 89 (268)
T ss_pred hcchhcccC
Confidence 356666553
No 66
>KOG0953|consensus
Probab=34.25 E-value=13 Score=34.74 Aligned_cols=46 Identities=11% Similarity=0.197 Sum_probs=29.4
Q ss_pred hhhhcCcceeeeEeeeecCCCCCCCCCCccccchhHHHhhccCCCC
Q psy17371 28 IFEKIGTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSN 73 (237)
Q Consensus 28 i~~~~G~~~sgktyt~~G~~~~~~~~~~~Gii~r~~~~Lf~~~~~~ 73 (237)
|+-+.|.+-|||||...---++..-.---|=+-...+++|+++.+.
T Consensus 193 Ii~H~GPTNSGKTy~ALqrl~~aksGvycGPLrLLA~EV~~r~na~ 238 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYRALQRLKSAKSGVYCGPLRLLAHEVYDRLNAL 238 (700)
T ss_pred EEEEeCCCCCchhHHHHHHHhhhccceecchHHHHHHHHHHHhhhc
Confidence 6666799999999986544433211122355566777888877543
No 67
>PRK12377 putative replication protein; Provisional
Probab=32.79 E-value=19 Score=29.93 Aligned_cols=13 Identities=8% Similarity=-0.143 Sum_probs=9.1
Q ss_pred CcceeeeEeeeec
Q psy17371 33 GTNEFVFHFSMMG 45 (237)
Q Consensus 33 G~~~sgktyt~~G 45 (237)
|..|+||||-+.+
T Consensus 108 G~~GtGKThLa~A 120 (248)
T PRK12377 108 GKPGTGKNHLAAA 120 (248)
T ss_pred CCCCCCHHHHHHH
Confidence 7778888776543
No 68
>PF14695 LINES_C: Lines C-terminus
Probab=29.88 E-value=97 Score=17.90 Aligned_cols=30 Identities=33% Similarity=0.449 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCchhhhhcC
Q psy17371 207 SLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237 (237)
Q Consensus 207 sl~~L~~vi~aL~~~~~~vpyrdSkLT~lLq 237 (237)
.|..|..-|..|..+ .-.||--++|.|+|.
T Consensus 5 cl~~L~~aI~rL~~k-~LFPYN~~pLLrlL~ 34 (39)
T PF14695_consen 5 CLIRLRLAIERLVRK-NLFPYNPSPLLRLLE 34 (39)
T ss_pred HHHHHHHHHHHHHHC-CCCCCChHHHHHHHH
Confidence 555666667776653 377999999999873
No 69
>PF13245 AAA_19: Part of AAA domain
Probab=28.07 E-value=9.8 Score=25.34 Aligned_cols=11 Identities=9% Similarity=-0.058 Sum_probs=9.5
Q ss_pred CcceeeeEeee
Q psy17371 33 GTNEFVFHFSM 43 (237)
Q Consensus 33 G~~~sgktyt~ 43 (237)
|..|||||+++
T Consensus 17 g~pGtGKT~~~ 27 (76)
T PF13245_consen 17 GPPGTGKTTTL 27 (76)
T ss_pred CCCCCCHHHHH
Confidence 99999999775
No 70
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=27.39 E-value=23 Score=31.31 Aligned_cols=23 Identities=17% Similarity=0.242 Sum_probs=16.7
Q ss_pred cccchhHHHhhccCCCCceEEEE
Q psy17371 57 GIIPRFCHQLFDQIPSNMVAQVK 79 (237)
Q Consensus 57 Gii~r~~~~Lf~~~~~~~~~~v~ 79 (237)
|==+|.+++||+...++.-..|.
T Consensus 227 GEGaRlVRelF~lArekaPsIIF 249 (406)
T COG1222 227 GEGARLVRELFELAREKAPSIIF 249 (406)
T ss_pred ccchHHHHHHHHHHhhcCCeEEE
Confidence 44489999999999887443333
No 71
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=27.26 E-value=21 Score=28.91 Aligned_cols=45 Identities=13% Similarity=0.009 Sum_probs=17.3
Q ss_pred CcccchhhhhhhhHHHHHHhhhhhhhcCc-ceeeeEeeeecCCCCC
Q psy17371 6 NPLQSHIEESLATLRYALQARNIFEKIGT-NEFVFHFSMMGDNLDS 50 (237)
Q Consensus 6 ~~~~~~~~~~~~~~~y~~~~~~i~~~~G~-~~sgktyt~~G~~~~~ 50 (237)
..+||++.....-..--..++.+.+.-|. .....-||-.|.||+|
T Consensus 4 ~~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTH 49 (219)
T PF00308_consen 4 KYTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTH 49 (219)
T ss_dssp T-SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHH
T ss_pred CCccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHH
Confidence 35667766443322111223333332222 1234555656666543
No 72
>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi
Probab=27.25 E-value=31 Score=29.77 Aligned_cols=21 Identities=14% Similarity=0.360 Sum_probs=12.4
Q ss_pred ceeeeEeeeecCCCCCCCCCC
Q psy17371 35 NEFVFHFSMMGDNLDSSLKET 55 (237)
Q Consensus 35 ~~sgktyt~~G~~~~~~~~~~ 55 (237)
+++..+||..|+||++++...
T Consensus 78 ~~~i~ayG~tgSGKT~tl~G~ 98 (329)
T cd01366 78 NVCIFAYGQTGSGKTYTMEGP 98 (329)
T ss_pred ceEEEEeCCCCCCCcEEecCC
Confidence 345566666666666655444
No 73
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=25.75 E-value=19 Score=29.32 Aligned_cols=9 Identities=11% Similarity=-0.112 Sum_probs=8.0
Q ss_pred CcceeeeEe
Q psy17371 33 GTNEFVFHF 41 (237)
Q Consensus 33 G~~~sgkty 41 (237)
|.+|||||-
T Consensus 38 GpSGcGKTT 46 (259)
T COG4525 38 GPSGCGKTT 46 (259)
T ss_pred cCCCccHHH
Confidence 999999964
No 74
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=25.23 E-value=15 Score=32.31 Aligned_cols=37 Identities=16% Similarity=0.111 Sum_probs=22.2
Q ss_pred cCcccchhhhhhhhHHHHHHhhhhhhhcCcceeeeEee
Q psy17371 5 INPLQSHIEESLATLRYALQARNIFEKIGTNEFVFHFS 42 (237)
Q Consensus 5 ~~~~~~~~~~~~~~~~y~~~~~~i~~~~G~~~sgktyt 42 (237)
.++.|..+|+.+-..+....+..+|- -|.-||||||-
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv-~G~~GtGKs~l 38 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFV-TGPAGTGKSFL 38 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEE-EcCCCCChhHH
Confidence 45667777776644333333333332 29999999985
No 75
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=24.23 E-value=25 Score=27.77 Aligned_cols=12 Identities=25% Similarity=0.058 Sum_probs=0.0
Q ss_pred cCcceeeeEeee
Q psy17371 32 IGTNEFVFHFSM 43 (237)
Q Consensus 32 ~G~~~sgktyt~ 43 (237)
+|.||||||.=+
T Consensus 5 iG~N~sGKS~il 16 (303)
T PF13304_consen 5 IGPNGSGKSNIL 16 (303)
T ss_dssp ------------
T ss_pred cccccccccccc
Confidence 399999997643
No 76
>PRK06620 hypothetical protein; Validated
Probab=24.17 E-value=17 Score=29.43 Aligned_cols=13 Identities=8% Similarity=-0.074 Sum_probs=8.0
Q ss_pred cCcceeeeEeeee
Q psy17371 32 IGTNEFVFHFSMM 44 (237)
Q Consensus 32 ~G~~~sgktyt~~ 44 (237)
||..||||||-+.
T Consensus 50 ~Gp~G~GKThLl~ 62 (214)
T PRK06620 50 KGPSSSGKTYLTK 62 (214)
T ss_pred ECCCCCCHHHHHH
Confidence 3666666666553
No 77
>KOG0247|consensus
Probab=23.72 E-value=44 Score=32.19 Aligned_cols=22 Identities=14% Similarity=0.250 Sum_probs=18.3
Q ss_pred eEeeeecCCCCCCCCCCccccc
Q psy17371 39 FHFSMMGDNLDSSLKETTGIIP 60 (237)
Q Consensus 39 ktyt~~G~~~~~~~~~~~Gii~ 60 (237)
+|||.+|+||++++...++=.-
T Consensus 119 FTyGVTgSGKTYTm~G~~~~~G 140 (809)
T KOG0247|consen 119 FTYGVTGSGKTYTMTGTPDRPG 140 (809)
T ss_pred EEeeccCCCceEEeecCCCCCC
Confidence 5999999999998887776554
No 78
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=23.67 E-value=4.2e+02 Score=21.85 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=33.5
Q ss_pred ecCHHHHHHHHHHHHhhCccccCCCCCCCCCceEEEEEEEEEEecCCCceeeeeeEEEEEEcCCCCCc
Q psy17371 121 VSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERV 188 (237)
Q Consensus 121 v~s~~e~~~~l~~~~~~R~~~~~~~n~~ssrsH~v~~i~v~~~~~~~~~~~~~~s~l~~vDLagse~~ 188 (237)
+.+++++.+.+..+...- ... ...-|.-++.+.+.... .-.++|||++|..+.
T Consensus 86 ~~~~~~v~~~i~~~~~~~-~~~-----~~~~s~~~i~l~i~~p~---------~~~ltLIDlPGl~~~ 138 (240)
T smart00053 86 FTDFDEVRNEIEAETDRV-TGT-----NKGISPVPINLRVYSPH---------VLNLTLIDLPGITKV 138 (240)
T ss_pred cCCHHHHHHHHHHHHHHh-cCC-----CCcccCcceEEEEeCCC---------CCceEEEeCCCcccc
Confidence 467888888887766531 111 11234557777776443 345899999999754
No 79
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=23.33 E-value=18 Score=25.63 Aligned_cols=15 Identities=0% Similarity=-0.266 Sum_probs=11.6
Q ss_pred CcceeeeEeeeecCC
Q psy17371 33 GTNEFVFHFSMMGDN 47 (237)
Q Consensus 33 G~~~sgktyt~~G~~ 47 (237)
|.+|+|||+.+...-
T Consensus 7 ~~~G~GKT~~~~~~~ 21 (144)
T cd00046 7 APTGSGKTLAALLPI 21 (144)
T ss_pred CCCCCchhHHHHHHH
Confidence 889999998765543
No 80
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=22.03 E-value=21 Score=22.91 Aligned_cols=8 Identities=25% Similarity=0.007 Sum_probs=7.4
Q ss_pred CcceeeeE
Q psy17371 33 GTNEFVFH 40 (237)
Q Consensus 33 G~~~sgkt 40 (237)
|.||+|||
T Consensus 30 G~nGsGKS 37 (62)
T PF13555_consen 30 GPNGSGKS 37 (62)
T ss_pred CCCCCCHH
Confidence 99999996
No 81
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=21.91 E-value=11 Score=28.68 Aligned_cols=13 Identities=0% Similarity=-0.192 Sum_probs=10.9
Q ss_pred CcceeeeEeeeec
Q psy17371 33 GTNEFVFHFSMMG 45 (237)
Q Consensus 33 G~~~sgktyt~~G 45 (237)
+.+|||||+.+..
T Consensus 32 ~~tGsGKT~~~~~ 44 (184)
T PF04851_consen 32 APTGSGKTIIALA 44 (184)
T ss_dssp ESTTSSHHHHHHH
T ss_pred ECCCCCcChhhhh
Confidence 8899999998764
No 82
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=21.50 E-value=42 Score=31.84 Aligned_cols=13 Identities=0% Similarity=-0.302 Sum_probs=7.6
Q ss_pred cCcccchhhhhhh
Q psy17371 5 INPLQSHIEESLA 17 (237)
Q Consensus 5 ~~~~~~~~~~~~~ 17 (237)
...+||.++....
T Consensus 283 ~~~TFDnFvvG~s 295 (617)
T PRK14086 283 PKYTFDTFVIGAS 295 (617)
T ss_pred CCCCHhhhcCCCc
Confidence 4567777764443
Done!