RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17371
(237 letters)
>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like
proteins. KIF1A (Unc104) transports synaptic vesicles to
the nerve terminal, KIF1B has been implicated in
transport of mitochondria. Both proteins are expressed
in neurons. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
In contrast to the majority of dimeric kinesins, most
KIF1A/Unc104 kinesins are monomeric motors. A
lysine-rich loop in KIF1A binds to the negatively
charged C-terminus of tubulin and compensates for the
lack of a second motor domain, allowing KIF1A to move
processively.
Length = 356
Score = 247 bits (632), Expect = 2e-81
Identities = 107/214 (50%), Positives = 140/214 (65%), Gaps = 23/214 (10%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS----NMVAQVKISYLEIYNEFVYDLLSS 96
++MMG KE GIIPR C +LF +I S N+ +V++SY+EIYNE V DLL+
Sbjct: 104 YTMMGY------KEEKGIIPRLCEELFQRIESKKEQNLSYEVEVSYMEIYNEKVRDLLNP 157
Query: 97 ERKA---LKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSH 153
++K LKVRE P G +V DLS V+S+ ++Q L EGNK+R TASTNMND SSRSH
Sbjct: 158 KKKNKGNLKVREHPVLGPYVEDLSKVAVTSYEDIQNLLEEGNKSRTTASTNMNDTSSRSH 217
Query: 154 SIFQIQLTLT--EDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTL 211
++F I LT + T+K S+I+LVDLAGSER + T A +R KEG NIN SL TL
Sbjct: 218 AVFTIVLTQKKLDKETDLTTEKVSKISLVDLAGSERASSTGAEGDRLKEGSNINKSLTTL 277
Query: 212 GQVITNLSDHSAVP--------PYRNSTLTYLLK 237
G+VI+ L+D+S+ PYR+S LT+LLK
Sbjct: 278 GKVISALADNSSAKSKKKSSFIPYRDSVLTWLLK 311
Score = 44.2 bits (105), Expect = 3e-05
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+ATI+P + EE+L+TLRYA +A+ I
Sbjct: 322 MIATISPADINYEETLSTLRYADRAKKI 349
>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain. ATPase.
Microtubule-dependent molecular motors that play
important roles in intracellular transport of organelles
and in cell division.
Length = 335
Score = 240 bits (615), Expect = 4e-79
Identities = 90/202 (44%), Positives = 121/202 (59%), Gaps = 11/202 (5%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSSE 97
++M+G ++ GIIPR LF++I VK+SYLEIYNE + DLL+
Sbjct: 95 YTMIGT------PDSPGIIPRALKDLFEKIDKREEGWQFSVKVSYLEIYNEKIRDLLNPS 148
Query: 98 RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
K L++RE G++V L+ VSSF E+ L +GNK R A+T MN++SSRSH++F
Sbjct: 149 SKKLEIREDEKGGVYVKGLTEISVSSFEEVYNLLEKGNKNRTVAATKMNEESSRSHAVFT 208
Query: 158 IQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITN 217
I + SS + K S++NLVDLAGSER +T A +R KE NIN SL LG VI
Sbjct: 209 ITVEQKIKNSSSGSGKASKLNLVDLAGSERAKKTGAEGDRLKEAGNINKSLSALGNVINA 268
Query: 218 LSDHSAVP--PYRNSTLTYLLK 237
L+ HS PYR+S LT LL+
Sbjct: 269 LAQHSKSRHIPYRDSKLTRLLQ 290
Score = 41.0 bits (97), Expect = 2e-04
Identities = 15/35 (42%), Positives = 25/35 (71%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTN 35
M+A ++P S++EE+L+TLR+A +A+ I K N
Sbjct: 301 MIANVSPSSSNLEETLSTLRFASRAKEIKNKPIVN 335
>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain.
Length = 326
Score = 238 bits (609), Expect = 3e-78
Identities = 91/205 (44%), Positives = 125/205 (60%), Gaps = 13/205 (6%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLLS- 95
++M GD + GIIPR LF++I V++SYLEIYNE +YDLLS
Sbjct: 89 YTMEGDPPEEE----PGIIPRALEDLFERIEERKERKWSFSVRVSYLEIYNEKIYDLLSP 144
Query: 96 -SERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHS 154
S++K L++RE P G++V L+ V+S E+ + L GNK R ASTNMN++SSRSH+
Sbjct: 145 SSKKKKLRIREDPKKGVYVKGLTEVEVTSAEEVLELLELGNKNRTVASTNMNEESSRSHA 204
Query: 155 IFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATE-ERFKEGRNINLSLMTLGQ 213
IF I + + + + K ++NLVDLAGSER ++T A R KE NIN SL LG
Sbjct: 205 IFTITVE-QRNRDTDGSVKTGKLNLVDLAGSERASKTGAAGGRRLKEAANINKSLSALGN 263
Query: 214 VITNLSD-HSAVPPYRNSTLTYLLK 237
VI L++ S+ PYR+S LT LL+
Sbjct: 264 VINALAENQSSHIPYRDSKLTRLLQ 288
Score = 43.4 bits (103), Expect = 5e-05
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+A I+P S+ EE+L+TLR+A +A+NI
Sbjct: 299 MIANISPSDSNYEETLSTLRFASRAKNI 326
>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type), in some its is found in the middle (M-type),
or C-terminal (C-type). N-type and M-type kinesins are
(+) end-directed motors, while C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 328
Score = 214 bits (546), Expect = 9e-69
Identities = 92/205 (44%), Positives = 116/205 (56%), Gaps = 14/205 (6%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLLSS 96
++M G + GIIPR LF+ I N V +SYLEIYNE VYDLLS
Sbjct: 94 YTMFGSP------KDPGIIPRALEDLFNLIDERKEKNKSFSVSVSYLEIYNEKVYDLLSP 147
Query: 97 E--RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHS 154
E K L +RE P G++V L+ V S + L +G K R TAST MN++SSRSH+
Sbjct: 148 EPPSKPLSLREDPKGGVYVKGLTEVEVGSAEDALSLLQKGLKNRTTASTAMNERSSRSHA 207
Query: 155 IFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQV 214
IF I + T + K S++NLVDLAGSER +T A +R KE +NIN SL LG V
Sbjct: 208 IFTIHVEQRNTTNDGRSIKSSKLNLVDLAGSERAKKTGAEGDRLKEAKNINKSLSALGNV 267
Query: 215 ITNLSDHSAVP--PYRNSTLTYLLK 237
I+ LS PYR+S LT LL+
Sbjct: 268 ISALSSGQKKKHIPYRDSKLTRLLQ 292
Score = 34.5 bits (80), Expect = 0.032
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 1 MLATINPLQSHIEESLATLRYALQAR 26
M+A I+P + +E+L+TLR+A +A+
Sbjct: 303 MIANISPSSENYDETLSTLRFASRAK 328
>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain,
KIFC2/KIFC3/ncd-like carboxy-terminal kinesins. Ncd is a
spindle motor protein necessary for chromosome
segregation in meiosis. KIFC2/KIFC3-like kinesins have
been implicated in motility of the Golgi apparatus as
well as dentritic and axonal transport in neurons. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In this subgroup the motor domain is found at
the C-terminus (C-type). C-type kinesins are (-)
end-directed motors, i.e. they transport cargo towards
the (-) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 329
Score = 196 bits (500), Expect = 8e-62
Identities = 85/205 (41%), Positives = 122/205 (59%), Gaps = 17/205 (8%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSNMVA----QVKISYLEIYNEFVYDLLSS 96
++M G E GIIPR QLF+ + S LEIYNE + DLL++
Sbjct: 93 YTMEGP------PENPGIIPRALEQLFNTAEELKEKGWSYTITASMLEIYNETIRDLLAT 146
Query: 97 E---RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSH 153
+ +K L+++ +V++L+ VSS E+ + L+ G+K R+ ASTNMN+ SSRSH
Sbjct: 147 KPAPKKKLEIKHDSKGETYVTNLTEVPVSSPEEVTRLLNLGSKNRSVASTNMNEHSSRSH 206
Query: 154 SIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQ 213
++FQ+++ T T+ ++NLVDLAGSER+ ++ AT +R KE + IN SL LG
Sbjct: 207 AVFQLKIRGTNLQTGEQTR--GKLNLVDLAGSERLKKSGATGDRLKEAQAINKSLSALGD 264
Query: 214 VITNL-SDHSAVPPYRNSTLTYLLK 237
VI+ L S S V PYRNS LTYLL+
Sbjct: 265 VISALRSKDSHV-PYRNSKLTYLLQ 288
Score = 34.1 bits (79), Expect = 0.047
Identities = 11/28 (39%), Positives = 21/28 (75%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M I+PL+S++ E+L +LR+A + R++
Sbjct: 299 MFVNISPLESNLSETLCSLRFASRVRSV 326
>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain
(KHC) or KIF5-like subgroup. Members of this group have
been associated with organelle transport. This catalytic
(head) domain has ATPase activity and belongs to the
larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 325
Score = 192 bits (489), Expect = 3e-60
Identities = 87/201 (43%), Positives = 122/201 (60%), Gaps = 9/201 (4%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSSE 97
++M G D LK GIIPR H +F+ I N+ VK+SYLEIY E + DLL
Sbjct: 92 YTMEGPPGDPELK---GIIPRIVHDIFEHISSMDENLEFHVKVSYLEIYMEKIRDLLDVS 148
Query: 98 RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
+ L+V E + G++V L+ VSS E+ + ++EG RA ASTNMN++SSRSHSIF
Sbjct: 149 KDNLQVHEDKNRGVYVKGLTERFVSSPEEVLEVINEGKSNRAVASTNMNEESSRSHSIFL 208
Query: 158 IQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITN 217
I L E+ + ++ ++ LVDLAGSE+V++T A + +E + IN SL LG VI
Sbjct: 209 ITLK-QENVETGSKKR-GKLFLVDLAGSEKVSKTGAEGQTLEEAKKINKSLSALGNVINA 266
Query: 218 LSD-HSAVPPYRNSTLTYLLK 237
L+D S PYR+S LT +L+
Sbjct: 267 LTDGKSTHIPYRDSKLTRILQ 287
>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like
proteins. Subgroup of kinesins, which form heterotrimers
composed of 2 kinesins and one non-motor accessory
subunit. Kinesins II play important roles in ciliary
transport, and have been implicated in neuronal
transport, melanosome transport, the secretory pathway,
and mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In this group the motor
domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 333
Score = 189 bits (483), Expect = 2e-59
Identities = 92/204 (45%), Positives = 123/204 (60%), Gaps = 12/204 (5%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSNMVAQ--VKISYLEIYNEFVYDLLSSE- 97
F+M G E GIIP +F I Q V++SYLEIYNE V DLL +
Sbjct: 97 FTMEGVR---EPPELRGIIPNSFAHIFGHIAKAENVQFLVRVSYLEIYNEEVRDLLGKDQ 153
Query: 98 RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
+K L+++E PD G++V DLS+ V + EM K ++ GNK R+ +TNMN+ SSRSHSIF
Sbjct: 154 KKKLELKERPDRGVYVKDLSMFVVKNAEEMDKLMTLGNKNRSVGATNMNEDSSRSHSIFT 213
Query: 158 IQL---TLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQV 214
I + ED + + + ++NLVDLAGSER ++T AT +R KE INLSL LG V
Sbjct: 214 ITIECSEKGEDGENHI--RVGKLNLVDLAGSERQSKTGATGDRLKEATKINLSLSALGNV 271
Query: 215 ITNLSDHSAVP-PYRNSTLTYLLK 237
I+ L D + PYR+S LT LL+
Sbjct: 272 ISALVDGKSTHIPYRDSKLTRLLQ 295
Score = 35.4 bits (82), Expect = 0.019
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M A I P + +E+L+TLRYA +A+NI
Sbjct: 306 MCANIGPADYNYDETLSTLRYANRAKNI 333
>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like
subgroup, involved in chromosome movement and/or spindle
elongation during mitosis. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In most
kinesins, the motor domain is found at the N-terminus
(N-type). N-type kinesins are (+) end-directed motors,
i.e. they transport cargo towards the (+) end of the
microtubule. Kinesin motor domains hydrolyze ATP at a
rate of about 80 per second, and move along the
microtubule at a speed of about 6400 Angstroms per
second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 321
Score = 189 bits (481), Expect = 4e-59
Identities = 84/201 (41%), Positives = 122/201 (60%), Gaps = 12/201 (5%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIP--SNMVAQVKISYLEIYNEFVYDLLSSER 98
F+M GD ++ GIIP +F +I + +++SYLEIYNE + DLLS
Sbjct: 89 FTMSGD------EQEPGIIPLAVRDIFQRIQDTPDREFLLRVSYLEIYNEKIKDLLSPSP 142
Query: 99 KALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQI 158
+ L++RE P+ G+ V+ L+ V+S + + ++ G K R T+ N++SSRSH+IFQ+
Sbjct: 143 QELRIREDPNKGVVVAGLTEEIVTSPEHLLQLIARGEKNRHVGETDFNERSSRSHTIFQL 202
Query: 159 QLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITN 217
+ E S T + S +NL+DLAGSER +QT A ER KEG IN SL+TLG VI+
Sbjct: 203 TIESRERGDSESGTVRVSTLNLIDLAGSERASQTGAG-ERRKEGSFINKSLLTLGTVISK 261
Query: 218 LSD--HSAVPPYRNSTLTYLL 236
LS+ +S PYR+S LT +L
Sbjct: 262 LSEGKNSGHIPYRDSKLTRIL 282
Score = 34.6 bits (80), Expect = 0.032
Identities = 12/27 (44%), Positives = 21/27 (77%)
Query: 2 LATINPLQSHIEESLATLRYALQARNI 28
+ TI+P SH+EE+L TL++A +A+ +
Sbjct: 295 ICTISPASSHVEETLNTLKFASRAKKV 321
>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily.
Members of this group seem to perform a variety of
functions, and have been implicated in neuronal
organelle transport and chromosome segregation during
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 341
Score = 179 bits (455), Expect = 6e-55
Identities = 84/214 (39%), Positives = 115/214 (53%), Gaps = 17/214 (7%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLF---DQIPSNMVAQVKISYLEIYNEFVYDLLSSE 97
++M S +E GIIPR +F D+ Q+K+S+LE+YNE V DLLS
Sbjct: 89 YTMGTAFTASEDEEEVGIIPRAIQHIFKKIDEKKDEPDFQLKVSFLELYNEEVRDLLSPS 148
Query: 98 RKA---LKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHS 154
+++RE I + L+ V+S E+ L +G+ +R TAST MN +SSRSH+
Sbjct: 149 TSEKSPIQIREDSKGNIIIVGLTEVTVNSAQEVMSCLEQGSLSRTTASTAMNSQSSRSHA 208
Query: 155 IFQIQLTLTEDTGSSVTQK--------CSQINLVDLAGSERVAQTKATEERFKEGRNINL 206
IF I L T G S+ + VDLAGSER+ +T AT +R KEG +IN
Sbjct: 209 IFTITLEQTRKNGPIAPMSGDDKNSTLTSKFHFVDLAGSERLKKTGATGDRLKEGISINS 268
Query: 207 SLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
L+ LG VI+ L D S PYR+S LT LL+
Sbjct: 269 GLLALGNVISALGDESKKGSHVPYRDSKLTRLLQ 302
Score = 40.0 bits (94), Expect = 6e-04
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+A ++P S+ EE+L TL+YA +ARNI
Sbjct: 313 MIACVSPADSNFEETLNTLKYANRARNI 340
>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole
proteins, participate in spindle assembly and chromosome
segregation during cell division. This catalytic (head)
domain has ATPase activity and belongs to the larger
group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type), N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 352
Score = 170 bits (433), Expect = 1e-51
Identities = 89/208 (42%), Positives = 124/208 (59%), Gaps = 12/208 (5%)
Query: 41 FSMMGD-----NLDSSLKETTGIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLL 94
++M GD L GIIPR +QLF+++ S VK+SYLE+YNE ++DLL
Sbjct: 97 YTMEGDRTDNKGSTWELSPHAGIIPRALYQLFEKLESQNTEYSVKVSYLELYNEELFDLL 156
Query: 95 SSE---RKALKVRESPDT--GIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKS 149
SSE K L++ + + G+ + L V++ +E K L +G+ R TA+T MND+S
Sbjct: 157 SSESDLNKPLRIFDDTNNKGGVVIQGLEEITVNNANEGLKLLEKGSAKRKTAATLMNDQS 216
Query: 150 SRSHSIFQIQLTLTEDTGSSVTQ-KCSQINLVDLAGSERVAQTKATEERFKEGRNINLSL 208
SRSHSIF I + + E T S K ++NLVDLAGSE + ++ A +R +E NIN SL
Sbjct: 217 SRSHSIFSITIHIKETTISGEELVKIGKLNLVDLAGSENIGRSGAENKRAREAGNINQSL 276
Query: 209 MTLGQVITNLSDHSAVPPYRNSTLTYLL 236
+TLG+VI L + S PYR S LT LL
Sbjct: 277 LTLGRVINALVEKSPHIPYRESKLTRLL 304
Score = 37.3 bits (87), Expect = 0.004
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
++ATI+P ++EE+L+TL YA +A+NI
Sbjct: 316 IIATISPASINLEETLSTLEYAHRAKNI 343
>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup.
The yeast kinesin KIP3 plays a role in positioning the
mitotic spindle. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 338
Score = 169 bits (431), Expect = 2e-51
Identities = 77/190 (40%), Positives = 103/190 (54%), Gaps = 11/190 (5%)
Query: 57 GIIPRFCHQLFDQIPS---NMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFV 113
G++ LFD+I + +V +SYLEIYNE + DLLS L++RE P+ GI V
Sbjct: 113 GLMVLTMKDLFDKIEERKDDKEFEVSLSYLEIYNETIRDLLSPSSGPLELREDPNQGIVV 172
Query: 114 SDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQI---QLTLTEDTGSSV 170
+ L+ H S E+ + L +GN+ R T N SSRSH++ QI Q T V
Sbjct: 173 AGLTEHQPKSAEEILELLMKGNRNRTQEPTEANATSSRSHAVLQITVRQKDRTASINQQV 232
Query: 171 TQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVP---PY 227
+++L+DLAGSER + T +R KEG NIN SL+ LG I L D PY
Sbjct: 233 RI--GKLSLIDLAGSERASATNNRGQRLKEGANINRSLLALGNCINALVDGKKKNKHIPY 290
Query: 228 RNSTLTYLLK 237
R+S LT LLK
Sbjct: 291 RDSKLTRLLK 300
Score = 34.6 bits (80), Expect = 0.033
Identities = 15/28 (53%), Positives = 21/28 (75%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+A I+P SH EE+ TL+YA +A+NI
Sbjct: 311 MIANISPSSSHYEETHNTLKYANRAKNI 338
>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup.
Members of this subgroup seem to play a role in mitosis
and meiosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 337
Score = 166 bits (422), Expect = 3e-50
Identities = 85/213 (39%), Positives = 116/213 (54%), Gaps = 19/213 (8%)
Query: 41 FSMMG--DNLDSSLKETTGIIPRFCHQLFDQI-------PSNMVAQVKISYLEIYNEFVY 91
++MMG + D S G+IPR LF I + K S+LEIYNE +
Sbjct: 90 YTMMGPSSSDDESPHGLQGVIPRIFEYLFSLIQREEEKRGDGLKFLCKCSFLEIYNEQIT 149
Query: 92 DLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSR 151
DLL + LK+RE G++V +L+ VSS+ ++ + L +G R A+T+MN +SSR
Sbjct: 150 DLLDPTSRNLKIREDIKKGVYVENLTEEYVSSYEDVYQVLLKGLSNRKVAATSMNSESSR 209
Query: 152 SHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTL 211
SH++F + E SS + S++NLVDLAGSER A R KE +NIN SL TL
Sbjct: 210 SHAVFTCTIESWEKKASSTNIRTSRLNLVDLAGSERQKDDGAEGVRLKEAKNINKSLSTL 269
Query: 212 GQVITNLSD-------HSAVPPYRNSTLTYLLK 237
G VI L D H PYR+S LT+LL+
Sbjct: 270 GHVIMALVDVAHGKQRHV---PYRDSKLTFLLR 299
>gnl|CDD|238664 cd01368, KISc_KIF23_like, Kinesin motor domain, KIF23-like
subgroup. Members of this group may play a role in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 345
Score = 151 bits (383), Expect = 3e-44
Identities = 77/203 (37%), Positives = 114/203 (56%), Gaps = 21/203 (10%)
Query: 53 KETTGIIPRFCHQLFDQIPSNMVAQVKISYLEIYNEFVYDLL------SSERKALKVRES 106
GI+PR +F+ I V +SY+EIYN ++YDLL + +R++L++RE
Sbjct: 110 PGDGGILPRSLDVIFNSIGG---YSVFVSYVEIYNNYIYDLLEDSPSSTKKRQSLRLRED 166
Query: 107 PDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQL------ 160
+ ++V+ L+ VSS E ++ G K R A T +N +SSRSHS+F I+L
Sbjct: 167 HNGNMYVAGLTEVEVSSTEEAREVFKRGQKNRRVAGTKLNRESSRSHSVFTIKLVQAPGD 226
Query: 161 TLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNL-- 218
+ + SQ++LVDLAGSER ++T+ T ER KE NIN SLMTLG+ I L
Sbjct: 227 SDGDVDQDKDQITVSQLSLVDLAGSERTSRTQNTGERLKEAGNINTSLMTLGKCIEVLRE 286
Query: 219 ----SDHSAVPPYRNSTLTYLLK 237
+ + PYR+S LT+L +
Sbjct: 287 NQLSGSTNKMVPYRDSKLTHLFQ 309
>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup;
might play a role in cell shape remodeling. This
catalytic (head) domain has ATPase activity and belongs
to the larger group of P-loop NTPases. Kinesins are
microtubule-dependent molecular motors that play
important roles in intracellular transport and in cell
division. In most kinesins, the motor domain is found at
the N-terminus (N-type). N-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second. To achieve that, kinesin head groups work in
pairs. Upon replacing ADP with ATP, a kinesin motor
domain increases its affinity for microtubule binding
and locks in place. Also, the neck linker binds to the
motor domain, which repositions the other head domain
through the coiled-coil domain close to a second tubulin
dimer, about 80 Angstroms along the microtubule.
Meanwhile, ATP hydrolysis takes place, and when the
second head domain binds to the microtubule, the first
domain again replaces ADP with ATP, triggering a
conformational change that pulls the first domain
forward.
Length = 334
Score = 149 bits (378), Expect = 1e-43
Identities = 80/206 (38%), Positives = 109/206 (52%), Gaps = 12/206 (5%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIP--SNMVAQVKISYLEIYNEFVYDLLSSER 98
F+M G + + G+IPR Q+F ++ + V +SYLEIYNE +YDLL
Sbjct: 96 FTMTGG---TESYKDRGLIPRALEQVFREVAMRATKTYTVHVSYLEIYNEQLYDLLGDTP 152
Query: 99 ------KALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRS 152
A+ + E + I V LS+H ++ E L G R A T+MN SSRS
Sbjct: 153 EALESLPAVTILEDSEQNIHVKGLSLHSATTEEEALNLLFLGETNRTIAETSMNQASSRS 212
Query: 153 HSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLG 212
H IF I L S + S++NLVDLAGSERV++T + + KE + IN SL L
Sbjct: 213 HCIFTIHLESRSREAGSEVVRLSKLNLVDLAGSERVSKTGVSGQVLKEAKYINKSLSFLE 272
Query: 213 QVITNLSD-HSAVPPYRNSTLTYLLK 237
QVI LS+ PYRNS LT++L+
Sbjct: 273 QVINALSEKARTHVPYRNSKLTHVLR 298
Score = 31.3 bits (71), Expect = 0.44
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 1 MLATINPLQSHIEESLATLRYALQAR 26
MLATI S+++E+L+TLR+A +
Sbjct: 309 MLATIWVEPSNLDETLSTLRFAQRVA 334
>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton].
Length = 568
Score = 146 bits (371), Expect = 5e-41
Identities = 93/202 (46%), Positives = 120/202 (59%), Gaps = 13/202 (6%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSNMVAQ---VKISYLEIYNEFVYDLLSSE 97
++M G +E GIIP +LF ++ + + V ISYLEIYNE +YDLLS
Sbjct: 105 YTMSGT------EEEPGIIPLSLKELFSKLEDLSMTKDFAVSISYLEIYNEKIYDLLSPN 158
Query: 98 RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
++L +RE G+ V+ L+ VSS E+ L +G K R TAST +ND+SSRSHSIFQ
Sbjct: 159 EESLNIREDSLLGVKVAGLTEKHVSSKEEILDLLRKGEKNRTTASTEINDESSRSHSIFQ 218
Query: 158 IQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITN 217
I L S T + S+++LVDLAGSER A+T R KEG +IN SL+TLG VI
Sbjct: 219 I--ELASKNKVSGTSETSKLSLVDLAGSERAARTGNRGTRLKEGASINKSLLTLGNVINA 276
Query: 218 LSD--HSAVPPYRNSTLTYLLK 237
L D S PYR S LT LL+
Sbjct: 277 LGDKKKSGHIPYRESKLTRLLQ 298
Score = 44.3 bits (105), Expect = 2e-05
Identities = 55/267 (20%), Positives = 93/267 (34%), Gaps = 55/267 (20%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI------------------------FEKIGTNE 36
++ TI+P + EE++ TL++A +A++I ++
Sbjct: 309 VICTISPSSNSFEETINTLKFASRAKSIKNKIQVNSSSDSSREIEEIKFDLSEDRSEIEI 368
Query: 37 FVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSNMVAQV-----------------K 79
VF SSL + + +
Sbjct: 369 LVFREQSQ--LSQSSLSGIFAYMQSLKKETETLKSRIDLIMKSIISGTFERKKLLKEEGW 426
Query: 80 ISYLEIYNEFVY-----DLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEG 134
+ + L E K + + S+ + SE
Sbjct: 427 KYKSTLQFLRIEIDRLLLLREEELSKKKTKIHKLNKLRHDLSSLLSSIPEETSDRVESEK 486
Query: 135 NKA-RATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKA 193
R++AST +N +SSRSHS F+ GS+ + K +N VDLAGSER +++
Sbjct: 487 ASKLRSSASTKLNLRSSRSHSKFRD-----HLNGSNSSTKELSLNQVDLAGSERKV-SQS 540
Query: 194 TEERFKEGRNINLSLMTLGQVITNLSD 220
E +E +++N SL +LG VI L
Sbjct: 541 VGELLRETQSLNKSLSSLGDVIHALGS 567
>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group.
KIF2 is a protein expressed in neurons, which has been
associated with axonal transport and neuron development;
alternative splice forms have been implicated in
lysosomal translocation. This catalytic (head) domain
has ATPase activity and belongs to the larger group of
P-loop NTPases. Kinesins are microtubule-dependent
molecular motors that play important roles in
intracellular transport and in cell division. In this
subgroup the motor domain is found in the middle
(M-type) of the protein chain. M-type kinesins are (+)
end-directed motors, i.e. they transport cargo towards
the (+) end of the microtubule. Kinesin motor domains
hydrolyze ATP at a rate of about 80 per second, and move
along the microtubule at a speed of about 6400 Angstroms
per second (KIF2 may be slower). To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 322
Score = 135 bits (342), Expect = 2e-38
Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 14/199 (7%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI-PSNMVAQVKISYLEIYNEFVYDLLSSERK 99
++M+GD G+ +F + N V +S+ EIY ++DLL+ +RK
Sbjct: 100 YTMLGDE------NQEGLYALAARDIFRLLAQPNDDLGVTVSFFEIYGGKLFDLLN-DRK 152
Query: 100 ALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQ 159
L V E + + L+ V+S E+ + + GN R T ST ND+SSRSH+I QI
Sbjct: 153 RLSVLEDGKGNVQIVGLTEKPVTSVDELLELIESGNSLRTTGSTGANDQSSRSHAILQII 212
Query: 160 LTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKA-TEERFKEGRNINLSLMTLGQVITNL 218
L + + +++ +DLAGSER A T + KEG IN SL+ L + I L
Sbjct: 213 L-KNKKLNKLL----GKLSFIDLAGSERGADTSEHDRQTRKEGAEINKSLLALKECIRAL 267
Query: 219 SDHSAVPPYRNSTLTYLLK 237
+ + A P+R S LT +L+
Sbjct: 268 ASNKAHVPFRGSKLTQVLR 286
Score = 36.1 bits (84), Expect = 0.009
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 1 MLATINPLQSHIEESLATLRYA 22
M+ATI+P S E +L TLRYA
Sbjct: 297 MIATISPSASSCEHTLNTLRYA 318
>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like
subgroup. Members of this group might play a role in
regulating chromosomal movement along microtubules in
mitosis. This catalytic (head) domain has ATPase
activity and belongs to the larger group of P-loop
NTPases. Kinesins are microtubule-dependent molecular
motors that play important roles in intracellular
transport and in cell division. In most kinesins, the
motor domain is found at the N-terminus (N-type). N-type
kinesins are (+) end-directed motors, i.e. they
transport cargo towards the (+) end of the microtubule.
Kinesin motor domains hydrolyze ATP at a rate of about
80 per second, and move along the microtubule at a speed
of about 6400 Angstroms per second. To achieve that,
kinesin head groups work in pairs. Upon replacing ADP
with ATP, a kinesin motor domain increases its affinity
for microtubule binding and locks in place. Also, the
neck linker binds to the motor domain, which repositions
the other head domain through the coiled-coil domain
close to a second tubulin dimer, about 80 Angstroms
along the microtubule. Meanwhile, ATP hydrolysis takes
place, and when the second head domain binds to the
microtubule, the first domain again replaces ADP with
ATP, triggering a conformational change that pulls the
first domain forward.
Length = 319
Score = 129 bits (326), Expect = 4e-36
Identities = 71/198 (35%), Positives = 99/198 (50%), Gaps = 11/198 (5%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLLSSERK 99
+M+GD G+IPR L +SY EIYNE VYDLL +K
Sbjct: 96 HTMLGD------PNEPGLIPRTLSDLLRMGRKQAWTGAFSMSYYEIYNEKVYDLLEPAKK 149
Query: 100 ALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQ 159
L +RE D I + L+ + S +E ++ +K R A+T +ND SSRSH++ +I+
Sbjct: 150 ELPIREDKDGNILIVGLTSKPIKSMAEFEEAYIPASKNRTVAATKLNDNSSRSHAVLRIK 209
Query: 160 LTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLS 219
+T S Q ++NL+DLAGSE +T R KE IN SL L +V+ L+
Sbjct: 210 VTQPA----SNIQLEGKLNLIDLAGSEDNRRTGNEGIRLKESAAINSSLFVLSKVVDALN 265
Query: 220 DHSAVPPYRNSTLTYLLK 237
PYR S LT LL+
Sbjct: 266 KGLPRIPYRESKLTRLLQ 283
>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional.
Length = 1320
Score = 123 bits (310), Expect = 3e-32
Identities = 77/198 (38%), Positives = 112/198 (56%), Gaps = 19/198 (9%)
Query: 57 GIIPRFCHQLFDQIPSNMVA--------QVKISYLEIYNEFVYDLLSSERKALKVRESPD 108
G+ PR +LF +I + Q + S+LEIYNE + DLL +K L++RE
Sbjct: 201 GLTPRVFERLFARINEEQIKHADRQLKYQCRCSFLEIYNEQITDLLDPSQKNLQIREDVK 260
Query: 109 TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIF----QIQLTLTE 164
+G++V +L+ V + ++ + L +G R T +T++N +SSRSHS+F + +
Sbjct: 261 SGVYVENLTEEYVKTMKDVTQLLIKGLSNRRTGATSINAESSRSHSVFTCVVESRCKSVA 320
Query: 165 DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAV 224
D SS K S+INLVDLAGSER T A +R KE NIN SL LG +I L++ S
Sbjct: 321 DGLSSF--KTSRINLVDLAGSERQKLTGAAGDRLKEAGNINRSLSQLGNLINILAEISQT 378
Query: 225 P-----PYRNSTLTYLLK 237
PYR+S LT+LL+
Sbjct: 379 GKQRHIPYRDSRLTFLLQ 396
Score = 30.3 bits (68), Expect = 1.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
M+ I+P QS E+ +TLR+A +A+ I K NE
Sbjct: 407 MVCAISPSQSCKSETFSTLRFAQRAKAIKNKAVVNE 442
>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain. These
ATPases belong to the P-loop NTPase family and provide
the driving force in myosin and kinesin mediated
processes.
Length = 186
Score = 109 bits (275), Expect = 5e-30
Identities = 52/108 (48%), Positives = 67/108 (62%), Gaps = 1/108 (0%)
Query: 131 LSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQ-KCSQINLVDLAGSERVA 189
+ +GN R TA+T MN+ SSRSHS+F+I S+ Q K +INLVDLAGSER+
Sbjct: 62 MDKGNANRTTAATAMNEHSSRSHSVFRIHFGGKNALASATEQPKVGKINLVDLAGSERID 121
Query: 190 QTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
+ A R E NIN SL TLG VI+ L++ + PYR S LT LL+
Sbjct: 122 FSGAEGSRLTETANINKSLSTLGNVISALAERDSHVPYRESKLTRLLQ 169
>gnl|CDD|181362 PRK08296, PRK08296, hypothetical protein; Provisional.
Length = 603
Score = 31.9 bits (73), Expect = 0.26
Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 15/85 (17%)
Query: 62 FCHQLFDQIP----SNMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLS 117
FC QLF IP + MVA + + +E +R A E IF S S
Sbjct: 207 FCKQLFPDIPDQHITEMVAGIDVIMFRPDDEL-------KRLARLAVELGIADIFASGDS 259
Query: 118 VHGV----SSFSEMQKWLSEGNKAR 138
+ + ++WL+E +A+
Sbjct: 260 PQEIEAALARSPGGREWLAEWEEAK 284
>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32
(Rab32). Rab38/Rab32 subfamily. Rab32 and Rab38 are
members of the Rab family of small GTPases. Human Rab32
was first identified in platelets but it is expressed
in a variety of cell types, where it functions as an
A-kinase anchoring protein (AKAP). Rab38 has been shown
to be melanocyte-specific. GTPase activating proteins
(GAPs) interact with GTP-bound Rab and accelerate the
hydrolysis of GTP to GDP. Guanine nucleotide exchange
factors (GEFs) interact with GDP-bound Rabs to promote
the formation of the GTP-bound state. Rabs are further
regulated by guanine nucleotide dissociation inhibitors
(GDIs), which facilitate Rab recycling by masking
C-terminal lipid binding and promoting cytosolic
localization. Most Rab GTPases contain a lipid
modification site at the C-terminus, with sequence
motifs CC, CXC, or CCX. Lipid binding is essential for
membrane attachment, a key feature of most Rab
proteins.
Length = 201
Score = 28.4 bits (64), Expect = 2.5
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 56 TGIIPRFCHQLFDQ 69
T II R+ H +F Q
Sbjct: 14 TSIIKRYVHGVFSQ 27
>gnl|CDD|238066 cd00119, LYZ1, C-type lysozyme (1, 4-beta-N-acetylmuramidase, LYZ)
and alpha-lactalbumin (lactose synthase B protein, LA).
They have a close evolutionary relationship and similar
tertiary structure, however, functionally they are quite
different. Lysozymes have primarily bacteriolytic
function; hydrolysis of peptidoglycan of prokaryotic
cell walls and transglycosylation. LA is a
calcium-binding metalloprotein that is expressed
exclusively in the mammary gland during lactation. LA is
the regulatory subunit of the enzyme lactose synthase.
The association of LA with the catalytic component of
lactose synthase, galactosyltransferase, alters the
acceptor substrate specificity of this
glycosyltransferase, facilitating biosynthesis of
lactose.
Length = 123
Score = 27.6 bits (62), Expect = 3.2
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 140 TASTNMNDKSSRSHSIFQI 158
T + N N+ S + +FQI
Sbjct: 38 TQAVNNNNDGSTDYGLFQI 56
>gnl|CDD|219333 pfam07208, DUF1414, Protein of unknown function (DUF1414). This
family consists of several hypothetical bacterial
proteins of around 70 residues in length. Members of
this family are often referred to as YejL. The function
of this family is unknown.
Length = 44
Score = 24.9 bits (55), Expect = 6.3
Identities = 8/13 (61%), Positives = 11/13 (84%)
Query: 206 LSLMTLGQVITNL 218
LSLM LG ++TN+
Sbjct: 7 LSLMVLGNMVTNI 19
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 27.7 bits (61), Expect = 6.4
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 65 QLFDQIPSNMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFV 113
Q+ + +P V V+ SY IYN Y +L R A++ + P T I +
Sbjct: 946 QVKNMLPPYFVFVVECSYNAIYNNITYTILEGIRYAVQNVKCPQTKIAI 994
>gnl|CDD|214359 CHL00085, ycf24, putative ABC transporter.
Length = 485
Score = 27.3 bits (61), Expect = 9.1
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 4/41 (9%)
Query: 31 KIGTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIP 71
KIG E +F+F G NL+ ++ + +I FC +F+++P
Sbjct: 429 KIG-EEQLFYFLQRGINLEEAI---SLLISGFCKDVFNKLP 465
>gnl|CDD|225144 COG2235, ArcA, Arginine deiminase [Amino acid transport and
metabolism].
Length = 409
Score = 26.9 bits (60), Expect = 9.5
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 28/112 (25%)
Query: 53 KETTGIIPRFCHQ-LFDQIPSNMVAQ--------------VKISYLEIYNEFVYDLLS-S 96
E + PR LFD +P AQ +++ YLE DLL+ +
Sbjct: 24 IEIERLTPRNLDDLLFDDVPYLEKAQKEHDTFAQILREQGIEVLYLE-------DLLAET 76
Query: 97 ERKALKVRESPDTGI--FVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMN 146
KA R I ++ + + G + E++ +L +K + S ++
Sbjct: 77 LDKANAARNQ---FIETYLDEAEIKGTGTADEVRAYLLSLDKNKELISVLIS 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.129 0.352
Gapped
Lambda K H
0.267 0.0794 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,239,781
Number of extensions: 995626
Number of successful extensions: 828
Number of sequences better than 10.0: 1
Number of HSP's gapped: 768
Number of HSP's successfully gapped: 46
Length of query: 237
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 143
Effective length of database: 6,768,326
Effective search space: 967870618
Effective search space used: 967870618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (25.6 bits)