RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17371
(237 letters)
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha
and beta protein, enzyme, ATPase, P-loop, motor protein,
ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus}
SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A*
2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C*
1ia0_K* 2hxh_C*
Length = 366
Score = 270 bits (694), Expect = 7e-91
Identities = 94/216 (43%), Positives = 129/216 (59%), Gaps = 23/216 (10%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLLSS 96
++MMG + GIIP+ C LF +I NM V++SY+EIY E V DLL+
Sbjct: 105 YTMMGKQEK----DQQGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLNP 160
Query: 97 ERKA-LKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSI 155
+ K L+VRE P G +V DLS V+S++++Q + GNK R A+TNMN+ SSRSH++
Sbjct: 161 KNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHAV 220
Query: 156 FQIQLT--LTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQ 213
F I T + + T+K S+I+LVDLAGSER T A R KEG NIN SL TLG+
Sbjct: 221 FNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLGK 280
Query: 214 VITNLSDHSAVP------------PYRNSTLTYLLK 237
VI+ L++ + P PYR+S LT+LL+
Sbjct: 281 VISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 316
Score = 42.6 bits (101), Expect = 5e-05
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+A ++P + +E+L+TLRYA +A+ I
Sbjct: 327 MVAALSPADINYDETLSTLRYADRAKQI 354
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, ATP-binding,
microtubule, motor protein; HET: ADP; 2.10A {Homo
sapiens}
Length = 354
Score = 269 bits (690), Expect = 2e-90
Identities = 94/211 (44%), Positives = 131/211 (62%), Gaps = 20/211 (9%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLL-- 94
++MMG + G+IPR C LF++ +V++SY+EIYNE V DLL
Sbjct: 108 YTMMGTA------DQPGLIPRLCSGLFERTQKEENEEQSFKVEVSYMEIYNEKVRDLLDP 161
Query: 95 SSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHS 154
R+ LKVRE G +V LS V+S+ +++ +SEGNK+R A+TNMN++SSRSH+
Sbjct: 162 KGSRQTLKVREHSVLGPYVDGLSKLAVTSYKDIESLMSEGNKSRTVAATNMNEESSRSHA 221
Query: 155 IFQIQLT--LTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLG 212
+F+I LT L + + +K +++LVDLAGSER +T A +R KEG NIN SL TLG
Sbjct: 222 VFKITLTHTLYDVKSGTSGEKVGKLSLVDLAGSERATKTGAAGDRLKEGSNINKSLTTLG 281
Query: 213 QVITNLSDHSAVP------PYRNSTLTYLLK 237
VI+ L+D SA PYR+S LT+LLK
Sbjct: 282 LVISALADQSAGKNKNKFVPYRDSVLTWLLK 312
Score = 42.9 bits (102), Expect = 4e-05
Identities = 12/28 (42%), Positives = 22/28 (78%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+AT++P + +E+L+TLRYA +A++
Sbjct: 323 MVATVSPAADNYDETLSTLRYADRAKHH 350
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor
domain, ADP, SGC, ATP-binding, coiled coil, microtubule,
motor protein; HET: ADP; 1.80A {Homo sapiens} PDB:
3b6v_A*
Length = 372
Score = 267 bits (685), Expect = 2e-89
Identities = 86/202 (42%), Positives = 118/202 (58%), Gaps = 8/202 (3%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIP--SNMVAQVKISYLEIYNEFVYDLLSSER 98
++M G D + G+IP +F I N V+ SYLEIY E + DLLS ++
Sbjct: 117 YTMEGIRGDPEKR---GVIPNSFDHIFTHISRSQNQQYLVRASYLEIYQEEIRDLLSKDQ 173
Query: 99 KA-LKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
L+++E PDTG++V DLS S E++ ++ GN+ R+ +TNMN+ SSRSH+IF
Sbjct: 174 TKRLELKERPDTGVYVKDLSSFVTKSVKEIEHVMNVGNQNRSVGATNMNEHSSRSHAIFV 233
Query: 158 IQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVIT 216
I + +E + ++NLVDLAGSER A+T A ER KE INLSL LG VI+
Sbjct: 234 ITIECSEVGLDGENHIRVGKLNLVDLAGSERQAKTGAQGERLKEATKINLSLSALGNVIS 293
Query: 217 NLSD-HSAVPPYRNSTLTYLLK 237
L D S PYR+S LT LL+
Sbjct: 294 ALVDGKSTHIPYRDSKLTRLLQ 315
Score = 41.8 bits (99), Expect = 1e-04
Identities = 14/28 (50%), Positives = 21/28 (75%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+A + P ++EE+L TLRYA +A+NI
Sbjct: 326 MVANVGPASYNVEETLTTLRYANRAKNI 353
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule,
ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Length = 350
Score = 266 bits (683), Expect = 2e-89
Identities = 84/200 (42%), Positives = 117/200 (58%), Gaps = 10/200 (5%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSSE 97
++M G+ KE G IP LFD I SN V SYLE+YNE + DL+ +
Sbjct: 105 WTMGGN------KEEPGAIPNSFKHLFDAINSSSSNQNFLVIGSYLELYNEEIRDLIKNN 158
Query: 98 RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
K L ++E GI+V LS+H V++ +E+ + +G R A+T MND SSRSHSIF
Sbjct: 159 TK-LPLKEDKTRGIYVDGLSMHRVTTAAELSALMDKGFANRHVAATQMNDTSSRSHSIFM 217
Query: 158 IQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITN 217
+++ +E + + ++NLVDLAGSER ++T AT E EG INLSL LG VI+
Sbjct: 218 VRIECSEVIENKEVIRVGKLNLVDLAGSERQSKTGATGETLVEGAKINLSLSALGLVISK 277
Query: 218 LSDHSAVPPYRNSTLTYLLK 237
L + + PYR+S LT LL+
Sbjct: 278 LVEGATHIPYRDSKLTRLLQ 297
Score = 40.7 bits (96), Expect = 2e-04
Identities = 15/36 (41%), Positives = 24/36 (66%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
M A I+P ++ +E+++TLRYA +A+ I K NE
Sbjct: 308 MCANISPASTNYDETMSTLRYADRAKQIKNKPRINE 343
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP;
1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A*
2kin_A* 3kin_A*
Length = 325
Score = 264 bits (677), Expect = 7e-89
Identities = 73/200 (36%), Positives = 102/200 (51%), Gaps = 8/200 (4%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSSE 97
+M G D GIIPR +F+ I N+ +K+SY EIY + + DLL
Sbjct: 93 HTMEGKLHDPEGM---GIIPRIVQDIFNYIYSMDENLEFHIKVSYFEIYLDKIRDLLDVS 149
Query: 98 RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
+ L V E + +V + V S E+ + EG R A TNMN+ SSRSHSIF
Sbjct: 150 KTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVTNMNEHSSRSHSIFL 209
Query: 158 IQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITN 217
I + ++ LVDLAGSE+V++T A E +NIN SL LG VI+
Sbjct: 210 INVKQENTQTEQK--LSGKLYLVDLAGSEKVSKTGAEGAVLDEAKNINKSLSALGNVISA 267
Query: 218 LSDHSAVPPYRNSTLTYLLK 237
L++ S PYR+S +T +L+
Sbjct: 268 LAEGSTYVPYRDSKMTRILQ 287
Score = 40.6 bits (96), Expect = 2e-04
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
++ +P + E+ +TL + +A+ I
Sbjct: 298 IVICCSPSSYNESETKSTLLFGQRAKTI 325
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A
{Neurospora crassa} SCOP: c.37.1.9
Length = 355
Score = 264 bits (677), Expect = 2e-88
Identities = 84/201 (41%), Positives = 120/201 (59%), Gaps = 8/201 (3%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSSE 97
++MMG ++D + G+IPR Q+F I +N+ V++SY+EIY E + DLL+ +
Sbjct: 96 YTMMGTSIDDP--DGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQ 153
Query: 98 RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
L V E + G++V L VSS E+ + + G ARA A+TNMN +SSRSHSIF
Sbjct: 154 NDNLPVHEEKNRGVYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFV 213
Query: 158 IQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITN 217
I +T S K Q+ LVDLAGSE+V +T A+ + +E + IN SL LG VI
Sbjct: 214 ITITQKNVETGSA--KSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINA 271
Query: 218 LSD-HSAVPPYRNSTLTYLLK 237
L+D S+ PYR+S LT +L+
Sbjct: 272 LTDGKSSHVPYRDSKLTRILQ 292
Score = 41.0 bits (97), Expect = 2e-04
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ +P + E+L+TLR+ ++A++I K N
Sbjct: 303 LIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNA 338
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain,
ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora
crassa}
Length = 443
Score = 265 bits (679), Expect = 1e-87
Identities = 93/232 (40%), Positives = 122/232 (52%), Gaps = 41/232 (17%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI------PSNMVAQVKISYLEIYNEFVYDLL 94
++MMG + G+IPR C LF +I N+ VK+SY E+YNE V DLL
Sbjct: 152 YTMMGT------PDQPGLIPRTCEDLFQRIASAQDETPNISYNVKVSYFEVYNEHVRDLL 205
Query: 95 SSERKA-----LKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKS 149
+ LKVRESP G +V DL+ V E+ +W+ G+ +R AST MND S
Sbjct: 206 APVVPNKPPYYLKVRESPTEGPYVKDLTEVPVRGLEEIIRWMRIGDGSRTVASTKMNDTS 265
Query: 150 SRSHSIFQIQLTLTE--DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLS 207
SRSH++F I L T++ S+I LVDLAGSER T+AT +R +EG NIN S
Sbjct: 266 SRSHAVFTIMLKQIHHDLETDDTTERSSRIRLVDLAGSERAKSTEATGQRLREGSNINKS 325
Query: 208 LMTLGQVITNLSDHSAVP----------------------PYRNSTLTYLLK 237
L TLG+VI L+D + PYR+S LT+LLK
Sbjct: 326 LTTLGRVIAALADPKSSASRPSSPVKSGRGRTPGPANSVVPYRDSVLTWLLK 377
Score = 40.8 bits (96), Expect = 2e-04
Identities = 14/28 (50%), Positives = 21/28 (75%), Gaps = 2/28 (7%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+A I+P + +E+L+TLRYA QA+ I
Sbjct: 388 MIACISP--TDYDETLSTLRYADQAKRI 413
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain;
HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A*
Length = 344
Score = 259 bits (665), Expect = 9e-87
Identities = 72/210 (34%), Positives = 108/210 (51%), Gaps = 13/210 (6%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI--PSNMVAQVKISYLEIYNEFVYDLLSSE- 97
++M ++ S L++ GI+PR + F I + V +SYLE+Y E DLL
Sbjct: 99 YTMGEASVASLLEDEQGIVPRAMAEAFKLIDENDLLDCLVHVSYLEVYKEEFRDLLEVGT 158
Query: 98 -RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIF 156
+ +++RE + + + V E+ L GN AR T +T++N SSRSH++F
Sbjct: 159 ASRDIQLREDERGNVVLCGVKEVDVEGLDEVLSLLEMGNAARHTGATHLNHLSSRSHTVF 218
Query: 157 QIQLTLTEDTGSSVTQ------KCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMT 210
+ L S + + S+ + VDLAGSERV +T +T ER KE IN SL+
Sbjct: 219 TVTLEQRGRAPSRLPRPAPGQLLVSKFHFVDLAGSERVLKTGSTGERLKESIQINSSLLA 278
Query: 211 LGQVITNLSDHSAVP---PYRNSTLTYLLK 237
LG VI+ L D PYR+S +T +LK
Sbjct: 279 LGNVISALGDPQRRGSHIPYRDSKITRILK 308
Score = 35.6 bits (83), Expect = 0.009
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 1 MLATINPLQSHIEESLATLRYALQAR 26
M+A ++P S +E+L TL YA +A+
Sbjct: 319 MIACVSPSSSDFDETLNTLNYASRAQ 344
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP
complex, stranded beta-sheet core with solvent exposed
alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Length = 349
Score = 259 bits (664), Expect = 2e-86
Identities = 84/206 (40%), Positives = 119/206 (57%), Gaps = 15/206 (7%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIPSNMVAQ--VKISYLEIYNEFVYDLL--SS 96
++MMG + G+IPR H +F +I + +++SY+EIYNE + DLL +
Sbjct: 93 YTMMGSE------DHLGVIPRAIHDIFQKIKKFPDREFLLRVSYMEIYNETITDLLCGTQ 146
Query: 97 ERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIF 156
+ K L +RE + ++V+DL+ V + KW+++G K+R T MN +SSRSH+IF
Sbjct: 147 KMKPLIIREDVNRNVYVADLTEEVVYTSEMALKWITKGEKSRHYGETKMNQRSSRSHTIF 206
Query: 157 QIQLT---LTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQ 213
++ L E + + K S +NLVDLAGSER AQT A R KEG NIN SL LGQ
Sbjct: 207 RMILESREKGEPSNCEGSVKVSHLNLVDLAGSERAAQTGAAGVRLKEGCNINRSLFILGQ 266
Query: 214 VITNLSDHSAVP--PYRNSTLTYLLK 237
VI LSD YR+S LT +L+
Sbjct: 267 VIKKLSDGQVGGFINYRDSKLTRILQ 292
Score = 40.6 bits (96), Expect = 2e-04
Identities = 10/36 (27%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ TI P +E+L L++A A+ + NE
Sbjct: 303 IICTITP--VSFDETLTALQFASTAKYMKNTPYVNE 336
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural
genomics consortium domain, ADP, SGC, ATP-binding,
DNA-binding, microtubule, MO protein; HET: ADP; 2.30A
{Homo sapiens}
Length = 388
Score = 260 bits (666), Expect = 3e-86
Identities = 66/203 (32%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI------PSNMVAQVKISYLEIYNEFVYDLL 94
+M+G E G+IPR L V +SYLEIY E V DLL
Sbjct: 114 HTMLGSP------EQPGVIPRALMDLLQLTREEGAEGRPWALSVTMSYLEIYQEKVLDLL 167
Query: 95 SSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHS 154
L +RE I + LS +SSF++ ++ ++ R +T +N +SSRSH+
Sbjct: 168 DPASGDLVIREDCRGNILIPGLSQKPISSFADFERHFLPASRNRTVGATRLNQRSSRSHA 227
Query: 155 IFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQV 214
+ +++ E Q+ ++ L+DLAGSE +T R KE IN SL LG+V
Sbjct: 228 VLLVKVDQRERLAPF-RQREGKLYLIDLAGSEDNRRTGNKGLRLKESGAINTSLFVLGKV 286
Query: 215 ITNLSDHSAVPPYRNSTLTYLLK 237
+ L+ PYR+S LT LL+
Sbjct: 287 VDALNQGLPRVPYRDSKLTRLLQ 309
Score = 41.5 bits (98), Expect = 1e-04
Identities = 8/36 (22%), Positives = 21/36 (58%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++A I P + ++++ L +A +++ + + TNE
Sbjct: 320 LIANIAPERRFYLDTVSALNFAARSKEVINRPFTNE 355
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A
{Drosophila melanogaster} PDB: 2y5w_A*
Length = 365
Score = 258 bits (661), Expect = 8e-86
Identities = 74/201 (36%), Positives = 107/201 (53%), Gaps = 9/201 (4%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSSE 97
+M G DS + GIIPR + +F+ I N+ +K+SY EIY + + DLL
Sbjct: 100 HTMEGVIGDSVKQ---GIIPRIVNDIFNHIYAMEVNLEFHIKVSYYEIYMDKIRDLLDVS 156
Query: 98 RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
+ L V E + +V + VSS ++ + + EG R A TNMN+ SSRSHS+F
Sbjct: 157 KVNLSVHEDKNRVPYVKGATERFVSSPEDVFEVIEEGKSNRHIAVTNMNEHSSRSHSVFL 216
Query: 158 IQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITN 217
I + ++ LVDLAGSE+V++T A E +NIN SL LG VI+
Sbjct: 217 INVKQENLENQKK--LSGKLYLVDLAGSEKVSKTGAEGTVLDEAKNINKSLSALGNVISA 274
Query: 218 LSD-HSAVPPYRNSTLTYLLK 237
L+D + PYR+S LT +L+
Sbjct: 275 LADGNKTHIPYRDSKLTRILQ 295
Score = 40.7 bits (96), Expect = 2e-04
Identities = 5/28 (17%), Positives = 15/28 (53%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
++ +P + E+ +TL + +A+ +
Sbjct: 306 IVICCSPASFNESETKSTLDFGRRAKTV 333
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics,
structural genomics consortium, SGC, contractIle
protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Length = 358
Score = 255 bits (653), Expect = 9e-85
Identities = 80/206 (38%), Positives = 105/206 (50%), Gaps = 13/206 (6%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQIP--SNMVAQVKISYLEIYNEFVYDLLSS-- 96
++MMG + + GI+PR Q+F I V++SYLEIYNE ++DLLS+
Sbjct: 119 YTMMGATENYKHR---GILPRALQQVFRMIEERPTHAITVRVSYLEIYNESLFDLLSTLP 175
Query: 97 ----ERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRS 152
+ + E+P G+F+ LSVH S + L EG R AS MN SSRS
Sbjct: 176 YVGPSVTPMTIVENPQ-GVFIKGLSVHLTSQEEDAFSLLFEGETNRIIASHTMNKNSSRS 234
Query: 153 HSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLG 212
H IF I L T S S+INLVDLAGSER+ ++ + + KE IN SL L
Sbjct: 235 HCIFTIYLEAHSRTLSEEKYITSKINLVDLAGSERLGKSGSEGQVLKEATYINKSLSFLE 294
Query: 213 QVITNLSDHSAV-PPYRNSTLTYLLK 237
Q I L D P+R LT+ LK
Sbjct: 295 QAIIALGDQKRDHIPFRQCKLTHALK 320
Score = 41.5 bits (98), Expect = 1e-04
Identities = 7/28 (25%), Positives = 18/28 (64%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
++ I + +EE+L++LR+A + + +
Sbjct: 331 LVTNIYGEAAQLEETLSSLRFASRMKLV 358
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding,
microtubule binding, ATP- cell projection, cytoskeleton,
glycoprotein, microtubule; HET: ADP; 2.20A {Homo
sapiens}
Length = 355
Score = 254 bits (651), Expect = 2e-84
Identities = 75/204 (36%), Positives = 107/204 (52%), Gaps = 14/204 (6%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSSE 97
+M+G + G++ L+ + + +SYLE+YNE + DLL +
Sbjct: 121 HTMLGS------ADEPGVMYLTMLHLYKCMDEIKEEKICSTAVSYLEVYNEQIRDLLVNS 174
Query: 98 RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
L VRE G+ V L++H S E+ L GNK R T+MN SSRSH++FQ
Sbjct: 175 GP-LAVREDTQKGVVVHGLTLHQPKSSEEILHLLDNGNKNRTQHPTDMNATSSRSHAVFQ 233
Query: 158 IQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVIT 216
I L + + + ++++L+DLAGSER + + A RF EG NIN SL+ LG VI
Sbjct: 234 IYLRQQDKTASINQNVRIAKMSLIDLAGSERASTSGAKGTRFVEGTNINRSLLALGNVIN 293
Query: 217 NLSD---HSAVPPYRNSTLTYLLK 237
L+D + PYRNS LT LLK
Sbjct: 294 ALADSKRKNQHIPYRNSKLTRLLK 317
Score = 41.9 bits (99), Expect = 9e-05
Identities = 9/28 (32%), Positives = 19/28 (67%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+A ++P +++ TL+YA +A++I
Sbjct: 328 MIAAVSPSSVFYDDTYNTLKYANRAKDI 355
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule,
ADP, nucleotide-binding protein, ATP-binding, coiled
coil, motor protein; HET: ADP; 1.90A {Drosophila
melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Length = 344
Score = 253 bits (648), Expect = 4e-84
Identities = 64/202 (31%), Positives = 98/202 (48%), Gaps = 19/202 (9%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI-----PSNMVAQVKISYLEIYNEFVYDLLS 95
+SM L E GI+PR +F+++ + QV S++EIYNE +DLL
Sbjct: 110 YSMGMTPPGEILPEHLGILPRALGDIFERVTARQENNKDAIQVYASFIEIYNEKPFDLLG 169
Query: 96 SERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSI 155
S P + + S +++ L G + R TNMN SSRSH+I
Sbjct: 170 STP------HMPMVAARCQRCTCLPLHSQADLHHILELGTRNRRVRPTNMNSNSSRSHAI 223
Query: 156 FQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVI 215
I + S++N+VDLAGSE V +T +EG NINL L+++ +V+
Sbjct: 224 VTIHVKSKT--------HHSRMNIVDLAGSEGVRRTGHEGVARQEGVNINLGLLSINKVV 275
Query: 216 TNLSDHSAVPPYRNSTLTYLLK 237
+++ V PYR+S LT +L+
Sbjct: 276 MSMAAGHTVIPYRDSVLTTVLQ 297
Score = 41.4 bits (98), Expect = 1e-04
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
LA I+P Q + E+L+TLR+ A+
Sbjct: 308 FLACISPHQCDLSETLSTLRFGTSAKAA 335
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker,
cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP:
c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A*
2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A*
2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A*
1q0b_A* ...
Length = 359
Score = 252 bits (645), Expect = 2e-83
Identities = 78/209 (37%), Positives = 117/209 (55%), Gaps = 12/209 (5%)
Query: 41 FSMMGDNLD-----SSLKETTGIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLL 94
F+M G+ GIIPR HQ+F+++ N VK+S LEIYNE ++DLL
Sbjct: 104 FTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFEKLTDNGTEFSVKVSLLEIYNEELFDLL 163
Query: 95 SSER---KALKVRESPDT--GIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKS 149
+ + L++ + P G+ + L V + E+ + L +G R TA+T MN S
Sbjct: 164 NPSSDVSERLQMFDDPRNKRGVIIKGLEEITVHNKDEVYQILEKGAAKRTTAATLMNAYS 223
Query: 150 SRSHSIFQIQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSL 208
SRSHS+F + + + E K ++NLVDLAGSE + ++ A ++R +E NIN SL
Sbjct: 224 SRSHSVFSVTIHMKETTIDGEELVKIGKLNLVDLAGSENIGRSGAVDKRAREAGNINQSL 283
Query: 209 MTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
+TLG+VIT L + + PYR S LT +L+
Sbjct: 284 LTLGRVITALVERTPHVPYRESKLTRILQ 312
Score = 41.8 bits (99), Expect = 1e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
++ATI+P ++EE+L+TL YA +A+NI
Sbjct: 323 IIATISPASLNLEETLSTLEYAHRAKNI 350
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics,
structural genomics consortium, SGC, structural protein;
HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Length = 387
Score = 242 bits (619), Expect = 3e-79
Identities = 62/202 (30%), Positives = 99/202 (49%), Gaps = 13/202 (6%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLLSS 96
+M GD + + GI +F + +V +++ EIYN ++DLL+
Sbjct: 150 HTMGGDLSGKAQNASKGIYAMASRDVFLLKNQPCYRKLGLEVYVTFFEIYNGKLFDLLN- 208
Query: 97 ERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIF 156
++ L+V E + V L H V+S ++ K + G+ R + T N SSRSH+ F
Sbjct: 209 KKAKLRVLEDGKQQVQVVGLQEHLVNSADDVIKMIDMGSACRTSGQTFANSNSSRSHACF 268
Query: 157 QIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFK-EGRNINLSLMTLGQVI 215
QI L + + +LVDLAG+ER A T + + + + EG IN SL+ L + I
Sbjct: 269 QIILRAKG-------RMHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECI 321
Query: 216 TNLSDHSAVPPYRNSTLTYLLK 237
L + A P+R S LT +L+
Sbjct: 322 RALGQNKAHTPFRESKLTQVLR 343
Score = 40.7 bits (96), Expect = 2e-04
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+ATI+P S E +L TLRYA + + +
Sbjct: 355 MIATISPGISSCEYTLNTLRYADRVKEL 382
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis,
GTP-binding, motor protein, cell division, cell cycle,
microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A
{Drosophila melanogaster}
Length = 373
Score = 241 bits (618), Expect = 3e-79
Identities = 77/208 (37%), Positives = 112/208 (53%), Gaps = 11/208 (5%)
Query: 41 FSMMGD-----NLDSSLKETTGIIPRFCHQLFDQIPSNMVA-QVKISYLEIYNEFVYDLL 94
+M+G+ GIIPR LFD++ V ++ISYLE+YNE + DLL
Sbjct: 116 HTMVGNETAELKSSWEDDSDIGIIPRALSHLFDELRMMEVEYTMRISYLELYNEELCDLL 175
Query: 95 SSERKA---LKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSR 151
S++ + + + + L V S ++ K L +G + R TA+T MN +SSR
Sbjct: 176 STDDTTKIRIFDDSTKKGSVIIQGLEEIPVHSKDDVYKLLEKGKERRKTATTLMNAQSSR 235
Query: 152 SHSIFQIQLTLTEDTGSSVTQ-KCSQINLVDLAGSERVAQT-KATEERFKEGRNINLSLM 209
SH++F I + + E+ K ++NLVDLAGSE V++ R +E NIN SL+
Sbjct: 236 SHTVFSIVVHIRENGIEGEDMLKIGKLNLVDLAGSENVSKAGNEKGIRVRETVNINQSLL 295
Query: 210 TLGQVITNLSDHSAVPPYRNSTLTYLLK 237
TLG+VIT L D + PYR S LT LL+
Sbjct: 296 TLGRVITALVDRAPHVPYRESKLTRLLQ 323
Score = 41.1 bits (97), Expect = 2e-04
Identities = 15/28 (53%), Positives = 22/28 (78%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
++ATI+P IEE+L+TL YA +A+NI
Sbjct: 334 IIATISPGHKDIEETLSTLEYAHRAKNI 361
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P;
HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB:
1v8j_A* 2gry_A*
Length = 410
Score = 242 bits (621), Expect = 3e-79
Identities = 63/202 (31%), Positives = 100/202 (49%), Gaps = 13/202 (6%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLLSS 96
+M GD S + GI +F N+ +V +++ EIYN V+DLL+
Sbjct: 170 HTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDLLN- 228
Query: 97 ERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIF 156
++ L+V E + V L + V+ ++ K ++ G+ R + T N SSRSH+ F
Sbjct: 229 KKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHACF 288
Query: 157 QIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFK-EGRNINLSLMTLGQVI 215
QI L + + +LVDLAG+ER A T + + + + EG IN SL+ L + I
Sbjct: 289 QILLRTKG-------RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKECI 341
Query: 216 TNLSDHSAVPPYRNSTLTYLLK 237
L + A P+R S LT +L+
Sbjct: 342 RALGQNKAHTPFRESKLTQVLR 363
Score = 40.7 bits (96), Expect = 2e-04
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTN 35
M+A I+P S E +L TLRYA + + + +
Sbjct: 375 MIAMISPGISSCEYTLNTLRYADRVKELSHHHHHH 409
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11,
conformation, nucleotide, ATP-binding, microtubule,
motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP:
c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Length = 369
Score = 239 bits (611), Expect = 3e-78
Identities = 60/203 (29%), Positives = 106/203 (52%), Gaps = 14/203 (6%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSSE 97
F++ G + G+ PR +LF + + +K +E+Y + + DLL +
Sbjct: 95 FTIYGAD------SNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPK 148
Query: 98 ---RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHS 154
R L +++ + V +++V +S++ E++ + G++ R T T MN++SSRSH
Sbjct: 149 QAKRLKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHL 208
Query: 155 IFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQV 214
I + + T ++ +++ VDLAGSERV ++ + + KE ++IN SL LG V
Sbjct: 209 IVSVIIESTNLQTQAI--ARGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDV 266
Query: 215 ITNLSDHSAVPPYRNSTLTYLLK 237
I+ LS + PYRN LT L+
Sbjct: 267 ISALSSGNQHIPYRNHKLTMLMS 289
Score = 41.8 bits (99), Expect = 1e-04
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M I+P +S+++E+ +L YA + R+I
Sbjct: 300 MFVNISPAESNLDETHNSLTYASRVRSI 327
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport
protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Length = 360
Score = 233 bits (596), Expect = 4e-76
Identities = 59/201 (29%), Positives = 95/201 (47%), Gaps = 11/201 (5%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSSE 97
++M+G +T GI +F + + + IS+ EIY +YDLL +
Sbjct: 100 YTMLGSQPYGQ-SDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQ-K 157
Query: 98 RKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQ 157
RK + E+ + V DL + V + E+ + +G R + ND+SSRSH+I
Sbjct: 158 RKMVAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILN 217
Query: 158 IQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFK-EGRNINLSLMTLGQVIT 216
I L +I +DLAGSER A T + ++ + +G NIN SL+ L + I
Sbjct: 218 IDLKDINK-----NTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIR 272
Query: 217 NLSDHSAVPPYRNSTLTYLLK 237
+ P+R+S LT +L+
Sbjct: 273 AMDSDKNHIPFRDSELTKVLR 293
Score = 39.9 bits (94), Expect = 4e-04
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
M+A I+P S E++L TLRY+ + +N +
Sbjct: 304 MIANISPTISCCEQTLNTLRYSSRVKNKGNSKLEGK 339
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural
genomics, structur Al genomics consortium, SGC; HET:
ADP; 1.85A {Homo sapiens}
Length = 330
Score = 231 bits (592), Expect = 6e-76
Identities = 69/204 (33%), Positives = 104/204 (50%), Gaps = 16/204 (7%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLS-- 95
++M G E GI R LF ++ S+ + +S EIYNE + DLL
Sbjct: 96 YTMEGT------AENPGINQRALQLLFSEVQEKASDWEYTITVSAAEIYNEVLRDLLGKE 149
Query: 96 -SERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHS 154
E+ +++ ++V L+ V S ++ K G+ R T TN+N+ SSRSH+
Sbjct: 150 PQEKLEIRLCPDGSGQLYVPGLTEFQVQSVDDINKVFEFGHTNRTTEFTNLNEHSSRSHA 209
Query: 155 IFQIQLTLTE-DTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQ 213
+ + + + TG + ++NLVDLAGSERV ++ A R +E ++IN SL LG
Sbjct: 210 LLIVTVRGVDCSTGL---RTTGKLNLVDLAGSERVGKSGAEGSRLREAQHINKSLSALGD 266
Query: 214 VITNLSDHSAVPPYRNSTLTYLLK 237
VI L P+RNS LTYLL+
Sbjct: 267 VIAALRSRQGHVPFRNSKLTYLLQ 290
Score = 41.0 bits (97), Expect = 2e-04
Identities = 7/28 (25%), Positives = 20/28 (71%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+ ++P++ + E+L +L++A + R++
Sbjct: 301 MVVQVSPVEKNTSETLYSLKFAERVRSV 328
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor
domain, ADP, binding, cell cycle, cell division,
endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Length = 376
Score = 230 bits (589), Expect = 8e-75
Identities = 74/212 (34%), Positives = 105/212 (49%), Gaps = 19/212 (8%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLLSS 96
F+M G + G+IPR LF SY+EIYNE V DLL++
Sbjct: 131 FTMEGGPGGDP--QLEGLIPRALRHLFSVAQELSGQGWTYSFVASYVEIYNETVRDLLAT 188
Query: 97 ERKA-----LKVRESPD--TGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKS 149
+ ++R + + V++ VS E+ L + RA A T N++S
Sbjct: 189 GTRKGQGGECEIRRAGPGSEELTVTNARYVPVSCEKEVDALLHLARQNRAVARTAQNERS 248
Query: 150 SRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKAT----EERFKEGRNIN 205
SRSHS+FQ+Q++ + + ++LVDLAGSER+ A ER +E + IN
Sbjct: 249 SRSHSVFQLQISGEHSSRGLQCG--APLSLVDLAGSERLDPGLALGPGERERLRETQAIN 306
Query: 206 LSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
SL TLG VI LS+ + PYRNS LTYLL+
Sbjct: 307 SSLSTLGLVIMALSNKESHVPYRNSKLTYLLQ 338
Score = 38.0 bits (89), Expect = 0.002
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 1 MLATINPLQSHIEESLATLRYALQAR 26
M I+PL+ ++ ESL +LR+A +
Sbjct: 349 MFVNISPLEENVSESLNSLRFASKVN 374
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing
nucleosi triphosphate hydrolases, microtubule motor
protein; HET: ADP; 2.35A {Ashbya gossypii}
Length = 349
Score = 225 bits (577), Expect = 2e-73
Identities = 66/216 (30%), Positives = 108/216 (50%), Gaps = 29/216 (13%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLLSS 96
++M+ G+IP +F +++ Y+EIYNE + DLL
Sbjct: 101 YTMLNAG--------DGMIPMTLSHIFKWTANLKERGWNYEMECEYIEIYNETILDLLRD 152
Query: 97 ERKALKV------------RESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTN 144
+ + + G ++++++ ++S S++ L + +K R+TA+T
Sbjct: 153 FKSHDNIDEILDSQKHDIRHDHEKQGTYITNVTRMKMTSTSQVDTILKKASKMRSTAATR 212
Query: 145 MNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNI 204
N++SSRSHS+F + + +Q ++NLVDLAGSER+ + T ER +E +NI
Sbjct: 213 SNERSSRSHSVFMVHINGRNLHTGETSQ--GKLNLVDLAGSERINSSAVTGERLRETQNI 270
Query: 205 NLSLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
N SL LG VI L+ A P+RNS LTYLL+
Sbjct: 271 NKSLSCLGDVIYALNTPDAGKRYIPFRNSKLTYLLQ 306
Score = 41.4 bits (98), Expect = 1e-04
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M I P +HI E+L +LR+A + +
Sbjct: 317 MFVNIPPDPNHISETLNSLRFASKVNST 344
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein,
microtubinding proteinbule, contractIle protein; HET:
ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9
PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Length = 347
Score = 224 bits (572), Expect = 1e-72
Identities = 70/214 (32%), Positives = 107/214 (50%), Gaps = 27/214 (12%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLLSS 96
F+M+ GIIP +F+ I +V ++EIYNE + DLL S
Sbjct: 100 FTMLNPG--------DGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNENIVDLLRS 151
Query: 97 ERKA---------LKVRESPDT-GIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMN 146
+ ++R +T +++++ + S ++ L + NK R+TAST N
Sbjct: 152 DNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRSTASTASN 211
Query: 147 DKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINL 206
+ SS SHSIF I L+ + + + +NLVDLAGSER+ ++ +R +E +NIN
Sbjct: 212 EHSSASHSIFIIHLSGSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDRLRETQNINK 269
Query: 207 SLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
SL LG VI L + P+RNS LTYLL+
Sbjct: 270 SLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 303
Score = 42.2 bits (100), Expect = 7e-05
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGT 34
M I+P SHI E+L +LR+A + + ++ +
Sbjct: 314 MFVNISPSSSHINETLNSLRFASKVNST--RLVS 345
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor
homology domain, karyog mitosis, microtubules; HET: ADP
EBC; 2.30A {Saccharomyces cerevisiae}
Length = 403
Score = 220 bits (562), Expect = 2e-70
Identities = 71/214 (33%), Positives = 108/214 (50%), Gaps = 27/214 (12%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLLSS 96
F+M+ GIIP +F+ I +V ++EIYNE + DLL S
Sbjct: 156 FTMLNPG--------DGIIPSTISHIFNWINKLKTKGWDYKVNAEFIEIYNENIVDLLRS 207
Query: 97 ERKA---------LKVRESPDT-GIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMN 146
+ ++R +T +++++ + S ++ L + NK R+TAST N
Sbjct: 208 DNNNKEDTSIGLKHEIRHDQETKTTTITNVTSVKLESEEMVEIILKKANKLRSTASTASN 267
Query: 147 DKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINL 206
+ SSRSHSIF I L+ + + + +NLVDLAGSER+ ++ +R +E +NIN
Sbjct: 268 EHSSRSHSIFIIHLSGSNAKTGAHSY--GTLNLVDLAGSERINVSQVVGDRLRETQNINK 325
Query: 207 SLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
SL LG VI L + P+RNS LTYLL+
Sbjct: 326 SLSALGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 359
Score = 41.5 bits (98), Expect = 1e-04
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGT 34
M I+P SHI E+L +LR+A + + ++ +
Sbjct: 370 MFVNISPSSSHINETLNSLRFASKVNST--RLVS 401
>3u06_A Protein claret segregational; motor domain, stalk rotation, power
stroke, kinesin-14, MICR binding, NCD, transport,
molecular motor; HET: ADP GOL; 2.35A {Drosophila
melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Length = 412
Score = 220 bits (562), Expect = 2e-70
Identities = 74/203 (36%), Positives = 108/203 (53%), Gaps = 18/203 (8%)
Query: 41 FSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLLSS 96
++M G E+ G+IPR LFD I ++K ++LEIYNE +YDLLS+
Sbjct: 154 YTMDGVP------ESVGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDLLSN 207
Query: 97 ERKALKVR--ESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHS 154
E+K +++R ++ I+VS+++ V + ++ + RATAST N++SSRSH+
Sbjct: 208 EQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSRSHA 267
Query: 155 IFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQV 214
+ +++L + INLVDLAGSE T R E +NIN SL L V
Sbjct: 268 VTKLELIGRHAEKQEI--SVGSINLVDLAGSESP----KTSTRMTETKNINRSLSELTNV 321
Query: 215 ITNLSDHSAVPPYRNSTLTYLLK 237
I L PYRNS LT+LL
Sbjct: 322 ILALLQKQDHIPYRNSKLTHLLM 344
Score = 41.1 bits (97), Expect = 2e-04
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGT 34
M ++P Q +ES+ +LR+A + K+
Sbjct: 355 MFINVSPFQDCFQESVKSLRFAASVNSC--KMTK 386
>2kin_B Kinesin; motor protein, cytoskeleton; HET: ADP; 2.00A {Rattus
norvegicus} SCOP: c.37.1.9
Length = 100
Score = 47.7 bits (114), Expect = 1e-07
Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 203 NINLSLMTLGQVITNLSDHSAV-PPYRNSTLTYLLK 237
NIN SL LG VI+ L++ + PYR+S +T +L+
Sbjct: 3 NINKSLSALGNVISALAEGTKTHVPYRDSKMTRILQ 38
Score = 41.1 bits (97), Expect = 3e-05
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ +P + E+ +TL + +A+ I + N
Sbjct: 49 IVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 84
>3kin_B Kinesin heavy chain; motor protein, cytoskeleton; HET: ADP; 3.10A
{Rattus norvegicus} SCOP: c.37.1.9
Length = 117
Score = 43.5 bits (103), Expect = 5e-06
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 205 NLSLMTLGQVITNLSDHSAV-PPYRNSTLTYLLK 237
N SL LG VI+ L++ + PYR+S +T +L+
Sbjct: 1 NKSLSALGNVISALAEGTKTHVPYRDSKMTRILQ 34
Score = 41.2 bits (97), Expect = 3e-05
Identities = 7/36 (19%), Positives = 17/36 (47%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ +P + E+ +TL + +A+ I + N
Sbjct: 45 IVICCSPSVFNEAETKSTLMFGQRAKTIKNTVSVNL 80
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 40.2 bits (93), Expect = 4e-04
Identities = 31/261 (11%), Positives = 71/261 (27%), Gaps = 96/261 (36%)
Query: 11 HIEESLATLRYALQARNIFEKIGTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQI 70
+++ ++I + E + H M D + +L+ LF +
Sbjct: 37 DVQDMP---------KSIL----SKEEIDHIIMSKDAVSGTLR------------LFWTL 71
Query: 71 ---PSNMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSV--HGVSSFS 125
MV + L I +F+ + +E++ S T +++ + F+
Sbjct: 72 LSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ----PSMMTRMYIEQRDRLYNDNQVFA 127
Query: 126 EMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTED-------------TGSSVTQ 172
+ R +++ L E +G +
Sbjct: 128 KYNVS--------------------RLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW-- 165
Query: 173 KCSQINLVDLAGSERVAQTKATEERFKEG----------------RNINLSLMTLGQVIT 216
+A V + + + + L + T
Sbjct: 166 ---------VALD--VCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 217 NLSDHSAVPPYRNSTLTYLLK 237
+ SDHS+ R ++ L+
Sbjct: 215 SRSDHSSNIKLRIHSIQAELR 235
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.004
Identities = 31/199 (15%), Positives = 57/199 (28%), Gaps = 73/199 (36%)
Query: 9 QSHIEESLATLRYALQARNIFEK--IGTNEFVFH---FSMMGDNLDSSLKETTGIIPRF- 62
S + + L L FE + N+ H ++ +N D++L +T +I +
Sbjct: 74 PSKVGQFDQVLNLCLTE---FENCYLEGNDI--HALAAKLLQEN-DTTLVKTKELIKNYI 127
Query: 63 ------------CHQ--LFDQIPSNMVAQVKI-----------SYLE-------IYNEFV 90
LF + ++ Y E Y+ V
Sbjct: 128 TARIMAKRPFDKKSNSALFRAVGEG---NAQLVAIFGGQGNTDDYFEELRDLYQTYHVLV 184
Query: 91 YDLLSSERKALK--VRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNK-------ARATA 141
DL+ + L +R + D + G+ + +WL +
Sbjct: 185 GDLIKFSAETLSELIRTTLDAEKVFT----QGL----NILEWLENPSNTPDKDYLLSIPI 236
Query: 142 STNMNDKSSRSHSIFQIQL 160
S + I IQL
Sbjct: 237 SCPL---------IGVIQL 246
Score = 33.5 bits (76), Expect = 0.063
Identities = 31/151 (20%), Positives = 56/151 (37%), Gaps = 55/151 (36%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKI------GTNEFV---FHFSMMGDNLDSS 51
ML+ N Q +++ + L A +++ G V S+ G L+ +
Sbjct: 338 MLSISNLTQEQVQDYVNKTNSHLPAG---KQVEISLVNGAKNLVVSGPPQSLYG--LNLT 392
Query: 52 L---KETTGI----IP------RFCHQLFDQI--P--SNMVAQVKISYLEIYNEFVY-DL 93
L K +G+ IP +F ++ F + P S L ++ + DL
Sbjct: 393 LRKAKAPSGLDQSRIPFSERKLKFSNR-FLPVASPFHS--------HLLVPASDLINKDL 443
Query: 94 LSSE----RKALKVRESP--DT--GIFVSDL 116
+ + K +++ P DT G SDL
Sbjct: 444 VKNNVSFNAKDIQI---PVYDTFDG---SDL 468
>2juz_A UPF0352 protein HI0840; homodimer, helix, structural genomics,
PSI-2, protein structure initiative; NMR {Haemophilus
influenzae} SCOP: a.284.1.1
Length = 80
Score = 27.5 bits (61), Expect = 1.3
Identities = 9/30 (30%), Positives = 14/30 (46%)
Query: 199 KEGRNINLSLMTLGQVITNLSDHSAVPPYR 228
K ++LSL+ LG + +NL S
Sbjct: 25 KHKAPVDLSLIALGNMASNLLTTSVPQTQC 54
>2juw_A UPF0352 protein SO_2176; homodimer, helix, dimer, all alpha,
northeast structural GEN consortium, NESG, structural
genomics; NMR {Shewanella oneidensis} SCOP: a.284.1.1
PDB: 2qti_A
Length = 80
Score = 27.1 bits (60), Expect = 1.3
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 199 KEGRNINLSLMTLGQVITNLSDHSAVPPYR 228
K +LSLM LG +T+L + R
Sbjct: 25 KHKAPTDLSLMALGNCVTHLLERKVPSESR 54
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 1.4
Identities = 5/20 (25%), Positives = 10/20 (50%), Gaps = 6/20 (30%)
Query: 97 ERKALKVRES------PDTG 110
E++ALK ++ D+
Sbjct: 18 EKQALKKLQASLKLYADDSA 37
>2jrx_A UPF0352 protein YEJL; homodimer, alpha helix, structural genomics,
PSI-2, protein initiative, northeast structural genomics
consortium, NESG; NMR {Escherichia coli} SCOP: a.284.1.1
Length = 83
Score = 27.1 bits (60), Expect = 1.7
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 199 KEGRNINLSLMTLGQVITNLSDHSAVPPYR 228
K +LSLM LG ++TNL + S P R
Sbjct: 25 KHKAPTDLSLMVLGNMVTNLINTSIAPAQR 54
>2jpq_A UPF0352 protein VP2129; dimer, all alpha, homodimer, structural
genomics, PSI-2, protein structure initiative; NMR
{Vibrio parahaemolyticus} SCOP: a.284.1.1
Length = 83
Score = 27.1 bits (60), Expect = 1.8
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 199 KEGRNINLSLMTLGQVITNLSDHSAVPP 226
K + L+LM G + TN+ + V
Sbjct: 25 KHAASPELTLMIAGNIATNVLNQR-VAA 51
>2l97_A HTRA, putative serine protease; HTRA-PDZ, protein binding; NMR
{Streptococcus pneumoniae}
Length = 134
Score = 27.6 bits (62), Expect = 2.0
Identities = 10/56 (17%), Positives = 24/56 (42%), Gaps = 10/56 (17%)
Query: 70 IPSNMVAQV--------KIS--YLEIYNEFVYDLLSSERKALKVRESPDTGIFVSD 115
IP+N + K++ L I + ++ +S+ + L + + +G+ V
Sbjct: 8 IPANDAINIIEQLEKNGKVTRPALGIQMVNLSNVSTSDIRRLNIPSNVTSGVIVRS 63
>2jr2_A UPF0352 protein CPS_2611; dimer, all alpha helix, homodimer,
structural genomics, PSI, structure initiative; NMR
{Colwellia psychrerythraea} SCOP: a.284.1.1 PDB: 2ota_A
Length = 76
Score = 25.2 bits (55), Expect = 7.4
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 199 KEGRNINLSLMTLGQVITNL 218
KE +L+LM LG +TN+
Sbjct: 25 KEEVTPDLALMCLGNAVTNI 44
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.129 0.352
Gapped
Lambda K H
0.267 0.0757 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,256,127
Number of extensions: 176013
Number of successful extensions: 521
Number of sequences better than 10.0: 1
Number of HSP's gapped: 426
Number of HSP's successfully gapped: 68
Length of query: 237
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 146
Effective length of database: 4,160,982
Effective search space: 607503372
Effective search space used: 607503372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.3 bits)