RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17371
(237 letters)
>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}
Length = 323
Score = 133 bits (334), Expect = 4e-38
Identities = 74/214 (34%), Positives = 106/214 (49%), Gaps = 11/214 (5%)
Query: 33 GTNEFVFHFSMMGDNLDSSL------KETTGIIPRFCHQLFDQI---PSNMVAQVKISYL 83
G N +F + ++ E GIIPR +F+ I N+ +K+SY
Sbjct: 74 GYNGTIFAYGQTSSGKTHTMEGKLHDPEGMGIIPRIVQDIFNYIYSMDENLEFHIKVSYF 133
Query: 84 EIYNEFVYDLLSSERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATAST 143
EIY + + DLL + L V E + +V + V S E+ + EG R A T
Sbjct: 134 EIYLDKIRDLLDVSKTNLSVHEDKNRVPYVKGCTERFVCSPDEVMDTIDEGKSNRHVAVT 193
Query: 144 NMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRN 203
NMN+ SSRSHSIF I + ++ LVDLAGSE+V++T A E +N
Sbjct: 194 NMNEHSSRSHSIFLINVKQENTQTEQKLS--GKLYLVDLAGSEKVSKTGAEGAVLDEAKN 251
Query: 204 INLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
IN SL LG VI+ L++ S PYR+S +T +L+
Sbjct: 252 INKSLSALGNVISALAEGSTYVPYRDSKMTRILQ 285
Score = 43.4 bits (101), Expect = 9e-06
Identities = 6/28 (21%), Positives = 15/28 (53%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
++ +P + E+ +TL + +A+ I
Sbjct: 296 IVICCSPSSYNESETKSTLLFGQRAKTI 323
>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic
kinesin eg5 [TaxId: 9606]}
Length = 345
Score = 126 bits (316), Expect = 3e-35
Identities = 78/236 (33%), Positives = 118/236 (50%), Gaps = 8/236 (3%)
Query: 9 QSHIEESLATLRYALQARNIFEKIGTNEFVFHFSMMGDNLDSSLKETTGIIPRFCHQLFD 68
++E + + A T + + GIIPR HQ+F+
Sbjct: 70 CPILDEVIMGYNCTIFAYGQTGTGKT-FTMEGERSPNEEYTWEEDPLAGIIPRTLHQIFE 128
Query: 69 QIPS-NMVAQVKISYLEIYNEFVYDLLS-----SERKALKVRESPDTGIFVSDLSVHGVS 122
++ VK+S LEIYNE ++DLL+ SER + G+ + L V
Sbjct: 129 KLTDNGTEFSVKVSLLEIYNEELFDLLNPSSDVSERLQMFDDPRNKRGVIIKGLEEITVH 188
Query: 123 SFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTE-DTGSSVTQKCSQINLVD 181
+ E+ + L +G R TA+T MN SSRSHS+F + + + E K ++NLVD
Sbjct: 189 NKDEVYQILEKGAAKRTTAATLMNAYSSRSHSVFSVTIHMKETTIDGEELVKIGKLNLVD 248
Query: 182 LAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRNSTLTYLLK 237
LAGSE + ++ A ++R +E NIN SL+TLG+VIT L + + PYR S LT +L+
Sbjct: 249 LAGSENIGRSGAVDKRAREAGNINQSLLTLGRVITALVERTPHVPYRESKLTRILQ 304
Score = 42.3 bits (98), Expect = 2e-05
Identities = 14/28 (50%), Positives = 23/28 (82%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
++ATI+P ++EE+L+TL YA +A+NI
Sbjct: 315 IIATISPASLNLEETLSTLEYAHRAKNI 342
>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a
[TaxId: 10090]}
Length = 349
Score = 122 bits (307), Expect = 7e-34
Identities = 93/217 (42%), Positives = 126/217 (58%), Gaps = 23/217 (10%)
Query: 40 HFSMMGDNLDSSLKETTGIIPRFCHQLFDQIP----SNMVAQVKISYLEIYNEFVYDLLS 95
++MMG GIIP+ C LF +I NM V++SY+EIY E V DLL+
Sbjct: 101 SYTMMGKQEKDQ----QGIIPQLCEDLFSRINDTTNDNMSYSVEVSYMEIYCERVRDLLN 156
Query: 96 S-ERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHS 154
+ L+VRE P G +V DLS V+S++++Q + GNK R A+TNMN+ SSRSH+
Sbjct: 157 PKNKGNLRVREHPLLGPYVEDLSKLAVTSYNDIQDLMDSGNKPRTVAATNMNETSSRSHA 216
Query: 155 IFQIQLTLTEDT--GSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLG 212
+F I T + T+K S+I+LVDLAGSER T A R KEG NIN SL TLG
Sbjct: 217 VFNIIFTQKRHDAETNITTEKVSKISLVDLAGSERADSTGAKGTRLKEGANINKSLTTLG 276
Query: 213 QVITNLSDHSAVP------------PYRNSTLTYLLK 237
+VI+ L++ + P PYR+S LT+LL+
Sbjct: 277 KVISALAEMDSGPNKNKKKKKTDFIPYRDSVLTWLLR 313
Score = 40.7 bits (94), Expect = 7e-05
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 1 MLATINPLQSHIEESLATLRYALQAR 26
M+A ++P + +E+L+TLRYA +A+
Sbjct: 324 MVAALSPADINYDETLSTLRYADRAK 349
>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId:
4932]}
Length = 342
Score = 111 bits (277), Expect = 1e-29
Identities = 69/221 (31%), Positives = 106/221 (47%), Gaps = 20/221 (9%)
Query: 35 NEFVFHFSMMGDNLDSSL-KETTGIIPRFCHQLFDQIP----SNMVAQVKISYLEIYNEF 89
N +F + G ++ GIIP +F+ I +V ++EIYNE
Sbjct: 83 NVCIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKGWDYKVNCEFIEIYNEN 142
Query: 90 VYDLLSSERKALK----------VRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARA 139
+ DLL S+ + + +++++ + S ++ L + NK R+
Sbjct: 143 IVDLLRSDNNNKEDTSIGLKHEIRHDQETKTTTITNVTSCKLESEEMVEIILKKANKLRS 202
Query: 140 TASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFK 199
TAST N+ SS SHSIF I L+ + + +NLVDLAGSER+ ++ +R +
Sbjct: 203 TASTASNEHSSASHSIFIIHLSGSNA--KTGAHSYGTLNLVDLAGSERINVSQVVGDRLR 260
Query: 200 EGRNINLSLMTLGQVITNLSDHSAVP---PYRNSTLTYLLK 237
E +NIN SL LG VI L + P+RNS LTYLL+
Sbjct: 261 ETQNINKSLSCLGDVIHALGQPDSTKRHIPFRNSKLTYLLQ 301
Score = 43.8 bits (102), Expect = 6e-06
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M I+P SHI E+L +LR+A + +
Sbjct: 312 MFVNISPSSSHINETLNSLRFASKVNST 339
>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId:
10090]}
Length = 362
Score = 111 bits (277), Expect = 2e-29
Identities = 63/203 (31%), Positives = 97/203 (47%), Gaps = 13/203 (6%)
Query: 40 HFSMMGDNLDSSLKETTGIIPRFCHQLFDQI----PSNMVAQVKISYLEIYNEFVYDLLS 95
+M GD S + GI +F N+ +V +++ EIYN V+DL
Sbjct: 128 THTMGGDLSGKSQNASKGIYAMASRDVFLLKNQPRYRNLNLEVYVTFFEIYNGKVFDL-L 186
Query: 96 SERKALKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSI 155
+++ L+V E + V L + V+ ++ K ++ G+ R + T N SSRSH+
Sbjct: 187 NKKAKLRVLEDSRQQVQVVGLQEYLVTCADDVIKMINMGSACRTSGQTFANSNSSRSHAC 246
Query: 156 FQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTK-ATEERFKEGRNINLSLMTLGQV 214
FQI L + + +LVDLAG+ER A T A + EG IN SL+ L +
Sbjct: 247 FQILLRTKG-------RLHGKFSLVDLAGNERGADTSSADRQTRMEGAEINKSLLALKEC 299
Query: 215 ITNLSDHSAVPPYRNSTLTYLLK 237
I L + A P+R S LT +L+
Sbjct: 300 IRALGQNKAHTPFRESKLTQVLR 322
Score = 43.4 bits (101), Expect = 1e-05
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNI 28
M+A I+P S E +L TLRYA + + +
Sbjct: 334 MIAMISPGISSCEYTLNTLRYADRVKEL 361
>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}
Length = 354
Score = 108 bits (270), Expect = 1e-28
Identities = 80/188 (42%), Positives = 115/188 (61%), Gaps = 6/188 (3%)
Query: 54 ETTGIIPRFCHQLFDQI---PSNMVAQVKISYLEIYNEFVYDLLSSERKALKVRESPDTG 110
+ G+IPR Q+F I +N+ V++SY+EIY E + DLL+ + L V E + G
Sbjct: 106 DGRGVIPRIVEQIFTSILSSAANIEYTVRVSYMEIYMERIRDLLAPQNDNLPVHEEKNRG 165
Query: 111 IFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSV 170
++V L VSS E+ + + G ARA A+TNMN +SSRSHSIF I T+T+ +
Sbjct: 166 VYVKGLLEIYVSSVQEVYEVMRRGGNARAVAATNMNQESSRSHSIFVI--TITQKNVETG 223
Query: 171 TQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSD-HSAVPPYRN 229
+ K Q+ LVDLAGSE+V +T A+ + +E + IN SL LG VI L+D S+ PYR+
Sbjct: 224 SAKSGQLFLVDLAGSEKVGKTGASGQTLEEAKKINKSLSALGMVINALTDGKSSHVPYRD 283
Query: 230 STLTYLLK 237
S LT +L+
Sbjct: 284 SKLTRILQ 291
Score = 43.0 bits (100), Expect = 1e-05
Identities = 10/36 (27%), Positives = 21/36 (58%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
++ +P + E+L+TLR+ ++A++I K N
Sbjct: 302 LIINCSPSSYNDAETLSTLRFGMRAKSIKNKAKVNA 337
>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium
falciparum) [TaxId: 5833]}
Length = 330
Score = 107 bits (267), Expect = 2e-28
Identities = 58/198 (29%), Positives = 91/198 (45%), Gaps = 10/198 (5%)
Query: 44 MGDNLDSSLKETTGIIPRFCHQLFDQIPSNMVA---QVKISYLEIYNEFVYDLLSSERKA 100
M + +T GI +F + + IS+ EIY +YDLL +RK
Sbjct: 102 MLGSQPYGQSDTPGIFQYAAGDIFTFLNIYDKDNTKGIFISFYEIYCGKLYDLLQ-KRKM 160
Query: 101 LKVRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQL 160
+ E+ + V DL + V + E+ + +G R + ND+SSRSH+I I L
Sbjct: 161 VAALENGKKEVVVKDLKILRVLTKEELILKMIDGVLLRKIGVNSQNDESSRSHAILNIDL 220
Query: 161 TLTEDTGSSVTQKCSQINLVDLAGSERVAQTKAT-EERFKEGRNINLSLMTLGQVITNLS 219
+ +I +DLAGSER A T + ++ +G NIN SL+ L + I +
Sbjct: 221 K-----DINKNTSLGKIAFIDLAGSERGADTVSQNKQTQTDGANINRSLLALKECIRAMD 275
Query: 220 DHSAVPPYRNSTLTYLLK 237
P+R+S LT +L+
Sbjct: 276 SDKNHIPFRDSELTKVLR 293
Score = 42.3 bits (98), Expect = 2e-05
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 1 MLATINPLQSHIEESLATLRYALQARN 27
M+A I+P S E++L TLRY+ + +N
Sbjct: 304 MIANISPTISCCEQTLNTLRYSSRVKN 330
>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional)
{Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 368
Score = 103 bits (257), Expect = 1e-26
Identities = 69/206 (33%), Positives = 105/206 (50%), Gaps = 18/206 (8%)
Query: 38 VFHFSMMGDNLDSSLKETTGIIPRFCHQLFDQIPS----NMVAQVKISYLEIYNEFVYDL 93
++M G G+IPR LFD I ++K ++LEIYNE +YDL
Sbjct: 137 GKTYTMDGVPES------VGVIPRTVDLLFDSIRGYRNLGWEYEIKATFLEIYNEVLYDL 190
Query: 94 LSSERKALK--VRESPDTGIFVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSR 151
LS+E+K ++ + ++ I+VS+++ V + ++ + RATAST N++SSR
Sbjct: 191 LSNEQKDMEIRMAKNNKNDIYVSNITEETVLDPNHLRHLMHTAKMNRATASTAGNERSSR 250
Query: 152 SHSIFQIQLTLTEDTGSSVTQKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTL 211
SH++ +++L + INLVDLA +++ T R E +NIN SL L
Sbjct: 251 SHAVTKLELIGRHAEKQEI--SVGSINLVDLA----GSESPKTSTRMTETKNINRSLSEL 304
Query: 212 GQVITNLSDHSAVPPYRNSTLTYLLK 237
VI L PYRNS LT+LL
Sbjct: 305 TNVILALLQKQDHIPYRNSKLTHLLM 330
Score = 40.7 bits (94), Expect = 8e-05
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 1 MLATINPLQSHIEESLATLRYALQARN 27
M ++P Q +ES+ +LR+A +
Sbjct: 341 MFINVSPFQDCFQESVKSLRFAASVNS 367
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 92.4 bits (228), Expect = 1e-22
Identities = 57/186 (30%), Positives = 101/186 (54%), Gaps = 8/186 (4%)
Query: 58 IIPRFCHQLFDQIPSNMV---AQVKISYLEIYNEFVYDLLS---SERKALKVRESPDTGI 111
+ PR +LF + + +K +E+Y + + DLL ++R L +++ +
Sbjct: 101 LTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLVDLLLPKQAKRLKLDIKKDSKGMV 160
Query: 112 FVSDLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVT 171
V +++V +S++ E++ + G++ R T T MN++SSRSH I + + T ++
Sbjct: 161 SVENVTVVSISTYEELKTIIQRGSEQRHTTGTLMNEQSSRSHLIVSVIIESTNLQTQAIA 220
Query: 172 QKCSQINLVDLAGSERVAQTKATEERFKEGRNINLSLMTLGQVITNLSDHSAVPPYRNST 231
+++ VDLAGSERV ++ + + KE ++IN SL LG VI+ LS + PYRN
Sbjct: 221 --RGKLSFVDLAGSERVKKSGSAGNQLKEAQSINKSLSALGDVISALSSGNQHIPYRNHK 278
Query: 232 LTYLLK 237
LT L+
Sbjct: 279 LTMLMS 284
Score = 44.2 bits (103), Expect = 6e-06
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 1 MLATINPLQSHIEESLATLRYALQARNIFEKIGTNE 36
M I+P +S+++E+ +L YA + R+I N
Sbjct: 295 MFVNISPAESNLDETHNSLTYASRVRSIVNDPSKNV 330
>d2qtia1 a.284.1.1 (A:8-72) Uncharacterized protein SO2176
{Shewanella oneidensis [TaxId: 70863]}
Length = 65
Score = 25.8 bits (57), Expect = 1.0
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 199 KEGRNINLSLMTLGQVITNLSDHSAVPPYR 228
K +LSLM LG +T+L + R
Sbjct: 18 KHKAPTDLSLMALGNCVTHLLERKVPSESR 47
>d1lmqa_ d.2.1.2 (A:) Lysozyme {Rainbow trout (Oncorhynchus mykiss)
[TaxId: 8022]}
Length = 129
Score = 26.8 bits (59), Expect = 1.2
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
Query: 116 LSVHGVSSF--SEMQKW--LSEGNKARATASTNMNDKSSRSHSIFQI 158
L G+ + + + W LS+ + T +TN N S + IFQI
Sbjct: 12 LKASGMDGYAGNSLPNWVCLSKWESSYNTQATNRNTDGSTDYGIFQI 58
>d1gd6a_ d.2.1.2 (A:) Lysozyme {Silkworm (Bombyx mori) [TaxId:
7091]}
Length = 119
Score = 26.7 bits (59), Expect = 1.3
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 116 LSVHGVSSFSEMQKW--LSEGNKARATASTNMNDKSSRSHSIFQIQLTLTEDTGSSVTQK 173
L HG + M+ W L E +R T+ TN N S+ + +FQI G+S +
Sbjct: 12 LRKHGFEE-NLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGASPGKD 70
Query: 174 C 174
C
Sbjct: 71 C 71
>d2jpqa1 a.284.1.1 (A:1-75) Hypothetical protein VP2129 {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 75
Score = 25.9 bits (57), Expect = 1.5
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 199 KEGRNINLSLMTLGQVITNLSDHSAVPP 226
K + L+LM G + TN+ + V
Sbjct: 25 KHAASPELTLMIAGNIATNVLNQR-VAA 51
>d2jrxa1 a.284.1.1 (A:1-75) Uncharacterized protein YejL
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 25.9 bits (57), Expect = 1.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 199 KEGRNINLSLMTLGQVITNLSDHSAVPP 226
K +LSLM LG ++TNL + S + P
Sbjct: 25 KHKAPTDLSLMVLGNMVTNLINTS-IAP 51
>d2juza1 a.284.1.1 (A:1-72) Uncharacterized protein HI0840
{Haemophilus influenzae [TaxId: 727]}
Length = 72
Score = 25.5 bits (56), Expect = 1.6
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 199 KEGRNINLSLMTLGQVITNLSDHSAVPP 226
K ++LSL+ LG + +NL S VP
Sbjct: 25 KHKAPVDLSLIALGNMASNLLTTS-VPQ 51
>d2vb1a1 d.2.1.2 (A:1-129) Lysozyme {Chicken (Gallus gallus) [TaxId:
9031]}
Length = 129
Score = 26.0 bits (57), Expect = 2.3
Identities = 11/47 (23%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 116 LSVHGVSSF--SEMQKW--LSEGNKARATASTNMNDKSSRSHSIFQI 158
+ HG+ ++ + W ++ T +TN N S + I QI
Sbjct: 12 MKRHGLDNYRGYSLGNWVCAAKFESNFNTQATNRNTDGSTDYGILQI 58
>d2otaa1 a.284.1.1 (A:7-68) Hypothetical protein CPS2611 {Colwellia
psychrerythraea [TaxId: 28229]}
Length = 62
Score = 24.7 bits (54), Expect = 3.1
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 199 KEGRNINLSLMTLGQVITNL 218
KE +L+LM LG +TN+
Sbjct: 19 KEEVTPDLALMCLGNAVTNI 38
>d1syxb1 d.76.1.1 (B:25-86) GYF domain from cd2bp2 protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 24.3 bits (53), Expect = 4.2
Identities = 7/17 (41%), Positives = 13/17 (76%)
Query: 118 VHGVSSFSEMQKWLSEG 134
++G + ++MQ W+SEG
Sbjct: 16 LYGPFTSAQMQTWVSEG 32
>d1zbma1 c.94.1.1 (A:2-261) Hypothetical protein AF1704
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 260
Score = 25.3 bits (55), Expect = 7.3
Identities = 7/31 (22%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 73 NMVAQVKISYLEIY-NEFVYDLLSSERKALK 102
+ + + +Y N++ Y++ S ALK
Sbjct: 218 GLDRERAKRFAMMYVNDYTYNMPESVDAALK 248
>d1iyjb5 b.40.4.3 (B:2980-3117) OB-fold domains of BRCA2 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 138
Score = 24.7 bits (54), Expect = 7.5
Identities = 5/26 (19%), Positives = 17/26 (65%)
Query: 4 TINPLQSHIEESLATLRYALQARNIF 29
+ +P ++H +E + +++A++ + F
Sbjct: 95 SASPKEAHFQERVTNMKHAIENIDTF 120
>d1moqa_ c.80.1.1 (A:) "Isomerase domain" of glucosamine 6-phosphate
synthase (GLMS) {Escherichia coli [TaxId: 562]}
Length = 366
Score = 25.1 bits (54), Expect = 9.0
Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Query: 115 DLSVHGVSSFSEMQKWLSEGNKARATASTNMNDKSSRSHSIFQIQ-----LTLTEDTGSS 169
V S F + + + + + + + + L + GSS
Sbjct: 79 PCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGSS 138
Query: 170 VTQKCSQINLVDLAGSERVAQTKA 193
+ ++ + + VA TKA
Sbjct: 139 LVRESDLALMTNAGTEIGVASTKA 162
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.129 0.352
Gapped
Lambda K H
0.267 0.0433 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 771,472
Number of extensions: 31777
Number of successful extensions: 125
Number of sequences better than 10.0: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 35
Length of query: 237
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 154
Effective length of database: 1,268,006
Effective search space: 195272924
Effective search space used: 195272924
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)