BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17374
(71 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q27802|DYHC2_TRIGR Cytoplasmic dynein 2 heavy chain 1 OS=Tripneustes gratilla GN=DYH1B
PE=2 SV=2
Length = 4318
Score = 58.2 bits (139), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Query: 7 TPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAFLSV 64
TP WQS W G +P+LY++++VSR + + + + + ++LS LFHP FL+
Sbjct: 4134 TPLSWQSKWEGPEDPVLYLKTIVSRTMAIQGWVEKAQRNNLLSDTLNLSELFHPDTFLNA 4193
Query: 65 LKQHTAR 71
L+Q TAR
Sbjct: 4194 LRQQTAR 4200
>sp|Q8NCM8|DYHC2_HUMAN Cytoplasmic dynein 2 heavy chain 1 OS=Homo sapiens GN=DYNC2H1 PE=1
SV=4
Length = 4307
Score = 57.0 bits (136), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 4 NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
N P WQS W G +PL Y+R +V+RA+ + + +DLS LFHP F
Sbjct: 4120 NQKCPLAWQSKWEGPEDPLQYLRGLVARALAIQNWVDKAEKQALLSETLDLSELFHPDTF 4179
Query: 62 LSVLKQHTAR 71
L+ L+Q TAR
Sbjct: 4180 LNALRQETAR 4189
>sp|Q9JJ79|DYHC2_RAT Cytoplasmic dynein 2 heavy chain 1 OS=Rattus norvegicus GN=Dync2h1
PE=1 SV=1
Length = 4306
Score = 56.2 bits (134), Expect = 6e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 4 NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
N P WQS W G +PL Y+R +V+R + + + + +DLS LFHP F
Sbjct: 4119 NQKCPLTWQSKWEGPEDPLQYLRGLVARTLAIQNWVEKAEKQALLADTLDLSELFHPDTF 4178
Query: 62 LSVLKQHTAR 71
L+ L+Q TAR
Sbjct: 4179 LNALRQETAR 4188
>sp|Q45VK7|DYHC2_MOUSE Cytoplasmic dynein 2 heavy chain 1 OS=Mus musculus GN=Dync2h1 PE=1
SV=1
Length = 4306
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 27/70 (38%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 4 NDYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVS--STYWRSPVDLSGLFHPHAF 61
N P WQS W G +PL Y+R +V+R + + + + +DLS LFHP F
Sbjct: 4119 NQKCPLTWQSRWEGPEDPLQYLRGLVARTLAIQNWVEKAEKQVLLADTLDLSELFHPDTF 4178
Query: 62 LSVLKQHTAR 71
L+ L+Q TAR
Sbjct: 4179 LNALRQETAR 4188
>sp|Q19542|DYHC2_CAEEL Cytoplasmic dynein 2 heavy chain 1 OS=Caenorhabditis elegans GN=che-3
PE=3 SV=2
Length = 4171
Score = 53.1 bits (126), Expect = 5e-07, Method: Composition-based stats.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 7 TPDDWQSIWSGSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRS--PVDLSGLFHPHAFLSV 64
TPD+W S+W+G +P Y+ VV + + ++ S + P+D S LF+P+ FL+
Sbjct: 3993 TPDEWDSMWAGPSDPADYLNVVVKKTRGTLQLFESSKSSSLLSSPIDFSDLFYPNIFLNA 4052
Query: 65 LKQHTAR 71
L+Q T+R
Sbjct: 4053 LRQTTSR 4059
>sp|Q9SMH5|DYHC2_CHLRE Cytoplasmic dynein 2 heavy chain 1 OS=Chlamydomonas reinhardtii
GN=DHC1B PE=1 SV=2
Length = 4334
Score = 52.4 bits (124), Expect = 8e-07, Method: Composition-based stats.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 10/77 (12%)
Query: 5 DYTPDDWQSIWSGSGNPLLYIRSVVSRAVMVH----KCYQ------VSSTYWRSPVDLSG 54
D P W + W G P+ Y R+VV++A+ + +C Q + + P++LS
Sbjct: 4137 DVIPGSWDAAWEGPEAPMDYCRAVVAKALAIEGHWARCQQPGGGGLLDGSGGAGPLELSS 4196
Query: 55 LFHPHAFLSVLKQHTAR 71
+FHP FL+ L+Q +AR
Sbjct: 4197 VFHPGTFLNALRQQSAR 4213
>sp|Q47NX7|ARC_THEFY Proteasome-associated ATPase OS=Thermobifida fusca (strain YX)
GN=arc PE=3 SV=1
Length = 584
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++VS
Sbjct: 536 PNTTNPDDWARISGKKGERIVYIRTLVS 563
>sp|D1A2S5|ARC_THECD Proteasome-associated ATPase OS=Thermomonospora curvata (strain
ATCC 19995 / DSM 43183 / JCM 3096 / NCIMB 10081) GN=arc
PE=3 SV=1
Length = 587
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++VS
Sbjct: 539 PNTTNPDDWARISGKKGERIVYIRTLVS 566
>sp|D3Q568|ARC_STANL Proteasome-associated ATPase OS=Stackebrandtia nassauensis (strain
DSM 44728 / NRRL B-16338 / NBRC 102104 / LLR-40K-21)
GN=arc PE=3 SV=1
Length = 596
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++VS
Sbjct: 549 PNTTNPDDWARISGKKGERIVYIRTLVS 576
>sp|A4X741|ARC_SALTO Proteasome-associated ATPase OS=Salinispora tropica (strain ATCC
BAA-916 / DSM 44818 / CNB-440) GN=arc PE=3 SV=1
Length = 593
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++VS
Sbjct: 545 PNTTNPDDWARISGKKGERIVYIRTLVS 572
>sp|A8M2A0|ARC_SALAI Proteasome-associated ATPase OS=Salinispora arenicola (strain
CNS-205) GN=arc PE=3 SV=1
Length = 593
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++VS
Sbjct: 545 PNTTNPDDWARISGKKGERIVYIRTLVS 572
>sp|A4FBX6|ARC_SACEN Proteasome-associated ATPase OS=Saccharopolyspora erythraea (strain
NRRL 23338) GN=arc PE=3 SV=1
Length = 597
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++VS
Sbjct: 550 PNTTNPDDWARISGKKGERIVYIRTLVS 577
>sp|C8XAR0|ARC_NAKMY Proteasome-associated ATPase OS=Nakamurella multipartita (strain
ATCC 700099 / DSM 44233 / JCM 9543 / Y-104) GN=arc PE=3
SV=1
Length = 592
Score = 33.5 bits (75), Expect = 0.38, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++VS
Sbjct: 545 PNTTNPDDWARISGKKGERIVYIRTLVS 572
>sp|C7R400|ARC_JONDD Proteasome-associated ATPase OS=Jonesia denitrificans (strain ATCC
14870 / DSM 20603 / CIP 55134) GN=arc PE=3 SV=1
Length = 550
Score = 33.5 bits (75), Expect = 0.43, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVSR 31
PN PDDW I G +++IR++V R
Sbjct: 499 PNTTNPDDWARISGKKGERIVFIRTIVQR 527
>sp|Q39565|DYHB_CHLRE Dynein beta chain, flagellar outer arm OS=Chlamydomonas reinhardtii
GN=ODA4 PE=3 SV=1
Length = 4568
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 5/69 (7%)
Query: 5 DYTPDDWQSIWSGSGNPL-LYIRSVVSR-AVMVHKCYQVSSTYWRSPVDLSGLFHPHAFL 62
D P W+++ S PL ++ ++++R A +V ++S+ V LSGLF+P +FL
Sbjct: 4381 DAVPGSWRNLAYPSLRPLGSWLGNLLARHAQLVDWTAELSTP---KAVWLSGLFNPQSFL 4437
Query: 63 SVLKQHTAR 71
+ + Q TAR
Sbjct: 4438 TAVMQATAR 4446
>sp|D2Q4G5|ARC_KRIFD Proteasome-associated ATPase OS=Kribbella flavida (strain DSM 17836
/ JCM 10339 / NBRC 14399) GN=arc PE=3 SV=1
Length = 578
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR+++S
Sbjct: 530 PNTTNPDDWARISGKKGERIVYIRTLIS 557
>sp|D2S6D9|ARC_GEOOG Proteasome-associated ATPase OS=Geodermatophilus obscurus (strain
ATCC 25078 / DSM 43160 / JCM 3152 / G-20) GN=arc PE=3
SV=1
Length = 593
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR+++S
Sbjct: 546 PNTTNPDDWARISGKKGERIVYIRTLIS 573
>sp|A0LU46|ARC_ACIC1 Proteasome-associated ATPase OS=Acidothermus cellulolyticus (strain
ATCC 43068 / 11B) GN=arc PE=3 SV=1
Length = 583
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR+++S
Sbjct: 535 PNTTNPDDWARISGKKGERIVYIRTLIS 562
>sp|D1BS23|ARC_XYLCX Proteasome-associated ATPase OS=Xylanimonas cellulosilytica (strain
DSM 15894 / CECT 5975 / LMG 20990 / XIL07) GN=arc PE=3
SV=1
Length = 543
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVSR 31
PN PDDW I G +++IRS+V +
Sbjct: 495 PNTTNPDDWARISGKKGERIVFIRSIVQK 523
>sp|D2ATX1|ARC_STRRD Proteasome-associated ATPase OS=Streptosporangium roseum (strain
ATCC 12428 / DSM 43021 / JCM 3005 / NI 9100) GN=arc PE=3
SV=1
Length = 587
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 539 PNTTNPDDWARISGKKGERIVYIRTLVT 566
>sp|Q9RJ58|ARC_STRCO Proteasome-associated ATPase OS=Streptomyces coelicolor (strain
ATCC BAA-471 / A3(2) / M145) GN=arc PE=3 SV=1
Length = 588
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 540 PNTTNPDDWARISGKKGERIVYIRTLVT 567
>sp|C7MWW2|ARC_SACVD Proteasome-associated ATPase OS=Saccharomonospora viridis (strain
ATCC 15386 / DSM 43017 / JCM 3036 / NBRC 12207 / P101)
GN=arc PE=3 SV=1
Length = 602
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 555 PNTTNPDDWARISGKKGERIVYIRTLVT 582
>sp|Q0SIF4|ARC_RHOSR Proteasome-associated ATPase OS=Rhodococcus sp. (strain RHA1)
GN=arc PE=3 SV=1
Length = 591
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 544 PNTTNPDDWARISGKKGERIVYIRTLVT 571
>sp|C1ASQ2|ARC_RHOOB Proteasome-associated ATPase OS=Rhodococcus opacus (strain B4)
GN=arc PE=3 SV=1
Length = 591
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 544 PNTTNPDDWARISGKKGERIVYIRTLVT 571
>sp|O50202|ARC_RHOER Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=arc
PE=1 SV=1
Length = 591
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 544 PNTTNPDDWARISGKKGERIVYIRTLVT 571
>sp|C0ZZV2|ARC_RHOE4 Proteasome-associated ATPase OS=Rhodococcus erythropolis (strain
PR4 / NBRC 100887) GN=arc PE=3 SV=1
Length = 591
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 544 PNTTNPDDWARISGKKGERIVYIRTLVT 571
>sp|Q5YUW4|ARC_NOCFA Proteasome-associated ATPase OS=Nocardia farcinica (strain IFM
10152) GN=arc PE=3 SV=1
Length = 586
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 539 PNTTNPDDWARISGKKGERIVYIRTLVT 566
>sp|A1TAQ3|ARC_MYCVP Proteasome-associated ATPase OS=Mycobacterium vanbaalenii (strain
DSM 7251 / PYR-1) GN=mpa PE=3 SV=1
Length = 615
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 568 PNTTNPDDWARISGKKGERIVYIRTLVT 595
>sp|A0PQT9|ARC_MYCUA Proteasome-associated ATPase OS=Mycobacterium ulcerans (strain
Agy99) GN=mpa PE=3 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|P63345|ARC_MYCTU Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa
PE=1 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|C6DPU6|ARC_MYCTK Proteasome-associated ATPase OS=Mycobacterium tuberculosis (strain
KZN 1435 / MDR) GN=mpa PE=3 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|A5WP89|ARC_MYCTF Proteasome-associated ATPase OS=Mycobacterium tuberculosis (strain
F11) GN=mpa PE=3 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|A5U4E1|ARC_MYCTA Proteasome-associated ATPase OS=Mycobacterium tuberculosis (strain
ATCC 25177 / H37Ra) GN=mpa PE=3 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|Q1B795|ARC_MYCSS Proteasome-associated ATPase OS=Mycobacterium sp. (strain MCS)
GN=mpa PE=3 SV=1
Length = 615
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 568 PNTTNPDDWARISGKKGERIVYIRTLVT 595
>sp|A1UHT0|ARC_MYCSK Proteasome-associated ATPase OS=Mycobacterium sp. (strain KMS)
GN=mpa PE=3 SV=1
Length = 615
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 568 PNTTNPDDWARISGKKGERIVYIRTLVT 595
>sp|A3Q196|ARC_MYCSJ Proteasome-associated ATPase OS=Mycobacterium sp. (strain JLS)
GN=mpa PE=3 SV=1
Length = 615
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 568 PNTTNPDDWARISGKKGERIVYIRTLVT 595
>sp|A0QZ54|ARC_MYCS2 Proteasome-associated ATPase OS=Mycobacterium smegmatis (strain
ATCC 700084 / mc(2)155) GN=mpa PE=1 SV=1
Length = 613
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 566 PNTTNPDDWARISGKKGERIVYIRTLVT 593
>sp|B2HFW2|ARC_MYCMM Proteasome-associated ATPase OS=Mycobacterium marinum (strain ATCC
BAA-535 / M) GN=mpa PE=3 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|P46509|ARC_MYCLE Proteasome-associated ATPase OS=Mycobacterium leprae (strain TN)
GN=mpa PE=3 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|B8ZRF0|ARC_MYCLB Proteasome-associated ATPase OS=Mycobacterium leprae (strain
Br4923) GN=mpa PE=3 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|A4TB65|ARC_MYCGI Proteasome-associated ATPase OS=Mycobacterium gilvum (strain
PYR-GCK) GN=mpa PE=3 SV=1
Length = 615
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 568 PNTTNPDDWARISGKKGERIVYIRTLVT 595
>sp|C1AQ31|ARC_MYCBT Proteasome-associated ATPase OS=Mycobacterium bovis (strain BCG /
Tokyo 172 / ATCC 35737 / TMC 1019) GN=mpa PE=3 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|A1KKF8|ARC_MYCBP Proteasome-associated ATPase OS=Mycobacterium bovis (strain BCG /
Pasteur 1173P2) GN=mpa PE=3 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|P63346|ARC_MYCBO Proteasome-associated ATPase OS=Mycobacterium bovis (strain ATCC
BAA-935 / AF2122/97) GN=mpa PE=3 SV=1
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|B1MAH2|ARC_MYCA9 Proteasome-associated ATPase OS=Mycobacterium abscessus (strain
ATCC 19977 / DSM 44196) GN=mpa PE=3 SV=1
Length = 602
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 555 PNTTNPDDWARISGKKGERIVYIRTLVT 582
>sp|A0QFB2|ARC_MYCA1 Proteasome-associated ATPase OS=Mycobacterium avium (strain 104)
GN=mpa PE=3 SV=2
Length = 609
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 562 PNTTNPDDWARISGKKGERIVYIRTLVT 589
>sp|D0LDS6|ARC_GORB4 Proteasome-associated ATPase OS=Gordonia bronchialis (strain ATCC
25592 / DSM 43247 / JCM 3198 / NCTC 10667) GN=arc PE=3
SV=1
Length = 607
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 560 PNTTNPDDWARISGKKGERIVYIRTLVT 587
>sp|A8LH57|ARC_FRASN Proteasome-associated ATPase OS=Frankia sp. (strain EAN1pec) GN=arc
PE=3 SV=1
Length = 601
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 553 PNTTNPDDWARISGKKGERIVYIRTLVT 580
>sp|Q2J9Q0|ARC_FRASC Proteasome-associated ATPase OS=Frankia sp. (strain CcI3) GN=arc
PE=3 SV=1
Length = 602
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 554 PNTTNPDDWARISGKKGERIVYIRTLVT 581
>sp|Q0RLU1|ARC_FRAAA Proteasome-associated ATPase OS=Frankia alni (strain ACN14a) GN=arc
PE=3 SV=2
Length = 601
Score = 32.3 bits (72), Expect = 0.79, Method: Composition-based stats.
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVS 30
PN PDDW I G ++YIR++V+
Sbjct: 553 PNTTNPDDWARISGKKGERIVYIRTLVT 580
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.134 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,811,501
Number of Sequences: 539616
Number of extensions: 795192
Number of successful extensions: 1558
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1486
Number of HSP's gapped (non-prelim): 68
length of query: 71
length of database: 191,569,459
effective HSP length: 43
effective length of query: 28
effective length of database: 168,365,971
effective search space: 4714247188
effective search space used: 4714247188
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)