Query psy17374
Match_columns 71
No_of_seqs 117 out of 657
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 20:50:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17374.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17374hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vkg_A Dynein heavy chain, cyt 99.8 4.7E-20 1.6E-24 151.9 4.4 69 2-71 3056-3125(3245)
2 1j5w_A Glycyl-tRNA synthetase 48.8 6.9 0.00024 26.7 1.3 40 23-65 13-55 (298)
3 1k8k_E P21, ARP2/3 complex 21 30.9 47 0.0016 21.1 3.1 23 48-70 109-141 (178)
4 3bei_A Prothrombin; serine pro 30.0 18 0.00061 17.9 0.8 8 54-61 3-10 (44)
5 3rf1_A Glycyl-tRNA synthetase 28.4 22 0.00074 24.4 1.2 38 25-65 27-67 (311)
6 2lwd_A Probable ATP-dependent 26.1 34 0.0012 19.4 1.7 12 58-69 78-89 (100)
7 2zfd_B Putative uncharacterize 24.4 16 0.00055 21.5 0.0 12 47-58 15-26 (123)
8 3lsg_A Two-component response 21.9 93 0.0032 16.5 2.9 48 20-69 47-94 (103)
9 2l1n_A Uncharacterized protein 20.4 46 0.0016 19.8 1.5 16 4-19 44-60 (120)
10 3r4h_A Coiled coil helix CC-TE 19.7 50 0.0017 15.0 1.2 9 62-70 4-12 (34)
No 1
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.78 E-value=4.7e-20 Score=151.89 Aligned_cols=69 Identities=19% Similarity=0.328 Sum_probs=47.0
Q ss_pred CCCCCCchhhhhhccCC-CChHHHHHHHHHHHHHHHHHHhhcCCCCCCceecCCCcchhHHHHHHHHHhcC
Q psy17374 2 CPNDYTPDDWQSIWSGS-GNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHTAR 71 (71)
Q Consensus 2 ~~~~~vP~~W~~~~~~~-~~~~~w~~~l~~R~~~l~~w~~~~~~~~~~~~wLs~lF~P~~FLtA~~Q~~AR 71 (71)
+.+|+||..|.+..+++ +.+++|++||++|++|++.|.+. +...|.+|||||||||++||||+||++||
T Consensus 3056 l~~~~VP~~W~~~syps~k~L~~W~~dL~~R~~~l~~W~~~-~~~~p~~~WLsgff~Pq~FLTA~~Q~~AR 3125 (3245)
T 3vkg_A 3056 ISKGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISES-SDYSSIQVWLGGLLNPEAYITATRQSASQ 3125 (3245)
T ss_dssp ----------CCSCCCSSCCHHHHHHHHHHHHHHHHHHHHC--------CCGGGSSCHHHHHHHHHHHHHH
T ss_pred HHcCCCchhhhcccCCCCCCHHHHHHHHHHHHHHHHHHHhc-CCCCCceEecCCCcchHHHHHHHHHHHHH
Confidence 45799999999855544 45699999999999999999986 32248999999999999999999999997
No 2
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=48.75 E-value=6.9 Score=26.74 Aligned_cols=40 Identities=25% Similarity=0.536 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCceecC---CCcchhHHHHHH
Q psy17374 23 LYIRSVVSRAVMVHKCYQVSSTYWRSPVDLS---GLFHPHAFLSVL 65 (71)
Q Consensus 23 ~w~~~l~~R~~~l~~w~~~~~~~~~~~~wLs---~lF~P~~FLtA~ 65 (71)
.|+.+++.+.+.+ |.+. |=..-.++++- |=|||.+||.|+
T Consensus 13 ~~fQ~iIl~Lq~f--Wa~~-GC~i~QpyD~EvGAGT~~PaTfLRaL 55 (298)
T 1j5w_A 13 MYLQDVIMKLNDF--WASK-GCLLEQPYDMEVGAGTFHPATFFGSL 55 (298)
T ss_dssp CCHHHHHHHHHHH--HHHT-TCEECCCCSSCCSSGGGSHHHHTGGG
T ss_pred HHHHHHHHHHHHH--HHHC-CCEEEcCcccccccccCCHHHHHHhc
Confidence 4678888777644 8776 32222455554 899999999876
No 3
>1k8k_E P21, ARP2/3 complex 21 kDa subunit, P21-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.148.1.1 PDB: 1tyq_E* 1u2v_E* 2p9i_E* 2p9k_E* 2p9l_E 2p9n_E* 2p9p_E* 2p9s_E* 2p9u_E* 3dxk_E* 3dxm_E* 3rse_E
Probab=30.93 E-value=47 Score=21.09 Aligned_cols=23 Identities=30% Similarity=0.587 Sum_probs=19.2
Q ss_pred CceecCCCcc-hh---------HHHHHHHHHhc
Q psy17374 48 SPVDLSGLFH-PH---------AFLSVLKQHTA 70 (71)
Q Consensus 48 ~~~wLs~lF~-P~---------~FLtA~~Q~~A 70 (71)
..|-|+++|- |. +||+.+||+++
T Consensus 109 ~gFpLn~~y~~P~~~~e~d~lR~Yl~QlRqEl~ 141 (178)
T 1k8k_E 109 PGFPLNAIYAKPANKQEDEVMRAYLQQLRQETG 141 (178)
T ss_dssp TTCTTTTTSCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccccccCCCChhHHHHHHHHHHHHHHHHH
Confidence 5788999998 52 49999999986
No 4
>3bei_A Prothrombin; serine protease, acute phase, blood coagulation, cleavage on basic residues, disease mutation, gamma-carboxyglutamic ACI glycoprotein; HET: NAG; 1.55A {Homo sapiens} PDB: 1tq7_A* 3lu9_A* 3bef_A* 2pgq_A* 1z8j_A* 1z8i_A* 3hk3_A 2pv9_A* 3edx_A* 2pux_A 3hk6_A 3hki_A* 2ocv_A* 1avg_L 2a1d_A*
Probab=29.98 E-value=18 Score=17.94 Aligned_cols=8 Identities=38% Similarity=1.036 Sum_probs=6.7
Q ss_pred CCcchhHH
Q psy17374 54 GLFHPHAF 61 (71)
Q Consensus 54 ~lF~P~~F 61 (71)
.||+|.+|
T Consensus 3 ~FFnpktF 10 (44)
T 3bei_A 3 TFFNPRTF 10 (44)
T ss_dssp SSSCHHHH
T ss_pred cccCCccc
Confidence 48999988
No 5
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=28.42 E-value=22 Score=24.43 Aligned_cols=38 Identities=24% Similarity=0.391 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceec---CCCcchhHHHHHH
Q psy17374 25 IRSVVSRAVMVHKCYQVSSTYWRSPVDL---SGLFHPHAFLSVL 65 (71)
Q Consensus 25 ~~~l~~R~~~l~~w~~~~~~~~~~~~wL---s~lF~P~~FLtA~ 65 (71)
+.+++.+.+.+ |.+. |-..-.++++ .|=|||.+||.|+
T Consensus 27 fQ~iIl~Lq~f--Wa~q-GC~i~QPyD~EvGAGT~hPaTfLRal 67 (311)
T 3rf1_A 27 FSQMILNLQNY--WQEQ-GCAIMQPYDMPAGAGTFHPATFLRSL 67 (311)
T ss_dssp HHHHHHHHHHH--HHTT-TCEECCCCSSCCSSGGGSHHHHTTTS
T ss_pred HHHHHHHHHHH--HHHC-CCEEECCccccccCCCCCHHHHHHhc
Confidence 57777776644 8776 3211233443 6899999999875
No 6
>2lwd_A Probable ATP-dependent RNA helicase DDX58; RIG-I, CARD, sensor, viral RNA, signaling protein; NMR {Homo sapiens} PDB: 2lwe_A
Probab=26.06 E-value=34 Score=19.42 Aligned_cols=12 Identities=17% Similarity=0.379 Sum_probs=9.8
Q ss_pred hhHHHHHHHHHh
Q psy17374 58 PHAFLSVLKQHT 69 (71)
Q Consensus 58 P~~FLtA~~Q~~ 69 (71)
+++|+.|+++.-
T Consensus 78 f~~fl~AL~~~g 89 (100)
T 2lwd_A 78 PKTLKLALEKER 89 (100)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHcC
Confidence 588999999863
No 7
>2zfd_B Putative uncharacterized protein T20L15_90; calcium binding protein, protein-protein complex, ATP-bindin kinase, nucleotide-binding; 1.20A {Arabidopsis thaliana}
Probab=24.37 E-value=16 Score=21.47 Aligned_cols=12 Identities=42% Similarity=0.628 Sum_probs=9.8
Q ss_pred CCceecCCCcch
Q psy17374 47 RSPVDLSGLFHP 58 (71)
Q Consensus 47 ~~~~wLs~lF~P 58 (71)
+..++|||||-.
T Consensus 15 S~g~dLSgLFe~ 26 (123)
T 2zfd_B 15 SPGFNLSGLFGD 26 (123)
T ss_dssp STTSSSGGGGGG
T ss_pred CcCCCchHhcCc
Confidence 578999999943
No 8
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=21.86 E-value=93 Score=16.47 Aligned_cols=48 Identities=10% Similarity=0.001 Sum_probs=31.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhcCCCCCCceecCCCcchhHHHHHHHHHh
Q psy17374 20 NPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPHAFLSVLKQHT 69 (71)
Q Consensus 20 ~~~~w~~~l~~R~~~l~~w~~~~~~~~~~~~wLs~lF~P~~FLtA~~Q~~ 69 (71)
++..|++. .|++.........+.....+-...||..+..|-.+.|+.+
T Consensus 47 s~~~~~~~--~Rl~~A~~lL~~~~~si~~iA~~~Gf~~~s~F~r~Fk~~~ 94 (103)
T 3lsg_A 47 PFQDYLLQ--KRMEKAKLLLLTTELKNYEIAEQVGFEDVNYFITKFKKYY 94 (103)
T ss_dssp CHHHHHHH--HHHHHHHHHHHHCCCCHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CHHHHHHH--HHHHHHHHHHHCCCCCHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 57888874 4555555554431211234556789999999999998865
No 9
>2l1n_A Uncharacterized protein; DUF1823, hypothetical protein, cyanobacteria, structural GEN PSI-biology, protein structure initiative; NMR {Synechococcus elongatus}
Probab=20.44 E-value=46 Score=19.84 Aligned_cols=16 Identities=13% Similarity=0.480 Sum_probs=12.2
Q ss_pred CCCCchhhhhhcc-CCC
Q psy17374 4 NDYTPDDWQSIWS-GSG 19 (71)
Q Consensus 4 ~~~vP~~W~~~~~-~~~ 19 (71)
.++||+.|...|+ +|.
T Consensus 44 ~~~v~~~W~e~yPepP~ 60 (120)
T 2l1n_A 44 TDLVAPEWRQDYPEPPD 60 (120)
T ss_dssp CTTSCHHHHTTCSSCCC
T ss_pred CCCCChHHHHhCCCCcc
Confidence 4669999998887 443
No 10
>3r4h_A Coiled coil helix CC-TET-PHI22; coiled coil domain, tetramer, KIH interactions, synthetic BI NOVO protein; HET: PHI; 2.70A {Synthetic}
Probab=19.67 E-value=50 Score=15.02 Aligned_cols=9 Identities=44% Similarity=0.571 Sum_probs=5.8
Q ss_pred HHHHHHHhc
Q psy17374 62 LSVLKQHTA 70 (71)
Q Consensus 62 LtA~~Q~~A 70 (71)
|.|++|+.|
T Consensus 4 laaikqela 12 (34)
T 3r4h_A 4 LAAIKQELA 12 (34)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 567777654
Done!