Query psy17374
Match_columns 71
No_of_seqs 117 out of 657
Neff 7.0
Searched_HMMs 13730
Date Fri Aug 16 20:50:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17374.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/17374hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e43a2 c.1.8.1 (A:1-393) Bact 26.4 39 0.0028 20.7 3.9 34 15-56 11-44 (393)
2 d1ufwa_ d.58.7.1 (A:) Synaptoj 25.6 17 0.0012 19.5 1.7 15 56-70 32-46 (95)
3 d1nr4a_ d.9.1.1 (A:) Thymus an 20.7 21 0.0015 17.4 1.3 15 20-34 51-66 (67)
4 d2elca1 a.46.2.1 (A:1-52) Anth 19.2 22 0.0016 16.4 1.2 9 59-67 36-44 (52)
5 d1yf2a2 d.287.1.2 (A:221-425) 18.8 9.1 0.00067 20.9 -0.4 9 5-13 2-10 (205)
6 d1em2a_ d.129.3.2 (A:) Lipid t 18.5 15 0.0011 20.8 0.5 31 3-34 181-211 (214)
7 d3bula2 c.23.6.1 (A:741-896) M 17.8 47 0.0034 18.5 2.6 23 48-70 36-58 (156)
8 d1o17a1 a.46.2.1 (A:1-70) Anth 16.5 32 0.0024 16.3 1.5 9 59-67 39-47 (70)
9 d1huna_ d.9.1.1 (A:) Macrophag 16.4 37 0.0027 16.4 1.7 14 20-33 53-67 (69)
10 d1tvxa_ d.9.1.1 (A:) Platelet 15.6 44 0.0032 15.9 1.9 14 20-33 47-61 (64)
No 1
>d1e43a2 c.1.8.1 (A:1-393) Bacterial alpha-amylase {Chimera (Bacillus amyloliquefaciens) and (Bacillus licheniformis) [TaxId: 1390]}
Probab=26.36 E-value=39 Score=20.70 Aligned_cols=34 Identities=9% Similarity=0.219 Sum_probs=23.0
Q ss_pred ccCCCChHHHHHHHHHHHHHHHHHHhhcCCCCCCceecCCCc
Q psy17374 15 WSGSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLF 56 (71)
Q Consensus 15 ~~~~~~~~~w~~~l~~R~~~l~~w~~~~~~~~~~~~wLs~lF 56 (71)
|+.|..-+.| +++++|+..|++. |. ..|||+-+|
T Consensus 11 w~~~~~gg~~-~gi~~kLdylk~L----Gv---taI~L~Pi~ 44 (393)
T d1e43a2 11 WYTPNDGQHW-KRLQNDAEHLSDI----GI---TAVWIPPAY 44 (393)
T ss_dssp TTCCSSSCHH-HHHHHHHHHHHHH----TC---CEEEECCCS
T ss_pred cCCCCCCCCH-HHHHHHHHHHHHc----CC---CEEEeCcCc
Confidence 4556654544 9999999999887 42 456665554
No 2
>d1ufwa_ d.58.7.1 (A:) Synaptojanin 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=25.63 E-value=17 Score=19.50 Aligned_cols=15 Identities=20% Similarity=0.164 Sum_probs=13.0
Q ss_pred cchhHHHHHHHHHhc
Q psy17374 56 FHPHAFLSVLKQHTA 70 (71)
Q Consensus 56 F~P~~FLtA~~Q~~A 70 (71)
++|+.|.+++.|..+
T Consensus 32 ~FDe~l~~~Llq~l~ 46 (95)
T d1ufwa_ 32 EFPEDLRTELMQTLG 46 (95)
T ss_dssp SCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHh
Confidence 689999999999864
No 3
>d1nr4a_ d.9.1.1 (A:) Thymus and activation-regulated chemokine, TRAC {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.72 E-value=21 Score=17.40 Aligned_cols=15 Identities=13% Similarity=0.164 Sum_probs=12.2
Q ss_pred Ch-HHHHHHHHHHHHH
Q psy17374 20 NP-LLYIRSVVSRAVM 34 (71)
Q Consensus 20 ~~-~~w~~~l~~R~~~ 34 (71)
+| ..|+++++++++.
T Consensus 51 dP~~~WVq~~i~~l~~ 66 (67)
T d1nr4a_ 51 DPNNKRVKNAVKYLQS 66 (67)
T ss_dssp CTTSHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHhc
Confidence 55 8899999888765
No 4
>d2elca1 a.46.2.1 (A:1-52) Anthranilate phosphoribosyltransferase (TrpD) {Thermus thermophilus [TaxId: 274]}
Probab=19.15 E-value=22 Score=16.35 Aligned_cols=9 Identities=22% Similarity=0.272 Sum_probs=6.5
Q ss_pred hHHHHHHHH
Q psy17374 59 HAFLSVLKQ 67 (71)
Q Consensus 59 ~~FLtA~~Q 67 (71)
.+||+|+|.
T Consensus 36 aafL~al~~ 44 (52)
T d2elca1 36 AGLLVALSL 44 (52)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 478888774
No 5
>d1yf2a2 d.287.1.2 (A:221-425) Bipartite methylase S protein MJ0130 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=18.82 E-value=9.1 Score=20.90 Aligned_cols=9 Identities=33% Similarity=0.988 Sum_probs=5.1
Q ss_pred CCCchhhhh
Q psy17374 5 DYTPDDWQS 13 (71)
Q Consensus 5 ~~vP~~W~~ 13 (71)
|++|..|..
T Consensus 2 G~iP~~W~~ 10 (205)
T d1yf2a2 2 GEIPEDWEV 10 (205)
T ss_dssp SSEETTCEE
T ss_pred CCcCCCCEE
Confidence 556666643
No 6
>d1em2a_ d.129.3.2 (A:) Lipid transport domain of Mln64 {Human (Homo sapiens) [TaxId: 9606]}
Probab=18.50 E-value=15 Score=20.82 Aligned_cols=31 Identities=10% Similarity=-0.029 Sum_probs=14.4
Q ss_pred CCCCCchhhhhhccCCCChHHHHHHHHHHHHH
Q psy17374 3 PNDYTPDDWQSIWSGSGNPLLYIRSVVSRAVM 34 (71)
Q Consensus 3 ~~~~vP~~W~~~~~~~~~~~~w~~~l~~R~~~ 34 (71)
+.|.+|. |.-..-....+..++++|.++++.
T Consensus 181 p~G~iP~-~lvn~~~~~~~~~~~~~Lrk~~~k 211 (214)
T d1em2a_ 181 LKGRLPR-YLIHQSLAATMFEFAFHLRQRISE 211 (214)
T ss_dssp CCSSSCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCH-HHHHHHHHHhHHHHHHHHHHHHHH
Confidence 4566664 322121122245566666655554
No 7
>d3bula2 c.23.6.1 (A:741-896) Methionine synthase, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=17.77 E-value=47 Score=18.54 Aligned_cols=23 Identities=26% Similarity=0.267 Sum_probs=20.2
Q ss_pred CceecCCCcchhHHHHHHHHHhc
Q psy17374 48 SPVDLSGLFHPHAFLSVLKQHTA 70 (71)
Q Consensus 48 ~~~wLs~lF~P~~FLtA~~Q~~A 70 (71)
++++|+.-.-|+.|+.|++++-+
T Consensus 36 ~Vi~LG~~~p~e~~~~~~~~~~~ 58 (156)
T d3bula2 36 EIVDLGVMVPAEKILRTAKEVNA 58 (156)
T ss_dssp EEEECCSSBCHHHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhhCC
Confidence 78999999999999999998644
No 8
>d1o17a1 a.46.2.1 (A:1-70) Anthranilate phosphoribosyltransferase (TrpD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=16.53 E-value=32 Score=16.35 Aligned_cols=9 Identities=33% Similarity=0.445 Sum_probs=6.4
Q ss_pred hHHHHHHHH
Q psy17374 59 HAFLSVLKQ 67 (71)
Q Consensus 59 ~~FLtA~~Q 67 (71)
.+||+|++.
T Consensus 39 aafL~al~~ 47 (70)
T d1o17a1 39 SAILVALRM 47 (70)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 478888775
No 9
>d1huna_ d.9.1.1 (A:) Macrophage inflammatory protein, MIP {Human (Homo sapiens), 1-beta [TaxId: 9606]}
Probab=16.44 E-value=37 Score=16.45 Aligned_cols=14 Identities=14% Similarity=0.259 Sum_probs=11.4
Q ss_pred Ch-HHHHHHHHHHHH
Q psy17374 20 NP-LLYIRSVVSRAV 33 (71)
Q Consensus 20 ~~-~~w~~~l~~R~~ 33 (71)
+| ..|+++++++++
T Consensus 53 dP~~~WVq~~i~~l~ 67 (69)
T d1huna_ 53 DPSESWVQEYVYDLE 67 (69)
T ss_dssp CTTSHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHh
Confidence 45 789999988875
No 10
>d1tvxa_ d.9.1.1 (A:) Platelet basic protein, PBP {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.56 E-value=44 Score=15.88 Aligned_cols=14 Identities=21% Similarity=0.527 Sum_probs=11.4
Q ss_pred Ch-HHHHHHHHHHHH
Q psy17374 20 NP-LLYIRSVVSRAV 33 (71)
Q Consensus 20 ~~-~~w~~~l~~R~~ 33 (71)
+| ..|++++++++.
T Consensus 47 dP~~~WVq~li~kll 61 (64)
T d1tvxa_ 47 DPDAPRIKKIVQKKL 61 (64)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHH
Confidence 56 899999988875
Done!