RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy17374
         (71 letters)



>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
            microtubles, motor protein; HET: ADP SPM; 2.81A
            {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
          Length = 3245

 Score = 44.1 bits (104), Expect = 5e-07
 Identities = 13/73 (17%), Positives = 27/73 (36%), Gaps = 10/73 (13%)

Query: 4    NDYTPDDWQSIWSGSGNPL-LYIRSVVSRAVMVHKCYQ----VSSTYWRSPVDLSGLFHP 58
                P +W+         L ++I     R   + +  +     S   W     L GL +P
Sbjct: 3058 KGIVPKEWKWYSVPETISLSVWISDFSKRMQQLSEISESSDYSSIQVW-----LGGLLNP 3112

Query: 59   HAFLSVLKQHTAR 71
             A+++  +Q  ++
Sbjct: 3113 EAYITATRQSASQ 3125


>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics,
           PSI-biology, midwest center for structu genomics, MCSG;
           HET: MSE; 2.15A {Planctomyces limnophilus}
          Length = 290

 Score = 26.3 bits (58), Expect = 0.87
 Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 15/66 (22%)

Query: 14  IWSGSGNPLLYIRSVVSRAVMVHKCYQVSSTYWRSPVDLSGLFHPH-----------AFL 62
           I  G+GNP+  +R V      +H         W    +    +              A+L
Sbjct: 189 ILYGTGNPIEALRKVARYVRSIH----CKDALWAPVNERGKSWGQEVALGTGDVGMEAYL 244

Query: 63  SVLKQH 68
           + L + 
Sbjct: 245 TTLWEI 250


>4ffh_A Levan fructotransferase; glycoside hydrolase; HET: SUC; 2.20A
          {Arthrobacter ureafaciens} PDB: 4ffi_A* 4ffg_A* 4fff_A
          Length = 492

 Score = 23.5 bits (51), Expect = 7.8
 Identities = 4/12 (33%), Positives = 5/12 (41%)

Query: 7  TPDDWQSIWSGS 18
                 +WSGS
Sbjct: 61 PLRPDFPVWSGS 72


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.322    0.134    0.456 

Gapped
Lambda     K      H
   0.267   0.0675    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,124,838
Number of extensions: 46960
Number of successful extensions: 122
Number of sequences better than 10.0: 1
Number of HSP's gapped: 122
Number of HSP's successfully gapped: 6
Length of query: 71
Length of database: 6,701,793
Length adjustment: 41
Effective length of query: 30
Effective length of database: 5,557,032
Effective search space: 166710960
Effective search space used: 166710960
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.5 bits)