BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy17376
(227 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M0C|C Chain C, The X-Ray Crystal Structure Of Pcsk9 In Complex With The
Ldl Receptor
Length = 791
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-- 88
R FQC +CI +C+G EC +G DES C + C +F C
Sbjct: 26 RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----------LSVTCKSGDFSCGGR 75
Query: 89 -NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNS 147
N CI RCD DC+ G DE C C ++C + CI VC+ DC D S
Sbjct: 76 VNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGS 135
Query: 148 DEMECSLFT 156
DE C + T
Sbjct: 136 DEASCPVLT 144
Score = 63.5 bits (153), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
F C +CI + C+G P+C + DE C P+EF+CS+ CI
Sbjct: 199 FHCLSGECIHSSWRCDGGPDCKDKSDEENCAVAT------------CRPDEFQCSDGNCI 246
Query: 93 DHLKRCDRTQDCELGEDEIDC-KTYMCPV-SHYKCSNDFCIPLDKVCNFIDDCGDNSDE 149
++CDR DC+ DE+ C +C + +KC + CI LDKVCN DC D SDE
Sbjct: 247 HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDE 305
Score = 63.2 bits (152), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC-SNSCI 92
FQCN + CI + C+ P+C +G DE C + +P C EF C S CI
Sbjct: 150 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSP--CSAFEFHCLSGECI 207
Query: 93 DHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
RCD DC+ DE +C C ++CS+ CI + C+ DC D SDE+ C
Sbjct: 208 HSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 267
Query: 153 SLFTF 157
T
Sbjct: 268 VNVTL 272
Score = 47.0 bits (110), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 59/138 (42%), Gaps = 23/138 (16%)
Query: 30 SRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC-S 88
S+ F+C+ +CI +C+ +C +G DE A C L C P F+C S
Sbjct: 107 SQDEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASC----------PVLTCGPASFQCNS 154
Query: 89 NSCIDHLKRCDRTQDCELGEDE----------IDCKTYMCPVSHYKCSNDFCIPLDKVCN 138
++CI L CD DCE G DE + C + C + CI C+
Sbjct: 155 STCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCD 214
Query: 139 FIDDCGDNSDEMECSLFT 156
DC D SDE C++ T
Sbjct: 215 GGPDCKDKSDEENCAVAT 232
Score = 28.1 bits (61), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCID 93
F+C+ +CI +CN +C + DE + CG CL N CS+ C D
Sbjct: 279 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNE----------CLDNNGGCSHVCND 328
>pdb|1N7D|A Chain A, Extracellular Domain Of The Ldl Receptor
Length = 699
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 56/129 (43%), Gaps = 13/129 (10%)
Query: 31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-- 88
R FQC +CI +C+G EC +G DES C + C +F C
Sbjct: 8 RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----------LSVTCKSGDFSCGGR 57
Query: 89 -NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNS 147
N CI RCD DC+ G DE C C ++C + CI VC+ DC D S
Sbjct: 58 VNRCIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGS 117
Query: 148 DEMECSLFT 156
DE C + T
Sbjct: 118 DEASCPVLT 126
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 59/119 (49%), Gaps = 15/119 (12%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
F C +CI + C+G P+C + DE C P+EF+CS+ CI
Sbjct: 181 FHCLSGECIHSSWRCDGGPDCKDKSDEENCAVAT------------CRPDEFQCSDGNCI 228
Query: 93 DHLKRCDRTQDCELGEDEIDC-KTYMCPV-SHYKCSNDFCIPLDKVCNFIDDCGDNSDE 149
++CDR DC+ DE+ C +C + +KC + CI LDKVCN DC D SDE
Sbjct: 229 HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDE 287
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/125 (34%), Positives = 58/125 (46%), Gaps = 3/125 (2%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC-SNSCI 92
FQCN + CI + C+ P+C +G DE C + +P C EF C S CI
Sbjct: 132 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSP--CSAFEFHCLSGECI 189
Query: 93 DHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
RCD DC+ DE +C C ++CS+ CI + C+ DC D SDE+ C
Sbjct: 190 HSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 249
Query: 153 SLFTF 157
T
Sbjct: 250 VNVTL 254
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 58/138 (42%), Gaps = 23/138 (16%)
Query: 30 SRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC-S 88
S+ F+C+ +CI +C+ +C +G DE+ L C P F+C S
Sbjct: 89 SQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPV------------LTCGPASFQCNS 136
Query: 89 NSCIDHLKRCDRTQDCELGEDE----------IDCKTYMCPVSHYKCSNDFCIPLDKVCN 138
++CI L CD DCE G DE + C + C + CI C+
Sbjct: 137 STCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCD 196
Query: 139 FIDDCGDNSDEMECSLFT 156
DC D SDE C++ T
Sbjct: 197 GGPDCKDKSDEENCAVAT 214
Score = 28.1 bits (61), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCID 93
F+C+ +CI +CN +C + DE + CG CL N CS+ C D
Sbjct: 261 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNE----------CLDNNGGCSHVCND 310
>pdb|2FYJ|A Chain A, Nmr Solution Structure Of Calcium-Loaded Lrp Double Module
pdb|2FYL|B Chain B, Haddock Model Of The Complex Between Double Module Of Lrp,
Cr56, And First Domain Of Receptor Associated Protein,
Rap- D1
Length = 82
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/77 (41%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 80 CLPNEFRC-SNSCIDHLKRCDRTQDCELGEDE-IDCKTYMC-PVSHYKCSNDFCIPLDKV 136
C PN+F C S CI CD DC DE C C P++ + C+N CI ++
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWR 64
Query: 137 CNFIDDCGDNSDEMECS 153
C+ +DCGDNSDE CS
Sbjct: 65 CDNDNDCGDNSDEAGCS 81
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 35/83 (42%), Gaps = 13/83 (15%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLP-NEFRCSNS-C 91
F C +CI + C+ +CG+ DES + P C P +F C+N C
Sbjct: 10 FSCASGRCIPISWTCDLDDDCGDRSDESASC--------AYPT---CFPLTQFTCNNGRC 58
Query: 92 IDHLKRCDRTQDCELGEDEIDCK 114
I+ RCD DC DE C
Sbjct: 59 ININWRCDNDNDCGDNSDEAGCS 81
>pdb|2FCW|B Chain B, Structure Of A Complex Between The Pair Of The Ldl
Receptor Ligand-Binding Modules 3-4 And The Receptor
Associated Protein (Rap)
Length = 80
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Query: 80 CLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCN 138
C EFRC + CI CD +DC G DE C C + ++C++ CIP C+
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACD 62
Query: 139 FIDDCGDNSDEM 150
DC D SDE
Sbjct: 63 NDPDCEDGSDEW 74
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 13/82 (15%)
Query: 30 SRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC-S 88
S+ F+C+ +CI +C+ +C +G DE+ L C P F+C S
Sbjct: 4 SQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCP------------VLTCGPASFQCNS 51
Query: 89 NSCIDHLKRCDRTQDCELGEDE 110
++CI L CD DCE G DE
Sbjct: 52 STCIPQLWACDNDPDCEDGSDE 73
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
FQCN + CI + C+ P+C +G DE C
Sbjct: 47 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 78
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
Query: 117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTF--LSFRLNKKI 166
C + ++C + CI VC+ DC D SDE C + T SF+ N
Sbjct: 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSST 53
>pdb|1F5Y|A Chain A, Nmr Structure Of A Concatemer Of The First And Second
Ligand-Binding Modules Of The Human Ldl Receptor
Length = 85
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 37/86 (43%), Gaps = 13/86 (15%)
Query: 31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-- 88
R FQC +CI +C+G EC +G DES C + C +F C
Sbjct: 10 RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC----------LSVTCKSGDFSCGGR 59
Query: 89 -NSCIDHLKRCDRTQDCELGEDEIDC 113
N CI RCD DC+ G DE C
Sbjct: 60 VNRCIPQFWRCDGQVDCDNGSDEQGC 85
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 80 CLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEID--CKTYMCPVSHYKCSN--DFCIPLD 134
C NEF+C + CI + CD + +C+ G DE C + C + C + CIP
Sbjct: 8 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 67
Query: 135 KVCNFIDDCGDNSDEMEC 152
C+ DC + SDE C
Sbjct: 68 WRCDGQVDCDNGSDEQGC 85
>pdb|2LGP|A Chain A, Solution Structure Of La45 From Ldlr
Length = 94
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 38/83 (45%), Gaps = 3/83 (3%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC-SNSCI 92
FQCN + CI + C+ P+C +G DE C + +P C EF C S CI
Sbjct: 12 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSP--CSAFEFHCLSGECI 69
Query: 93 DHLKRCDRTQDCELGEDEIDCKT 115
RCD DC+ DE +C
Sbjct: 70 HSSWRCDGGPDCKDKSDEENCAV 92
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 39/90 (43%), Gaps = 11/90 (12%)
Query: 78 LGCLPNEFRC-SNSCIDHLKRCDRTQDCELGEDE----------IDCKTYMCPVSHYKCS 126
L C P F+C S++CI L CD DCE G DE + C + C
Sbjct: 5 LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCL 64
Query: 127 NDFCIPLDKVCNFIDDCGDNSDEMECSLFT 156
+ CI C+ DC D SDE C++ T
Sbjct: 65 SGECIHSSWRCDGGPDCKDKSDEENCAVAT 94
>pdb|2XRC|A Chain A, Human Complement Factor I
pdb|2XRC|B Chain B, Human Complement Factor I
pdb|2XRC|C Chain C, Human Complement Factor I
pdb|2XRC|D Chain D, Human Complement Factor I
Length = 565
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 85 FRCSNS-CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDC 143
F+C N I +K CD DC DE+ CK C + C + CIP CN DC
Sbjct: 209 FQCVNGKYISQMKACDGINDCGDQSDELCCKA--CQGKGFHCKSGVCIPSQYQCNGEVDC 266
Query: 144 GDNSDEMECSLFTFLS 159
DE+ C+ F ++
Sbjct: 267 ITGEDEVGCAGFASVA 282
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 26/85 (30%), Positives = 37/85 (43%), Gaps = 15/85 (17%)
Query: 33 IFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC-SNSC 91
FQC + I + C+GI +CG+ DE +C + C F C S C
Sbjct: 208 FFQCVNGKYISQMKACDGINDCGDQSDE---LCCK-----------ACQGKGFHCKSGVC 253
Query: 92 IDHLKRCDRTQDCELGEDEIDCKTY 116
I +C+ DC GEDE+ C +
Sbjct: 254 IPSQYQCNGEVDCITGEDEVGCAGF 278
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 109 DEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNKKIPR 168
+E DCK + ++C + CI CN +DCGDNSDE +C + R IP
Sbjct: 115 EEADCK------NKFRCDSGRCIARKLECNGENDCGDNSDERDCGRTKAVCTRKYNPIP- 167
Query: 169 KSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSR 206
S+ + + A E D G +K SR
Sbjct: 168 -SVQLMGNGFHFLAGEPRGEVLDNSFTGGICKTVKSSR 204
>pdb|3P5C|L Chain L, The Structure Of The LdlrPCSK9 COMPLEX REVEALS THE
RECEPTOR IN AN Extended Conformation
Length = 440
Score = 34.3 bits (77), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 123 YKCSNDFCIPLDKVCNFIDDCGDNSDE 149
+KC + CI LDKVCN DC D SDE
Sbjct: 7 FKCHSGECITLDKVCNMARDCRDWSDE 33
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 10/60 (16%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCID 93
F+C+ +CI +CN +C + DE + CG CL N CS+ C D
Sbjct: 7 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNE----------CLDNNGGCSHVCND 56
>pdb|2M0P|A Chain A, Solution Structure Of The Tenth Complement Type Repeat Of
Human Megalin
Length = 52
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
C + Y C N CI + VC+ +DCGD SDE C+
Sbjct: 7 CLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN 42
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 77 PLGCLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDCKT 115
P CL ++ C N CI CD DC G DE +C +
Sbjct: 4 PASCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCNS 43
>pdb|1XFE|A Chain A, Solution Structure Of The La7-Egfa Pair From The Ldl
Receptor
Length = 83
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 123 YKCSNDFCIPLDKVCNFIDDCGDNSDE 149
+KC + CI LDKVCN DC D SDE
Sbjct: 12 FKCHSGECITLDKVCNMARDCRDWSDE 38
>pdb|1J8E|A Chain A, Crystal Structure Of Ligand-Binding Repeat Cr7 From Lrp
Length = 44
Score = 32.3 bits (72), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 22/37 (59%)
Query: 115 TYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEME 151
++ C + +KC++ CIP C+ +DCGD SDE
Sbjct: 2 SHSCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETH 38
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/40 (42%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 26 SCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
SC+S++ F+CN +CI E C+G +CG+ DE+ A C
Sbjct: 4 SCSSTQ--FKCNSGRCIPEHWTCDGDNDCGDYSDETHANC 41
>pdb|1F8Z|A Chain A, Nmr Structure Of The Sixth Ligand-Binding Module Of The
Ldl Receptor
Length = 39
Score = 32.0 bits (71), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 80 CLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDC 113
C P+EF+CS+ CI ++CDR DC+ DE+ C
Sbjct: 3 CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37
>pdb|1D2J|A Chain A, Ldl Receptor Ligand-Binding Module 6
Length = 40
Score = 31.6 bits (70), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 80 CLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDC 113
C P+EF+CS+ CI ++CDR DC+ DE+ C
Sbjct: 4 CRPDEFQCSDGNCIHGSRQCDREYDCKDLSDEVGC 38
>pdb|2I1P|A Chain A, Solution Structure Of The Twelfth Cysteine-Rich Ligand-
Binding Repeat In Rat Megalin
Length = 48
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
Query: 78 LGCLPNEFRCSN--SCIDHLKRCDRTQDCELGEDEIDCKT 115
L C +F+C++ SCI+ RCD DC DE C T
Sbjct: 5 LNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44
>pdb|1LDL|A Chain A, Three-Dimensional Structure Of A Cysteine-Rich Repeat
From The Low-Density Lipoprotein Receptor
Length = 48
Score = 30.4 bits (67), Expect = 0.86, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
R FQC +CI +C+G EC +G DES C
Sbjct: 10 RNEFQCQDGKCISYKWVCDGSAECQDGSDESQETC 44
>pdb|2KRI|B Chain B, Structure Of A Complex Between Domain V Of Beta2-
Glycoprotein I And The Fourth Ligand-Binding Module From
Ldlr Determined With Haddock
Length = 40
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 80 CLPNEFRC-SNSCIDHLKRCDRTQDCELGEDE 110
C P F+C S++CI L CD DCE G DE
Sbjct: 2 CGPASFQCNSSTCIPQLWACDNDPDCEDGSDE 33
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
FQCN + CI + C+ P+C +G DE C
Sbjct: 7 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 38
>pdb|2KNY|A Chain A, Fusion Construct Of Cr17 From Lrp-1 And Apoe Residues
130-14
Length = 80
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 34 FQCNQTQ-CILETSLCNGIPECGNGRDESVAMCGEYN 69
F C T C+ E LC+G +C +G DES+A YN
Sbjct: 14 FSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYN 50
>pdb|3A7Q|B Chain B, Structural Basis For Specific Recognition Of Reelin By Its
Receptors
Length = 44
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
C ++C N+ CIP C+ DDC D+SDE +C
Sbjct: 8 CEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
>pdb|2GTL|N Chain N, Lumbricus Erythrocruorin At 3.5a Resolution
Length = 220
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 32/76 (42%), Gaps = 11/76 (14%)
Query: 31 RPIFQC--NQTQCILETSLCNGIPECGNGRDE-------SVAMCGEYNIRDLLPNPLGCL 81
+ FQC N+ +CI + +C+G +C N DE SV G N+ GCL
Sbjct: 55 KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAG--NVFSGTSTWHGCL 112
Query: 82 PNEFRCSNSCIDHLKR 97
E + I KR
Sbjct: 113 AREDHVTRITITASKR 128
>pdb|2KNX|A Chain A, Solution Structure Of Complement Repeat Cr17 From Lrp-1
Length = 50
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 34 FQCNQTQ-CILETSLCNGIPECGNGRDESVAMCGEYN 69
F C T C+ E LC+G +C +G DES+A YN
Sbjct: 12 FSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYN 48
>pdb|2JM4|A Chain A, The Solution Nmr Structure Of The Relaxin (Rxfp1) Receptor
Ldla Module
Length = 43
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Query: 118 CPVSHYKCSN-DFCIPLDKVCNFIDDCGDNSDEMECS 153
C + ++ C N C+P CN +DDCG+ +DE C
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNCG 43
>pdb|1D2L|A Chain A, Nmr Solution Structure Of Complement-Like Repeat Cr3 From
The Low Density Lipoprotein Receptor-Related Protein
(Lrp) . Evidence For Specific Binding To The Receptor
Binding Domain Of Human Alpha-2 Macroglobulin
Length = 45
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 76 NPLGCLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEI 111
+P C P EF C+NS CI +CD DC DE
Sbjct: 2 SPPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEA 38
Score = 27.7 bits (60), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEY 68
F C ++CI E C+G +C + DE+ A+C ++
Sbjct: 11 FACANSRCIQERWKCDGDNDCLDNSDEAPALCHQH 45
>pdb|1JRF|A Chain A, Nmr Solution Structure Of The Viral Receptor Domain Of Tva
Length = 47
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 80 CLPNEFRCS------NSCIDHLKRCDRTQDCELGEDEIDCKT 115
C P +FRCS C CD DC+ G DE C T
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 118 CPVSHYKCS-----NDFCIPLDKVCNFIDDCGDNSDEMECSL 154
CP ++CS + C P D +C+ DC D DE C
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
>pdb|1LDR|A Chain A, Second Repeat Of The Ldl Receptor Ligand-Binding Domain
Length = 43
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 80 CLPNEFRCS---NSCIDHLKRCDRTQDCELGEDEIDC 113
C +F C N CI RCD DC+ G DE C
Sbjct: 7 CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 43
>pdb|3OJY|A Chain A, Crystal Structure Of Human Complement Component C8
Length = 554
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 109 DEIDCKTYMCPVSHYKCSNDF-------CIPLDKVCNFIDDCGDNSDEMEC 152
D+ C + V +C DF C+ VCN DC D SDE +C
Sbjct: 50 DQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDDC 100
>pdb|1K7B|A Chain A, Nmr Solution Structure Of Stva47, The Viral-Binding Domain
Of Tva
Length = 47
Score = 26.9 bits (58), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 118 CPVSHYKCS-----NDFCIPLDKVCNFIDDCGDNSDEMECS 153
CP ++CS + C P D +C+ DC D DE C
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.453
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,949,373
Number of Sequences: 62578
Number of extensions: 280236
Number of successful extensions: 602
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 455
Number of HSP's gapped (non-prelim): 108
length of query: 227
length of database: 14,973,337
effective HSP length: 95
effective length of query: 132
effective length of database: 9,028,427
effective search space: 1191752364
effective search space used: 1191752364
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.9 bits)