Query psy17376
Match_columns 227
No_of_seqs 229 out of 1347
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:53:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1215|consensus 99.1 2.1E-10 4.5E-15 115.7 7.7 152 10-165 117-309 (877)
2 PF00057 Ldl_recept_a: Low-den 99.1 7.3E-11 1.6E-15 73.8 2.7 36 117-152 2-37 (37)
3 cd00112 LDLa Low Density Lipop 99.0 1.3E-10 2.8E-15 71.8 2.6 35 118-152 1-35 (35)
4 PF00057 Ldl_recept_a: Low-den 99.0 1.9E-10 4.1E-15 71.9 3.0 33 31-65 5-37 (37)
5 cd00112 LDLa Low Density Lipop 99.0 2E-10 4.3E-15 70.9 2.6 33 31-65 3-35 (35)
6 PF12999 PRKCSH-like: Glucosid 98.8 3.7E-09 8E-14 87.5 4.3 67 81-149 34-110 (176)
7 smart00192 LDLa Low-density li 98.8 4.2E-09 9.1E-14 64.1 2.8 30 31-60 4-33 (33)
8 PF12999 PRKCSH-like: Glucosid 98.7 1.2E-08 2.6E-13 84.5 4.9 66 31-110 35-110 (176)
9 smart00192 LDLa Low-density li 98.7 9.6E-09 2.1E-13 62.5 3.1 32 118-149 2-33 (33)
10 KOG1215|consensus 98.5 1.6E-07 3.4E-12 95.0 5.6 97 32-139 221-319 (877)
11 KOG2397|consensus 97.4 0.00016 3.4E-09 68.0 3.8 68 31-112 42-115 (480)
12 KOG2397|consensus 97.2 0.00028 6E-09 66.4 3.6 67 83-151 43-115 (480)
13 KOG3509|consensus 95.8 0.0084 1.8E-07 61.2 3.8 103 40-152 2-110 (964)
14 KOG3509|consensus 93.0 0.09 1.9E-06 53.9 3.7 104 3-114 3-111 (964)
15 PF04885 Stig1: Stigma-specifi 39.4 74 0.0016 25.4 5.0 40 53-114 76-116 (136)
No 1
>KOG1215|consensus
Probab=99.08 E-value=2.1e-10 Score=115.69 Aligned_cols=152 Identities=25% Similarity=0.453 Sum_probs=111.8
Q ss_pred eeecCCCCCCCcCC----CccCCCCCCceecC--CCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCC---------
Q psy17376 10 YHKVLDVPRTQARQ----KVSCNSSRPIFQCN--QTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLL--------- 74 (227)
Q Consensus 10 cdg~~dc~~~~d~~----~~~C~~~~~~F~C~--~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~--------- 74 (227)
..+....+.+.++. ...|. ..+|.|. +++||+..|+|||..+|.+|+|| .+|.........
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~c~~~~~~Cip~~~~cd~~~~C~dg~de--~~~~~~~~~~~~~~~~~~~~~ 192 (877)
T KOG1215|consen 117 PSSQPLAPDPCAESGNGPCSHCC--LDKFSCRTGSCKCIPGDWLCDGEADCPDGSDE--LNCAVRRCEPRGASLDCIVAI 192 (877)
T ss_pred cCCCCCCCCcccccCCCCCcccc--CCCCCCcCccccCCCCceeCCCCCccccchhh--hcccccccCccccccccceee
Confidence 33444455555553 23333 6889999 78999999999999999999999 677411100000
Q ss_pred -----------------CCCCCC---CCCceecC--CceecCCCccCCcccCCCCCcc--cCCCCCCcCCCceecCCCce
Q psy17376 75 -----------------PNPLGC---LPNEFRCS--NSCIDHLKRCDRTQDCELGEDE--IDCKTYMCPVSHYKCSNDFC 130 (227)
Q Consensus 75 -----------------~~~~~C---~~~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE--~~C~~~~C~~~~f~C~~g~C 130 (227)
.....+ ....++|. .+||...++|||..||.+++|| .++....|...++.|.++.|
T Consensus 193 ~~~d~~~~~~~~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~~~ 272 (877)
T KOG1215|consen 193 KVCDIQHDCADDYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADGDC 272 (877)
T ss_pred eecCcccccccccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCCCC
Confidence 000001 13567887 4999999999999999999999 46766678888999999999
Q ss_pred ecCCcccCCCCCCCCCCCCCCCCCCCc--CceecCCC
Q psy17376 131 IPLDKVCNFIDDCGDNSDEMECSLFTF--LSFRLNKK 165 (227)
Q Consensus 131 i~~~~~CDg~~DC~DgsDE~~C~~~~C--~~f~C~~~ 165 (227)
++..++|+|..||++|+||.+|....+ ..|.|..+
T Consensus 273 ~~~~~~~~g~~d~pdg~de~~~~~~~~~~~~~d~~~~ 309 (877)
T KOG1215|consen 273 SDRQKLCDGDLDCPDGLDEDYCKKKLYWSMNVDGSGR 309 (877)
T ss_pred ccceEEecCccCCCCcccccccccceeeeeecccCCc
Confidence 999999999999999999998875433 45555543
No 2
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=99.08 E-value=7.3e-11 Score=73.81 Aligned_cols=36 Identities=47% Similarity=1.048 Sum_probs=27.4
Q ss_pred CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376 117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152 (227)
Q Consensus 117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 152 (227)
.|+..+|+|.++.||+..++|||+.||.|||||.+|
T Consensus 2 ~C~~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE~~C 37 (37)
T PF00057_consen 2 TCPPGEFRCGNGQCIPKSWVCDGIPDCPDGSDEQNC 37 (37)
T ss_dssp SSSTTEEEETTSSEEEGGGTTSSSCSSSSSTTTSSH
T ss_pred cCcCCeeEcCCCCEEChHHcCCCCCCCCCCcccccC
Confidence 466777888777788888888888888888887654
No 3
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=99.04 E-value=1.3e-10 Score=71.78 Aligned_cols=35 Identities=51% Similarity=1.145 Sum_probs=27.2
Q ss_pred cCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152 (227)
Q Consensus 118 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 152 (227)
|++.+|+|.+++||+..++|||+.||.|||||.+|
T Consensus 1 C~~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE~~C 35 (35)
T cd00112 1 CPPNEFRCANGRCIPSSWVCDGEDDCGDGSDEENC 35 (35)
T ss_pred CCCCeEEcCCCCeeCHHHcCCCccCCCCCcccccC
Confidence 34567888888888888888888888888888654
No 4
>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells. The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....
Probab=99.02 E-value=1.9e-10 Score=71.92 Aligned_cols=33 Identities=42% Similarity=1.033 Sum_probs=31.2
Q ss_pred CCceecCCCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376 31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC 65 (227)
Q Consensus 31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C 65 (227)
..+|+|.++.||+..++|||+.||.||||| .+|
T Consensus 5 ~~~f~C~~~~CI~~~~~CDg~~DC~dgsDE--~~C 37 (37)
T PF00057_consen 5 PGEFRCGNGQCIPKSWVCDGIPDCPDGSDE--QNC 37 (37)
T ss_dssp TTEEEETTSSEEEGGGTTSSSCSSSSSTTT--SSH
T ss_pred CCeeEcCCCCEEChHHcCCCCCCCCCCccc--ccC
Confidence 799999999999999999999999999999 664
No 5
>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure
Probab=99.01 E-value=2e-10 Score=70.94 Aligned_cols=33 Identities=36% Similarity=0.945 Sum_probs=30.9
Q ss_pred CCceecCCCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376 31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC 65 (227)
Q Consensus 31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C 65 (227)
.++|+|.+|.||+..++|||+.||.||||| .+|
T Consensus 3 ~~~f~C~~~~Ci~~~~~CDg~~DC~dgsDE--~~C 35 (35)
T cd00112 3 PNEFRCANGRCIPSSWVCDGEDDCGDGSDE--ENC 35 (35)
T ss_pred CCeEEcCCCCeeCHHHcCCCccCCCCCccc--ccC
Confidence 589999999999999999999999999999 555
No 6
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.82 E-value=3.7e-09 Score=87.53 Aligned_cols=67 Identities=33% Similarity=0.516 Sum_probs=58.4
Q ss_pred CCCceecC--Cce-ecCCCccCCcccCCCCCcccCCCCCCcCCCceecCCC----ceecCCcccCCCCC---CCCCCCC
Q psy17376 81 LPNEFRCS--NSC-IDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSND----FCIPLDKVCNFIDD---CGDNSDE 149 (227)
Q Consensus 81 ~~~~f~C~--~~C-i~~~~~CDG~~DC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~D---C~DgsDE 149 (227)
..+.|+|. .+- |+.+++.|++-||.|||||.+-. .|+.+.|+|.+. .-|+.++|-||+-| |-|||||
T Consensus 34 ~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTs--AC~~~~FyC~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE 110 (176)
T PF12999_consen 34 ENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTS--ACSNGKFYCENKGHIPRYIPSSRVNDGICDYDICCDGSDE 110 (176)
T ss_pred CCCceEecCCCCceecHHHccCcceeCCCCCCccccc--cCcCceEeeccCCCCCceeehhhhcCCcCcccccCCCCCC
Confidence 45679998 344 99999999999999999998643 687889999764 48999999999999 9999999
No 7
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.79 E-value=4.2e-09 Score=64.12 Aligned_cols=30 Identities=37% Similarity=0.932 Sum_probs=28.5
Q ss_pred CCceecCCCceEeCCCccCCCCCCCCCCCC
Q psy17376 31 RPIFQCNQTQCILETSLCNGIPECGNGRDE 60 (227)
Q Consensus 31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE 60 (227)
..+|+|.++.||+..++|||+.||.|+|||
T Consensus 4 ~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 4 PGEFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 459999999999999999999999999998
No 8
>PF12999 PRKCSH-like: Glucosidase II beta subunit-like
Probab=98.73 E-value=1.2e-08 Score=84.49 Aligned_cols=66 Identities=26% Similarity=0.444 Sum_probs=57.4
Q ss_pred CCceecCCC-ce-EeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC--C---ceecCCCccCCccc
Q psy17376 31 RPIFQCNQT-QC-ILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS--N---SCIDHLKRCDRTQD 103 (227)
Q Consensus 31 ~~~F~C~~g-~C-I~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~--~---~Ci~~~~~CDG~~D 103 (227)
.+.|.|.+| .= |++.++.|++=||+||||| -+ ...|..+.|.|. | .-|+.++|-||+-|
T Consensus 35 ~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDE--PG------------TsAC~~~~FyC~N~g~~p~~i~~s~VnDGICD 100 (176)
T PF12999_consen 35 NGKFTCLDGSKIVIPFSQINDDYCDCPDGSDE--PG------------TSACSNGKFYCENKGHIPRYIPSSRVNDGICD 100 (176)
T ss_pred CCceEecCCCCceecHHHccCcceeCCCCCCc--cc------------cccCcCceEeeccCCCCCceeehhhhcCCcCc
Confidence 467999986 45 9999999999999999999 22 335888899997 3 78999999999999
Q ss_pred ---CCCCCcc
Q psy17376 104 ---CELGEDE 110 (227)
Q Consensus 104 ---C~dgsDE 110 (227)
|=|||||
T Consensus 101 y~~CCDGSDE 110 (176)
T PF12999_consen 101 YDICCDGSDE 110 (176)
T ss_pred ccccCCCCCC
Confidence 9999999
No 9
>smart00192 LDLa Low-density lipoprotein receptor domain class A. Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.
Probab=98.73 E-value=9.6e-09 Score=62.50 Aligned_cols=32 Identities=53% Similarity=1.180 Sum_probs=24.9
Q ss_pred cCCCceecCCCceecCCcccCCCCCCCCCCCC
Q psy17376 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDE 149 (227)
Q Consensus 118 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE 149 (227)
|+..+|+|.++.||+..++|||+.||.|+|||
T Consensus 2 C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE 33 (33)
T smart00192 2 CPPGEFQCDNGRCIPLSWVCDGVDDCSDGSDE 33 (33)
T ss_pred CCCCeEECCCCCEECchhhCCCcCcCcCCCCC
Confidence 44457888877888888888888888888887
No 10
>KOG1215|consensus
Probab=98.48 E-value=1.6e-07 Score=94.96 Aligned_cols=97 Identities=33% Similarity=0.644 Sum_probs=83.5
Q ss_pred CceecCC-CceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC-CceecCCCccCCcccCCCCCc
Q psy17376 32 PIFQCNQ-TQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGED 109 (227)
Q Consensus 32 ~~F~C~~-g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsD 109 (227)
..|+|.. +.||...++|||..||.+++||...++. -..|...++.|. +.|++..++|||..||.+|+|
T Consensus 221 ~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~----------~~~~~~~e~~~~~~~~~~~~~~~~g~~d~pdg~d 290 (877)
T KOG1215|consen 221 EVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCS----------DATCEAPEIECADGDCSDRQKLCDGDLDCPDGLD 290 (877)
T ss_pred eEEEecCCCcEEeehhccCCCcccccCCcCceeEee----------ccccCCcceeecCCCCccceEEecCccCCCCccc
Confidence 6688887 4899999999999999999999434554 345777899999 999999999999999999999
Q ss_pred ccCCCCCCcCCCceecCCCceecCCcccCC
Q psy17376 110 EIDCKTYMCPVSHYKCSNDFCIPLDKVCNF 139 (227)
Q Consensus 110 E~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg 139 (227)
|.+|....+....|.|.+++ |+...+|++
T Consensus 291 e~~~~~~~~~~~~~d~~~~~-i~~~~~~~~ 319 (877)
T KOG1215|consen 291 EDYCKKKLYWSMNVDGSGRR-ILLSKLCHG 319 (877)
T ss_pred ccccccceeeeeecccCCce-eeecccCcc
Confidence 99998655556788999999 999998876
No 11
>KOG2397|consensus
Probab=97.37 E-value=0.00016 Score=67.99 Aligned_cols=68 Identities=26% Similarity=0.433 Sum_probs=59.2
Q ss_pred CCceecCCC-ceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC-----CceecCCCccCCcccC
Q psy17376 31 RPIFQCNQT-QCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-----NSCIDHLKRCDRTQDC 104 (227)
Q Consensus 31 ~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~-----~~Ci~~~~~CDG~~DC 104 (227)
...|.|.+| .=|++..+=|..-||.||||| + ....|+.++|.|. ..-|+.+.+-||+.||
T Consensus 42 s~~~~CLdgs~~i~f~qlNDd~CDC~DGsDE-P-------------GtsACpngkF~C~N~G~~p~~i~ssrV~DGICDC 107 (480)
T KOG2397|consen 42 SSMFKCLDGSKTISFSQLNDDSCDCLDGSDE-P-------------GTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDC 107 (480)
T ss_pred ccceeeccCCcccCHHHhccccccCCCCCCC-C-------------ccccCCCCceeeeecCCCceeeechhccCccccc
Confidence 458999997 689999999999999999999 1 2346999999996 4689999999999999
Q ss_pred CCCCcccC
Q psy17376 105 ELGEDEID 112 (227)
Q Consensus 105 ~dgsDE~~ 112 (227)
-|||||..
T Consensus 108 CDgSDE~~ 115 (480)
T KOG2397|consen 108 CDGSDEYL 115 (480)
T ss_pred ccCCCCcc
Confidence 99999964
No 12
>KOG2397|consensus
Probab=97.22 E-value=0.00028 Score=66.38 Aligned_cols=67 Identities=34% Similarity=0.557 Sum_probs=57.9
Q ss_pred CceecC--CceecCCCccCCcccCCCCCcccCCCCCCcCCCceecCCC----ceecCCcccCCCCCCCCCCCCCC
Q psy17376 83 NEFRCS--NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSND----FCIPLDKVCNFIDDCGDNSDEME 151 (227)
Q Consensus 83 ~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~~ 151 (227)
..|+|. ..-|+..++-|++-||.||+||..- ..|+.+.|+|.+. .=|+.+.|-||+-||.|||||..
T Consensus 43 ~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGt--sACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~ 115 (480)
T KOG2397|consen 43 SMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGT--SACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYL 115 (480)
T ss_pred cceeeccCCcccCHHHhccccccCCCCCCCCcc--ccCCCCceeeeecCCCceeeechhccCcccccccCCCCcc
Confidence 478998 6789999999999999999999653 3788899999552 37899999999999999999974
No 13
>KOG3509|consensus
Probab=95.80 E-value=0.0084 Score=61.18 Aligned_cols=103 Identities=27% Similarity=0.625 Sum_probs=86.9
Q ss_pred ceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC-CceecCCCccCCcccCCCCCcccCCCC---
Q psy17376 40 QCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDEIDCKT--- 115 (227)
Q Consensus 40 ~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE~~C~~--- 115 (227)
+|......|++.+|+.+.+|+ .+.. .....+.+.+|+|. +++....+.||....+..++++.+|..
T Consensus 2 ~c~~~~~~~~~~~~~~~~~~~--~~~~--------~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (964)
T KOG3509|consen 2 ECVKNRYACDRQPDCRDRSDV--ANDP--------AIGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTPSGCNAKPS 71 (964)
T ss_pred chhhhhhhhccchhhHhhccc--CCCc--------cccccCCcchhccCCccccCchhhhccccccCCCCCcCCcccccc
Confidence 567778899999999999999 6664 22456788899998 999999999999999999998888863
Q ss_pred -CCcCCCceecCCC-ceecCCcccCCCCCCCCCCCCCCC
Q psy17376 116 -YMCPVSHYKCSND-FCIPLDKVCNFIDDCGDNSDEMEC 152 (227)
Q Consensus 116 -~~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C 152 (227)
..|.+..+.|.+- ++.+.+..|+|..+|.++++|..+
T Consensus 72 ~s~~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 110 (964)
T KOG3509|consen 72 ASDCKPTETQCRDRLRCNPQSFQCDGTNDCKDGSDEVGC 110 (964)
T ss_pred ccccCCcccccccchhcCCccccccCCCCCCccchhccc
Confidence 3566778889776 688899999999999999999865
No 14
>KOG3509|consensus
Probab=93.05 E-value=0.09 Score=53.93 Aligned_cols=104 Identities=25% Similarity=0.530 Sum_probs=83.8
Q ss_pred eeccCCceeecCCCCCCCcCCCccCC---CCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCC
Q psy17376 3 LLRKHEVYHKVLDVPRTQARQKVSCN---SSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLG 79 (227)
Q Consensus 3 cl~~~~~cdg~~dc~~~~d~~~~~C~---~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~ 79 (227)
|..+..+|++..++.+.++..+..+. ..+++|.|.++++.-..+.||...++..++++ .+|. .-.....
T Consensus 3 c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~------~~~~~s~ 74 (964)
T KOG3509|consen 3 CVKNRYACDRQPDCRDRSDVANDPAIGSACSPNEFKCNNPRCVQPEALLDADSTCGPNSTP--SGCN------AKPSASD 74 (964)
T ss_pred hhhhhhhhccchhhHhhcccCCCccccccCCcchhccCCccccCchhhhccccccCCCCCc--CCcc------ccccccc
Confidence 44556688899999888887666654 24788999999999999999999999999977 7775 1122345
Q ss_pred CCCCceecC--CceecCCCccCCcccCCCCCcccCCC
Q psy17376 80 CLPNEFRCS--NSCIDHLKRCDRTQDCELGEDEIDCK 114 (227)
Q Consensus 80 C~~~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE~~C~ 114 (227)
|.+..+.|. .++.+.+..|+|..+|.++++|..+.
T Consensus 75 ~~~~~~~c~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 111 (964)
T KOG3509|consen 75 CKPTETQCRDRLRCNPQSFQCDGTNDCKDGSDEVGCK 111 (964)
T ss_pred cCCcccccccchhcCCccccccCCCCCCccchhcccc
Confidence 777888998 58999999999999999999997653
No 15
>PF04885 Stig1: Stigma-specific protein, Stig1; InterPro: IPR006969 This family represents the Stig1 cysteine rich plant protein.The tobacco stigma-specific gene, STIG1 is developmentally regulated and expressed specifically in the stigmatic secretory zone. Pistils of transgenic STIG1-barnase tobacco plants undergo normal development, but lack the stigmatic secretory zone and are female sterile. Pollen grains are unable to penetrate the surface of the ablated pistils. Application of stigmatic exudate from wild-type pistils to the ablated surface increases the efficiency of pollen tube germination and growth and restores the capacity of pollen tubes to penetrate the style []. The function of STIG1 is unknown.
Probab=39.43 E-value=74 Score=25.42 Aligned_cols=40 Identities=25% Similarity=0.571 Sum_probs=23.3
Q ss_pred CCCC-CCCCCCCCCCCCcccCCCCCCCCCCCCceecCCceecCCCccCCcccCCCCCcccCCC
Q psy17376 53 ECGN-GRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCIDHLKRCDRTQDCELGEDEIDCK 114 (227)
Q Consensus 53 DC~D-gSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~~~Ci~~~~~CDG~~DC~dgsDE~~C~ 114 (227)
.|.| ++|. .+|.. -...|..++.-|.|+|+... +|..+|+
T Consensus 76 ~Cvdv~~d~--~nCG~--------Cg~~C~~g~~cC~G~Cvd~~------------~d~~~CG 116 (136)
T PF04885_consen 76 KCVDVSSDR--NNCGA--------CGNKCPYGQTCCGGQCVDLN------------SDPRHCG 116 (136)
T ss_pred cCCccCCCc--cccHh--------hcCCCCCCceecCCEeECCC------------CCccccC
Confidence 5666 4466 66651 12346666655557777764 6677766
Done!