Query psy17376
Match_columns 227
No_of_seqs 229 out of 1347
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 20:53:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17376.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/17376hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n7d_A LDL receptor, low-densi 100.0 8.8E-35 3E-39 283.2 13.1 193 2-225 17-229 (699)
2 1n7d_A LDL receptor, low-densi 100.0 7.1E-34 2.4E-38 276.8 17.2 192 2-226 60-271 (699)
3 3m0c_C LDL receptor, low-densi 100.0 3.9E-34 1.3E-38 282.4 0.0 193 2-225 35-247 (791)
4 3m0c_C LDL receptor, low-densi 100.0 7.6E-32 2.6E-36 266.1 2.2 192 2-226 78-289 (791)
5 2fyj_A Low-density lipoprotein 99.9 3E-22 1E-26 145.8 8.7 76 78-153 3-81 (82)
6 2fyj_A Low-density lipoprotein 99.8 4.2E-21 1.4E-25 139.7 8.9 77 25-114 3-81 (82)
7 2fcw_B LDL receptor, low-densi 99.8 3.8E-22 1.3E-26 144.7 2.7 75 79-153 2-79 (80)
8 2fcw_B LDL receptor, low-densi 99.8 1.8E-21 6E-26 141.1 3.7 72 31-114 5-79 (80)
9 2xrc_A Human complement factor 99.5 2.4E-15 8.1E-20 143.4 5.3 104 31-154 173-277 (565)
10 2xrc_A Human complement factor 99.4 2E-13 6.8E-18 130.1 6.5 89 7-114 187-276 (565)
11 2gtl_O Extracellular hemoglobi 99.4 3.4E-15 1.1E-19 126.1 -6.8 124 14-164 41-185 (215)
12 2gtl_O Extracellular hemoglobi 99.2 1.9E-12 6.6E-17 109.2 -1.1 60 101-162 40-103 (215)
13 1ajj_A LR5, low-density lipopr 99.1 2.1E-11 7.1E-16 75.3 3.5 35 118-152 2-36 (37)
14 2kny_A LRP-1, linker, APO-E; l 99.1 9.5E-12 3.3E-16 89.7 1.3 62 77-138 6-75 (80)
15 2kny_A LRP-1, linker, APO-E; l 99.1 2.8E-11 9.6E-16 87.3 3.2 65 24-99 6-75 (80)
16 1ajj_A LR5, low-density lipopr 99.1 4.4E-11 1.5E-15 73.9 3.1 34 31-66 4-37 (37)
17 1cr8_A Protein (LOW density li 99.1 1.1E-10 3.8E-15 74.0 4.6 37 117-153 3-40 (42)
18 2jm4_A Relaxin receptor 1; LDL 99.1 8.9E-11 3E-15 74.8 3.8 36 117-152 6-42 (43)
19 3a7q_B Low-density lipoprotein 99.1 7.5E-11 2.6E-15 75.5 3.5 37 117-153 7-43 (44)
20 2jm4_A Relaxin receptor 1; LDL 99.1 1.3E-10 4.6E-15 74.0 4.3 39 24-66 4-43 (43)
21 3dpr_E LDL-receptor class A 3; 99.1 1.1E-10 3.9E-15 72.8 3.7 36 118-153 1-38 (39)
22 3a7q_B Low-density lipoprotein 99.0 1.2E-10 4E-15 74.6 3.6 38 25-66 6-43 (44)
23 1d2l_A Lipoprotein receptor re 99.0 1.7E-10 5.8E-15 74.3 4.1 37 25-65 4-40 (45)
24 1cr8_A Protein (LOW density li 99.0 2E-10 6.9E-15 72.8 4.2 37 26-66 3-40 (42)
25 1d2l_A Lipoprotein receptor re 99.0 1.5E-10 5E-15 74.6 3.1 36 117-152 5-40 (45)
26 3dpr_E LDL-receptor class A 3; 99.0 1.9E-10 6.4E-15 71.8 3.5 35 30-66 2-38 (39)
27 2m0p_A Low-density lipoprotein 99.0 1E-10 3.5E-15 77.5 2.1 37 117-153 6-42 (52)
28 2i1p_A Low-density lipoprotein 99.0 1.1E-10 3.7E-15 76.2 2.0 37 117-153 6-43 (48)
29 2m0p_A Low-density lipoprotein 99.0 1.2E-10 4.2E-15 77.1 2.0 39 24-66 4-42 (52)
30 1k7b_A Subgroup A ROUS sarcoma 99.0 1.5E-10 5.3E-15 75.1 2.4 36 117-152 6-46 (47)
31 1k7b_A Subgroup A ROUS sarcoma 99.0 1.7E-10 5.8E-15 74.9 2.5 38 24-65 4-46 (47)
32 2knx_A Prolow-density lipoprot 98.9 6.7E-10 2.3E-14 73.0 4.1 37 78-114 5-43 (50)
33 1jrf_A TVA LDL-A module, subgr 98.9 1.3E-10 4.6E-15 75.3 0.7 38 116-153 3-45 (47)
34 2knx_A Prolow-density lipoprot 98.9 5.5E-10 1.9E-14 73.5 3.4 39 24-66 4-43 (50)
35 1j8e_A Low-density lipoprotein 98.9 2.7E-10 9.3E-15 72.9 1.9 36 117-152 4-39 (44)
36 1j8e_A Low-density lipoprotein 98.9 4.1E-10 1.4E-14 72.1 1.6 33 26-60 4-36 (44)
37 2i1p_A Low-density lipoprotein 98.9 4.1E-10 1.4E-14 73.4 1.1 37 26-66 6-43 (48)
38 1jrf_A TVA LDL-A module, subgr 98.8 4.8E-10 1.7E-14 72.7 0.5 37 26-66 4-45 (47)
39 2gtl_N Extracellular hemoglobi 98.6 1.7E-08 5.9E-13 84.9 4.3 59 24-94 50-114 (220)
40 2gtl_N Extracellular hemoglobi 98.6 2E-08 6.9E-13 84.4 3.6 55 79-133 52-114 (220)
41 2gtl_M Hemoglobin linker chain 98.4 1.1E-07 3.6E-12 80.3 3.7 41 24-66 51-93 (217)
42 2gtl_M Hemoglobin linker chain 98.3 2.5E-07 8.6E-12 78.0 3.4 38 78-115 52-94 (217)
43 3ojy_B Complement component C8 98.1 2.4E-06 8.2E-11 81.0 5.0 53 102-154 44-103 (537)
44 3ojy_A Complement component C8 98.0 4.2E-06 1.5E-10 79.6 4.6 72 80-154 23-102 (554)
45 3ojy_B Complement component C8 97.9 7.8E-06 2.7E-10 77.5 4.9 80 40-132 33-115 (537)
46 3ojy_A Complement component C8 97.7 2.3E-05 7.7E-10 74.6 4.7 33 32-66 68-101 (554)
47 3t5o_A Complement component C6 97.3 0.00015 5.3E-09 72.5 4.6 35 121-155 121-155 (913)
48 3t5o_A Complement component C6 96.7 0.00053 1.8E-08 68.6 2.4 33 32-66 121-153 (913)
No 1
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=100.00 E-value=8.8e-35 Score=283.19 Aligned_cols=193 Identities=24% Similarity=0.426 Sum_probs=134.1
Q ss_pred eeeccCCceeecCCCCCCCcCCCccCC---CCCCceecCC--CceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCC
Q psy17376 2 LLLRKHEVYHKVLDVPRTQARQKVSCN---SSRPIFQCNQ--TQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPN 76 (227)
Q Consensus 2 ~cl~~~~~cdg~~dc~~~~d~~~~~C~---~~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~ 76 (227)
.||+...+|||+.||.+++||....|. +...+|+|.+ ++|||..|+|||..||.||||| .+|.
T Consensus 17 ~ci~~~~~Cdg~~dC~d~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~Cdg~~dC~dgsDE--~~C~---------- 84 (699)
T 1n7d_A 17 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE--QGCP---------- 84 (699)
T ss_dssp ---------------------------CCSCSSSSCCCCC--CCCCCSSSTTSSSCCC-CCCTT--TSCS----------
T ss_pred cEEcHHhcCCCcccCCCCCCCCccccCCcCCCCCccCCCCCCCceeCcceecCCcccCCCCccc--Cccc----------
Confidence 489999999999999999999875552 3479999997 4899999999999999999999 8997
Q ss_pred CCCCCCCceecC-CceecCCCccCCcccCCCCCcccCCCCCCcCCCceecCCCceecCCcccCCCCCCCCCCCC--CCCC
Q psy17376 77 PLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDE--MECS 153 (227)
Q Consensus 77 ~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE--~~C~ 153 (227)
...|.+.+|+|. ++||+..|+|||+.||.|||||.+|....|++.+|+|.+|+||+..|+|||+.||.||||| .+|.
T Consensus 85 ~~~C~~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~ 164 (699)
T 1n7d_A 85 PKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR 164 (699)
T ss_dssp SCCCCSSCCCSSCC----CCCTTCSSCCSSSSCSSSSCCCCCCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSSSSCSSSS
T ss_pred ccccccCcEEcCCCCEecHHHcCCCcCcCCCCCccCCcCccccCccccCCCCCcccchhcccCCCCcCCCCcccccccCC
Confidence 457999999999 9999999999999999999999999888899999999999999999999999999999999 8995
Q ss_pred C--------CCc--CceecCCC--CCCCeeeccccCCcchhhccCCCCCCccccCCCccccCCCCCCCCCCCCccCCCCC
Q psy17376 154 L--------FTF--LSFRLNKK--IPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSRNFTKHPRALFPLPHK 221 (227)
Q Consensus 154 ~--------~~C--~~f~C~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~w~c~~~~De~~~~~~~~~cp~~~f~cp~~ 221 (227)
. ..| .+|+|.++ |+..|+|++ ...|.+++||.+-. ...|+.+.|.|.+|
T Consensus 165 ~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg-----------------~~dC~dgsDE~~C~--~~~C~~~~f~C~~g 225 (699)
T 1n7d_A 165 GLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDG-----------------GPDCKDKSDEENCA--VATCRPDEFQCSDG 225 (699)
T ss_dssp CCCCCSSCCCCSCSSSCCCSSSCCCSTTCTTSS-----------------SCCSTTSCSSCSCC--CCCCCSSEEESSSS
T ss_pred CcccccCCCCCCCCcceecCCCceEechhccCC-----------------CCCCCCCcccccCC--CcccCCCcEecCCC
Confidence 3 368 78999875 444444433 22356777777621 24677777777777
Q ss_pred CCCC
Q psy17376 222 SPVP 225 (227)
Q Consensus 222 ~~~~ 225 (227)
.+||
T Consensus 226 ~Ci~ 229 (699)
T 1n7d_A 226 NCIH 229 (699)
T ss_dssp CEEE
T ss_pred ceee
Confidence 7766
No 2
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Probab=100.00 E-value=7.1e-34 Score=276.82 Aligned_cols=192 Identities=26% Similarity=0.466 Sum_probs=159.9
Q ss_pred eeeccCCceeecCCCCCCCcCCCcc---CCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCC
Q psy17376 2 LLLRKHEVYHKVLDVPRTQARQKVS---CNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPL 78 (227)
Q Consensus 2 ~cl~~~~~cdg~~dc~~~~d~~~~~---C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~ 78 (227)
.||+...+|||..||.+++||.... |. ..+|+|.+|+||+..|+|||..||.||||| .+|. ..
T Consensus 60 ~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~--~~~f~C~~g~Ci~~~~~Cdg~~dC~dgsDE--~~C~----------~~ 125 (699)
T 1n7d_A 60 RCIPQFWRCDGQVDCDNGSDEQGCPPKTCS--QDEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCP----------VL 125 (699)
T ss_dssp CCCCSSSTTSSSCCC-CCCTTTSCSSCCCC--SSCCCSSCC----CCCTTCSSCCSSSSCSS--SSCC----------CC
T ss_pred ceeCcceecCCcccCCCCcccCcccccccc--cCcEEcCCCCEecHHHcCCCcCcCCCCCcc--CCcC----------cc
Confidence 4899999999999999999997543 54 799999999999999999999999999999 8997 55
Q ss_pred CCCCCceecC-CceecCCCccCCcccCCCCCcc--cCCCC--------CCcCCCceecCCCceecCCcccCCCCCCCCCC
Q psy17376 79 GCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDE--IDCKT--------YMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNS 147 (227)
Q Consensus 79 ~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE--~~C~~--------~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~Dgs 147 (227)
.|.+.+|+|. ++||+..|+|||+.||.||||| .+|.. ..|...+|+|.+|+||+.+++|||+.||.|||
T Consensus 126 ~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgs 205 (699)
T 1n7d_A 126 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKS 205 (699)
T ss_dssp CCCSSCCCCSSSCCCCTTSTTCSSCCSSSSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSSCCCSTTCTTSSSCCSTTSC
T ss_pred ccCccccCCCCCcccchhcccCCCCcCCCCcccccccCCCcccccCCCCCCCCcceecCCCceEechhccCCCCCCCCCc
Confidence 7999999999 9999999999999999999999 89963 37999999999999999999999999999999
Q ss_pred CCCCCCCCCc--CceecCCC--CCCCeeeccccCCcchhhccCCCCCCccccCCCccccC-CCCCCCCC-CCCccCCCCC
Q psy17376 148 DEMECSLFTF--LSFRLNKK--IPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALK-PSRNFTKH-PRALFPLPHK 221 (227)
Q Consensus 148 DE~~C~~~~C--~~f~C~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~w~c~~~~De~~-~~~~~~~c-p~~~f~cp~~ 221 (227)
||.+|....| .+|+|.++ |+..++| ++...|.+++||.+ .. ...| +...|.|.+|
T Consensus 206 DE~~C~~~~C~~~~f~C~~g~Ci~~~~~C-----------------dg~~dC~dgsde~~C~~--~~~C~~~~~~~C~~g 266 (699)
T 1n7d_A 206 DEENCAVATCRPDEFQCSDGNCIHGSRQC-----------------DREYDCKDMSDEVGCVN--VTLCEGPNKFKCHSG 266 (699)
T ss_dssp SSCSCCCCCCCSSEEESSSSCEEETTCCS-----------------SSCCCSSSSCSSSSTTC--CCCCCSTTCCCCTTS
T ss_pred ccccCCCcccCCCcEecCCCceeeeeccc-----------------CCCCCCCCCCccCCCCC--CCcccCCCceecCCC
Confidence 9999987789 89999875 2222211 12334788999987 42 4567 4678999999
Q ss_pred CCCCC
Q psy17376 222 SPVPC 226 (227)
Q Consensus 222 ~~~~~ 226 (227)
.+||.
T Consensus 267 ~Ci~~ 271 (699)
T 1n7d_A 267 ECITL 271 (699)
T ss_dssp CCCCS
T ss_pred cEeCC
Confidence 99874
No 3
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.97 E-value=3.9e-34 Score=282.43 Aligned_cols=193 Identities=24% Similarity=0.430 Sum_probs=0.0
Q ss_pred eeeccCCceeecCCCCCCCcCCCccCC---CCCCceecCC--CceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCC
Q psy17376 2 LLLRKHEVYHKVLDVPRTQARQKVSCN---SSRPIFQCNQ--TQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPN 76 (227)
Q Consensus 2 ~cl~~~~~cdg~~dc~~~~d~~~~~C~---~~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~ 76 (227)
.||+...+|||..||.+++||.+..|. +.+.+|+|.+ ++|||..|+|||..||.||||| .+|.
T Consensus 35 ~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~~~Ci~~~~~CDg~~dC~dgsDE--~~C~---------- 102 (791)
T 3m0c_C 35 KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDE--QGCP---------- 102 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEEehhhcCCCCccCCCCCcccccccccCccCcCccccCCCCCCEeeccccCCCCcCcCCCccc--CCcc----------
Confidence 489999999999999999999875442 3479999998 8999999999999999999999 8997
Q ss_pred CCCCCCCceecC-CceecCCCccCCcccCCCCCcccCCCCCCcCCCceecCCCceecCCcccCCCCCCCCCCCCC--CCC
Q psy17376 77 PLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM--ECS 153 (227)
Q Consensus 77 ~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~--~C~ 153 (227)
...|.+.+|+|. ++||+..|+|||+.||.|||||.+|....|.+.+|+|.+|+||+..|+|||..||.|||||. +|.
T Consensus 103 ~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~ 182 (791)
T 3m0c_C 103 PKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR 182 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccCCeEECCCCCEECHHHcCCCcccCCCCcccccccccccccceeccCCCccccccccCCCCCcCCCCCCcccccCC
Confidence 456999999999 99999999999999999999999998878999999999999999999999999999999997 673
Q ss_pred --------CCCc--CceecCCC--CCCCeeeccccCCcchhhccCCCCCCccccCCCccccCCCCCCCCCCCCccCCCCC
Q psy17376 154 --------LFTF--LSFRLNKK--IPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALKPSRNFTKHPRALFPLPHK 221 (227)
Q Consensus 154 --------~~~C--~~f~C~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~w~c~~~~De~~~~~~~~~cp~~~f~cp~~ 221 (227)
...| .+|+|.++ |+..|+|++ ...|.+++||.+.. ...|+.+.|.|.+|
T Consensus 183 ~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg-----------------~~dC~dgsDE~~C~--~~~C~~~~f~C~~g 243 (791)
T 3m0c_C 183 GLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDG-----------------GPDCKDKSDEENCA--VATCRPDEFQCSDG 243 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CccccCCCCCCCCCCcccccCCceeccccccCC-----------------CCCCCCCCCCCCcc--ccccCCCcceecCC
Confidence 2357 78889875 555455433 23356777776611 13577778888887
Q ss_pred CCCC
Q psy17376 222 SPVP 225 (227)
Q Consensus 222 ~~~~ 225 (227)
.+|+
T Consensus 244 ~Ci~ 247 (791)
T 3m0c_C 244 NCIH 247 (791)
T ss_dssp ----
T ss_pred ceEe
Confidence 7776
No 4
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}
Probab=99.96 E-value=7.6e-32 Score=266.15 Aligned_cols=192 Identities=26% Similarity=0.475 Sum_probs=11.6
Q ss_pred eeeccCCceeecCCCCCCCcCCCc---cCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCC
Q psy17376 2 LLLRKHEVYHKVLDVPRTQARQKV---SCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPL 78 (227)
Q Consensus 2 ~cl~~~~~cdg~~dc~~~~d~~~~---~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~ 78 (227)
.||+...+|||..||.+++||.+. .|. ..+|+|.+|+||+..|+|||..||.||||| .+|. ..
T Consensus 78 ~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~--~~~f~C~~g~Ci~~~~~CDg~~dC~dgsDE--~~C~----------~~ 143 (791)
T 3m0c_C 78 RCIPQFWRCDGQVDCDNGSDEQGCPPKTCS--QDEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCP----------VL 143 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CEeeccccCCCCcCcCCCcccCCccCcccc--CCeEECCCCCEECHHHcCCCcccCCCCccc--cccc----------cc
Confidence 489999999999999999999754 344 789999999999999999999999999999 8997 45
Q ss_pred CCCCCceecC-CceecCCCccCCcccCCCCCccc--CCC--------CCCcCCCceecCCCceecCCcccCCCCCCCCCC
Q psy17376 79 GCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDEI--DCK--------TYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNS 147 (227)
Q Consensus 79 ~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE~--~C~--------~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~Dgs 147 (227)
.|.+.+|+|. +.||+..|+|||..||.|||||. +|. ...|...+|+|.+|.||+..|+|||..||.|+|
T Consensus 144 ~C~~~~f~C~~~~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g~Ci~~~~~CDg~~dC~dgs 223 (791)
T 3m0c_C 144 TCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPDCKDKS 223 (791)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceeccCCCccccccccCCCCCcCCCCCCcccccCCCccccCCCCCCCCCCcccccCCceeccccccCCCCCCCCCC
Confidence 6999999999 99999999999999999999997 673 246888999999999999999999999999999
Q ss_pred CCCCCCCCCc--CceecCCC--CCCCeeeccccCCcchhhccCCCCCCccccCCCccccC-CCCCCCCC-CCCccCCCCC
Q psy17376 148 DEMECSLFTF--LSFRLNKK--IPRKSISMTSAKMNQQALLTGNENFDLWVAGFCADALK-PSRNFTKH-PRALFPLPHK 221 (227)
Q Consensus 148 DE~~C~~~~C--~~f~C~~~--~~~~~~~~~~~~~~~~~~~~g~~~~~~w~c~~~~De~~-~~~~~~~c-p~~~f~cp~~ 221 (227)
||.+|....| .+|+|.++ |+..++|+ +.-.|.+++||.+ .. +..| ..+.|.|.+|
T Consensus 224 DE~~C~~~~C~~~~f~C~~g~Ci~~~~~Cd-----------------g~~dC~dgsDE~~C~~--~~~C~~~~~~~C~~G 284 (791)
T 3m0c_C 224 DEENCAVATCRPDEFQCSDGNCIHGSRQCD-----------------REYDCKDMSDEVGCVN--VTLCEGPNKFKCHSG 284 (791)
T ss_dssp --------------------------------------------------------------------CCSTTCCCCTTS
T ss_pred CCCCccccccCCCcceecCCceEecceecC-----------------ChhccccccccCcccc--cccccCCCccccCCC
Confidence 9999987788 89999875 22222221 2223678888887 32 2344 3567888888
Q ss_pred CCCCC
Q psy17376 222 SPVPC 226 (227)
Q Consensus 222 ~~~~~ 226 (227)
.+|+.
T Consensus 285 ~Ci~~ 289 (791)
T 3m0c_C 285 ECITL 289 (791)
T ss_dssp CCCCS
T ss_pred ccccc
Confidence 88763
No 5
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.87 E-value=3e-22 Score=145.80 Aligned_cols=76 Identities=39% Similarity=0.826 Sum_probs=71.3
Q ss_pred CCCCCCceecC-CceecCCCccCCcccCCCCCcc-cCCCCCCcCC-CceecCCCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376 78 LGCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDE-IDCKTYMCPV-SHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153 (227)
Q Consensus 78 ~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE-~~C~~~~C~~-~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 153 (227)
..|.+.+|+|. ++||+.+|+|||+.||.||||| .+|....|.+ .+|+|.+|+||+..++|||+.||.|||||.+|.
T Consensus 3 ~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g~CI~~~~~CDG~~DC~DgSDE~~C~ 81 (82)
T 2fyj_A 3 RTCPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWRCDNDNDCGDNSDEAGCS 81 (82)
T ss_dssp SSSCTTEEETTSSCEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTSCEEETTCBSSSSBCCSSSSSCSCCC
T ss_pred CCCCCCceEeCCCCEEeccccCCCcccCCCccccccccccccCCCCCceECCCCCeEcHHHccCCCCcCCCCccccCCC
Confidence 46889999999 9999999999999999999999 8998778964 899999999999999999999999999999985
No 6
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Probab=99.84 E-value=4.2e-21 Score=139.74 Aligned_cols=77 Identities=35% Similarity=0.784 Sum_probs=69.0
Q ss_pred ccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCC-CceecC-CceecCCCccCCcc
Q psy17376 25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLP-NEFRCS-NSCIDHLKRCDRTQ 102 (227)
Q Consensus 25 ~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~-~~f~C~-~~Ci~~~~~CDG~~ 102 (227)
..|. .++|+|.+|+|||..|+|||+.||.|||||. .+|. ...|.+ .+|+|. ++||+..|+|||+.
T Consensus 3 ~~C~--~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~-~~C~----------~~~C~~~~~f~C~~g~CI~~~~~CDG~~ 69 (82)
T 2fyj_A 3 RTCP--PNQFSCASGRCIPISWTCDLDDDCGDRSDES-ASCA----------YPTCFPLTQFTCNNGRCININWRCDNDN 69 (82)
T ss_dssp SSSC--TTEEETTSSCEEETTSSSSCSSSSCSTTTTT-SSCC----------CSSSCSSSEEECTTSCEEETTCBSSSSB
T ss_pred CCCC--CCceEeCCCCEEeccccCCCcccCCCccccc-cccc----------cccCCCCCceECCCCCeEcHHHccCCCC
Confidence 3565 7999999999999999999999999999994 4786 446865 899999 99999999999999
Q ss_pred cCCCCCcccCCC
Q psy17376 103 DCELGEDEIDCK 114 (227)
Q Consensus 103 DC~dgsDE~~C~ 114 (227)
||.|||||.+|.
T Consensus 70 DC~DgSDE~~C~ 81 (82)
T 2fyj_A 70 DCGDNSDEAGCS 81 (82)
T ss_dssp CCSSSSSCSCCC
T ss_pred cCCCCccccCCC
Confidence 999999999885
No 7
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.84 E-value=3.8e-22 Score=144.65 Aligned_cols=75 Identities=37% Similarity=0.825 Sum_probs=69.5
Q ss_pred CCCCCceecC-CceecCCCccCCcccCCCCCcccCCCCCCcCCCceecCCCceecCCcccCCCCCCCCCCCC--CCCC
Q psy17376 79 GCLPNEFRCS-NSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDE--MECS 153 (227)
Q Consensus 79 ~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE--~~C~ 153 (227)
.|.+.+|+|. ++||+..|+|||+.||.|||||.+|....|++.+|+|.+|+||+..++|||+.||.||||| .+|.
T Consensus 2 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsDE~~~~C~ 79 (80)
T 2fcw_B 2 TCSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQRCR 79 (80)
T ss_dssp CCCTTEEECTTSCEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTSCEEEGGGTTSSSCCSTTCGGGCGGGC-
T ss_pred CCCCCccCCCCCCEEeeecccCCcccCCCcccccccccccCCceeeECCCCCEEecccccCCCcCCCCCCCcCcccCC
Confidence 4788999999 9999999999999999999999999766788999999999999999999999999999999 6664
No 8
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Probab=99.83 E-value=1.8e-21 Score=141.13 Aligned_cols=72 Identities=39% Similarity=0.905 Sum_probs=66.4
Q ss_pred CCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC-CceecCCCccCCcccCCCCCc
Q psy17376 31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGED 109 (227)
Q Consensus 31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsD 109 (227)
+++|+|.+|+||+..|+|||+.||.||||| .+|. ...|.+.+|+|. ++||+..|+|||+.||.||||
T Consensus 5 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE--~~C~----------~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~dgsD 72 (80)
T 2fcw_B 5 QAEFRCHDGKCISRQFVCDSDRDCLDGSDE--ASCP----------VLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSD 72 (80)
T ss_dssp TTEEECTTSCEEEGGGTTSSSCCSTTCTTT--TTHH----------HHHCCTTEEECTTSCEEEGGGTTSSSCCSTTCGG
T ss_pred CCccCCCCCCEEeeecccCCcccCCCcccc--cccc----------cccCCceeeECCCCCEEecccccCCCcCCCCCCC
Confidence 799999999999999999999999999999 8885 345889999999 999999999999999999999
Q ss_pred c--cCCC
Q psy17376 110 E--IDCK 114 (227)
Q Consensus 110 E--~~C~ 114 (227)
| .+|.
T Consensus 73 E~~~~C~ 79 (80)
T 2fcw_B 73 EWPQRCR 79 (80)
T ss_dssp GCGGGC-
T ss_pred cCcccCC
Confidence 9 6664
No 9
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.55 E-value=2.4e-15 Score=143.42 Aligned_cols=104 Identities=26% Similarity=0.497 Sum_probs=86.3
Q ss_pred CCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecC-CceecCCCccCCcccCCCCCc
Q psy17376 31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS-NSCIDHLKRCDRTQDCELGED 109 (227)
Q Consensus 31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~-~~Ci~~~~~CDG~~DC~dgsD 109 (227)
...|.|..+.++...+.+|+..+|.+.+++ | +...+|+|. ++||+..++|||+.||.|+||
T Consensus 173 ~sl~~C~~~~~~~~~h~~DagV~C~~~~~~----c--------------~~~~~~~C~~~~ci~~~~~Cdg~~dC~d~sD 234 (565)
T 2xrc_A 173 TSLAECTFTKRRTMGYQDFADVVCYTQKAD----S--------------PMDDFFQCVNGKYISQMKACDGINDCGDQSD 234 (565)
T ss_dssp SCGGGSEEECCCCCSSCCCCEEEBCCC---------------------------CBCTTSCBCCTTSTTSSSCCSSSSSS
T ss_pred CchhhcccCcccccccccCCceeccccccC----C--------------CCcCeeECCCCCccCHHHcCCCcccCCCCcc
Confidence 455788776678888899999999887665 2 234569999 999999999999999999999
Q ss_pred ccCCCCCCcCCCceecCCCceecCCcccCCCCCCCCCCCCCCCCC
Q psy17376 110 EIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSL 154 (227)
Q Consensus 110 E~~C~~~~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~ 154 (227)
|.+|. .|++.+|+|.++.||+..++|||..||.||+||.+|..
T Consensus 235 E~~C~--~c~~~~~~C~~~~C~~~~~~cdG~~dC~~gsDE~~C~~ 277 (565)
T 2xrc_A 235 ELCCK--ACQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGCAG 277 (565)
T ss_dssp SSSBS--SCSSSCEEETTTEEECGGGTTSSSCCSSSCTTSSSCC-
T ss_pred ccccc--ccCCCceecCCCcccCccccCCCcccCCCCccccCcCC
Confidence 99997 49999999999999999999999999999999999864
No 10
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}
Probab=99.40 E-value=2e-13 Score=130.15 Aligned_cols=89 Identities=29% Similarity=0.619 Sum_probs=72.3
Q ss_pred CCceeecCCCCCCCcCCCccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCcee
Q psy17376 7 HEVYHKVLDVPRTQARQKVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFR 86 (227)
Q Consensus 7 ~~~cdg~~dc~~~~d~~~~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~ 86 (227)
...+|+.++|..... .|. ...+|+|.+|.||+..++|||+.||.|+||| .+|. .|.+.+|+
T Consensus 187 ~h~~DagV~C~~~~~----~c~-~~~~~~C~~~~ci~~~~~Cdg~~dC~d~sDE--~~C~------------~c~~~~~~ 247 (565)
T 2xrc_A 187 GYQDFADVVCYTQKA----DSP-MDDFFQCVNGKYISQMKACDGINDCGDQSDE--LCCK------------ACQGKGFH 247 (565)
T ss_dssp SSCCCCEEEBCCC--------------CBCTTSCBCCTTSTTSSSCCSSSSSSS--SSBS------------SCSSSCEE
T ss_pred ccccCCceecccccc----CCC-CcCeeECCCCCccCHHHcCCCcccCCCCccc--cccc------------ccCCCcee
Confidence 345677777775432 232 1466999999999999999999999999999 8896 38889999
Q ss_pred cC-CceecCCCccCCcccCCCCCcccCCC
Q psy17376 87 CS-NSCIDHLKRCDRTQDCELGEDEIDCK 114 (227)
Q Consensus 87 C~-~~Ci~~~~~CDG~~DC~dgsDE~~C~ 114 (227)
|. +.||+..++|||..||.+|+||.+|.
T Consensus 248 C~~~~C~~~~~~cdG~~dC~~gsDE~~C~ 276 (565)
T 2xrc_A 248 CKSGVCIPSQYQCNGEVDCITGEDEVGCA 276 (565)
T ss_dssp ETTTEEECGGGTTSSSCCSSSCTTSSSCC
T ss_pred cCCCcccCccccCCCcccCCCCccccCcC
Confidence 99 99999999999999999999999986
No 11
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.37 E-value=3.4e-15 Score=126.12 Aligned_cols=124 Identities=15% Similarity=0.178 Sum_probs=96.3
Q ss_pred CCCCCCCcCCCcc-CCCCCCceec--CCCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCceecCCc
Q psy17376 14 LDVPRTQARQKVS-CNSSRPIFQC--NQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS 90 (227)
Q Consensus 14 ~dc~~~~d~~~~~-C~~~~~~F~C--~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~~~ 90 (227)
.+|.+++||.+.. |. ..+|+| .+|+|||..|+|||..||.||||| .+|. ..+|.+.+|+|.
T Consensus 41 ~~c~d~sDE~~C~~C~--~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE--~~C~----------~~~C~~~~F~c~-- 104 (215)
T 2gtl_O 41 GSLRHRVEELEDPSCD--EHEHQCGGDDPQCISKLFVCDGHNDCRNGEDE--KDCT----------LPTKAGDKFIGD-- 104 (215)
T ss_dssp HHHHHHHHHHSCCSSC--TTEEECCSSSCCEEEGGGTTSSSCCSSSCHHH--HCCC----------CSSCTTCEEEEE--
T ss_pred ccCCcchhhccCCCCC--CcceeeCCCCCcCccccccCCCCCcCCCcccc--cCCC----------CCCcCCCceeee--
Confidence 3566777776653 54 799999 689999999999999999999999 8997 457999999882
Q ss_pred eecCCCccCCcccCCCCCcccCCCCCCcC--CCceecCCC---ceec-----------CCcccCCCCCCCCCCCCCCCCC
Q psy17376 91 CIDHLKRCDRTQDCELGEDEIDCKTYMCP--VSHYKCSND---FCIP-----------LDKVCNFIDDCGDNSDEMECSL 154 (227)
Q Consensus 91 Ci~~~~~CDG~~DC~dgsDE~~C~~~~C~--~~~f~C~~g---~Ci~-----------~~~~CDg~~DC~DgsDE~~C~~ 154 (227)
+ + ...|.+.+++..|.. .|. ..+|+|..+ .||. .++.|||+.+ ++++|..|..
T Consensus 105 --~-----~-~~~C~~~~~~~~c~~-~~s~~~~~~fc~~~~v~~~i~l~~~~~g~~~~~s~~cDG~yd--~gs~el~~~p 173 (215)
T 2gtl_O 105 --V-----C-FDHCTKRRPEHMTLA-FESSSIAAFFTPIADLHVHIEIESETDEDESEVSMPADGEYS--FADHRLTIHP 173 (215)
T ss_dssp --E-----E-EESSCSSCCSEEEEE-EEEEEECTTCTTEEEEEEEEEEECCCSSCCCEEEEEEEEEEE--TTTTEEEECC
T ss_pred --E-----C-CCcccCCCCCCceee-eeccccccccCCCCccCeEEEEEeecCCCccccceeecCEec--CCcceeeecC
Confidence 2 1 234777888877642 333 356888776 3777 7889999999 6999999987
Q ss_pred CCc--CceecCC
Q psy17376 155 FTF--LSFRLNK 164 (227)
Q Consensus 155 ~~C--~~f~C~~ 164 (227)
+.+ .+|+|..
T Consensus 174 p~~~~l~f~C~~ 185 (215)
T 2gtl_O 174 PEEDGLGLVGEF 185 (215)
T ss_dssp SSTTTEEEEEEE
T ss_pred CCCCCceeEEEe
Confidence 777 6788854
No 12
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=99.16 E-value=1.9e-12 Score=109.22 Aligned_cols=60 Identities=25% Similarity=0.417 Sum_probs=42.6
Q ss_pred cccCCCCCcccCCCCCCcCCCceec--CCCceecCCcccCCCCCCCCCCCCCCCCCCCc--Cceec
Q psy17376 101 TQDCELGEDEIDCKTYMCPVSHYKC--SNDFCIPLDKVCNFIDDCGDNSDEMECSLFTF--LSFRL 162 (227)
Q Consensus 101 ~~DC~dgsDE~~C~~~~C~~~~f~C--~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~~~C--~~f~C 162 (227)
..+|.+++||.+|. .|++.+|+| .+|+|||.+|+|||..||.|||||.+|...+| .+|+|
T Consensus 40 ~~~c~d~sDE~~C~--~C~~~~F~C~~~~g~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c 103 (215)
T 2gtl_O 40 AGSLRHRVEELEDP--SCDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIG 103 (215)
T ss_dssp HHHHHHHHHHHSCC--SSCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEE
T ss_pred cccCCcchhhccCC--CCCCcceeeCCCCCcCccccccCCCCCcCCCcccccCCCCCCcCCCceee
Confidence 45677777777774 577777777 56777777777777777777777777766666 66766
No 13
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.15 E-value=2.1e-11 Score=75.33 Aligned_cols=35 Identities=34% Similarity=0.704 Sum_probs=26.6
Q ss_pred cCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152 (227)
Q Consensus 118 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 152 (227)
|...+|+|.+|+||+.+++|||+.||.|||||.+|
T Consensus 2 C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 36 (37)
T 1ajj_A 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36 (37)
T ss_dssp CCTTCEECTTSCEECGGGTTSSSCCSTTCGGGTTC
T ss_pred CCCCceEcCCCCeechhhccCCCCCCCCCccccCC
Confidence 55667777777777777777777777777777766
No 14
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.12 E-value=9.5e-12 Score=89.75 Aligned_cols=62 Identities=23% Similarity=0.379 Sum_probs=52.4
Q ss_pred CCCCCCCceecC--CceecCCCccCCcccCCCCCccc---CCC-CCCcCCCceecCC--CceecCCcccC
Q psy17376 77 PLGCLPNEFRCS--NSCIDHLKRCDRTQDCELGEDEI---DCK-TYMCPVSHYKCSN--DFCIPLDKVCN 138 (227)
Q Consensus 77 ~~~C~~~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE~---~C~-~~~C~~~~f~C~~--g~Ci~~~~~CD 138 (227)
...|.+.+|+|. ++|||.+|+|||+.||.|||||. .|. ..+|.+.+|+|.+ ++||+..+...
T Consensus 6 ~~~C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~~ci~~~~~gL 75 (80)
T 2kny_A 6 GKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELRVRLASHLRKL 75 (80)
T ss_dssp SCCCSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHHHHTTTTTTTT
T ss_pred CCCCCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHHHHHHHHHHHH
Confidence 456889999997 79999999999999999999998 476 3579899999988 67988776544
No 15
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}
Probab=99.11 E-value=2.8e-11 Score=87.26 Aligned_cols=65 Identities=25% Similarity=0.407 Sum_probs=51.9
Q ss_pred CccCCCCCCceecC-CCceEeCCCccCCCCCCCCCCCCCC-CCCCCCcccCCCCCCCCCCCCceecC---CceecCCCcc
Q psy17376 24 KVSCNSSRPIFQCN-QTQCILETSLCNGIPECGNGRDESV-AMCGEYNIRDLLPNPLGCLPNEFRCS---NSCIDHLKRC 98 (227)
Q Consensus 24 ~~~C~~~~~~F~C~-~g~CI~~~~~CDg~~DC~DgSDE~~-~~C~~~~~~~~~~~~~~C~~~~f~C~---~~Ci~~~~~C 98 (227)
...|. +++|+|. +|.|||..|+|||+.||.|||||.. .+|. ...+|.+.+|+|. ++||+..+..
T Consensus 6 ~~~C~--~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~---------~~~~C~~~~f~c~~~~~~ci~~~~~g 74 (80)
T 2kny_A 6 GKTCG--PSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCL---------YNSTGSGSGSGSTEELRVRLASHLRK 74 (80)
T ss_dssp SCCCS--SSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCS---------SSSTTTTCSSCHHHHHHHHTTTTTTT
T ss_pred CCCCC--CCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCC---------CCcccCcccchhhhHHHHHHHHHHHH
Confidence 35565 7899998 5899999999999999999999932 1454 2457999999997 6888887654
Q ss_pred C
Q psy17376 99 D 99 (227)
Q Consensus 99 D 99 (227)
.
T Consensus 75 L 75 (80)
T 2kny_A 75 L 75 (80)
T ss_dssp T
T ss_pred H
Confidence 3
No 16
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=99.09 E-value=4.4e-11 Score=73.85 Aligned_cols=34 Identities=32% Similarity=0.742 Sum_probs=32.0
Q ss_pred CCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 31 RPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 31 ~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
..+|+|.+|+||+..|+|||+.||.||||| .+|.
T Consensus 4 ~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE--~~C~ 37 (37)
T 1ajj_A 4 AFEFHCLSGECIHSSWRCDGGPDCKDKSDE--ENCA 37 (37)
T ss_dssp TTCEECTTSCEECGGGTTSSSCCSTTCGGG--TTCC
T ss_pred CCceEcCCCCeechhhccCCCCCCCCCccc--cCCC
Confidence 789999999999999999999999999999 7773
No 17
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.08 E-value=1.1e-10 Score=74.01 Aligned_cols=37 Identities=38% Similarity=0.858 Sum_probs=28.6
Q ss_pred CcCCCceecC-CCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376 117 MCPVSHYKCS-NDFCIPLDKVCNFIDDCGDNSDEMECS 153 (227)
Q Consensus 117 ~C~~~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 153 (227)
.|...+|+|. +|+||+..++|||+.||.|||||.+|.
T Consensus 3 ~C~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 40 (42)
T 1cr8_A 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40 (42)
T ss_dssp CSSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTCC
T ss_pred CCCCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCCC
Confidence 4667778886 477888888888888888888887775
No 18
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.07 E-value=8.9e-11 Score=74.85 Aligned_cols=36 Identities=39% Similarity=0.944 Sum_probs=28.7
Q ss_pred CcCCCceecCC-CceecCCcccCCCCCCCCCCCCCCC
Q psy17376 117 MCPVSHYKCSN-DFCIPLDKVCNFIDDCGDNSDEMEC 152 (227)
Q Consensus 117 ~C~~~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C 152 (227)
.|+..+|+|.+ |+||+..++|||+.||.|||||.+|
T Consensus 6 ~C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C 42 (43)
T 2jm4_A 6 KCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42 (43)
T ss_dssp SCCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred CCCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence 56677888877 7788888888888888888888776
No 19
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.07 E-value=7.5e-11 Score=75.55 Aligned_cols=37 Identities=41% Similarity=0.840 Sum_probs=25.9
Q ss_pred CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376 117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153 (227)
Q Consensus 117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 153 (227)
.|...+|+|.+|+||+..++|||+.||.|||||.+|.
T Consensus 7 ~C~~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 7 ECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp -CCTTEEECTTSCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CCCCCceEcCCCCEeChhhccCCCCCCCCCccccCCC
Confidence 4556677777777777777777777777777777664
No 20
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}
Probab=99.06 E-value=1.3e-10 Score=74.01 Aligned_cols=39 Identities=41% Similarity=0.981 Sum_probs=34.5
Q ss_pred CccCCCCCCceecCC-CceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 24 KVSCNSSRPIFQCNQ-TQCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 24 ~~~C~~~~~~F~C~~-g~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
...|. .++|+|.+ |+||+..|+|||+.||.||||| .+|.
T Consensus 4 ~~~C~--~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE--~~C~ 43 (43)
T 2jm4_A 4 DVKCS--LGYFPCGNITKCLPQLLHCNGVDDCGNQADE--DNCG 43 (43)
T ss_dssp SCSCC--TTEEECSSSSCEEEGGGTTSSCCCSSSCCTT--SSCC
T ss_pred CCCCC--CCeeECCCCCeEcCHhhccCCCCCCCCCccc--CCCC
Confidence 34565 78999999 8999999999999999999999 7773
No 21
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=99.05 E-value=1.1e-10 Score=72.83 Aligned_cols=36 Identities=31% Similarity=0.803 Sum_probs=29.6
Q ss_pred cCCCceecCC--CceecCCcccCCCCCCCCCCCCCCCC
Q psy17376 118 CPVSHYKCSN--DFCIPLDKVCNFIDDCGDNSDEMECS 153 (227)
Q Consensus 118 C~~~~f~C~~--g~Ci~~~~~CDg~~DC~DgsDE~~C~ 153 (227)
|++.+|+|.+ |+||+.+|+|||+.||.|||||.+|.
T Consensus 1 C~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C~ 38 (39)
T 3dpr_E 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38 (39)
T ss_dssp CCTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTCC
T ss_pred CCCCceecCCCCCCEeCccccCCCcccCcCCcccccCC
Confidence 4567888876 78888888888888888888888875
No 22
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=99.04 E-value=1.2e-10 Score=74.65 Aligned_cols=38 Identities=29% Similarity=0.669 Sum_probs=33.0
Q ss_pred ccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 25 ~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
..|. ..+|+|.+|+||+..|+|||+.||.||||| .+|.
T Consensus 6 ~~C~--~~~f~C~~g~CI~~~~~CDg~~DC~DgSDE--~~C~ 43 (44)
T 3a7q_B 6 KECE--KDQFQCRNERCIPSVWRCDEDDDCLDHSDE--DDCP 43 (44)
T ss_dssp --CC--TTEEECTTSCEEEGGGTTSSSCCSSSSTTT--SCC-
T ss_pred CCCC--CCceEcCCCCEeChhhccCCCCCCCCCccc--cCCC
Confidence 4565 689999999999999999999999999999 7874
No 23
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.03 E-value=1.7e-10 Score=74.29 Aligned_cols=37 Identities=32% Similarity=0.681 Sum_probs=33.2
Q ss_pred ccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376 25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC 65 (227)
Q Consensus 25 ~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C 65 (227)
..|. ..+|+|.+|+||+..|+|||+.||.||||| ..|
T Consensus 4 ~~C~--~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE--~~c 40 (45)
T 1d2l_A 4 PQCQ--PGEFACANSRCIQERWKCDGDNDCLDNSDE--APA 40 (45)
T ss_dssp CBTT--BTCEEETTTEEECGGGTTTSSCTTTTCSTT--STT
T ss_pred CcCC--CCceEcCCCCeEehhhccCCCCCCCCCCCC--CCC
Confidence 4565 789999999999999999999999999999 555
No 24
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.03 E-value=2e-10 Score=72.81 Aligned_cols=37 Identities=32% Similarity=0.706 Sum_probs=33.3
Q ss_pred cCCCCCCceecCC-CceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 26 SCNSSRPIFQCNQ-TQCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 26 ~C~~~~~~F~C~~-g~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
.|. .++|+|.+ |+||+..|+|||+.||.||||| .+|.
T Consensus 3 ~C~--~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE--~~C~ 40 (42)
T 1cr8_A 3 GCH--TDEFQCRLDGLCIPLRWRCDGDTDCMDSSDE--KSCE 40 (42)
T ss_dssp CSS--TTCEECTTTCCEECGGGSSSSSCCSSSSTTT--TTCC
T ss_pred CCC--CCceEeCCCCeEcChhhcCCCCcCCCCCCcc--cCCC
Confidence 455 79999985 8999999999999999999999 7885
No 25
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1
Probab=99.01 E-value=1.5e-10 Score=74.60 Aligned_cols=36 Identities=36% Similarity=0.664 Sum_probs=25.0
Q ss_pred CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376 117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152 (227)
Q Consensus 117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 152 (227)
.|+..+|+|.+|+||+..|+|||+.||.|||||..|
T Consensus 5 ~C~~~~F~C~~g~CI~~~~~CDG~~DC~DgSDE~~c 40 (45)
T 1d2l_A 5 QCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40 (45)
T ss_dssp BTTBTCEEETTTEEECGGGTTTSSCTTTTCSTTSTT
T ss_pred cCCCCceEcCCCCeEehhhccCCCCCCCCCCCCCCC
Confidence 455666777777777777777777777777777655
No 26
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*
Probab=99.01 E-value=1.9e-10 Score=71.81 Aligned_cols=35 Identities=37% Similarity=0.782 Sum_probs=32.3
Q ss_pred CCCceecCC--CceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 30 SRPIFQCNQ--TQCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 30 ~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
++.+|+|.+ |+|||..|+|||+.||.||||| .+|.
T Consensus 2 ~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE--~~C~ 38 (39)
T 3dpr_E 2 RIHEISCGAHSTQCIPVSWRCDGENDCDSGEDE--ENCG 38 (39)
T ss_dssp CTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTS--TTCC
T ss_pred CCCceecCCCCCCEeCccccCCCcccCcCCccc--ccCC
Confidence 368999997 8999999999999999999999 8885
No 27
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=99.00 E-value=1e-10 Score=77.49 Aligned_cols=37 Identities=43% Similarity=0.947 Sum_probs=22.2
Q ss_pred CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376 117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153 (227)
Q Consensus 117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 153 (227)
.|+..+|+|.+|+||+..|+|||..||.|||||.+|.
T Consensus 6 ~C~~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE~~~~ 42 (52)
T 2m0p_A 6 SCLDTQYTCDNHQCISKNWVCDTDNDCGDGSDEKNCN 42 (52)
T ss_dssp SSCSSEEECTTCCEEETTSTTSSSCSSSSCHHHHSCC
T ss_pred CCCCCceECCCCCEEecCccCCCCCCCCCCCccccch
Confidence 4555566666666666666666666666666665553
No 28
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.99 E-value=1.1e-10 Score=76.20 Aligned_cols=37 Identities=38% Similarity=0.834 Sum_probs=27.6
Q ss_pred CcCCCceecCCC-ceecCCcccCCCCCCCCCCCCCCCC
Q psy17376 117 MCPVSHYKCSND-FCIPLDKVCNFIDDCGDNSDEMECS 153 (227)
Q Consensus 117 ~C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C~ 153 (227)
.|.+.+|+|.+| +||+..++|||+.||.|||||.+|.
T Consensus 6 ~C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (48)
T 2i1p_A 6 NCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43 (48)
T ss_dssp CCCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred CCCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence 566677777777 6777777777777777777777765
No 29
>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}
Probab=98.98 E-value=1.2e-10 Score=77.11 Aligned_cols=39 Identities=33% Similarity=0.842 Sum_probs=35.0
Q ss_pred CccCCCCCCceecCCCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 24 KVSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 24 ~~~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
...|. .++|+|.+|+||+..|+|||..||.||||| .+|.
T Consensus 4 p~~C~--~~~F~C~nG~CIp~~~~CDG~~DC~DgSDE--~~~~ 42 (52)
T 2m0p_A 4 PASCL--DTQYTCDNHQCISKNWVCDTDNDCGDGSDE--KNCN 42 (52)
T ss_dssp CCSSC--SSEEECTTCCEEETTSTTSSSCSSSSCHHH--HSCC
T ss_pred CCCCC--CCceECCCCCEEecCccCCCCCCCCCCCcc--ccch
Confidence 45666 799999999999999999999999999999 7775
No 30
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.98 E-value=1.5e-10 Score=75.07 Aligned_cols=36 Identities=39% Similarity=0.935 Sum_probs=28.3
Q ss_pred CcCCCceecC-----CCceecCCcccCCCCCCCCCCCCCCC
Q psy17376 117 MCPVSHYKCS-----NDFCIPLDKVCNFIDDCGDNSDEMEC 152 (227)
Q Consensus 117 ~C~~~~f~C~-----~g~Ci~~~~~CDg~~DC~DgsDE~~C 152 (227)
.|++.+|+|. +++||+.+|+|||+.||.|||||.+|
T Consensus 6 ~C~~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE~~C 46 (47)
T 1k7b_A 6 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46 (47)
T ss_dssp CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred CCCCCceEcCCCCCCCCcCCCccccCCCcCCCCCCcccCCC
Confidence 4667788886 67788888888888888888888766
No 31
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1
Probab=98.98 E-value=1.7e-10 Score=74.87 Aligned_cols=38 Identities=39% Similarity=0.891 Sum_probs=32.8
Q ss_pred CccCCCCCCceecC-----CCceEeCCCccCCCCCCCCCCCCCCCCC
Q psy17376 24 KVSCNSSRPIFQCN-----QTQCILETSLCNGIPECGNGRDESVAMC 65 (227)
Q Consensus 24 ~~~C~~~~~~F~C~-----~g~CI~~~~~CDg~~DC~DgSDE~~~~C 65 (227)
...|. ..+|+|. +|+|||..|+|||+.||.||||| .+|
T Consensus 4 ~~~C~--~~~F~C~~~~~~~g~CIp~~~~CDG~~DC~DgSDE--~~C 46 (47)
T 1k7b_A 4 FGSCP--PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGC 46 (47)
T ss_dssp --CCS--TTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTT--GGG
T ss_pred CCCCC--CCceEcCCCCCCCCcCCCccccCCCcCCCCCCccc--CCC
Confidence 34565 7999998 78999999999999999999999 776
No 32
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.93 E-value=6.7e-10 Score=73.04 Aligned_cols=37 Identities=32% Similarity=0.687 Sum_probs=26.2
Q ss_pred CCCCCCceecC--CceecCCCccCCcccCCCCCcccCCC
Q psy17376 78 LGCLPNEFRCS--NSCIDHLKRCDRTQDCELGEDEIDCK 114 (227)
Q Consensus 78 ~~C~~~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE~~C~ 114 (227)
..|.+.+|+|. ++||+..|+|||+.||.|||||..|.
T Consensus 5 ~~C~~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE~~C~ 43 (50)
T 2knx_A 5 KTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43 (50)
T ss_dssp CTTCTTEEEETTTTEEEETTTTTSSSCCSTTCGGGSGGG
T ss_pred CCCCCCcEEcCCCCeEcChhhcCCCCCCCCCCCcccccc
Confidence 34666777773 67777777777777777777777653
No 33
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.93 E-value=1.3e-10 Score=75.33 Aligned_cols=38 Identities=37% Similarity=0.870 Sum_probs=31.0
Q ss_pred CCcCCCceecC-----CCceecCCcccCCCCCCCCCCCCCCCC
Q psy17376 116 YMCPVSHYKCS-----NDFCIPLDKVCNFIDDCGDNSDEMECS 153 (227)
Q Consensus 116 ~~C~~~~f~C~-----~g~Ci~~~~~CDg~~DC~DgsDE~~C~ 153 (227)
..|+..+|+|. +++||+..|+|||+.||.|||||.+|.
T Consensus 3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C~ 45 (47)
T 1jrf_A 3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCG 45 (47)
T ss_dssp CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHHH
T ss_pred CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccCC
Confidence 35777888887 678898888999999999999887764
No 34
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}
Probab=98.93 E-value=5.5e-10 Score=73.47 Aligned_cols=39 Identities=31% Similarity=0.790 Sum_probs=33.8
Q ss_pred CccCCCCCCceecC-CCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 24 KVSCNSSRPIFQCN-QTQCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 24 ~~~C~~~~~~F~C~-~g~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
...|. ..+|+|. +|+||+..|+|||+.||.||||| ..|.
T Consensus 4 ~~~C~--~~~F~C~~~g~CI~~~~~CDG~~DC~DgSDE--~~C~ 43 (50)
T 2knx_A 4 GKTCG--PSSFSCPGTHVCVPERWLCDGDKDCADGADE--SIAA 43 (50)
T ss_dssp TCTTC--TTEEEETTTTEEEETTTTTSSSCCSTTCGGG--SGGG
T ss_pred CCCCC--CCcEEcCCCCeEcChhhcCCCCCCCCCCCcc--cccc
Confidence 34565 7999995 89999999999999999999999 6664
No 35
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.92 E-value=2.7e-10 Score=72.91 Aligned_cols=36 Identities=39% Similarity=0.849 Sum_probs=27.9
Q ss_pred CcCCCceecCCCceecCCcccCCCCCCCCCCCCCCC
Q psy17376 117 MCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152 (227)
Q Consensus 117 ~C~~~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C 152 (227)
.|++.+|+|.+|+||+..++|||+.||.|||||.+|
T Consensus 4 ~C~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~ 39 (44)
T 1j8e_A 4 SCSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39 (44)
T ss_dssp SSCTTEEECTTSCEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred CCCCCceEeCCCCeEecCcccCCCCCCCCCCCCCCc
Confidence 566777888888888888888888888888888653
No 36
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Probab=98.88 E-value=4.1e-10 Score=72.05 Aligned_cols=33 Identities=42% Similarity=0.925 Sum_probs=30.9
Q ss_pred cCCCCCCceecCCCceEeCCCccCCCCCCCCCCCC
Q psy17376 26 SCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDE 60 (227)
Q Consensus 26 ~C~~~~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE 60 (227)
.|. +.+|+|.+|+|||..|+|||+.||.|+|||
T Consensus 4 ~C~--~~~F~C~~g~CI~~~~~CDg~~DC~DgSDE 36 (44)
T 1j8e_A 4 SCS--STQFKCNSGRCIPEHWTCDGDNDCGDYSDE 36 (44)
T ss_dssp SSC--TTEEECTTSCEEEGGGTTSSSCCSSSSGGG
T ss_pred CCC--CCceEeCCCCeEecCcccCCCCCCCCCCCC
Confidence 454 789999999999999999999999999999
No 37
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}
Probab=98.86 E-value=4.1e-10 Score=73.41 Aligned_cols=37 Identities=32% Similarity=0.830 Sum_probs=33.9
Q ss_pred cCCCCCCceecCCC-ceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 26 SCNSSRPIFQCNQT-QCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 26 ~C~~~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
.|. ..+|+|.+| +||+..|+|||+.||.||||| .+|.
T Consensus 6 ~C~--~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE--~~C~ 43 (48)
T 2i1p_A 6 NCT--SAQFKCADGSSCINSRYRCDGVYDCRDNSDE--AGCP 43 (48)
T ss_dssp CCC--SSSEECSSSSCEECGGGSSSSSCCSSSSHHH--HSSC
T ss_pred CCC--CCeeECCCCCEeCCHhhcCCCCCCCCCCccc--ccCC
Confidence 455 789999998 899999999999999999999 8886
No 38
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1
Probab=98.83 E-value=4.8e-10 Score=72.66 Aligned_cols=37 Identities=41% Similarity=1.012 Sum_probs=32.8
Q ss_pred cCCCCCCceecC-----CCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 26 SCNSSRPIFQCN-----QTQCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 26 ~C~~~~~~F~C~-----~g~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
.|. ..+|+|. +++|||..|+|||+.||.||||| .+|.
T Consensus 4 ~C~--~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE--~~C~ 45 (47)
T 1jrf_A 4 RCP--PGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGCG 45 (47)
T ss_dssp CCC--CCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTT--HHHH
T ss_pred CCC--CCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccc--ccCC
Confidence 455 7899998 68999999999999999999999 7764
No 39
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.63 E-value=1.7e-08 Score=84.85 Aligned_cols=59 Identities=27% Similarity=0.692 Sum_probs=44.5
Q ss_pred CccCCCCCCceecC--CCceEeCCCccCCCCCCCCCCCCCCCCCCCCcccCCCCCCC-CCCCCce--ecC-CceecC
Q psy17376 24 KVSCNSSRPIFQCN--QTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPL-GCLPNEF--RCS-NSCIDH 94 (227)
Q Consensus 24 ~~~C~~~~~~F~C~--~g~CI~~~~~CDg~~DC~DgSDE~~~~C~~~~~~~~~~~~~-~C~~~~f--~C~-~~Ci~~ 94 (227)
...|. ..+|+|. +|+||+..|+|||.+||.|||||.+.+|. .. +|.+.+| +|. +.|+.+
T Consensus 50 ~~~C~--~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~----------~~~tc~~~qF~g~~~~d~C~kr 114 (220)
T 2gtl_N 50 GTHCE--KRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCD----------TSVVKAGNVFSGTSTWHGCLAR 114 (220)
T ss_dssp CCSSC--TTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGC----------GGGGCTTCEEEEEEEECSSCCC
T ss_pred CCCCC--CCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCC----------CCCccCCcceeeEecCChhhcC
Confidence 45676 6899995 58999999999999999999999555897 33 5655554 454 555444
No 40
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.60 E-value=2e-08 Score=84.44 Aligned_cols=55 Identities=27% Similarity=0.577 Sum_probs=40.1
Q ss_pred CCCCCceecC---CceecCCCccCCcccCCCCCccc--CCCCC-CcCCCce--ecCCCceecC
Q psy17376 79 GCLPNEFRCS---NSCIDHLKRCDRTQDCELGEDEI--DCKTY-MCPVSHY--KCSNDFCIPL 133 (227)
Q Consensus 79 ~C~~~~f~C~---~~Ci~~~~~CDG~~DC~dgsDE~--~C~~~-~C~~~~f--~C~~g~Ci~~ 133 (227)
.|.+.+|+|. ++||+..|+|||..||.|||||. +|... +|.+.+| +|.++.|+.+
T Consensus 52 ~C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~d~C~kr 114 (220)
T 2gtl_N 52 HCEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWHGCLAR 114 (220)
T ss_dssp SSCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEECSSCCC
T ss_pred CCCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecCChhhcC
Confidence 5777888883 68888888888888888888885 78766 6665544 5666666544
No 41
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.43 E-value=1.1e-07 Score=80.33 Aligned_cols=41 Identities=27% Similarity=0.754 Sum_probs=34.3
Q ss_pred CccCCCCCCceecCC--CceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 24 KVSCNSSRPIFQCNQ--TQCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 24 ~~~C~~~~~~F~C~~--g~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
...|. +.+|+|.+ |.||+..|+|||..||.|||||.+.+|.
T Consensus 51 ~~~C~--~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~ 93 (217)
T 2gtl_M 51 EHHCD--EHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCS 93 (217)
T ss_dssp CCCCC--TTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHC
T ss_pred CCCCC--CCceecCCCCCcEechhhccCCCCCCCCCCccccCcCC
Confidence 34565 79999975 9999999999999999999999322786
No 42
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=98.32 E-value=2.5e-07 Score=78.04 Aligned_cols=38 Identities=37% Similarity=0.730 Sum_probs=26.5
Q ss_pred CCCCCCceec--C-CceecCCCccCCcccCCCCCccc--CCCC
Q psy17376 78 LGCLPNEFRC--S-NSCIDHLKRCDRTQDCELGEDEI--DCKT 115 (227)
Q Consensus 78 ~~C~~~~f~C--~-~~Ci~~~~~CDG~~DC~dgsDE~--~C~~ 115 (227)
..|.+.+|+| . |+||+..|+|||..||.|||||. +|..
T Consensus 52 ~~C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~~C~~ 94 (217)
T 2gtl_M 52 HHCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSL 94 (217)
T ss_dssp CCCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHHHHCC
T ss_pred CCCCCCceecCCCCCcEechhhccCCCCCCCCCCccccCcCCC
Confidence 4577777777 3 67777777777777777777776 5643
No 43
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=98.08 E-value=2.4e-06 Score=80.99 Aligned_cols=53 Identities=32% Similarity=0.709 Sum_probs=40.6
Q ss_pred ccCC-CCCcccCCCC-CCcCC----CceecC-CCceecCCcccCCCCCCCCCCCCCCCCC
Q psy17376 102 QDCE-LGEDEIDCKT-YMCPV----SHYKCS-NDFCIPLDKVCNFIDDCGDNSDEMECSL 154 (227)
Q Consensus 102 ~DC~-dgsDE~~C~~-~~C~~----~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~C~~ 154 (227)
..|. ...|+..|.. ..|+. .+|+|. +|+||+..|+|||..||.|+|||.+|..
T Consensus 44 ~~C~~~l~d~~~C~~~~~C~~~~~c~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~c~~ 103 (537)
T 3ojy_B 44 EPCNFSDKEVEDCVTNRPCRSQVRCEGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRR 103 (537)
T ss_dssp CCCCSCSEEEEECCCCCCCCCCSCCSSEECTTTCCEECGGGTTSSSCCSSSSCTTSSCSS
T ss_pred CcCccchhhhccCCCccccccCCCCCccCcCCCCcEeeccccCCCCCCCCCccccccCCC
Confidence 3444 3356666632 23422 689998 9999999999999999999999999964
No 44
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.98 E-value=4.2e-06 Score=79.59 Aligned_cols=72 Identities=25% Similarity=0.523 Sum_probs=48.4
Q ss_pred CCCCceecCCceecCCCccCCcccCCCC-CcccCCCC-CCcC-----CCceecC-CCceecCCcccCCCCCCCCCCCCCC
Q psy17376 80 CLPNEFRCSNSCIDHLKRCDRTQDCELG-EDEIDCKT-YMCP-----VSHYKCS-NDFCIPLDKVCNFIDDCGDNSDEME 151 (227)
Q Consensus 80 C~~~~f~C~~~Ci~~~~~CDG~~DC~dg-sDE~~C~~-~~C~-----~~~f~C~-~g~Ci~~~~~CDg~~DC~DgsDE~~ 151 (227)
|...+++- +.|.......| ..|... .|+..|.. ..|+ ..+|+|. +|+||+..++|||..||.|+|||.+
T Consensus 23 C~~~~~R~--R~v~~p~q~gG-~~C~~~l~d~~~C~~~~~c~~~~~c~~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE~~ 99 (554)
T 3ojy_A 23 CQDKKYRH--RSLLQPNKFGG-TICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRHLVCNGDQDCLDGSDEDD 99 (554)
T ss_dssp TTCEEEEE--CCEEECBCSSC-CCCCSCSEEEEECCCCCCC--CCCCSSSEECSSSCCEECGGGTTSSSCCSSSCTTSSS
T ss_pred CCCccEee--EeeccccccCC-CCCCCccccccCCCCCCCCcccCCCCCcCccCCCCEEcccccccCCcccCCCcccccc
Confidence 44334433 33443333333 446553 56666642 2332 2699998 9999999999999999999999999
Q ss_pred CCC
Q psy17376 152 CSL 154 (227)
Q Consensus 152 C~~ 154 (227)
|..
T Consensus 100 C~~ 102 (554)
T 3ojy_A 100 CED 102 (554)
T ss_dssp CCS
T ss_pred CCC
Confidence 974
No 45
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.90 E-value=7.8e-06 Score=77.48 Aligned_cols=80 Identities=21% Similarity=0.508 Sum_probs=54.0
Q ss_pred ceEeCCCccCCCCCCCC-CCCCCCCCCCCCcccCCCCCCCCCCCCceecC--CceecCCCccCCcccCCCCCcccCCCCC
Q psy17376 40 QCILETSLCNGIPECGN-GRDESVAMCGEYNIRDLLPNPLGCLPNEFRCS--NSCIDHLKRCDRTQDCELGEDEIDCKTY 116 (227)
Q Consensus 40 ~CI~~~~~CDg~~DC~D-gSDE~~~~C~~~~~~~~~~~~~~C~~~~f~C~--~~Ci~~~~~CDG~~DC~dgsDE~~C~~~ 116 (227)
+.|.......| ..|.. ..|+ ..|.... .......| .+|+|. |+||+..|+|||..||.|+|||.+|..
T Consensus 33 R~v~~p~q~gG-~~C~~~l~d~--~~C~~~~---~C~~~~~c--~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sdE~~c~~- 103 (537)
T 3ojy_B 33 AYLLQPSQFHG-EPCNFSDKEV--EDCVTNR---PCRSQVRC--EGFVCAQTGRCVNRRLLCNGDNDCGDQSDEANCRR- 103 (537)
T ss_dssp CCEEECEETTC-CCCCSCSEEE--EECCCCC---CCCCCSCC--SSEECTTTCCEECGGGTTSSSCCSSSSCTTSSCSS-
T ss_pred eeeccccccCC-CcCccchhhh--ccCCCcc---ccccCCCC--CccCcCCCCcEeeccccCCCCCCCCCccccccCCC-
Confidence 34555455444 46664 4666 6675110 01123346 799997 999999999999999999999998862
Q ss_pred CcCCCceecCCCceec
Q psy17376 117 MCPVSHYKCSNDFCIP 132 (227)
Q Consensus 117 ~C~~~~f~C~~g~Ci~ 132 (227)
..+.|..+.+|+
T Consensus 104 ----~~~~C~~~~~~~ 115 (537)
T 3ojy_B 104 ----IYKKCQHEMDQY 115 (537)
T ss_dssp ----CSSCCSSCCBCC
T ss_pred ----CCCccccCcCCC
Confidence 345676666666
No 46
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=97.71 E-value=2.3e-05 Score=74.60 Aligned_cols=33 Identities=36% Similarity=0.832 Sum_probs=31.8
Q ss_pred CceecC-CCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 32 PIFQCN-QTQCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 32 ~~F~C~-~g~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
.+|+|. +|+||+..|+|||..||.|+||| .+|.
T Consensus 68 ~~f~C~~~g~Ci~~~~~Cdg~~dC~d~sDE--~~C~ 101 (554)
T 3ojy_A 68 QDFQCKETGRCLKRHLVCNGDQDCLDGSDE--DDCE 101 (554)
T ss_dssp SSEECSSSCCEECGGGTTSSSCCSSSCTTS--SSCC
T ss_pred CcCccCCCCEEcccccccCCcccCCCcccc--ccCC
Confidence 799999 89999999999999999999999 8897
No 47
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=97.29 E-value=0.00015 Score=72.51 Aligned_cols=35 Identities=40% Similarity=0.848 Sum_probs=32.7
Q ss_pred CceecCCCceecCCcccCCCCCCCCCCCCCCCCCC
Q psy17376 121 SHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLF 155 (227)
Q Consensus 121 ~~f~C~~g~Ci~~~~~CDg~~DC~DgsDE~~C~~~ 155 (227)
..|+|.+|+||+..++|||..||.|+|||.+|...
T Consensus 121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde~~C~~~ 155 (913)
T 3t5o_A 121 NKFRCDSGRCIARKLECNGENDCGDNSDERDCGRT 155 (913)
T ss_dssp SEEECTTSCEEEGGGSSSSSCCSSSSGGGTTCSSC
T ss_pred cccccCCCceEccceecCCcccCCCccccccCCCC
Confidence 57999999999999999999999999999999753
No 48
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=96.71 E-value=0.00053 Score=68.65 Aligned_cols=33 Identities=39% Similarity=0.949 Sum_probs=31.6
Q ss_pred CceecCCCceEeCCCccCCCCCCCCCCCCCCCCCC
Q psy17376 32 PIFQCNQTQCILETSLCNGIPECGNGRDESVAMCG 66 (227)
Q Consensus 32 ~~F~C~~g~CI~~~~~CDg~~DC~DgSDE~~~~C~ 66 (227)
.+|+|.+|+||+..|+|||..||.|+||| .+|.
T Consensus 121 ~~F~C~~g~ci~~~~~c~g~~dC~d~sde--~~C~ 153 (913)
T 3t5o_A 121 NKFRCDSGRCIARKLECNGENDCGDNSDE--RDCG 153 (913)
T ss_dssp SEEECTTSCEEEGGGSSSSSCCSSSSGGG--TTCS
T ss_pred cccccCCCceEccceecCCcccCCCcccc--ccCC
Confidence 67999999999999999999999999999 8897
Done!