RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17376
(227 letters)
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex,
beta propeller, cholesterol clearance, PCSK
autocatalytic cleavage; 7.01A {Homo sapiens}
Length = 791
Score = 96.1 bits (238), Expect = 4e-23
Identities = 42/126 (33%), Positives = 54/126 (42%), Gaps = 13/126 (10%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS--- 90
FQC +CI +C+G EC +G DES C + C +F C
Sbjct: 29 FQCQDGKCISYKWVCDGSAECQDGSDESQETC----------LSVTCKSGDFSCGGRVNR 78
Query: 91 CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
CI RCD DC+ G DE C C ++C + CI VC+ DC D SDE
Sbjct: 79 CIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEA 138
Query: 151 ECSLFT 156
C + T
Sbjct: 139 SCPVLT 144
Score = 93.4 bits (231), Expect = 4e-22
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
FQCN + CI + C+ P+C +G DE + + C EF C + CI
Sbjct: 150 FQCNSSTCIPQLWACDNDPDCEDGSDEWP--QRCRGLYVFQGDSSPCSAFEFHCLSGECI 207
Query: 93 DHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
RCD DC+ DE +C C ++CS+ CI + C+ DC D SDE+ C
Sbjct: 208 HSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 267
Score = 83.3 bits (205), Expect = 1e-18
Identities = 39/122 (31%), Positives = 52/122 (42%), Gaps = 15/122 (12%)
Query: 34 FQCN--QTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS- 90
F C +CI + C+G +C NG DE P C +EFRC +
Sbjct: 70 FSCGGRVNRCIPQFWRCDGQVDCDNGSDE------------QGCPPKTCSQDEFRCHDGK 117
Query: 91 CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
CI CD +DC G DE C C + ++C++ CIP C+ DC D SDE
Sbjct: 118 CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 177
Query: 151 EC 152
Sbjct: 178 PQ 179
Score = 80.3 bits (197), Expect = 1e-17
Identities = 44/122 (36%), Positives = 60/122 (49%), Gaps = 15/122 (12%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSN-SCI 92
F C +CI + C+G P+C + DE C C P+EF+CS+ +CI
Sbjct: 199 FHCLSGECIHSSWRCDGGPDCKDKSDE--ENCA----------VATCRPDEFQCSDGNCI 246
Query: 93 DHLKRCDRTQDCELGEDEIDCK--TYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
++CDR DC+ DE+ C T + +KC + CI LDKVCN DC D SDE
Sbjct: 247 HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP 306
Query: 151 EC 152
Sbjct: 307 IK 308
Score = 79.9 bits (196), Expect = 2e-17
Identities = 38/134 (28%), Positives = 55/134 (41%), Gaps = 23/134 (17%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
F+C+ +CI +C+ +C +G DE+ C P F+C++S CI
Sbjct: 111 FRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT------------CGPASFQCNSSTCI 158
Query: 93 DHLKRCDRTQDCELGEDEIDC----------KTYMCPVSHYKCSNDFCIPLDKVCNFIDD 142
L CD DCE G DE + C + C + CI C+ D
Sbjct: 159 PQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPD 218
Query: 143 CGDNSDEMECSLFT 156
C D SDE C++ T
Sbjct: 219 CKDKSDEENCAVAT 232
Score = 61.4 bits (148), Expect = 3e-11
Identities = 33/137 (24%), Positives = 52/137 (37%), Gaps = 28/137 (20%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
FQC+ CI + C+ +C + DE + L PN+F+C + CI
Sbjct: 238 FQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNV----------TLCEGPNKFKCHSGECI 287
Query: 93 DHLKRCDRTQDCELGEDE--IDCKTYMCPVSHYKCS---------------NDFCIPLDK 135
K C+ +DC DE +C T C ++ CS + F + +
Sbjct: 288 TLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR 347
Query: 136 VCNFIDDCGDNSDEMEC 152
C ID+C D +
Sbjct: 348 RCEDIDECQDPDTCSQL 364
Score = 49.5 bits (117), Expect = 4e-07
Identities = 19/107 (17%), Positives = 36/107 (33%), Gaps = 6/107 (5%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDL------LPNPLGCLPNEFRC 87
F+C+ +CI +CN +C + DE + CG D + N L
Sbjct: 279 FKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCP 338
Query: 88 SNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLD 134
+ +RC+ +C+ + + +C F +
Sbjct: 339 DGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPH 385
Score = 43.3 bits (101), Expect = 4e-05
Identities = 13/57 (22%), Positives = 22/57 (38%), Gaps = 1/57 (1%)
Query: 97 RCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
+ T L C + ++C + CI VC+ +C D SDE + +
Sbjct: 4 KLRWTVALLLAAAGTAVGD-RCERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET 59
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial
hypercholesterolemia, cholestero metabolism, lipid
transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens}
SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1
g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A
1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A
Length = 699
Score = 93.7 bits (232), Expect = 2e-22
Identities = 42/123 (34%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC---SNS 90
FQC +CI +C+G EC +G DES C + C +F C N
Sbjct: 11 FQCQDGKCISYKWVCDGSAECQDGSDESQETC----------LSVTCKSGDFSCGGRVNR 60
Query: 91 CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
CI RCD DC+ G DE C C ++C + CI VC+ DC D SDE
Sbjct: 61 CIPQFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHDGKCISRQFVCDSDRDCLDGSDEA 120
Query: 151 ECS 153
C
Sbjct: 121 SCP 123
Score = 92.2 bits (228), Expect = 9e-22
Identities = 39/120 (32%), Positives = 55/120 (45%), Gaps = 3/120 (2%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSN-SCI 92
FQCN + CI + C+ P+C +G DE + + C EF C + CI
Sbjct: 132 FQCNSSTCIPQLWACDNDPDCEDGSDEWP--QRCRGLYVFQGDSSPCSAFEFHCLSGECI 189
Query: 93 DHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
RCD DC+ DE +C C ++CS+ CI + C+ DC D SDE+ C
Sbjct: 190 HSSWRCDGGPDCKDKSDEENCAVATCRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 249
Score = 81.8 bits (201), Expect = 4e-18
Identities = 39/123 (31%), Positives = 52/123 (42%), Gaps = 15/123 (12%)
Query: 34 FQC--NQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSN-S 90
F C +CI + C+G +C NG DE C C +EFRC +
Sbjct: 52 FSCGGRVNRCIPQFWRCDGQVDCDNGSDEQ--GCPPKT----------CSQDEFRCHDGK 99
Query: 91 CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
CI CD +DC G DE C C + ++C++ CIP C+ DC D SDE
Sbjct: 100 CISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEW 159
Query: 151 ECS 153
Sbjct: 160 PQR 162
Score = 79.5 bits (195), Expect = 2e-17
Identities = 43/122 (35%), Positives = 58/122 (47%), Gaps = 15/122 (12%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
F C +CI + C+G P+C + DE C P+EF+CS+ CI
Sbjct: 181 FHCLSGECIHSSWRCDGGPDCKDKSDEENCAVAT------------CRPDEFQCSDGNCI 228
Query: 93 DHLKRCDRTQDCELGEDEIDCK--TYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
++CDR DC+ DE+ C T + +KC + CI LDKVCN DC D SDE
Sbjct: 229 HGSRQCDREYDCKDMSDEVGCVNVTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEP 288
Query: 151 EC 152
Sbjct: 289 IK 290
Score = 76.0 bits (186), Expect = 4e-16
Identities = 38/131 (29%), Positives = 55/131 (41%), Gaps = 23/131 (17%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
F+C+ +CI +C+ +C +G DE+ L C P F+C++S CI
Sbjct: 93 FRCHDGKCISRQFVCDSDRDCLDGSDEA------------SCPVLTCGPASFQCNSSTCI 140
Query: 93 DHLKRCDRTQDCELGEDEIDCK----------TYMCPVSHYKCSNDFCIPLDKVCNFIDD 142
L CD DCE G DE + + C + C + CI C+ D
Sbjct: 141 PQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSGECIHSSWRCDGGPD 200
Query: 143 CGDNSDEMECS 153
C D SDE C+
Sbjct: 201 CKDKSDEENCA 211
Score = 69.8 bits (170), Expect = 5e-14
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 5/79 (6%)
Query: 80 CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEID--CKTYMCPVSHYKCSNDF--CIPLD 134
C NEF+C + CI + CD + +C+ G DE C + C + C CIP
Sbjct: 6 CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRVNRCIPQF 65
Query: 135 KVCNFIDDCGDNSDEMECS 153
C+ DC + SDE C
Sbjct: 66 WRCDGQVDCDNGSDEQGCP 84
Score = 60.6 bits (146), Expect = 6e-11
Identities = 32/146 (21%), Positives = 52/146 (35%), Gaps = 28/146 (19%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
FQC+ CI + C+ +C + DE + L PN+F+C + CI
Sbjct: 220 FQCSDGNCIHGSRQCDREYDCKDMSDEVGCVNV----------TLCEGPNKFKCHSGECI 269
Query: 93 DHLKRCDRTQDCELGEDE-------IDCKTYMCPVSH----------YKCSNDFCIPLDK 135
K C+ +DC DE +C SH C + F + +
Sbjct: 270 TLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR 329
Query: 136 VCNFIDDCGDNSDEMECSLFTFLSFR 161
C ID+C D + + ++
Sbjct: 330 RCEDIDECQDPDTCSQLCVNLEGGYK 355
Score = 47.9 bits (113), Expect = 1e-06
Identities = 20/125 (16%), Positives = 39/125 (31%), Gaps = 6/125 (4%)
Query: 25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPN-----PLG 79
V+ F+C+ +CI +CN +C + DE + CG D
Sbjct: 252 VTLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIKECGTNECLDNNGGCSHVCNDL 311
Query: 80 CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCN 138
+ E C + + +RC+ +C+ + + +C F +
Sbjct: 312 KIGYECLCPDGFQLVAQRRCEDIDECQDPDTCSQLCVNLEGGYKCQCEEGFQLDPHTKAC 371
Query: 139 FIDDC 143
Sbjct: 372 KAVGS 376
>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein
complex, RAP, escort protein, calcium- binding; 1.26A
{Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B
Length = 80
Score = 82.7 bits (205), Expect = 5e-21
Identities = 27/75 (36%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 80 CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCN 138
C EFRC + CI CD +DC G DE C C + ++C++ CIP C+
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSSTCIPQLWACD 62
Query: 139 FIDDCGDNSDEMECS 153
DC D SDE
Sbjct: 63 NDPDCEDGSDEWPQR 77
Score = 60.0 bits (146), Expect = 2e-12
Identities = 25/82 (30%), Positives = 38/82 (46%), Gaps = 13/82 (15%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSN-SCI 92
F+C+ +CI +C+ +C +G DE+ C C P F+C++ +CI
Sbjct: 8 FRCHDGKCISRQFVCDSDRDCLDGSDEAS--CPVLT----------CGPASFQCNSSTCI 55
Query: 93 DHLKRCDRTQDCELGEDEIDCK 114
L CD DCE G DE +
Sbjct: 56 PQLWACDNDPDCEDGSDEWPQR 77
Score = 48.4 bits (116), Expect = 3e-08
Identities = 14/39 (35%), Positives = 20/39 (51%)
Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFT 156
C + ++C + CI VC+ DC D SDE C + T
Sbjct: 3 CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASCPVLT 41
Score = 36.1 bits (84), Expect = 8e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
FQCN + CI + C+ P+C +G DE C
Sbjct: 47 FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 78
>2fyj_A Low-density lipoprotein receptor-related protein 1; double module,
complement type repeat, calcium, beta-2 hairpin,
loop-structures; NMR {Homo sapiens} PDB: 2fyl_B
Length = 82
Score = 80.8 bits (200), Expect = 2e-20
Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 80 CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDCKTYM--CPVSHYKCSNDFCIPLDKV 136
C PN+F C++ CI CD DC DE Y P++ + C+N CI ++
Sbjct: 5 CPPNQFSCASGRCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNGRCININWR 64
Query: 137 CNFIDDCGDNSDEMECS 153
C+ +DCGDNSDE CS
Sbjct: 65 CDNDNDCGDNSDEAGCS 81
Score = 61.1 bits (149), Expect = 6e-13
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 11/81 (13%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS-CI 92
F C +CI + C+ +CG+ DES + P +F C+N CI
Sbjct: 10 FSCASGRCIPISWTCDLDDDCGDRSDESASCA----------YPTCFPLTQFTCNNGRCI 59
Query: 93 DHLKRCDRTQDCELGEDEIDC 113
+ RCD DC DE C
Sbjct: 60 NINWRCDNDNDCGDNSDEAGC 80
>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen
activating factor, S protease, complement system; HET:
NAG; 2.69A {Homo sapiens}
Length = 565
Score = 71.5 bits (175), Expect = 1e-14
Identities = 28/124 (22%), Positives = 43/124 (34%), Gaps = 16/124 (12%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSN-SCI 92
+ + +C G + + + + + F+C N I
Sbjct: 171 LETSLAECTFTKRRTMGYQDFADVVCYTQKADS-------------PMDDFFQCVNGKYI 217
Query: 93 DHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
+K CD DC DE+ CK C + C + CIP CN DC DE+ C
Sbjct: 218 SQMKACDGINDCGDQSDELCCKA--CQGKGFHCKSGVCIPSQYQCNGEVDCITGEDEVGC 275
Query: 153 SLFT 156
+ F
Sbjct: 276 AGFA 279
Score = 58.0 bits (140), Expect = 4e-10
Identities = 20/96 (20%), Positives = 27/96 (28%), Gaps = 7/96 (7%)
Query: 75 PNPLGCLPNEFRCSNS------CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSND 128
+ C C +R QD ++C N
Sbjct: 156 LSINSTECLHVHCRGLETSLAECTFTKRRTMGYQDFADVVCYTQKAD-SPMDDFFQCVNG 214
Query: 129 FCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNK 164
I K C+ I+DCGD SDE+ C F
Sbjct: 215 KYISQMKACDGINDCGDQSDELCCKACQGKGFHCKS 250
Score = 46.1 bits (109), Expect = 4e-06
Identities = 27/125 (21%), Positives = 44/125 (35%), Gaps = 19/125 (15%)
Query: 25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNE 84
+ + FQC + I + C+GI +CG+ DE C
Sbjct: 200 KADSPMDDFFQCVNGKYISQMKACDGINDCGDQSDELCCKA--------------CQGKG 245
Query: 85 FRCSNS-CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSH--YKCSNDFCIPLDKVCNFID 141
F C + CI +C+ DC GEDE+ C + + D ++ + +
Sbjct: 246 FHCKSGVCIPSQYQCNGEVDCITGEDEVGCAGFASVAQEETEILTADMDAERRRIKSLLP 305
Query: 142 --DCG 144
CG
Sbjct: 306 KLSCG 310
>3a7q_B Low-density lipoprotein receptor-related protein; signaling
protein; HET: NAG; 2.60A {Homo sapiens}
Length = 44
Score = 48.4 bits (116), Expect = 1e-08
Identities = 15/40 (37%), Positives = 21/40 (52%)
Query: 113 CKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
C ++C N+ CIP C+ DDC D+SDE +C
Sbjct: 3 GPAKECEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 41.1 bits (97), Expect = 6e-06
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 80 CLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDC 113
C ++F+C N CI + RCD DC DE DC
Sbjct: 8 CEKDQFQCRNERCIPSVWRCDEDDDCLDHSDEDDC 42
Score = 30.3 bits (69), Expect = 0.045
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDE 60
FQC +CI C+ +C + DE
Sbjct: 13 FQCRNERCIPSVWRCDEDDDCLDHSDE 39
>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding,
calcium binding, complement-like repeat, LRP receptor,
signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1
Length = 44
Score = 47.7 bits (114), Expect = 3e-08
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
C + +KC++ CIP C+ +DCGD SDE +
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40
Score = 38.8 bits (91), Expect = 4e-05
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 80 CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
C +F+C++ CI CD DC DE
Sbjct: 5 CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39
Score = 33.4 bits (77), Expect = 0.004
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
F+CN +CI E C+G +CG+ DE+ A C
Sbjct: 10 FKCNSGRCIPEHWTCDGDNDCGDYSDETHANC 41
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 215
Score = 51.0 bits (121), Expect = 4e-08
Identities = 21/121 (17%), Positives = 34/121 (28%), Gaps = 13/121 (10%)
Query: 35 QCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRC---SNSC 91
+ + +L+ L V + + C +E +C C
Sbjct: 20 SISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPS----------CDEHEHQCGGDDPQC 69
Query: 92 IDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEME 151
I L CD DC GEDE DC + F + + ++S
Sbjct: 70 ISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIGDVCFDHCTKRRPEHMTLAFESSSIAA 129
Query: 152 C 152
Sbjct: 130 F 130
Score = 49.5 bits (117), Expect = 1e-07
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 3/85 (3%)
Query: 72 DLLPNPLGCLPNEFRCSNSCIDHLKRCDRTQDCELGEDEID-CKTYMCPVSHYKCSND-- 128
D L + S +D R + ++ + C ++C D
Sbjct: 8 DKLIERTNKITTSISHVESLLDDRLDPKRIRKAGSLRHRVEELEDPSCDEHEHQCGGDDP 67
Query: 129 FCIPLDKVCNFIDDCGDNSDEMECS 153
CI VC+ +DC + DE +C+
Sbjct: 68 QCISKLFVCDGHNDCRNGEDEKDCT 92
>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium
binding, complement-like repeat, signaling protein; NMR
{Homo sapiens} SCOP: g.12.1.1
Length = 45
Score = 46.9 bits (112), Expect = 5e-08
Identities = 13/35 (37%), Positives = 17/35 (48%)
Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
C + C+N CI C+ +DC DNSDE
Sbjct: 6 CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 39.2 bits (92), Expect = 3e-05
Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 77 PLGCLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
P C P EF C+N CI +CD DC DE
Sbjct: 3 PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40
Score = 36.1 bits (84), Expect = 4e-04
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEY 68
F C ++CI E C+G +C + DE+ A+C ++
Sbjct: 11 FACANSRCIQERWKCDGDNDCLDNSDEAPALCHQH 45
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich
module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Length = 37
Score = 46.0 bits (110), Expect = 9e-08
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
C + C + CI C+ DC D SDE C+
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37
Score = 42.2 bits (100), Expect = 2e-06
Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 80 CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
C EF C + CI RCD DC+ DE +C
Sbjct: 2 CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36
Score = 31.0 bits (71), Expect = 0.022
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDE 60
F C +CI + C+G P+C + DE
Sbjct: 7 FHCLSGECIHSSWRCDGGPDCKDKSDE 33
>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling
protein; NMR {Homo sapiens}
Length = 43
Score = 44.3 bits (105), Expect = 5e-07
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 113 CKTYMCPVSHYKCSND-FCIPLDKVCNFIDDCGDNSDEMEC 152
+ C + ++ C N C+P CN +DDCG+ +DE C
Sbjct: 2 SQDVKCSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 39.3 bits (92), Expect = 3e-05
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 80 CLPNEFRCSNS--CIDHLKRCDRTQDCELGEDEIDC 113
C F C N C+ L C+ DC DE +C
Sbjct: 7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC 42
Score = 32.4 bits (74), Expect = 0.008
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 23 QKVSCNSSRPIFQC-NQTQCILETSLCNGIPECGNGRDE 60
Q V C+ F C N T+C+ + CNG+ +CGN DE
Sbjct: 3 QDVKCSLGY--FPCGNITKCLPQLLHCNGVDDCGNQADE 39
>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich
repeat, ligand binding domain, calcium CAGE, ligand
binding protein; NMR {Rattus norvegicus}
Length = 48
Score = 43.1 bits (102), Expect = 1e-06
Identities = 14/42 (33%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 113 CKTYMCPVSHYKCSN-DFCIPLDKVCNFIDDCGDNSDEMECS 153
C + +KC++ CI C+ + DC DNSDE C
Sbjct: 2 AMVLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP 43
Score = 42.7 bits (101), Expect = 2e-06
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 77 PLGCLPNEFRCSN--SCIDHLKRCDRTQDCELGEDEIDCKT 115
L C +F+C++ SCI+ RCD DC DE C T
Sbjct: 4 VLNCTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCPT 44
Score = 28.8 bits (65), Expect = 0.20
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 34 FQC-NQTQCILETSLCNGIPECGNGRDE 60
F+C + + CI C+G+ +C + DE
Sbjct: 12 FKCADGSSCINSRYRCDGVYDCRDNSDE 39
>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand
binding module, ligand binding repeat, compleme repeat,
protein binding; NMR {Homo sapiens}
Length = 50
Score = 43.1 bits (102), Expect = 2e-06
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Query: 113 CKTYMCPVSHYKCSND-FCIPLDKVCNFIDDCGDNSDEMECS 153
+ C S + C C+P +C+ DC D +DE +
Sbjct: 2 SEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 43
Score = 39.3 bits (92), Expect = 3e-05
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 80 CLPNEFRCSNS--CIDHLKRCDRTQDCELGEDEIDC 113
C P+ F C + C+ CD +DC G DE
Sbjct: 7 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIA 42
Score = 28.9 bits (65), Expect = 0.17
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 34 FQC-NQTQCILETSLCNGIPECGNGRDESVAMCGEYN 69
F C C+ E LC+G +C +G DES+A YN
Sbjct: 12 FSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYN 48
>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand
binding, calcium binding, LDLR, LRP, lipid binding
protein; NMR {Homo sapiens} SCOP: g.12.1.1
Length = 42
Score = 42.3 bits (100), Expect = 2e-06
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 77 PLGCLPNEFRC--SNSCIDHLKRCDRTQDCELGEDEIDC 113
P GC +EF+C CI RCD DC DE C
Sbjct: 1 PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 40.7 bits (96), Expect = 8e-06
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 117 MCPVSHYKC-SNDFCIPLDKVCNFIDDCGDNSDEMEC 152
C ++C + CIPL C+ DC D+SDE C
Sbjct: 3 GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39
Score = 28.0 bits (63), Expect = 0.26
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Query: 34 FQCNQT-QCILETSLCNGIPECGNGRDE 60
FQC CI C+G +C + DE
Sbjct: 9 FQCRLDGLCIPLRWRCDGDTDCMDSSDE 36
>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module,
COMP repeat, calcium, cell membrane, coated PIT,
cytoplasm, DEVE protein; NMR {Homo sapiens}
Length = 80
Score = 42.5 bits (100), Expect = 5e-06
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 4/50 (8%)
Query: 80 CLPNEFRCSNS--CIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSN 127
C P+ F C + C+ CD +DC G DE C + +
Sbjct: 9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAG--CLYNSTGSGS 56
Score = 41.4 bits (97), Expect = 1e-05
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 112 DCKTYMCPVSHYKCSND-FCIPLDKVCNFIDDCGDNSDEMECS 153
+ C S + C C+P +C+ DC D +DE +
Sbjct: 3 KLEGKTCGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAA 45
Score = 33.7 bits (77), Expect = 0.007
Identities = 18/70 (25%), Positives = 25/70 (35%), Gaps = 18/70 (25%)
Query: 34 FQC-NQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSN--- 89
F C C+ E LC+G +C +G DES+A CL N +
Sbjct: 14 FSCPGTHVCVPERWLCDGDKDCADGADESIAAG--------------CLYNSTGSGSGSG 59
Query: 90 SCIDHLKRCD 99
S + R
Sbjct: 60 STEELRVRLA 69
>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory
protein, hexagonal bilayer, dihedral D6 symmetry; HET:
HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1
g.12.1.1 h.1.32.1
Length = 217
Score = 43.0 bits (100), Expect = 3e-05
Identities = 13/71 (18%), Positives = 22/71 (30%), Gaps = 6/71 (8%)
Query: 89 NSCIDHLKRCDRTQDCELGEDEID----CKTYMCPVSHYKCSNDF--CIPLDKVCNFIDD 142
+ + + D + + + C +C D CI C+ D
Sbjct: 21 HDIEEEYNKLTHDVDKKTIRQLKARISNLEEHHCDEHESECRGDVPECIHDLLFCDGEKD 80
Query: 143 CGDNSDEMECS 153
C D SDE +
Sbjct: 81 CRDGSDEDPET 91
Score = 39.9 bits (92), Expect = 3e-04
Identities = 17/121 (14%), Positives = 34/121 (28%), Gaps = 21/121 (17%)
Query: 35 QCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNS---C 91
+ + + + + ++ E++ C +E C C
Sbjct: 19 KLHDIEEEYNKLTHDVDKKTIRQLKARISNLEEHH----------CDEHESECRGDVPEC 68
Query: 92 IDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEME 151
I L CD +DC G DE C ++ + + C D + +
Sbjct: 69 IHDLLFCDGEKDCRDGSDEDPE---TCSLNITHVGSSYTG-----LATWTSCEDLNPDHA 120
Query: 152 C 152
Sbjct: 121 I 121
Score = 36.4 bits (83), Expect = 0.004
Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 7/122 (5%)
Query: 34 FQC--NQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSC 91
+C + +CI + C+G +C +G DE C + L C +
Sbjct: 59 SECRGDVPECIHDLLFCDGEKDCRDGSDEDPETCSLNITHV--GSSYTGLATWTSCEDLN 116
Query: 92 IDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEME 151
DH + + ++ Y+ + G +
Sbjct: 117 PDHAIVTITAAHR---KSFFPNRVWLRATLSYELDEHDHTVSTTQLRGFYNFGKRELLLA 173
Query: 152 CS 153
Sbjct: 174 PL 175
>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor,
virus-protein complex, icosahedral virus, ATP-binding,
capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB:
1v9u_5*
Length = 39
Score = 39.3 bits (92), Expect = 3e-05
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 118 CPVSHYKCSND--FCIPLDKVCNFIDDCGDNSDEMECS 153
C + C CIP+ C+ +DC DE C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38
Score = 38.9 bits (91), Expect = 4e-05
Identities = 16/37 (43%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 80 CLPNEFRC---SNSCIDHLKRCDRTQDCELGEDEIDC 113
C +E C S CI RCD DC+ GEDE +C
Sbjct: 1 CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37
Score = 28.5 bits (64), Expect = 0.22
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 34 FQC--NQTQCILETSLCNGIPECGNGRDE 60
C + TQCI + C+G +C +G DE
Sbjct: 6 ISCGAHSTQCIPVSWRCDGENDCDSGEDE 34
>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and
PG950; disulfide bond, alpha helix, calcium CAGE,
signaling protein; NMR {Coturnix japonica} SCOP:
g.12.1.1
Length = 47
Score = 39.4 bits (92), Expect = 3e-05
Identities = 16/45 (35%), Positives = 18/45 (40%), Gaps = 6/45 (13%)
Query: 77 PLGCLPNEFRCSNS------CIDHLKRCDRTQDCELGEDEIDCKT 115
C P +FRCS C CD DC+ G DE C T
Sbjct: 2 SSRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGCGT 46
Score = 38.2 bits (89), Expect = 8e-05
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 118 CPVSHYKCS-----NDFCIPLDKVCNFIDDCGDNSDEMEC 152
CP ++CS + C P D +C+ DC D DE C
Sbjct: 5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 44
Score = 29.0 bits (65), Expect = 0.16
Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 5/32 (15%)
Query: 34 FQC-----NQTQCILETSLCNGIPECGNGRDE 60
F+C +C + LC+G P+C +GRDE
Sbjct: 10 FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 41
>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta
hairpin, 3-10 helix, calcium binding, membrane protein;
NMR {Coturnix coturnix} SCOP: g.12.1.1
Length = 47
Score = 38.2 bits (89), Expect = 7e-05
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 5/40 (12%)
Query: 118 CPVSHYKCS-----NDFCIPLDKVCNFIDDCGDNSDEMEC 152
CP ++CS + C P D +C+ DC D DE C
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 37.1 bits (86), Expect = 2e-04
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 6/40 (15%)
Query: 80 CLPNEFRCSNS------CIDHLKRCDRTQDCELGEDEIDC 113
C P +FRCS C CD DC+ G DE C
Sbjct: 7 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 46
Score = 28.2 bits (63), Expect = 0.29
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 7/38 (18%)
Query: 34 FQC-----NQTQCILETSLCNGIPECGNGRDESVAMCG 66
F+C +C + LC+G P+C +GRDE CG
Sbjct: 12 FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE--WGCG 47
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 2e-04
Identities = 46/237 (19%), Positives = 64/237 (27%), Gaps = 85/237 (35%)
Query: 13 VLDVPRTQARQKVSCNSSRPIF-----QCNQTQCILE--TSLCNGI-PECGNGRDESVAM 64
LDV + KV C IF CN + +LE L I P + D S +
Sbjct: 167 ALDVCLSY---KVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNI 223
Query: 65 CGEYN-----IRDLL-----PNPLGCLPN----------EFRC-------SNSCIDHL-- 95
+ +R LL N L L N C D L
Sbjct: 224 KLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA 283
Query: 96 -KRCDRTQDCE---LGEDE--------IDCKTYMCPVSHYKCSNDFCIPL---------- 133
+ D L DE +DC+ P + P
Sbjct: 284 ATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTN-----PRRLSIIAESIR 338
Query: 134 --------------DKVCNFIDDCGDN--SDEMECSLFTFLS-FRLNKKIPRKSISM 173
DK+ I+ + E +F LS F + IP +S+
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR-KMFDRLSVFPPSAHIPTILLSL 394
Score = 31.7 bits (71), Expect = 0.19
Identities = 22/142 (15%), Positives = 38/142 (26%), Gaps = 38/142 (26%)
Query: 68 YNIRDLLPNPLGCLPNEFRCSNSCID---------HLKRCDRTQDCELGED--------- 109
YNI + +P +D HLK + + L
Sbjct: 453 YNIPKTFDSD-DLIPP-------YLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 110 ---EIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNKKI 166
D + S + L +I D + + ++ FL KI
Sbjct: 505 QKIRHDSTAWNASGS----ILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-----PKI 555
Query: 167 PRKSISMTSAKMNQQALLTGNE 188
I + + AL+ +E
Sbjct: 556 EENLICSKYTDLLRIALMAEDE 577
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune
system; HET: TPO BMA; 2.51A {Homo sapiens}
Length = 554
Score = 36.9 bits (84), Expect = 0.004
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 80 CLPNEFRCSNSCIDHL---KRCD-RTQDCELGEDEIDCKTYMCPVSHYKCSND-FCIPLD 134
C ++R + + C D C ++C C+
Sbjct: 23 CQDKKYRHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQCGQDFQCKETGRCLKRH 82
Query: 135 KVCNFIDDCGDNSDEMEC 152
VCN DC D SDE +C
Sbjct: 83 LVCNGDQDCLDGSDEDDC 100
Score = 31.5 bits (70), Expect = 0.20
Identities = 22/120 (18%), Positives = 33/120 (27%), Gaps = 6/120 (5%)
Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCID 93
F C + SL G + + C +F+C +
Sbjct: 21 FPCQDKKY-RHRSLLQPNKFGGTICSGDIWDQASCSSSTTCVRQAQC-GQDFQCKETGRC 78
Query: 94 HLKR--CDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEME 151
+ C+ QDC G DE DC+ CS IP + + D
Sbjct: 79 LKRHLVCNGDQDCLDGSDEDDCEDVRAI--DEDCSQYEPIPGSQKAALGYNILTQEDAQS 136
Score = 26.9 bits (58), Expect = 6.5
Identities = 21/114 (18%), Positives = 34/114 (29%), Gaps = 11/114 (9%)
Query: 34 FQCNQT-QCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCI 92
FQC +T +C+ +CNG +C +G D E + D+ C E +
Sbjct: 70 FQCKETGRCLKRHLVCNGDQDCLDGSD-------EDDCEDVRAIDEDCSQYEPIPGSQKA 122
Query: 93 DHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDN 146
+D + D Y + D C + D
Sbjct: 123 ALGYNILTQEDA---QSVYDASYYGGQCETVYNGEWRELRYDSTCERLYYGDDE 173
>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid
erythrocruorins, respiratory protein, hexagonal bilayer,
dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus
terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Length = 220
Score = 35.6 bits (81), Expect = 0.007
Identities = 18/122 (14%), Positives = 31/122 (25%), Gaps = 21/122 (17%)
Query: 34 FQC--NQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSC 91
FQC N+ +CI + +C+G +C N DE +C + S
Sbjct: 58 FQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC----------DTSVVKAGNVFSGTST 107
Query: 92 IDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEME 151
C ED + T + + + +
Sbjct: 108 WHG---------CLAREDHVTRITITASKRRKFFTARIWLRALVESELERHGENVTSSFN 158
Query: 152 CS 153
Sbjct: 159 AK 160
Score = 34.1 bits (77), Expect = 0.021
Identities = 12/67 (17%), Positives = 24/67 (35%), Gaps = 3/67 (4%)
Query: 90 SCIDHLKRCDRTQDCELGEDEID-CKTYMCPVSHYKCSND--FCIPLDKVCNFIDDCGDN 146
+ +D ++ D + + + C ++C + CI VC+ DC +
Sbjct: 24 TKLDEAEKIDPEHFVSEIDARVTKIEGTHCEKRTFQCGGNEQECISDLLVCDGHKDCHNA 83
Query: 147 SDEMECS 153
DE
Sbjct: 84 HDEDPDV 90
>3rcn_A Beta-N-acetylhexosaminidase; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
half sandwich; HET: MSE; 2.51A {Arthrobacter aurescens}
Length = 543
Score = 28.5 bits (64), Expect = 2.0
Identities = 5/38 (13%), Positives = 12/38 (31%)
Query: 105 ELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDD 142
ELG D + + + + + + F +
Sbjct: 259 ELGAGPADGSSPVEVWTRWGINETVLEVSETSLEFYRN 296
>2y9y_B IOC3, ISWI one complex protein 3; transcription, nuclear protein
complex, chromatin remodeling nucleosome remodeling;
3.25A {Saccharomyces cerevisiae} PDB: 2y9z_B
Length = 624
Score = 28.0 bits (61), Expect = 2.9
Identities = 16/86 (18%), Positives = 24/86 (27%)
Query: 102 QDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFR 161
QD E+G D K D + L I D D+M + L
Sbjct: 81 QDFEVGLDLYPGDPNGSAAGIVKGPEDTSLLLYPDFMAIKDIVYCQDKMNLLFLSLLDLT 140
Query: 162 LNKKIPRKSISMTSAKMNQQALLTGN 187
+ KS + L + +
Sbjct: 141 FTENFDGKSAKKKGPLTTWENLKSSS 166
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 27.5 bits (61), Expect = 3.6
Identities = 8/78 (10%), Positives = 13/78 (16%), Gaps = 20/78 (25%)
Query: 96 KRCDRTQDCELGEDEIDCKTY--------------------MCPVSHYKCSNDFCIPLDK 135
C + C V+ +C
Sbjct: 34 LPCLAWASAQAKALSKHQDFNSAVQLVENFCRNPDGDEEGVWCYVAGKPGDFGYCDLNYC 93
Query: 136 VCNFIDDCGDNSDEMECS 153
++ GD DE
Sbjct: 94 EEAVEEETGDGLDEDSDR 111
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 27.3 bits (60), Expect = 5.4
Identities = 15/124 (12%), Positives = 29/124 (23%), Gaps = 3/124 (2%)
Query: 25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNE 84
+ + +D C + + D + +
Sbjct: 153 WPNLNLVCATNATYHCIKDNCPHLPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLL 212
Query: 85 FRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCG 144
F + D + DR +C + T + I D V N D+C
Sbjct: 213 FNPRQADYDKDEVGDRCDNCPYVHNPAQIDTDNNGEG---DACSVDIDGDDVFNERDNCP 269
Query: 145 DNSD 148
+
Sbjct: 270 YVYN 273
>3bjc_A CGMP-specific 3',5'-cyclic phosphodiesterase; PDE5, erectIle
dysfunction, inhibitor design, allosteric enzyme,
alternative splicing, CGMP binding; HET: WAN; 2.00A
{Homo sapiens} SCOP: a.211.1.2 PDB: 3mf0_A 3lfv_A 2xss_A
2k31_A*
Length = 878
Score = 27.1 bits (59), Expect = 5.8
Identities = 9/66 (13%), Positives = 18/66 (27%)
Query: 81 LPNEFRCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFI 140
L + LK D + D + + +F + + +C +I
Sbjct: 543 LQSLAAAVVPSAQTLKITDFSFSDFELSDLETALCTIRMFTDLNLVQNFQMKHEVLCRWI 602
Query: 141 DDCGDN 146
N
Sbjct: 603 LSVKKN 608
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G,
beta-propeller, protein binding; 3.30A {Rattus
norvegicus}
Length = 386
Score = 26.7 bits (58), Expect = 7.1
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 80 CLPNEFRCSNSCIDHLK--RCDRTQDCELGEDEIDCKTYMCPVSHYKCS 126
C N C+ C +C L ED C+ CS
Sbjct: 6 CNVNNGGCAQKCQMIRGAVQCTCHTGYRLTEDGRTCQDVNECAEEGYCS 54
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling
protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2
PDB: 1joe_A
Length = 175
Score = 26.2 bits (58), Expect = 8.0
Identities = 10/48 (20%), Positives = 20/48 (41%), Gaps = 6/48 (12%)
Query: 42 ILETSLCNGIP-----ECGNGRDESVAMCGEYNIRDLLPNPLGCLPNE 84
+L IP +CG+ + S+ E ++++ +G NE
Sbjct: 111 VLGVQDQASIPELNIYQCGSYTEHSLEDAHEI-AKNVIARGIGVNKNE 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.453
Gapped
Lambda K H
0.267 0.0502 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,342,279
Number of extensions: 185098
Number of successful extensions: 595
Number of sequences better than 10.0: 1
Number of HSP's gapped: 490
Number of HSP's successfully gapped: 143
Length of query: 227
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 137
Effective length of database: 4,188,903
Effective search space: 573879711
Effective search space used: 573879711
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.5 bits)