RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17376
         (227 letters)



>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density
           lipoprotein receptor {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 39

 Score = 46.6 bits (111), Expect = 2e-08
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C    ++CS+  CI   + C+   DC D SDE+ C
Sbjct: 3   CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGC 37



 Score = 40.8 bits (96), Expect = 3e-06
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDCK 114
           C P+EF+CS+ +CI   ++CDR  DC+   DE+ C 
Sbjct: 3   CRPDEFQCSDGNCIHGSRQCDREYDCKDMSDEVGCV 38



 Score = 31.6 bits (72), Expect = 0.006
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDE 60
          FQC+   CI  +  C+   +C +  DE
Sbjct: 8  FQCSDGNCIHGSRQCDREYDCKDMSDE 34


>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density
           lipoprotein receptor {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 37

 Score = 46.3 bits (110), Expect = 3e-08
 Identities = 12/36 (33%), Positives = 16/36 (44%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
           C    + C +  CI     C+   DC D SDE  C+
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENCA 37



 Score = 39.3 bits (92), Expect = 1e-05
 Identities = 14/35 (40%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           C   EF C +  CI    RCD   DC+   DE +C
Sbjct: 2   CSAFEFHCLSGECIHSSWRCDGGPDCKDKSDEENC 36



 Score = 30.9 bits (70), Expect = 0.009
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDE 60
          F C   +CI  +  C+G P+C +  DE
Sbjct: 7  FHCLSGECIHSSWRCDGGPDCKDKSDE 33


>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density
           lipoprotein receptor {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 44

 Score = 46.3 bits (110), Expect = 3e-08
 Identities = 14/35 (40%), Positives = 20/35 (57%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C  + +KC++  CIP    C+  +DCGD SDE   
Sbjct: 5   CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHA 39



 Score = 38.6 bits (90), Expect = 2e-05
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)

Query: 80  CLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDCK 114
           C   +F+C++  CI     CD   DC    DE    
Sbjct: 5   CSSTQFKCNSGRCIPEHWTCDGDNDCGDYSDETHAN 40



 Score = 33.6 bits (77), Expect = 0.001
 Identities = 14/32 (43%), Positives = 20/32 (62%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
          F+CN  +CI E   C+G  +CG+  DE+ A C
Sbjct: 10 FKCNSGRCIPEHWTCDGDNDCGDYSDETHANC 41


>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density
           lipoprotein receptor {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 39

 Score = 45.8 bits (109), Expect = 4e-08
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C  + ++C +  CI    VC+   DC D SDE  C
Sbjct: 3   CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37



 Score = 39.7 bits (93), Expect = 7e-06
 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 1/35 (2%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           C   EFRC +  CI     CD  +DC  G DE  C
Sbjct: 3   CSQAEFRCHDGKCISRQFVCDSDRDCLDGSDEASC 37



 Score = 32.0 bits (73), Expect = 0.004
 Identities = 9/27 (33%), Positives = 16/27 (59%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDE 60
          F+C+  +CI    +C+   +C +G DE
Sbjct: 8  FRCHDGKCISRQFVCDSDRDCLDGSDE 34


>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
           lipoprotein receptor {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 44

 Score = 45.6 bits (108), Expect = 6e-08
 Identities = 11/36 (30%), Positives = 19/36 (52%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
           C  + ++C +  CI    VC+   +C D SDE + +
Sbjct: 8   CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQET 43



 Score = 37.1 bits (86), Expect = 7e-05
 Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)

Query: 80  CLPNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           C  NEF+C +  CI +   CD + +C+ G DE   
Sbjct: 8   CERNEFQCQDGKCISYKWVCDGSAECQDGSDESQE 42



 Score = 34.4 bits (79), Expect = 6e-04
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
          FQC   +CI    +C+G  EC +G DES   C
Sbjct: 13 FQCQDGKCISYKWVCDGSAECQDGSDESQETC 44


>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density
           lipoprotein receptor {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 45

 Score = 45.6 bits (108), Expect = 6e-08
 Identities = 13/36 (36%), Positives = 17/36 (47%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECS 153
           C    + C+N  CI     C+  +DC DNSDE    
Sbjct: 6   CQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPAL 41



 Score = 37.8 bits (88), Expect = 4e-05
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCGEY 68
          F C  ++CI E   C+G  +C +  DE+ A+C ++
Sbjct: 11 FACANSRCIQERWKCDGDNDCLDNSDEAPALCHQH 45



 Score = 36.7 bits (85), Expect = 8e-05
 Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)

Query: 77  PLGCLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDC 113
           P  C P EF C+NS CI    +CD   DC    DE   
Sbjct: 3   PPQCQPGEFACANSRCIQERWKCDGDNDCLDNSDEAPA 40


>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density
           lipoprotein receptor {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 39

 Score = 44.0 bits (104), Expect = 2e-07
 Identities = 12/35 (34%), Positives = 18/35 (51%)

Query: 118 CPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C  + ++C++  CIP    C+   DC D SDE   
Sbjct: 3   CGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37



 Score = 36.3 bits (84), Expect = 1e-04
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)

Query: 25 VSCNSSRPIFQCNQTQCILETSLCNGIPECGNGRDESVAMC 65
          ++C  +   FQCN + CI +   C+  P+C +G DE    C
Sbjct: 1  LTCGPAS--FQCNSSTCIPQLWACDNDPDCEDGSDEWPQRC 39



 Score = 36.3 bits (84), Expect = 1e-04
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 78  LGCLPNEFRCSNS-CIDHLKRCDRTQDCELGEDEIDC 113
           L C P  F+C++S CI  L  CD   DCE G DE   
Sbjct: 1   LTCGPASFQCNSSTCIPQLWACDNDPDCEDGSDEWPQ 37


>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3
           subunit {Common earthworm (Lumbricus terrestris) [TaxId:
           6398]}
          Length = 41

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 118 CPVSHYKC--SNDFCIPLDKVCNFIDDCGDNSDEMECSL 154
           C    ++C   +  CI    VC+  +DC +  DE +C+L
Sbjct: 3   CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDCTL 41



 Score = 37.1 bits (86), Expect = 6e-05
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 80  CLPNEFRCSNS---CIDHLKRCDRTQDCELGEDEIDC 113
           C  +E +C      CI  L  CD   DC  GEDE DC
Sbjct: 3   CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC 39



 Score = 25.9 bits (57), Expect = 0.56
 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%)

Query: 34 FQC--NQTQCILETSLCNGIPECGNGRDE 60
           QC  +  QCI +  +C+G  +C NG DE
Sbjct: 8  HQCGGDDPQCISKLFVCDGHNDCRNGEDE 36


>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density
           lipoprotein receptor {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 42

 Score = 41.7 bits (98), Expect = 1e-06
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 117 MCPVSHYKC-SNDFCIPLDKVCNFIDDCGDNSDEMECS 153
            C    ++C  +  CIPL   C+   DC D+SDE  C 
Sbjct: 3   GCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSCE 40



 Score = 41.3 bits (97), Expect = 2e-06
 Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)

Query: 77  PLGCLPNEFRCSNS--CIDHLKRCDRTQDCELGEDEIDC 113
           P GC  +EF+C     CI    RCD   DC    DE  C
Sbjct: 1   PGGCHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC 39



 Score = 27.5 bits (61), Expect = 0.21
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 1/28 (3%)

Query: 34 FQC-NQTQCILETSLCNGIPECGNGRDE 60
          FQC     CI     C+G  +C +  DE
Sbjct: 9  FQCRLDGLCIPLRWRCDGDTDCMDSSDE 36


>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density
           lipoprotein receptor {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 44

 Score = 41.7 bits (98), Expect = 2e-06
 Identities = 17/38 (44%), Positives = 20/38 (52%)

Query: 115 TYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           T     + +KC +  CI LDKVCN   DC D SDE   
Sbjct: 4   TLCEGPNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 41



 Score = 37.8 bits (88), Expect = 3e-05
 Identities = 11/33 (33%), Positives = 18/33 (54%)

Query: 34 FQCNQTQCILETSLCNGIPECGNGRDESVAMCG 66
          F+C+  +CI    +CN   +C +  DE +  CG
Sbjct: 12 FKCHSGECITLDKVCNMARDCRDWSDEPIKECG 44



 Score = 34.0 bits (78), Expect = 0.001
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 82  PNEFRCSN-SCIDHLKRCDRTQDCELGEDEIDC 113
           PN+F+C +  CI   K C+  +DC    DE   
Sbjct: 9   PNKFKCHSGECITLDKVCNMARDCRDWSDEPIK 41


>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density
           lipoprotein receptor {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 41

 Score = 40.6 bits (95), Expect = 4e-06
 Identities = 12/37 (32%), Positives = 16/37 (43%), Gaps = 2/37 (5%)

Query: 118 CPVSHYKC--SNDFCIPLDKVCNFIDDCGDNSDEMEC 152
           C    + C    + CIP    C+   DC + SDE  C
Sbjct: 5   CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41



 Score = 37.5 bits (87), Expect = 4e-05
 Identities = 14/37 (37%), Positives = 16/37 (43%), Gaps = 3/37 (8%)

Query: 80  CLPNEFRCSNS---CIDHLKRCDRTQDCELGEDEIDC 113
           C   +F C      CI    RCD   DC+ G DE  C
Sbjct: 5   CKSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC 41



 Score = 27.8 bits (62), Expect = 0.14
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)

Query: 25 VSCNSSRPIFQCNQT--QCILETSLCNGIPECGNGRDE 60
          V+C S    F C     +CI +   C+G  +C NG DE
Sbjct: 3  VTCKSGD--FSCGGRVNRCIPQFWRCDGQVDCDNGSDE 38


>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 39

 Score = 40.2 bits (94), Expect = 5e-06
 Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 118 CPVSHYKCSN--DFCIPLDKVCNFIDDCGDNSDEMECS 153
           C +    C      CIP+   C+  +DC    DE  C 
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENCG 38



 Score = 37.5 bits (87), Expect = 4e-05
 Identities = 15/37 (40%), Positives = 18/37 (48%), Gaps = 3/37 (8%)

Query: 80  CLPNEFRCSNS---CIDHLKRCDRTQDCELGEDEIDC 113
           C  +E  C      CI    RCD   DC+ GEDE +C
Sbjct: 1   CRIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC 37



 Score = 27.5 bits (61), Expect = 0.17
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 34 FQC--NQTQCILETSLCNGIPECGNGRDE 60
            C  + TQCI  +  C+G  +C +G DE
Sbjct: 6  ISCGAHSTQCIPVSWRCDGENDCDSGEDE 34


>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail
           (Coturnix coturnix) [TaxId: 9091]}
          Length = 42

 Score = 39.5 bits (92), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)

Query: 118 CPVSHYKCSNDF-----CIPLDKVCNFIDDCGDNSDEMEC 152
           CP   ++CS        C P D +C+   DC D  DE  C
Sbjct: 2   CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41



 Score = 37.6 bits (87), Expect = 4e-05
 Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 6/40 (15%)

Query: 80  CLPNEFRCSNS------CIDHLKRCDRTQDCELGEDEIDC 113
           C P +FRCS        C      CD   DC+ G DE  C
Sbjct: 2   CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC 41



 Score = 26.0 bits (57), Expect = 0.65
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 5/32 (15%)

Query: 34 FQCNQT-----QCILETSLCNGIPECGNGRDE 60
          F+C++      +C  +  LC+G P+C +GRDE
Sbjct: 7  FRCSEPPGAHGECYPQDWLCDGHPDCDDGRDE 38


>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2
           subunit {Common earthworm (Lumbricus terrestris) [TaxId:
           6398]}
          Length = 41

 Score = 37.9 bits (88), Expect = 3e-05
 Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)

Query: 118 CPVSHYKCSND--FCIPLDKVCNFIDDCGDNSDEMEC 152
           C    ++C  +   CI    VC+   DC +  DE   
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38



 Score = 33.7 bits (77), Expect = 0.001
 Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 80  CLPNEFRCSNS---CIDHLKRCDRTQDCELGEDEIDC 113
           C    F+C  +   CI  L  CD  +DC    DE   
Sbjct: 2   CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPD 38



 Score = 30.6 bits (69), Expect = 0.013
 Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 2/34 (5%)

Query: 34 FQC--NQTQCILETSLCNGIPECGNGRDESVAMC 65
          FQC  N+ +CI +  +C+G  +C N  DE   +C
Sbjct: 7  FQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVC 40


>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common
           earthworm (Lumbricus terrestris) [TaxId: 6398]}
          Length = 42

 Score = 37.1 bits (86), Expect = 6e-05
 Identities = 12/37 (32%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 118 CPVSHYKCSNDF--CIPLDKVCNFIDDCGDNSDEMEC 152
           C     +C  D   CI     C+   DC D SDE   
Sbjct: 3   CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39



 Score = 33.3 bits (76), Expect = 0.002
 Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 3/37 (8%)

Query: 80  CLPNEFRCSNS---CIDHLKRCDRTQDCELGEDEIDC 113
           C  +E  C      CI  L  CD  +DC  G DE   
Sbjct: 3   CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE 39



 Score = 31.4 bits (71), Expect = 0.007
 Identities = 10/34 (29%), Positives = 17/34 (50%), Gaps = 2/34 (5%)

Query: 34 FQC--NQTQCILETSLCNGIPECGNGRDESVAMC 65
           +C  +  +CI +   C+G  +C +G DE    C
Sbjct: 8  SECRGDVPECIHDLLFCDGEKDCRDGSDEDPETC 41


>d3c7ba3 d.134.1.1 (A:167-238,A:305-417) Dissimilatory sulfite
           reductase subunit alpha, DsrA {Archaeoglobus fulgidus
           [TaxId: 2234]}
          Length = 185

 Score = 26.2 bits (57), Expect = 2.5
 Identities = 11/71 (15%), Positives = 17/71 (23%)

Query: 86  RCSNSCIDHLKRCDRTQDCELGEDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGD 145
            C  +C D L+ C         E       Y   +    C ND      +    I     
Sbjct: 14  LCEFACYDTLELCYDLTMTYQDELHRPMWPYKFKIKCAGCPNDCVASKARSDFAIIGTWR 73

Query: 146 NSDEMECSLFT 156
            +  +      
Sbjct: 74  GATILIGGKAP 84


>d1rxya_ c.56.2.1 (A:) Uridine phosphorylase {Escherichia coli
           [TaxId: 562]}
          Length = 250

 Score = 26.2 bits (57), Expect = 3.5
 Identities = 17/158 (10%), Positives = 28/158 (17%), Gaps = 6/158 (3%)

Query: 33  IFQCNQTQCILETSLCNGIPECGNGRDESVAMCGEYNIRDLLPNPLGCLPNEFRCSNSCI 92
                  +  L       I    N  D  V         D        L         C 
Sbjct: 77  ELAQLGIRTFLRIGTTGAIQPHINVGDVLVTTASVRL--DGASLHFAPLEFPAVADFECT 134

Query: 93  DHLKRCDRTQDCELGEDEIDCKT--YMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEM 150
             L    ++                Y     +   S                 G  + EM
Sbjct: 135 TALVEAAKSIGATTHVGVTASSDTFYPGQERYDTYSGRVVRHFKGSMEEWQAMGVMNYEM 194

Query: 151 ECSLFTFLSFRLNKKIPRKSISMTSAKMNQQALLTGNE 188
           E +    +       +    ++       QQ +     
Sbjct: 195 ESATLLTMCASQG--LRAGMVAGVIVNRTQQEIPNAET 230


>d1vhwa_ c.56.2.1 (A:) Purine nucleoside phosphorylase, PNP {Vibrio
           cholerae [TaxId: 666]}
          Length = 237

 Score = 25.9 bits (56), Expect = 3.5
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 108 EDEIDCKTYMCPVSHYKCSNDFCIPLDKVCNFIDDCGDNSDEMECSLFTFLSFRLNKKIP 167
           E+    +     V +   +  F  P   + + +D  G    EME +    ++        
Sbjct: 138 EEAAKARGIDVKVGNLFSAELFYTPDPSMFDVMDKYGIVGVEMEAAGIYGVAAEYG--AK 195

Query: 168 RKSISMTSAKMNQQALLTGNE 188
             +I   S  +      T  E
Sbjct: 196 ALAICTVSDHIKTGEQTTSEE 216


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.453 

Gapped
Lambda     K      H
   0.267   0.0535    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 865,795
Number of extensions: 41445
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 62
Length of query: 227
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 145
Effective length of database: 1,281,736
Effective search space: 185851720
Effective search space used: 185851720
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (23.9 bits)