Query psy17377
Match_columns 106
No_of_seqs 177 out of 1178
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:54:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17377.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17377hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2624|consensus 99.9 1.7E-22 3.6E-27 152.8 4.9 99 6-104 131-238 (403)
2 PLN02872 triacylglycerol lipas 99.7 4E-18 8.6E-23 129.1 3.6 98 5-104 130-234 (395)
3 PF00561 Abhydrolase_1: alpha/ 99.3 1.7E-11 3.7E-16 83.6 7.6 61 10-73 18-78 (230)
4 PLN02824 hydrolase, alpha/beta 98.8 8E-09 1.7E-13 74.3 6.5 50 21-73 87-136 (294)
5 TIGR01836 PHA_synth_III_C poly 98.8 8.2E-09 1.8E-13 76.6 5.4 64 12-78 112-175 (350)
6 TIGR01392 homoserO_Ac_trn homo 98.8 1.1E-08 2.4E-13 75.8 6.1 54 17-73 107-161 (351)
7 PRK06765 homoserine O-acetyltr 98.8 1.7E-08 3.8E-13 76.6 6.1 58 10-67 134-192 (389)
8 PF12697 Abhydrolase_6: Alpha/ 98.8 4.5E-08 9.8E-13 65.5 7.3 54 20-76 50-103 (228)
9 TIGR02240 PHA_depoly_arom poly 98.8 1.7E-08 3.6E-13 72.1 5.5 52 20-74 75-126 (276)
10 PRK07581 hypothetical protein; 98.7 3.1E-08 6.8E-13 72.8 6.8 47 21-67 108-155 (339)
11 PRK10673 acyl-CoA esterase; Pr 98.7 2.9E-08 6.3E-13 69.3 5.7 46 21-66 66-111 (255)
12 KOG4409|consensus 98.7 2.9E-08 6.3E-13 74.1 5.3 54 23-79 147-200 (365)
13 PRK10749 lysophospholipase L2; 98.7 4.4E-08 9.5E-13 72.2 6.1 59 13-75 109-167 (330)
14 PLN02965 Probable pheophorbida 98.6 6.7E-08 1.5E-12 68.3 5.8 48 22-72 57-105 (255)
15 PRK00870 haloalkane dehalogena 98.6 1.4E-07 2.9E-12 68.3 7.2 49 21-72 100-148 (302)
16 PLN02298 hydrolase, alpha/beta 98.6 8.9E-08 1.9E-12 70.1 5.8 59 13-75 110-170 (330)
17 PRK11126 2-succinyl-6-hydroxy- 98.6 1.6E-07 3.4E-12 65.2 6.6 51 21-73 51-101 (242)
18 PRK03592 haloalkane dehalogena 98.6 1.3E-07 2.8E-12 68.0 6.3 49 21-72 78-126 (295)
19 PRK08775 homoserine O-acetyltr 98.6 1E-07 2.2E-12 70.5 5.5 51 20-73 121-172 (343)
20 TIGR03343 biphenyl_bphD 2-hydr 98.6 1.3E-07 2.9E-12 67.0 5.7 49 22-73 87-135 (282)
21 KOG1454|consensus 98.5 2.1E-07 4.6E-12 69.2 6.4 57 24-80 116-172 (326)
22 PHA02857 monoglyceride lipase; 98.5 2.1E-07 4.6E-12 66.1 5.9 51 22-75 83-133 (276)
23 TIGR03056 bchO_mg_che_rel puta 98.5 2.3E-07 5E-12 65.1 6.0 49 21-72 80-128 (278)
24 PRK13604 luxD acyl transferase 98.5 2.5E-07 5.5E-12 68.4 6.4 67 4-77 78-144 (307)
25 PRK03204 haloalkane dehalogena 98.5 2.6E-07 5.6E-12 66.8 6.2 51 20-73 85-135 (286)
26 PLN03087 BODYGUARD 1 domain co 98.5 2.5E-07 5.4E-12 72.1 6.4 48 24-74 261-309 (481)
27 TIGR01250 pro_imino_pep_2 prol 98.5 2.5E-07 5.5E-12 64.4 5.8 46 20-65 80-125 (288)
28 TIGR01839 PHA_synth_II poly(R) 98.5 2.1E-07 4.5E-12 73.5 5.7 72 2-77 256-331 (560)
29 PLN02733 phosphatidylcholine-s 98.5 2.3E-07 5E-12 71.6 5.8 56 19-74 145-201 (440)
30 PLN02385 hydrolase; alpha/beta 98.5 2E-07 4.3E-12 69.0 5.2 37 36-75 162-198 (349)
31 TIGR03101 hydr2_PEP hydrolase, 98.5 4.9E-07 1.1E-11 65.6 6.9 58 20-81 84-141 (266)
32 PRK06489 hypothetical protein; 98.5 2.2E-07 4.7E-12 69.2 5.1 37 29-65 146-183 (360)
33 TIGR01249 pro_imino_pep_1 prol 98.5 4.4E-07 9.5E-12 66.0 6.3 46 20-65 79-124 (306)
34 PRK10349 carboxylesterase BioH 98.5 4.9E-07 1.1E-11 63.6 6.2 45 20-65 59-103 (256)
35 PRK00175 metX homoserine O-ace 98.5 3.7E-07 8E-12 68.6 5.8 48 18-65 128-176 (379)
36 PLN02894 hydrolase, alpha/beta 98.5 5.3E-07 1.1E-11 68.5 6.5 51 23-76 163-213 (402)
37 PLN02652 hydrolase; alpha/beta 98.4 5.9E-07 1.3E-11 68.3 6.7 63 13-77 186-248 (395)
38 TIGR03611 RutD pyrimidine util 98.4 4.2E-07 9.1E-12 62.5 5.1 51 20-73 64-114 (257)
39 PLN02679 hydrolase, alpha/beta 98.4 7.7E-07 1.7E-11 66.5 6.5 51 21-74 140-191 (360)
40 TIGR02427 protocat_pcaD 3-oxoa 98.4 3.2E-07 6.9E-12 62.5 4.0 46 20-65 63-108 (251)
41 TIGR03695 menH_SHCHC 2-succiny 98.4 7.4E-07 1.6E-11 60.4 5.7 45 26-73 60-104 (251)
42 TIGR01738 bioH putative pimelo 98.4 7.8E-07 1.7E-11 60.4 5.8 45 20-65 50-94 (245)
43 COG2267 PldB Lysophospholipase 98.4 7.3E-07 1.6E-11 65.5 5.9 61 14-78 86-146 (298)
44 PLN02578 hydrolase 98.4 8.7E-07 1.9E-11 65.9 6.0 47 25-74 141-187 (354)
45 cd00707 Pancreat_lipase_like P 98.4 5.4E-07 1.2E-11 65.4 4.8 52 20-74 94-147 (275)
46 PRK10985 putative hydrolase; P 98.4 1.4E-06 3E-11 64.1 6.7 56 19-75 114-169 (324)
47 TIGR03230 lipo_lipase lipoprot 98.3 9.5E-07 2.1E-11 68.2 5.6 52 20-74 101-154 (442)
48 COG2021 MET2 Homoserine acetyl 98.3 6.7E-07 1.5E-11 67.2 4.2 60 3-67 118-178 (368)
49 PF07819 PGAP1: PGAP1-like pro 98.3 2.1E-06 4.5E-11 60.8 6.3 53 22-74 66-123 (225)
50 PLN02211 methyl indole-3-aceta 98.3 2.4E-06 5.1E-11 61.6 5.9 45 25-72 75-120 (273)
51 PLN02511 hydrolase 98.2 4.6E-06 9.9E-11 63.1 7.4 54 19-73 156-209 (388)
52 TIGR01838 PHA_synth_I poly(R)- 98.2 1.4E-06 3.1E-11 68.6 4.7 63 12-77 238-305 (532)
53 PRK11071 esterase YqiA; Provis 98.2 3.3E-06 7.2E-11 58.1 6.0 50 20-75 45-94 (190)
54 PRK14875 acetoin dehydrogenase 98.2 3.9E-06 8.4E-11 61.8 6.3 51 21-74 182-232 (371)
55 TIGR01840 esterase_phb esteras 98.2 4.7E-06 1E-10 57.8 6.3 46 19-64 76-123 (212)
56 PLN02442 S-formylglutathione h 98.2 5.1E-06 1.1E-10 60.3 6.3 53 20-75 127-179 (283)
57 PLN03084 alpha/beta hydrolase 98.2 7.3E-06 1.6E-10 62.2 7.0 52 20-74 181-232 (383)
58 TIGR01607 PST-A Plasmodium sub 98.2 2.4E-06 5.1E-11 63.4 4.2 63 13-76 100-187 (332)
59 TIGR03100 hydr1_PEP hydrolase, 98.2 7.8E-06 1.7E-10 58.9 6.6 53 19-75 82-135 (274)
60 COG3243 PhaC Poly(3-hydroxyalk 98.1 2.1E-06 4.6E-11 65.7 3.3 71 2-75 148-219 (445)
61 KOG2382|consensus 98.1 2.5E-06 5.5E-11 63.2 3.5 60 12-73 100-160 (315)
62 KOG4178|consensus 98.1 5.9E-06 1.3E-10 61.4 4.8 49 17-65 94-142 (322)
63 COG0596 MhpC Predicted hydrola 98.0 1.3E-05 2.8E-10 53.6 5.5 48 23-73 75-122 (282)
64 KOG1455|consensus 98.0 2.4E-05 5.2E-10 57.8 7.1 81 19-102 110-197 (313)
65 PF06028 DUF915: Alpha/beta hy 98.0 1.8E-05 3.9E-10 57.2 6.3 53 22-74 89-144 (255)
66 PF01674 Lipase_2: Lipase (cla 98.0 1.1E-05 2.4E-10 57.1 4.7 36 20-56 60-95 (219)
67 cd00741 Lipase Lipase. Lipase 98.0 2.3E-05 5E-10 51.7 5.5 52 25-76 17-69 (153)
68 TIGR02821 fghA_ester_D S-formy 97.9 3.7E-05 8E-10 55.4 6.5 40 33-75 135-174 (275)
69 PF02450 LCAT: Lecithin:choles 97.9 1.4E-05 3E-10 60.7 4.3 54 20-74 104-160 (389)
70 PF12695 Abhydrolase_5: Alpha/ 97.9 5.5E-05 1.2E-09 48.3 6.4 49 20-72 44-93 (145)
71 PLN00021 chlorophyllase 97.9 2.7E-05 5.9E-10 57.7 5.4 43 34-76 124-168 (313)
72 PF00326 Peptidase_S9: Prolyl 97.9 2.3E-05 5E-10 54.0 4.6 57 19-78 45-103 (213)
73 PRK07868 acyl-CoA synthetase; 97.9 3.1E-05 6.7E-10 64.8 5.9 57 12-72 119-175 (994)
74 PLN02980 2-oxoglutarate decarb 97.9 3.1E-05 6.7E-10 67.9 6.0 49 21-72 1430-1478(1655)
75 KOG1552|consensus 97.8 3.5E-05 7.6E-10 55.7 5.0 54 19-77 112-166 (258)
76 PF05990 DUF900: Alpha/beta hy 97.8 2.5E-05 5.4E-10 55.6 4.2 59 19-77 76-140 (233)
77 PRK10566 esterase; Provisional 97.8 3.6E-05 7.8E-10 53.9 4.3 42 19-60 88-131 (249)
78 PRK05077 frsA fermentation/res 97.8 5.6E-05 1.2E-09 57.9 5.6 48 24-74 251-300 (414)
79 PF01764 Lipase_3: Lipase (cla 97.7 9E-05 1.9E-09 47.8 4.9 35 23-57 51-85 (140)
80 PF08538 DUF1749: Protein of u 97.7 0.00011 2.4E-09 54.4 5.7 63 19-81 87-155 (303)
81 PRK05855 short chain dehydroge 97.7 9.9E-05 2.1E-09 57.2 5.8 47 23-70 80-127 (582)
82 KOG2564|consensus 97.6 4.2E-05 9.2E-10 56.3 3.1 44 11-56 123-166 (343)
83 PF11288 DUF3089: Protein of u 97.6 0.0001 2.2E-09 51.9 4.8 56 16-72 74-134 (207)
84 PF10230 DUF2305: Uncharacteri 97.6 0.00015 3.2E-09 52.5 5.8 57 18-74 57-122 (266)
85 PF06057 VirJ: Bacterial virul 97.6 7.3E-05 1.6E-09 52.0 3.9 69 6-74 38-107 (192)
86 PF06821 Ser_hydrolase: Serine 97.6 0.00014 3.1E-09 49.5 5.4 55 19-75 36-92 (171)
87 COG4782 Uncharacterized protei 97.6 0.00011 2.3E-09 55.6 4.9 73 5-77 156-237 (377)
88 PRK11460 putative hydrolase; P 97.6 0.00018 4E-09 50.8 5.3 37 26-62 91-129 (232)
89 PF00151 Lipase: Lipase; Inte 97.6 0.00029 6.4E-09 52.7 6.6 54 21-75 133-188 (331)
90 cd00519 Lipase_3 Lipase (class 97.5 0.00018 3.8E-09 50.5 4.7 32 26-57 118-149 (229)
91 PF00975 Thioesterase: Thioest 97.5 0.0003 6.6E-09 48.5 5.7 52 20-71 46-101 (229)
92 PF07859 Abhydrolase_3: alpha/ 97.5 0.00011 2.3E-09 50.3 3.1 63 13-76 44-112 (211)
93 COG1075 LipA Predicted acetylt 97.5 0.00024 5.2E-09 53.1 5.1 56 22-78 113-168 (336)
94 PF00756 Esterase: Putative es 97.4 0.00026 5.5E-09 49.7 4.4 33 38-73 117-149 (251)
95 KOG1838|consensus 97.3 0.00075 1.6E-08 51.8 6.4 58 19-76 181-238 (409)
96 PF10503 Esterase_phd: Esteras 97.3 0.00081 1.8E-08 47.7 5.8 45 20-64 79-125 (220)
97 PF08840 BAAT_C: BAAT / Acyl-C 97.2 0.0009 1.9E-08 46.9 5.3 52 22-77 6-59 (213)
98 COG0400 Predicted esterase [Ge 97.2 0.00061 1.3E-08 47.9 4.4 50 23-75 84-135 (207)
99 TIGR00976 /NonD putative hydro 97.2 0.0011 2.3E-08 52.4 6.1 53 19-74 79-132 (550)
100 COG3208 GrsT Predicted thioest 97.2 0.00092 2E-08 48.1 5.2 45 14-58 48-96 (244)
101 PF06342 DUF1057: Alpha/beta h 97.2 0.0019 4.1E-08 47.6 6.8 55 19-78 86-141 (297)
102 PLN00413 triacylglycerol lipas 97.0 0.0011 2.3E-08 51.8 4.5 38 18-55 266-303 (479)
103 PLN02517 phosphatidylcholine-s 97.0 0.0008 1.7E-08 53.9 3.8 54 20-73 197-262 (642)
104 COG1647 Esterase/lipase [Gener 97.0 0.0016 3.4E-08 46.5 4.7 40 33-77 82-121 (243)
105 PF05728 UPF0227: Uncharacteri 97.0 0.0024 5.1E-08 44.2 5.5 48 25-78 48-95 (187)
106 PF01083 Cutinase: Cutinase; 97.0 0.0019 4.2E-08 44.2 5.0 56 20-75 65-123 (179)
107 PLN02162 triacylglycerol lipas 97.0 0.0012 2.5E-08 51.6 4.2 36 20-55 262-297 (475)
108 PF02230 Abhydrolase_2: Phosph 97.0 0.0021 4.5E-08 44.6 5.2 36 34-72 103-138 (216)
109 PF11187 DUF2974: Protein of u 96.9 0.0023 5E-08 45.4 5.4 40 37-76 85-125 (224)
110 COG0627 Predicted esterase [Ge 96.9 0.00059 1.3E-08 50.8 2.4 63 12-77 127-190 (316)
111 PRK10162 acetyl esterase; Prov 96.9 0.0014 3.1E-08 48.3 4.3 58 19-76 132-197 (318)
112 COG4814 Uncharacterized protei 96.9 0.0012 2.7E-08 47.9 3.7 37 22-58 122-158 (288)
113 PF05057 DUF676: Putative seri 96.9 0.0019 4.1E-08 45.3 4.4 20 36-55 78-97 (217)
114 COG4757 Predicted alpha/beta h 96.8 0.00077 1.7E-08 48.6 2.2 48 10-58 79-126 (281)
115 PF07224 Chlorophyllase: Chlor 96.8 0.0017 3.7E-08 47.5 3.9 57 20-77 94-160 (307)
116 PLN02454 triacylglycerol lipas 96.8 0.0027 5.7E-08 49.0 5.0 36 21-56 211-248 (414)
117 smart00824 PKS_TE Thioesterase 96.8 0.005 1.1E-07 41.0 5.9 43 29-71 57-99 (212)
118 PF03096 Ndr: Ndr family; Int 96.8 0.0038 8.2E-08 45.9 5.5 54 19-75 82-135 (283)
119 KOG3724|consensus 96.7 0.0023 5.1E-08 52.7 4.6 35 37-71 183-217 (973)
120 TIGR01849 PHB_depoly_PhaZ poly 96.7 0.0033 7.2E-08 48.4 5.3 50 29-79 162-213 (406)
121 PLN02934 triacylglycerol lipas 96.7 0.0022 4.8E-08 50.5 4.1 37 19-55 304-340 (515)
122 KOG2369|consensus 96.6 0.0028 6.1E-08 49.4 4.2 40 20-59 166-205 (473)
123 PLN02571 triacylglycerol lipas 96.6 0.0048 1E-07 47.6 5.5 35 22-56 210-246 (413)
124 COG3319 Thioesterase domains o 96.6 0.0043 9.3E-08 45.0 4.8 48 26-73 55-102 (257)
125 KOG3101|consensus 96.6 0.00013 2.8E-09 51.9 -3.1 41 35-78 140-180 (283)
126 KOG2931|consensus 96.6 0.0059 1.3E-07 45.3 5.3 53 19-74 105-157 (326)
127 COG0429 Predicted hydrolase of 96.5 0.0084 1.8E-07 45.1 5.8 60 15-74 127-186 (345)
128 PLN02847 triacylglycerol lipas 96.5 0.0047 1E-07 49.6 4.6 42 34-77 249-293 (633)
129 COG0412 Dienelactone hydrolase 96.4 0.0074 1.6E-07 43.0 5.1 51 18-72 92-144 (236)
130 KOG2984|consensus 96.4 0.00055 1.2E-08 48.6 -0.7 50 29-81 107-156 (277)
131 PF01738 DLH: Dienelactone hyd 96.4 0.0051 1.1E-07 42.5 3.9 50 19-72 79-130 (218)
132 COG2819 Predicted hydrolase of 96.3 0.0045 9.7E-08 45.1 3.4 43 33-78 134-176 (264)
133 PF12740 Chlorophyllase2: Chlo 96.3 0.0042 9.2E-08 45.1 3.3 56 19-74 64-131 (259)
134 COG3545 Predicted esterase of 96.3 0.012 2.7E-07 40.5 5.3 54 19-75 40-95 (181)
135 KOG4840|consensus 96.2 0.0023 5E-08 46.0 1.5 65 11-77 83-147 (299)
136 PLN02408 phospholipase A1 96.2 0.0076 1.6E-07 45.8 4.3 32 25-56 187-220 (365)
137 PRK10439 enterobactin/ferric e 96.1 0.0083 1.8E-07 46.1 4.1 37 34-73 286-322 (411)
138 PRK10252 entF enterobactin syn 96.0 0.014 3.1E-07 49.7 5.3 53 20-72 1113-1169(1296)
139 PLN02324 triacylglycerol lipas 95.9 0.016 3.5E-07 44.7 4.8 33 24-56 201-235 (415)
140 PF03959 FSH1: Serine hydrolas 95.9 0.011 2.4E-07 41.2 3.6 66 9-74 73-145 (212)
141 PF03403 PAF-AH_p_II: Platelet 95.8 0.0096 2.1E-07 45.3 3.4 36 35-74 227-262 (379)
142 KOG4569|consensus 95.8 0.016 3.4E-07 43.5 4.4 37 20-56 155-191 (336)
143 PF05448 AXE1: Acetyl xylan es 95.7 0.019 4.2E-07 42.7 4.6 49 20-72 157-207 (320)
144 PLN02310 triacylglycerol lipas 95.7 0.019 4.1E-07 44.2 4.6 21 36-56 209-229 (405)
145 PF06259 Abhydrolase_8: Alpha/ 95.7 0.03 6.6E-07 38.5 5.0 45 20-64 92-137 (177)
146 PF06500 DUF1100: Alpha/beta h 95.6 0.034 7.4E-07 42.9 5.5 51 22-75 245-297 (411)
147 COG2945 Predicted hydrolase of 95.6 0.031 6.8E-07 39.2 4.7 42 19-60 85-127 (210)
148 COG3509 LpqC Poly(3-hydroxybut 95.5 0.059 1.3E-06 40.0 6.4 47 19-65 125-173 (312)
149 TIGR03502 lipase_Pla1_cef extr 95.5 0.017 3.7E-07 47.9 3.9 22 35-56 554-575 (792)
150 PF12715 Abhydrolase_7: Abhydr 95.5 0.012 2.6E-07 45.0 2.8 40 19-58 207-248 (390)
151 PLN02753 triacylglycerol lipas 95.5 0.022 4.8E-07 45.2 4.3 20 36-55 312-331 (531)
152 PLN02802 triacylglycerol lipas 95.5 0.022 4.8E-07 45.0 4.3 20 37-56 331-350 (509)
153 PLN02719 triacylglycerol lipas 95.4 0.025 5.3E-07 44.8 4.2 20 37-56 299-318 (518)
154 PLN02761 lipase class 3 family 95.4 0.028 6E-07 44.6 4.4 19 37-55 295-313 (527)
155 PLN03037 lipase class 3 family 95.3 0.018 3.9E-07 45.6 3.2 21 36-56 318-338 (525)
156 PF05677 DUF818: Chlamydia CHL 95.2 0.077 1.7E-06 40.2 6.2 43 15-58 192-237 (365)
157 PRK04940 hypothetical protein; 95.2 0.057 1.2E-06 37.3 5.2 37 36-78 60-96 (180)
158 COG0657 Aes Esterase/lipase [L 95.1 0.033 7.3E-07 40.6 4.0 60 19-78 130-195 (312)
159 KOG4667|consensus 95.1 0.048 1E-06 39.2 4.5 39 20-59 90-128 (269)
160 PF09752 DUF2048: Uncharacteri 94.8 0.061 1.3E-06 40.7 4.6 36 24-60 164-199 (348)
161 PF05277 DUF726: Protein of un 94.7 0.055 1.2E-06 40.9 4.4 39 33-71 217-257 (345)
162 PF11339 DUF3141: Protein of u 94.5 0.096 2.1E-06 41.8 5.3 58 24-83 127-187 (581)
163 PF10340 DUF2424: Protein of u 94.4 0.1 2.2E-06 39.9 5.1 57 21-77 180-238 (374)
164 PF11144 DUF2920: Protein of u 94.3 0.072 1.6E-06 41.0 4.2 59 4-64 150-212 (403)
165 PRK05371 x-prolyl-dipeptidyl a 94.3 0.16 3.4E-06 42.2 6.4 53 18-73 304-372 (767)
166 PF02089 Palm_thioest: Palmito 94.2 0.11 2.3E-06 38.3 4.7 48 22-71 61-113 (279)
167 PLN02633 palmitoyl protein thi 94.1 0.19 4.2E-06 37.5 5.9 51 20-71 73-128 (314)
168 KOG3847|consensus 94.1 0.021 4.6E-07 43.0 0.9 50 27-77 232-282 (399)
169 PLN02606 palmitoyl-protein thi 93.9 0.25 5.4E-06 36.9 6.1 51 20-71 74-129 (306)
170 PF12048 DUF3530: Protein of u 93.8 0.24 5.1E-06 36.8 6.1 42 33-76 190-231 (310)
171 PRK10115 protease 2; Provision 93.7 0.14 3E-06 41.9 5.1 56 19-77 505-562 (686)
172 COG1506 DAP2 Dipeptidyl aminop 93.5 0.15 3.4E-06 41.0 4.9 41 19-59 454-496 (620)
173 KOG1553|consensus 93.3 0.19 4E-06 38.6 4.7 40 21-60 294-335 (517)
174 PF05577 Peptidase_S28: Serine 93.3 0.3 6.4E-06 37.4 6.0 56 18-76 92-150 (434)
175 KOG4391|consensus 93.1 0.023 5E-07 40.9 -0.3 45 19-63 130-176 (300)
176 COG3571 Predicted hydrolase of 92.9 0.2 4.2E-06 34.7 4.0 44 26-72 79-122 (213)
177 COG3946 VirJ Type IV secretory 92.6 0.17 3.6E-06 39.3 3.7 54 5-58 295-348 (456)
178 PF03583 LIP: Secretory lipase 92.6 0.27 5.9E-06 36.0 4.8 41 36-76 71-115 (290)
179 PF00135 COesterase: Carboxyle 92.5 0.33 7.1E-06 37.4 5.2 55 17-72 184-243 (535)
180 PF02129 Peptidase_S15: X-Pro 92.4 0.41 8.8E-06 34.3 5.3 52 19-74 83-136 (272)
181 COG4188 Predicted dienelactone 92.2 0.22 4.8E-06 38.0 3.9 41 19-59 133-182 (365)
182 cd00312 Esterase_lipase Estera 92.1 0.15 3.2E-06 39.4 3.0 39 18-56 153-196 (493)
183 KOG2100|consensus 92.1 0.25 5.5E-06 40.9 4.4 61 19-81 589-651 (755)
184 COG5153 CVT17 Putative lipase 91.8 0.24 5.2E-06 37.2 3.5 30 28-57 268-297 (425)
185 KOG4540|consensus 91.8 0.24 5.2E-06 37.2 3.5 30 28-57 268-297 (425)
186 KOG3975|consensus 91.7 0.74 1.6E-05 33.8 5.9 54 20-74 89-147 (301)
187 COG2382 Fes Enterochelin ester 91.5 0.15 3.2E-06 37.9 2.2 38 37-77 178-215 (299)
188 PTZ00472 serine carboxypeptida 91.5 0.32 6.9E-06 38.0 4.2 37 20-56 152-191 (462)
189 KOG4627|consensus 91.2 0.13 2.9E-06 36.7 1.7 53 23-77 122-175 (270)
190 COG1770 PtrB Protease II [Amin 90.9 0.35 7.7E-06 39.5 4.0 47 20-66 509-557 (682)
191 KOG2183|consensus 89.3 0.33 7.1E-06 37.9 2.5 62 16-79 145-208 (492)
192 PF08237 PE-PPE: PE-PPE domain 88.9 1.2 2.6E-05 31.7 5.0 22 35-56 47-68 (225)
193 KOG1515|consensus 88.8 1.3 2.7E-05 33.5 5.4 64 19-82 143-215 (336)
194 COG4099 Predicted peptidase [G 86.7 1.2 2.7E-05 33.5 4.1 30 34-63 267-296 (387)
195 PF07082 DUF1350: Protein of u 86.4 0.78 1.7E-05 33.3 2.8 23 37-59 91-113 (250)
196 COG3458 Acetyl esterase (deace 85.5 0.54 1.2E-05 34.9 1.7 39 21-59 159-199 (321)
197 KOG2541|consensus 85.5 3 6.4E-05 30.9 5.5 34 36-71 92-125 (296)
198 COG2272 PnbA Carboxylesterase 85.5 1.2 2.6E-05 35.3 3.7 78 17-95 156-240 (491)
199 PF07519 Tannase: Tannase and 84.4 1.6 3.6E-05 34.3 4.1 41 35-78 114-154 (474)
200 COG4947 Uncharacterized protei 82.2 1.6 3.5E-05 30.5 2.8 45 24-68 89-133 (227)
201 KOG3967|consensus 82.1 2.5 5.4E-05 30.6 3.8 50 33-83 187-237 (297)
202 KOG2029|consensus 80.9 1.5 3.2E-05 35.8 2.6 20 35-54 525-544 (697)
203 KOG2281|consensus 80.8 2.8 6.2E-05 34.7 4.2 64 16-82 701-770 (867)
204 KOG2237|consensus 79.9 1.5 3.3E-05 35.9 2.4 47 19-65 530-578 (712)
205 KOG1516|consensus 79.8 3.3 7.2E-05 32.5 4.3 39 18-56 172-215 (545)
206 KOG3043|consensus 78.9 0.5 1.1E-05 34.0 -0.5 43 17-59 101-143 (242)
207 KOG4372|consensus 77.6 1.2 2.5E-05 34.5 1.1 21 34-54 148-168 (405)
208 smart00827 PKS_AT Acyl transfe 77.4 4.3 9.4E-05 29.1 4.0 27 29-55 75-101 (298)
209 KOG2385|consensus 75.4 4.6 0.0001 32.6 3.8 23 33-55 444-466 (633)
210 COG3150 Predicted esterase [Ge 75.2 7 0.00015 27.1 4.2 52 21-78 44-95 (191)
211 TIGR03131 malonate_mdcH malona 74.9 7.1 0.00015 28.2 4.6 28 29-56 69-96 (295)
212 TIGR03712 acc_sec_asp2 accesso 74.7 4.6 9.9E-05 32.2 3.7 56 20-81 339-397 (511)
213 TIGR00128 fabD malonyl CoA-acy 74.2 5.5 0.00012 28.4 3.8 27 30-56 76-103 (290)
214 PF03283 PAE: Pectinacetyleste 73.4 7.5 0.00016 29.6 4.5 41 15-55 133-175 (361)
215 PF00698 Acyl_transf_1: Acyl t 73.3 3.4 7.3E-05 30.3 2.6 28 29-56 77-104 (318)
216 PF04301 DUF452: Protein of un 71.6 13 0.00028 26.4 5.0 25 33-57 54-78 (213)
217 KOG2112|consensus 70.8 6.7 0.00015 27.7 3.4 27 35-61 92-118 (206)
218 cd00382 beta_CA Carbonic anhyd 70.2 8.6 0.00019 24.4 3.7 30 21-50 44-73 (119)
219 KOG2565|consensus 67.6 11 0.00024 29.4 4.3 42 22-63 215-256 (469)
220 cd00883 beta_CA_cladeA Carboni 62.5 13 0.00027 25.5 3.5 34 21-54 66-99 (182)
221 KOG2551|consensus 61.9 8.9 0.00019 27.6 2.7 32 24-55 90-123 (230)
222 PF02273 Acyl_transf_2: Acyl t 61.7 10 0.00022 28.0 3.0 46 9-56 76-121 (294)
223 TIGR02816 pfaB_fam PfaB family 61.6 14 0.00031 29.8 4.0 27 31-57 260-286 (538)
224 PF00091 Tubulin: Tubulin/FtsZ 58.5 5.6 0.00012 27.7 1.2 34 21-54 106-142 (216)
225 KOG1551|consensus 57.3 7.4 0.00016 29.1 1.7 28 33-60 192-219 (371)
226 COG0331 FabD (acyl-carrier-pro 57.2 17 0.00036 27.2 3.6 22 34-55 83-104 (310)
227 PF14253 AbiH: Bacteriophage a 55.0 10 0.00022 26.9 2.1 18 34-51 233-250 (270)
228 cd03379 beta_CA_cladeD Carboni 54.7 26 0.00057 22.9 3.9 30 21-50 41-70 (142)
229 PLN00416 carbonate dehydratase 54.1 21 0.00046 26.0 3.6 34 21-54 125-158 (258)
230 cd00884 beta_CA_cladeB Carboni 53.2 22 0.00047 24.6 3.4 33 22-54 73-105 (190)
231 cd07225 Pat_PNPLA6_PNPLA7 Pata 52.7 31 0.00067 25.6 4.4 29 30-58 37-65 (306)
232 PRK10279 hypothetical protein; 51.0 30 0.00066 25.6 4.1 29 30-58 27-55 (300)
233 PLN03006 carbonate dehydratase 50.2 23 0.0005 26.5 3.3 32 22-53 158-189 (301)
234 KOG3253|consensus 49.6 6 0.00013 32.6 0.2 36 34-71 248-283 (784)
235 PRK15219 carbonic anhydrase; P 48.9 30 0.00064 25.0 3.7 35 20-54 127-161 (245)
236 PLN03014 carbonic anhydrase 48.5 25 0.00054 26.8 3.3 34 21-54 205-238 (347)
237 cd07198 Patatin Patatin-like p 48.0 42 0.00091 22.2 4.1 34 25-59 16-49 (172)
238 PF10081 Abhydrolase_9: Alpha/ 47.3 26 0.00057 26.1 3.2 41 35-75 108-148 (289)
239 cd07227 Pat_Fungal_NTE1 Fungal 47.1 40 0.00086 24.6 4.1 28 30-57 32-59 (269)
240 PLN03019 carbonic anhydrase 47.0 26 0.00056 26.6 3.2 34 21-54 200-233 (330)
241 COG1752 RssA Predicted esteras 46.3 41 0.0009 24.6 4.2 29 29-57 32-60 (306)
242 PLN02154 carbonic anhydrase 46.3 33 0.00072 25.6 3.6 34 21-54 151-184 (290)
243 PF00484 Pro_CA: Carbonic anhy 46.2 50 0.0011 21.4 4.2 35 20-54 39-73 (153)
244 cd07212 Pat_PNPLA9 Patatin-lik 45.2 58 0.0013 24.2 4.8 34 25-58 17-54 (312)
245 KOG2182|consensus 44.9 35 0.00076 27.4 3.8 43 18-60 151-196 (514)
246 PRK10437 carbonic anhydrase; P 44.2 39 0.00085 24.0 3.7 34 21-54 76-109 (220)
247 COG4667 Predicted esterase of 43.3 46 0.00099 24.8 3.9 43 23-65 27-69 (292)
248 cd06059 Tubulin The tubulin su 42.8 20 0.00043 27.3 2.1 46 5-50 55-103 (382)
249 cd03378 beta_CA_cladeC Carboni 42.3 53 0.0011 22.0 3.9 31 21-51 77-107 (154)
250 cd07207 Pat_ExoU_VipD_like Exo 40.8 68 0.0015 21.4 4.3 33 25-58 17-49 (194)
251 cd07209 Pat_hypo_Ecoli_Z1214_l 40.7 63 0.0014 22.3 4.3 32 26-58 17-48 (215)
252 COG0288 CynT Carbonic anhydras 39.7 36 0.00078 23.9 2.9 36 20-55 76-111 (207)
253 cd07210 Pat_hypo_W_succinogene 38.1 84 0.0018 22.0 4.6 33 25-58 18-50 (221)
254 PF01872 RibD_C: RibD C-termin 37.0 1.2E+02 0.0025 20.5 5.1 49 21-77 122-170 (200)
255 PLN02752 [acyl-carrier protein 36.1 31 0.00067 25.6 2.2 17 39-55 127-143 (343)
256 cd07230 Pat_TGL4-5_like Triacy 34.5 53 0.0011 25.6 3.3 28 33-60 98-125 (421)
257 PLN00220 tubulin beta chain; P 34.4 63 0.0014 25.3 3.7 40 10-49 101-143 (447)
258 PTZ00387 epsilon tubulin; Prov 33.9 67 0.0014 25.4 3.8 42 9-50 101-145 (465)
259 cd02186 alpha_tubulin The tubu 33.9 59 0.0013 25.4 3.5 43 7-49 99-144 (434)
260 smart00864 Tubulin Tubulin/Fts 33.8 39 0.00085 23.0 2.3 27 25-51 72-98 (192)
261 cd07232 Pat_PLPL Patain-like p 32.9 57 0.0012 25.3 3.2 35 26-61 86-120 (407)
262 PRK08671 methionine aminopepti 32.2 26 0.00056 25.6 1.2 29 19-47 127-156 (291)
263 cd01088 MetAP2 Methionine Amin 32.2 26 0.00057 25.6 1.3 29 19-47 126-155 (291)
264 cd01086 MetAP1 Methionine Amin 32.1 33 0.00071 23.8 1.7 31 19-49 134-165 (238)
265 cd07228 Pat_NTE_like_bacteria 30.7 1.3E+02 0.0028 19.9 4.4 34 25-59 18-51 (175)
266 COG1505 Serine proteases of th 30.1 8.1 0.00018 31.7 -1.8 55 19-76 481-537 (648)
267 cd07224 Pat_like Patatin-like 29.3 1.3E+02 0.0028 21.2 4.4 33 25-58 17-51 (233)
268 cd07208 Pat_hypo_Ecoli_yjju_li 29.1 1.3E+02 0.0028 21.3 4.4 35 25-60 16-51 (266)
269 KOG1578|consensus 29.0 33 0.00072 25.3 1.3 33 22-54 140-172 (276)
270 cd07231 Pat_SDP1-like Sugar-De 27.0 87 0.0019 23.7 3.3 26 33-58 93-118 (323)
271 TIGR00501 met_pdase_II methion 26.8 35 0.00076 25.0 1.1 28 19-46 130-158 (295)
272 PRK07281 methionine aminopepti 26.4 54 0.0012 24.1 2.1 28 19-46 174-202 (286)
273 cd07229 Pat_TGL3_like Triacylg 26.1 93 0.002 24.2 3.3 28 33-60 108-135 (391)
274 PF00450 Peptidase_S10: Serine 24.2 1.4E+02 0.0031 22.2 4.0 57 20-76 117-183 (415)
275 PF12242 Eno-Rase_NADH_b: NAD( 24.1 1.6E+02 0.0036 17.6 3.5 38 20-57 21-61 (78)
276 PRK12318 methionine aminopepti 24.1 46 0.00099 24.4 1.3 28 19-46 184-212 (291)
277 PRK13018 cell division protein 23.8 70 0.0015 24.7 2.3 31 24-54 101-131 (378)
278 TIGR00065 ftsZ cell division p 23.8 90 0.002 23.7 2.9 29 25-53 91-119 (349)
279 KOG1202|consensus 23.7 1.3E+02 0.0028 27.7 4.0 32 29-60 2175-2206(2376)
280 cd02190 epsilon_tubulin The tu 23.6 1.2E+02 0.0027 23.1 3.6 14 37-50 100-113 (379)
281 cd07204 Pat_PNPLA_like Patatin 23.3 1.9E+02 0.0042 20.4 4.4 20 39-58 34-53 (243)
282 COG3887 Predicted signaling pr 23.3 1.4E+02 0.003 24.8 3.9 34 23-58 327-366 (655)
283 cd02201 FtsZ_type1 FtsZ is a G 22.5 99 0.0021 22.7 2.8 28 25-52 74-101 (304)
284 COG2453 CDC14 Predicted protei 22.4 87 0.0019 21.1 2.4 36 20-56 89-129 (180)
285 cd02189 delta_tubulin The tubu 22.2 1.2E+02 0.0025 23.8 3.3 41 10-50 97-140 (446)
286 PRK12896 methionine aminopepti 21.9 52 0.0011 23.0 1.2 31 19-49 149-180 (255)
287 TIGR02813 omega_3_PfaA polyket 21.8 1.5E+02 0.0032 28.9 4.2 27 29-55 667-693 (2582)
288 cd07206 Pat_TGL3-4-5_SDP1 Tria 21.7 1.9E+02 0.0041 21.6 4.2 24 33-56 94-117 (298)
289 PRK05716 methionine aminopepti 21.5 62 0.0014 22.6 1.6 30 19-48 144-174 (252)
290 cd01714 ETF_beta The electron 21.3 1.4E+02 0.0031 20.5 3.3 33 23-56 97-133 (202)
291 PRK12897 methionine aminopepti 21.1 87 0.0019 22.1 2.2 31 19-49 143-174 (248)
292 TIGR00500 met_pdase_I methioni 20.5 55 0.0012 22.9 1.1 31 19-49 142-173 (247)
293 PF05705 DUF829: Eukaryotic pr 20.4 3E+02 0.0065 18.9 5.4 37 37-73 68-111 (240)
294 COG2936 Predicted acyl esteras 20.4 2.7E+02 0.0058 22.9 5.0 41 20-60 107-148 (563)
295 PTZ00335 tubulin alpha chain; 20.2 2.8E+02 0.0061 21.8 5.0 42 8-49 101-145 (448)
296 PF13289 SIR2_2: SIR2-like dom 20.2 1.4E+02 0.0029 18.5 2.8 22 27-48 78-99 (143)
No 1
>KOG2624|consensus
Probab=99.86 E-value=1.7e-22 Score=152.79 Aligned_cols=99 Identities=36% Similarity=0.489 Sum_probs=91.7
Q ss_pred ccccccccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccccchhhH-
Q psy17377 6 ETYMILVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMHMKYM- 84 (106)
Q Consensus 6 ~~~~w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~~~~~~~- 84 (106)
+++||+|||||++.||+||+|+++++.++.+++++||||+|+++.+..++.+|+..+||+.++++||+++.++.++++.
T Consensus 131 ~~~FW~FS~~Em~~yDLPA~IdyIL~~T~~~kl~yvGHSQGtt~~fv~lS~~p~~~~kI~~~~aLAP~~~~k~~~~~~~~ 210 (403)
T KOG2624|consen 131 DKEFWDFSWHEMGTYDLPAMIDYILEKTGQEKLHYVGHSQGTTTFFVMLSERPEYNKKIKSFIALAPAAFPKHIKSLLNK 210 (403)
T ss_pred CcceeecchhhhhhcCHHHHHHHHHHhccccceEEEEEEccchhheehhcccchhhhhhheeeeecchhhhcccccHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999999999999999998888762
Q ss_pred --------HHHHHHhcCccceecCCccc
Q psy17377 85 --------IDVFYSLFVVSDVAFQSNFQ 104 (106)
Q Consensus 85 --------~~~~~~~~~~~~~~~~~~~~ 104 (106)
...+..++|..||+|++.++
T Consensus 211 ~~~~~~~~~~~~~~~fg~~~f~p~~~~~ 238 (403)
T KOG2624|consen 211 FLDPFLGAFSLLPLLFGRKEFLPSNLFI 238 (403)
T ss_pred hhhhhhhhhhHHHHhcCCccccchhhHH
Confidence 23688999999999998754
No 2
>PLN02872 triacylglycerol lipase
Probab=99.71 E-value=4e-18 Score=129.08 Aligned_cols=98 Identities=22% Similarity=0.402 Sum_probs=84.5
Q ss_pred CccccccccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccccchhhH
Q psy17377 5 YETYMILVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMHMKYM 84 (106)
Q Consensus 5 ~~~~~w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~~~~~~~ 84 (106)
.+++||+|++++++.+|++++++++++.++ +++++|||||||.+++.++ .+|++.++++.+++++|+++..+..+++.
T Consensus 130 ~~~~fw~~s~~e~a~~Dl~a~id~i~~~~~-~~v~~VGhS~Gg~~~~~~~-~~p~~~~~v~~~~~l~P~~~~~~~~~~~~ 207 (395)
T PLN02872 130 KDKEFWDWSWQELALYDLAEMIHYVYSITN-SKIFIVGHSQGTIMSLAAL-TQPNVVEMVEAAALLCPISYLDHVTAPLV 207 (395)
T ss_pred cchhccCCcHHHHHHHHHHHHHHHHHhccC-CceEEEEECHHHHHHHHHh-hChHHHHHHHHHHHhcchhhhccCCCHHH
Confidence 467899999999999999999999988665 7999999999999998555 68998889999999999999999888873
Q ss_pred -------HHHHHHhcCccceecCCccc
Q psy17377 85 -------IDVFYSLFVVSDVAFQSNFQ 104 (106)
Q Consensus 85 -------~~~~~~~~~~~~~~~~~~~~ 104 (106)
...+...+|..||+|.+..+
T Consensus 208 ~~~~~~~~~~~~~~~g~~~~~~~~~~~ 234 (395)
T PLN02872 208 LRMVFMHLDQMVVAMGIHQLNFRSDVL 234 (395)
T ss_pred HHHHHHhHHHHHHHhcCceecCCcHHH
Confidence 33466679999999987643
No 3
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=99.28 E-value=1.7e-11 Score=83.60 Aligned_cols=61 Identities=25% Similarity=0.263 Sum_probs=54.2
Q ss_pred ccccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 10 ILVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 10 w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
|...++++...|+++.++.++++++.++++++||||||.+++.+++.+|++++ .+++++|+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~vG~S~Gg~~~~~~a~~~p~~v~---~lvl~~~~ 78 (230)
T PF00561_consen 18 WDPDFPDYTTDDLAADLEALREALGIKKINLVGHSMGGMLALEYAAQYPERVK---KLVLISPP 78 (230)
T ss_dssp CGSGSCTHCHHHHHHHHHHHHHHHTTSSEEEEEETHHHHHHHHHHHHSGGGEE---EEEEESES
T ss_pred ccCCcccccHHHHHHHHHHHHHHhCCCCeEEEEECCChHHHHHHHHHCchhhc---CcEEEeee
Confidence 77888899999999999999999999999999999999999999999999644 44566664
No 4
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=98.85 E-value=8e-09 Score=74.26 Aligned_cols=50 Identities=16% Similarity=0.068 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
|+...+..+++..+.++++++||||||.+++.++.++|++ +..+++++|.
T Consensus 87 ~~a~~l~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~p~~---v~~lili~~~ 136 (294)
T PLN02824 87 TWGEQLNDFCSDVVGDPAFVICNSVGGVVGLQAAVDAPEL---VRGVMLINIS 136 (294)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEeCHHHHHHHHHHHhChhh---eeEEEEECCC
Confidence 3345555566667889999999999999999999999986 4455666654
No 5
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=98.80 E-value=8.2e-09 Score=76.59 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=51.8
Q ss_pred ccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccc
Q psy17377 12 VKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78 (106)
Q Consensus 12 ~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~ 78 (106)
++++++...|++++++++++..+.++++++||||||.+++.+++.+|+. +..+++++|......
T Consensus 112 ~~~~d~~~~~~~~~v~~l~~~~~~~~i~lvGhS~GG~i~~~~~~~~~~~---v~~lv~~~~p~~~~~ 175 (350)
T TIGR01836 112 LTLDDYINGYIDKCVDYICRTSKLDQISLLGICQGGTFSLCYAALYPDK---IKNLVTMVTPVDFET 175 (350)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCcccEEEECHHHHHHHHHHHhCchh---eeeEEEeccccccCC
Confidence 3555665567899999999999999999999999999999999998875 556677777665443
No 6
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=98.80 E-value=1.1e-08 Score=75.82 Aligned_cols=54 Identities=26% Similarity=0.314 Sum_probs=42.6
Q ss_pred cccccHHHHHHHHHHHhCCCc-EEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 17 IGIYDTTATIDYVLNVTGKKK-VITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 17 ~~~~Dl~~~i~~v~~~~~~~~-~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
+...|+.+.+..++++++.++ ++++||||||.+++.++..+|++++++ +++++.
T Consensus 107 ~~~~~~~~~~~~~~~~l~~~~~~~l~G~S~Gg~ia~~~a~~~p~~v~~l---vl~~~~ 161 (351)
T TIGR01392 107 ITIRDDVKAQKLLLDHLGIEQIAAVVGGSMGGMQALEWAIDYPERVRAI---VVLATS 161 (351)
T ss_pred CcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheE---EEEccC
Confidence 334566677777788899998 999999999999999999999875555 455443
No 7
>PRK06765 homoserine O-acetyltransferase; Provisional
Probab=98.76 E-value=1.7e-08 Score=76.55 Aligned_cols=58 Identities=16% Similarity=0.161 Sum_probs=46.7
Q ss_pred ccccccccccccHHHHHHHHHHHhCCCcEE-EEEeChHHHHHHHHHHcCcccccccceE
Q psy17377 10 ILVKFHEIGIYDTTATIDYVLNVTGKKKVI-TIGHSMGTTNVLVAGSLRPEYQSKISLS 67 (106)
Q Consensus 10 w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~-lvGHSmGg~i~l~~~~~~p~~~~~v~~~ 67 (106)
|.-.+..+...|+.+.+..++++++++++. ++||||||++++.++.++|+++++++.+
T Consensus 134 ~~~~fP~~t~~d~~~~~~~ll~~lgi~~~~~vvG~SmGG~ial~~a~~~P~~v~~lv~i 192 (389)
T PRK06765 134 YGMDFPVVTILDFVRVQKELIKSLGIARLHAVMGPSMGGMQAQEWAVHYPHMVERMIGV 192 (389)
T ss_pred cCCCCCcCcHHHHHHHHHHHHHHcCCCCceEEEEECHHHHHHHHHHHHChHhhheEEEE
Confidence 333455555667778888888999999997 9999999999999999999987776543
No 8
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=98.75 E-value=4.5e-08 Score=65.48 Aligned_cols=54 Identities=30% Similarity=0.374 Sum_probs=43.4
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhc
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFL 76 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~ 76 (106)
.+..+.+..++++.+.++++++|||+||.+++.++..+|++ +..+++++|....
T Consensus 50 ~~~~~~l~~~l~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~---v~~~vl~~~~~~~ 103 (228)
T PF12697_consen 50 EDYAEDLAELLDALGIKKVILVGHSMGGMIALRLAARYPDR---VKGLVLLSPPPPL 103 (228)
T ss_dssp HHHHHHHHHHHHHTTTSSEEEEEETHHHHHHHHHHHHSGGG---EEEEEEESESSSH
T ss_pred hhhhhhhhhcccccccccccccccccccccccccccccccc---cccceeecccccc
Confidence 34446666677888889999999999999999999999985 5566788877643
No 9
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=98.75 E-value=1.7e-08 Score=72.09 Aligned_cols=52 Identities=25% Similarity=0.096 Sum_probs=41.5
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
.++.+.++.+++.++.++++++||||||.+++.++..+|++ +..+++++|..
T Consensus 75 ~~~~~~~~~~i~~l~~~~~~LvG~S~GG~va~~~a~~~p~~---v~~lvl~~~~~ 126 (276)
T TIGR02240 75 PGLAKLAARMLDYLDYGQVNAIGVSWGGALAQQFAHDYPER---CKKLILAATAA 126 (276)
T ss_pred HHHHHHHHHHHHHhCcCceEEEEECHHHHHHHHHHHHCHHH---hhheEEeccCC
Confidence 44556666677888889999999999999999999999986 44556666654
No 10
>PRK07581 hypothetical protein; Validated
Probab=98.74 E-value=3.1e-08 Score=72.82 Aligned_cols=47 Identities=15% Similarity=0.238 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHhCCCcE-EEEEeChHHHHHHHHHHcCcccccccceE
Q psy17377 21 DTTATIDYVLNVTGKKKV-ITIGHSMGTTNVLVAGSLRPEYQSKISLS 67 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~-~lvGHSmGg~i~l~~~~~~p~~~~~v~~~ 67 (106)
|+.+....+++.++.+++ ++|||||||.+++.+++++|+++++++.+
T Consensus 108 ~~~~~~~~l~~~lgi~~~~~lvG~S~GG~va~~~a~~~P~~V~~Lvli 155 (339)
T PRK07581 108 NVRAQHRLLTEKFGIERLALVVGWSMGAQQTYHWAVRYPDMVERAAPI 155 (339)
T ss_pred HHHHHHHHHHHHhCCCceEEEEEeCHHHHHHHHHHHHCHHHHhhheee
Confidence 333333447778999995 79999999999999999999987777543
No 11
>PRK10673 acyl-CoA esterase; Provisional
Probab=98.72 E-value=2.9e-08 Score=69.34 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=35.9
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccce
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISL 66 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~ 66 (106)
++.+.+..+++.++.++++++||||||.+++.++..+|+++++++.
T Consensus 66 ~~~~d~~~~l~~l~~~~~~lvGhS~Gg~va~~~a~~~~~~v~~lvl 111 (255)
T PRK10673 66 AMAQDLLDTLDALQIEKATFIGHSMGGKAVMALTALAPDRIDKLVA 111 (255)
T ss_pred HHHHHHHHHHHHcCCCceEEEEECHHHHHHHHHHHhCHhhcceEEE
Confidence 3334555566667888999999999999999999999987665543
No 12
>KOG4409|consensus
Probab=98.69 E-value=2.9e-08 Score=74.15 Aligned_cols=54 Identities=26% Similarity=0.233 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcccc
Q psy17377 23 TATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHM 79 (106)
Q Consensus 23 ~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~~ 79 (106)
-+-++..+...+++|.++||||+||.++..||..||+++++ +++.+|.+.....
T Consensus 147 vesiE~WR~~~~L~KmilvGHSfGGYLaa~YAlKyPerV~k---LiLvsP~Gf~~~~ 200 (365)
T KOG4409|consen 147 VESIEQWRKKMGLEKMILVGHSFGGYLAAKYALKYPERVEK---LILVSPWGFPEKP 200 (365)
T ss_pred HHHHHHHHHHcCCcceeEeeccchHHHHHHHHHhChHhhce---EEEecccccccCC
Confidence 34455567788999999999999999999999999998554 4788998877654
No 13
>PRK10749 lysophospholipase L2; Provisional
Probab=98.69 E-value=4.4e-08 Score=72.17 Aligned_cols=59 Identities=19% Similarity=0.120 Sum_probs=42.3
Q ss_pred cccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 13 KFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 13 s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
+++++. .|+.++++.+.+..+..+++++||||||.+++.+++.+|+. +..+++++|...
T Consensus 109 ~~~~~~-~d~~~~~~~~~~~~~~~~~~l~GhSmGG~ia~~~a~~~p~~---v~~lvl~~p~~~ 167 (330)
T PRK10749 109 RFNDYV-DDLAAFWQQEIQPGPYRKRYALAHSMGGAILTLFLQRHPGV---FDAIALCAPMFG 167 (330)
T ss_pred cHHHHH-HHHHHHHHHHHhcCCCCCeEEEEEcHHHHHHHHHHHhCCCC---cceEEEECchhc
Confidence 444443 45555555544444667999999999999999999999986 455677788643
No 14
>PLN02965 Probable pheophorbidase
Probab=98.65 E-value=6.7e-08 Score=68.33 Aligned_cols=48 Identities=27% Similarity=0.221 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHhCC-CcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 22 TTATIDYVLNVTGK-KKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 22 l~~~i~~v~~~~~~-~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
+.+.+..+++.++. ++++++||||||.+++.++..+|++++ .++++++
T Consensus 57 ~a~dl~~~l~~l~~~~~~~lvGhSmGG~ia~~~a~~~p~~v~---~lvl~~~ 105 (255)
T PLN02965 57 YNRPLFALLSDLPPDHKVILVGHSIGGGSVTEALCKFTDKIS---MAIYVAA 105 (255)
T ss_pred HHHHHHHHHHhcCCCCCEEEEecCcchHHHHHHHHhCchhee---EEEEEcc
Confidence 33445556677766 499999999999999999999998755 4455554
No 15
>PRK00870 haloalkane dehalogenase; Provisional
Probab=98.63 E-value=1.4e-07 Score=68.28 Aligned_cols=49 Identities=8% Similarity=0.053 Sum_probs=38.3
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
++.+.+..++++++.++++++||||||.+++.++..+|++++++ ++++|
T Consensus 100 ~~a~~l~~~l~~l~~~~v~lvGhS~Gg~ia~~~a~~~p~~v~~l---vl~~~ 148 (302)
T PRK00870 100 RHVEWMRSWFEQLDLTDVTLVCQDWGGLIGLRLAAEHPDRFARL---VVANT 148 (302)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEEChHHHHHHHHHHhChhheeEE---EEeCC
Confidence 33455556667788899999999999999999999999875544 55555
No 16
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=98.61 E-value=8.9e-08 Score=70.09 Aligned_cols=59 Identities=19% Similarity=0.097 Sum_probs=42.7
Q ss_pred cccccccccHHHHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 13 KFHEIGIYDTTATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 13 s~~~~~~~Dl~~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
+++++. .|+.++++.+.... ...+++++||||||.+++.++..+|++ +..+++++|...
T Consensus 110 ~~~~~~-~D~~~~i~~l~~~~~~~~~~i~l~GhSmGG~ia~~~a~~~p~~---v~~lvl~~~~~~ 170 (330)
T PLN02298 110 NVDLVV-EDCLSFFNSVKQREEFQGLPRFLYGESMGGAICLLIHLANPEG---FDGAVLVAPMCK 170 (330)
T ss_pred CHHHHH-HHHHHHHHHHHhcccCCCCCEEEEEecchhHHHHHHHhcCccc---ceeEEEeccccc
Confidence 444443 67777777765532 224799999999999999999999975 556677787654
No 17
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=98.60 E-value=1.6e-07 Score=65.23 Aligned_cols=51 Identities=12% Similarity=0.012 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
++.+.+..++++.+.++++++||||||.+++.+++++|+. ++..+++.+|.
T Consensus 51 ~~~~~l~~~l~~~~~~~~~lvG~S~Gg~va~~~a~~~~~~--~v~~lvl~~~~ 101 (242)
T PRK11126 51 DVSRLLSQTLQSYNILPYWLVGYSLGGRIAMYYACQGLAG--GLCGLIVEGGN 101 (242)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCCcc--cccEEEEeCCC
Confidence 3344555556677889999999999999999999998753 25555555544
No 18
>PRK03592 haloalkane dehalogenase; Provisional
Probab=98.60 E-value=1.3e-07 Score=68.01 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=38.9
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
+..+.+..+++.++.++++++||||||.+++.++.++|++++ .+++++|
T Consensus 78 ~~a~dl~~ll~~l~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~---~lil~~~ 126 (295)
T PRK03592 78 DHARYLDAWFDALGLDDVVLVGHDWGSALGFDWAARHPDRVR---GIAFMEA 126 (295)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEECHHHHHHHHHHHhChhhee---EEEEECC
Confidence 334455666777888999999999999999999999998754 4566665
No 19
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=98.58 E-value=1e-07 Score=70.46 Aligned_cols=51 Identities=22% Similarity=0.279 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHhCCCcE-EEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 20 YDTTATIDYVLNVTGKKKV-ITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~-~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
.|+...+..++++++.++. +++||||||.+++.++.++|++++++ +++++.
T Consensus 121 ~~~a~dl~~ll~~l~l~~~~~lvG~SmGG~vA~~~A~~~P~~V~~L---vLi~s~ 172 (343)
T PRK08775 121 ADQADAIALLLDALGIARLHAFVGYSYGALVGLQFASRHPARVRTL---VVVSGA 172 (343)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEEECHHHHHHHHHHHHChHhhheE---EEECcc
Confidence 3555666677788888775 79999999999999999999975544 555553
No 20
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=98.57 E-value=1.3e-07 Score=66.97 Aligned_cols=49 Identities=18% Similarity=0.228 Sum_probs=39.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 22 TTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 22 l~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
.+..+..+++.++.++++++||||||.+++.+++++|++++ .+++++|.
T Consensus 87 ~~~~l~~~l~~l~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~---~lvl~~~~ 135 (282)
T TIGR03343 87 NARAVKGLMDALDIEKAHLVGNSMGGATALNFALEYPDRIG---KLILMGPG 135 (282)
T ss_pred hHHHHHHHHHHcCCCCeeEEEECchHHHHHHHHHhChHhhc---eEEEECCC
Confidence 35566677788899999999999999999999999998755 44566654
No 21
>KOG1454|consensus
Probab=98.55 E-value=2.1e-07 Score=69.21 Aligned_cols=57 Identities=21% Similarity=0.199 Sum_probs=46.1
Q ss_pred HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccccc
Q psy17377 24 ATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMH 80 (106)
Q Consensus 24 ~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~~~ 80 (106)
..+..+......++++++|||+||.+++.+|+.+|+.+++++.+++++|..+.....
T Consensus 116 ~~i~~~~~~~~~~~~~lvghS~Gg~va~~~Aa~~P~~V~~lv~~~~~~~~~~~~~~~ 172 (326)
T KOG1454|consen 116 ELIRRFVKEVFVEPVSLVGHSLGGIVALKAAAYYPETVDSLVLLDLLGPPVYSTPKG 172 (326)
T ss_pred HHHHHHHHhhcCcceEEEEeCcHHHHHHHHHHhCcccccceeeecccccccccCCcc
Confidence 344555556778889999999999999999999999998888777777777665544
No 22
>PHA02857 monoglyceride lipase; Provisional
Probab=98.54 E-value=2.1e-07 Score=66.15 Aligned_cols=51 Identities=22% Similarity=0.260 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 22 TTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 22 l~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
+...++.+.+.....+++++||||||.+++.++..+|++ ++.+++++|...
T Consensus 83 ~~~~l~~~~~~~~~~~~~lvG~S~GG~ia~~~a~~~p~~---i~~lil~~p~~~ 133 (276)
T PHA02857 83 VVQHVVTIKSTYPGVPVFLLGHSMGATISILAAYKNPNL---FTAMILMSPLVN 133 (276)
T ss_pred HHHHHHHHHhhCCCCCEEEEEcCchHHHHHHHHHhCccc---cceEEEeccccc
Confidence 333333333333446899999999999999999999986 556678888654
No 23
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=98.53 E-value=2.3e-07 Score=65.13 Aligned_cols=49 Identities=16% Similarity=0.119 Sum_probs=36.9
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
++.+.+..+++..+.++++++||||||.+++.++..+|++++ .++++++
T Consensus 80 ~~~~~l~~~i~~~~~~~~~lvG~S~Gg~~a~~~a~~~p~~v~---~~v~~~~ 128 (278)
T TIGR03056 80 SMAEDLSALCAAEGLSPDGVIGHSAGAAIALRLALDGPVTPR---MVVGINA 128 (278)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECccHHHHHHHHHhCCcccc---eEEEEcC
Confidence 344555556667788899999999999999999999997644 3444444
No 24
>PRK13604 luxD acyl transferase; Provisional
Probab=98.53 E-value=2.5e-07 Score=68.39 Aligned_cols=67 Identities=12% Similarity=-0.024 Sum_probs=51.4
Q ss_pred CCccccccccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 4 LYETYMILVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 4 ~~~~~~w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
.|+++|-+++.... .+|+.++++++++. +.+++.++||||||.+++..++..+ +..+++.+|+..+.
T Consensus 78 eS~G~~~~~t~s~g-~~Dl~aaid~lk~~-~~~~I~LiG~SmGgava~~~A~~~~-----v~~lI~~sp~~~l~ 144 (307)
T PRK13604 78 LSSGTIDEFTMSIG-KNSLLTVVDWLNTR-GINNLGLIAASLSARIAYEVINEID-----LSFLITAVGVVNLR 144 (307)
T ss_pred CCCCccccCccccc-HHHHHHHHHHHHhc-CCCceEEEEECHHHHHHHHHhcCCC-----CCEEEEcCCcccHH
Confidence 35677766666554 69999999999875 5679999999999999876665322 66678999988744
No 25
>PRK03204 haloalkane dehalogenase; Provisional
Probab=98.52 E-value=2.6e-07 Score=66.77 Aligned_cols=51 Identities=12% Similarity=0.194 Sum_probs=41.3
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
.++.+.+..++++++.++++++||||||.+++.++..+|++++++ ++++|.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~lvG~S~Gg~va~~~a~~~p~~v~~l---vl~~~~ 135 (286)
T PRK03204 85 DEHARVIGEFVDHLGLDRYLSMGQDWGGPISMAVAVERADRVRGV---VLGNTW 135 (286)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEECccHHHHHHHHHhChhheeEE---EEECcc
Confidence 456677777888889999999999999999999999999875554 455543
No 26
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=98.52 E-value=2.5e-07 Score=72.11 Aligned_cols=48 Identities=23% Similarity=0.165 Sum_probs=38.2
Q ss_pred HHH-HHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 24 ATI-DYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 24 ~~i-~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
+.+ ..+++.++.++++++||||||.+++.++..+|+++ ..+++++|..
T Consensus 261 ~~l~~~ll~~lg~~k~~LVGhSmGG~iAl~~A~~~Pe~V---~~LVLi~~~~ 309 (481)
T PLN03087 261 EMIERSVLERYKVKSFHIVAHSLGCILALALAVKHPGAV---KSLTLLAPPY 309 (481)
T ss_pred HHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHhChHhc---cEEEEECCCc
Confidence 344 35677889999999999999999999999999864 4556667644
No 27
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=98.52 E-value=2.5e-07 Score=64.41 Aligned_cols=46 Identities=15% Similarity=0.029 Sum_probs=37.0
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccc
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKIS 65 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~ 65 (106)
.++.+.+..+++.++.++++++||||||.+++.++..+|+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~liG~S~Gg~ia~~~a~~~p~~v~~lv 125 (288)
T TIGR01250 80 DYFVDELEEVREKLGLDKFYLLGHSWGGMLAQEYALKYGQHLKGLI 125 (288)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEeehHHHHHHHHHHhCccccceee
Confidence 3444556667778888899999999999999999999998755553
No 28
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.51 E-value=2.1e-07 Score=73.49 Aligned_cols=72 Identities=13% Similarity=0.015 Sum_probs=56.0
Q ss_pred CCCCccccccccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHH----HHHcCcccccccceEEeechhhhcc
Q psy17377 2 GNLYETYMILVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLV----AGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 2 ~~~~~~~~w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~----~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
|||...+ -.++++++. ..+.+.++.+++.+|.++++++||||||+++.. +++++++. +|..+++++....+.
T Consensus 256 ~nP~~~~-r~~~ldDYv-~~i~~Ald~V~~~tG~~~vnl~GyC~GGtl~a~~~a~~aA~~~~~--~V~sltllatplDf~ 331 (560)
T TIGR01839 256 RNPDKAH-REWGLSTYV-DALKEAVDAVRAITGSRDLNLLGACAGGLTCAALVGHLQALGQLR--KVNSLTYLVSLLDST 331 (560)
T ss_pred CCCChhh-cCCCHHHHH-HHHHHHHHHHHHhcCCCCeeEEEECcchHHHHHHHHHHHhcCCCC--ceeeEEeeecccccC
Confidence 5665443 567889997 599999999999999999999999999999997 77787752 466666555544443
No 29
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=98.50 E-value=2.3e-07 Score=71.55 Aligned_cols=56 Identities=27% Similarity=0.223 Sum_probs=45.7
Q ss_pred cccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccc-cccceEEeechhh
Q psy17377 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQ-SKISLSILWAQAA 74 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~-~~v~~~v~~~P~~ 74 (106)
..++.+.++.+.++.+.+++++|||||||.++..++..+|+.. ..|..+|.++++.
T Consensus 145 ~~~Lk~lIe~~~~~~g~~kV~LVGHSMGGlva~~fl~~~p~~~~k~I~~~I~la~P~ 201 (440)
T PLN02733 145 MDGLKKKLETVYKASGGKKVNIISHSMGGLLVKCFMSLHSDVFEKYVNSWIAIAAPF 201 (440)
T ss_pred HHHHHHHHHHHHHHcCCCCEEEEEECHhHHHHHHHHHHCCHhHHhHhccEEEECCCC
Confidence 3677788888888888889999999999999999999888754 3466777777653
No 30
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=98.50 E-value=2e-07 Score=69.05 Aligned_cols=37 Identities=24% Similarity=0.177 Sum_probs=30.6
Q ss_pred CcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 36 KKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 36 ~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
.+++++||||||.+++.++..+|++ +.++++++|...
T Consensus 162 ~~~~LvGhSmGG~val~~a~~~p~~---v~glVLi~p~~~ 198 (349)
T PLN02385 162 LPSFLFGQSMGGAVALKVHLKQPNA---WDGAILVAPMCK 198 (349)
T ss_pred CCEEEEEeccchHHHHHHHHhCcch---hhheeEeccccc
Confidence 3799999999999999999999986 455577777653
No 31
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=98.49 E-value=4.9e-07 Score=65.61 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=43.5
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccccch
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMHM 81 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~~~~ 81 (106)
.|+.+.++++.+ .+.++++++||||||.+++.++.++|+. +..+++++|+........
T Consensus 84 ~Dv~~ai~~L~~-~~~~~v~LvG~SmGG~vAl~~A~~~p~~---v~~lVL~~P~~~g~~~l~ 141 (266)
T TIGR03101 84 EDVAAAYRWLIE-QGHPPVTLWGLRLGALLALDAANPLAAK---CNRLVLWQPVVSGKQQLQ 141 (266)
T ss_pred HHHHHHHHHHHh-cCCCCEEEEEECHHHHHHHHHHHhCccc---cceEEEeccccchHHHHH
Confidence 566666666554 4678999999999999999999998875 555678899766444333
No 32
>PRK06489 hypothetical protein; Provisional
Probab=98.48 E-value=2.2e-07 Score=69.24 Aligned_cols=37 Identities=24% Similarity=0.396 Sum_probs=31.6
Q ss_pred HHHHhCCCcEE-EEEeChHHHHHHHHHHcCcccccccc
Q psy17377 29 VLNVTGKKKVI-TIGHSMGTTNVLVAGSLRPEYQSKIS 65 (106)
Q Consensus 29 v~~~~~~~~~~-lvGHSmGg~i~l~~~~~~p~~~~~v~ 65 (106)
++++++.++++ ++||||||.+++.+++++|+++++++
T Consensus 146 l~~~lgi~~~~~lvG~SmGG~vAl~~A~~~P~~V~~LV 183 (360)
T PRK06489 146 VTEGLGVKHLRLILGTSMGGMHAWMWGEKYPDFMDALM 183 (360)
T ss_pred HHHhcCCCceeEEEEECHHHHHHHHHHHhCchhhheee
Confidence 45678888986 89999999999999999999866664
No 33
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=98.47 E-value=4.4e-07 Score=66.03 Aligned_cols=46 Identities=26% Similarity=0.353 Sum_probs=39.2
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccc
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKIS 65 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~ 65 (106)
.|+.+.+..+++.++.++++++||||||.+++.++..+|+++++++
T Consensus 79 ~~~~~dl~~l~~~l~~~~~~lvG~S~GG~ia~~~a~~~p~~v~~lv 124 (306)
T TIGR01249 79 WDLVADIEKLREKLGIKNWLVFGGSWGSTLALAYAQTHPEVVTGLV 124 (306)
T ss_pred HHHHHHHHHHHHHcCCCCEEEEEECHHHHHHHHHHHHChHhhhhhe
Confidence 4667777888888888999999999999999999999998765553
No 34
>PRK10349 carboxylesterase BioH; Provisional
Probab=98.47 E-value=4.9e-07 Score=63.62 Aligned_cols=45 Identities=20% Similarity=0.220 Sum_probs=36.3
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccc
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKIS 65 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~ 65 (106)
+++..+++.+.+ .+.+++++|||||||.+++.++..+|+++++++
T Consensus 59 ~~~~~~~~~l~~-~~~~~~~lvGhS~Gg~ia~~~a~~~p~~v~~li 103 (256)
T PRK10349 59 LSLADMAEAVLQ-QAPDKAIWLGWSLGGLVASQIALTHPERVQALV 103 (256)
T ss_pred CCHHHHHHHHHh-cCCCCeEEEEECHHHHHHHHHHHhChHhhheEE
Confidence 456667777665 567899999999999999999999998766553
No 35
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=98.46 E-value=3.7e-07 Score=68.65 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=39.7
Q ss_pred ccccHHHHHHHHHHHhCCCc-EEEEEeChHHHHHHHHHHcCcccccccc
Q psy17377 18 GIYDTTATIDYVLNVTGKKK-VITIGHSMGTTNVLVAGSLRPEYQSKIS 65 (106)
Q Consensus 18 ~~~Dl~~~i~~v~~~~~~~~-~~lvGHSmGg~i~l~~~~~~p~~~~~v~ 65 (106)
...|+.+.+..++++++.++ ++++||||||.+++.++..+|+++++++
T Consensus 128 ~~~~~~~~~~~~l~~l~~~~~~~lvG~S~Gg~ia~~~a~~~p~~v~~lv 176 (379)
T PRK00175 128 TIRDWVRAQARLLDALGITRLAAVVGGSMGGMQALEWAIDYPDRVRSAL 176 (379)
T ss_pred CHHHHHHHHHHHHHHhCCCCceEEEEECHHHHHHHHHHHhChHhhhEEE
Confidence 34555677777888899999 5899999999999999999998766554
No 36
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=98.45 E-value=5.3e-07 Score=68.53 Aligned_cols=51 Identities=22% Similarity=0.195 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhc
Q psy17377 23 TATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFL 76 (106)
Q Consensus 23 ~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~ 76 (106)
.+.+...++..+.++++++||||||.+++.++.++|+++ ..+++++|....
T Consensus 163 ~~~i~~~~~~l~~~~~~lvGhS~GG~la~~~a~~~p~~v---~~lvl~~p~~~~ 213 (402)
T PLN02894 163 IDSFEEWRKAKNLSNFILLGHSFGGYVAAKYALKHPEHV---QHLILVGPAGFS 213 (402)
T ss_pred HHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHhCchhh---cEEEEECCcccc
Confidence 334445566678889999999999999999999999864 455667776543
No 37
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=98.45 E-value=5.9e-07 Score=68.31 Aligned_cols=63 Identities=22% Similarity=0.242 Sum_probs=46.4
Q ss_pred cccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 13 KFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 13 s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
+++++ ..|+.+.++++.......+++++||||||.+++.++ .+|+..+++..+++.+|.....
T Consensus 186 ~~~~~-~~Dl~~~l~~l~~~~~~~~i~lvGhSmGG~ial~~a-~~p~~~~~v~glVL~sP~l~~~ 248 (395)
T PLN02652 186 SLDYV-VEDTEAFLEKIRSENPGVPCFLFGHSTGGAVVLKAA-SYPSIEDKLEGIVLTSPALRVK 248 (395)
T ss_pred CHHHH-HHHHHHHHHHHHHhCCCCCEEEEEECHHHHHHHHHH-hccCcccccceEEEECcccccc
Confidence 34443 367777777776655455899999999999999765 5676556788889999976544
No 38
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=98.43 E-value=4.2e-07 Score=62.53 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=38.6
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
.|....+..+++..+.++++++||||||.+++.+++.+|+.+.++ +++++.
T Consensus 64 ~~~~~~~~~~i~~~~~~~~~l~G~S~Gg~~a~~~a~~~~~~v~~~---i~~~~~ 114 (257)
T TIGR03611 64 AHMADDVLQLLDALNIERFHFVGHALGGLIGLQLALRYPERLLSL---VLINAW 114 (257)
T ss_pred HHHHHHHHHHHHHhCCCcEEEEEechhHHHHHHHHHHChHHhHHh---eeecCC
Confidence 444455666667778889999999999999999999998865544 455543
No 39
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=98.41 E-value=7.7e-07 Score=66.46 Aligned_cols=51 Identities=22% Similarity=0.185 Sum_probs=37.4
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHc-CcccccccceEEeechhh
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSL-RPEYQSKISLSILWAQAA 74 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~-~p~~~~~v~~~v~~~P~~ 74 (106)
+..+.+..+++.++.+++++|||||||.+++.+++. +|++++ .+++++|..
T Consensus 140 ~~a~~l~~~l~~l~~~~~~lvGhS~Gg~ia~~~a~~~~P~rV~---~LVLi~~~~ 191 (360)
T PLN02679 140 TWAELILDFLEEVVQKPTVLIGNSVGSLACVIAASESTRDLVR---GLVLLNCAG 191 (360)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECHHHHHHHHHHHhcChhhcC---EEEEECCcc
Confidence 334455556667788999999999999999988874 688754 456666543
No 40
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=98.41 E-value=3.2e-07 Score=62.46 Aligned_cols=46 Identities=17% Similarity=0.207 Sum_probs=36.7
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccc
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKIS 65 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~ 65 (106)
.+..+.+..+++..+.++++++||||||.+++.++..+|+++++++
T Consensus 63 ~~~~~~~~~~i~~~~~~~v~liG~S~Gg~~a~~~a~~~p~~v~~li 108 (251)
T TIGR02427 63 EDLADDVLALLDHLGIERAVFCGLSLGGLIAQGLAARRPDRVRALV 108 (251)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEeCchHHHHHHHHHHCHHHhHHHh
Confidence 3444556666777778899999999999999999999988766554
No 41
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=98.40 E-value=7.4e-07 Score=60.37 Aligned_cols=45 Identities=24% Similarity=0.254 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 26 i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
+..+++..+.++++++|||+||.+++.++.++|+. +..+++++|.
T Consensus 60 ~~~~~~~~~~~~~~l~G~S~Gg~ia~~~a~~~~~~---v~~lil~~~~ 104 (251)
T TIGR03695 60 LATLLDQLGIEPFFLVGYSMGGRIALYYALQYPER---VQGLILESGS 104 (251)
T ss_pred HHHHHHHcCCCeEEEEEeccHHHHHHHHHHhCchh---eeeeEEecCC
Confidence 44455666778999999999999999999999975 4455566554
No 42
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=98.40 E-value=7.8e-07 Score=60.42 Aligned_cols=45 Identities=13% Similarity=0.190 Sum_probs=36.4
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccc
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKIS 65 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~ 65 (106)
+++..+++.+.+... ++++++||||||.+++.++.++|+++++++
T Consensus 50 ~~~~~~~~~~~~~~~-~~~~lvG~S~Gg~~a~~~a~~~p~~v~~~i 94 (245)
T TIGR01738 50 LSLADAAEAIAAQAP-DPAIWLGWSLGGLVALHIAATHPDRVRALV 94 (245)
T ss_pred cCHHHHHHHHHHhCC-CCeEEEEEcHHHHHHHHHHHHCHHhhheee
Confidence 567777777776544 699999999999999999999998755553
No 43
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=98.39 E-value=7.3e-07 Score=65.51 Aligned_cols=61 Identities=26% Similarity=0.286 Sum_probs=47.3
Q ss_pred ccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccc
Q psy17377 14 FHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78 (106)
Q Consensus 14 ~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~ 78 (106)
|.++ ..|+.+.++.+.+.....+++++||||||.+++.++.+++. ++.++++.+|......
T Consensus 86 f~~~-~~dl~~~~~~~~~~~~~~p~~l~gHSmGg~Ia~~~~~~~~~---~i~~~vLssP~~~l~~ 146 (298)
T COG2267 86 FADY-VDDLDAFVETIAEPDPGLPVFLLGHSMGGLIALLYLARYPP---RIDGLVLSSPALGLGG 146 (298)
T ss_pred HHHH-HHHHHHHHHHHhccCCCCCeEEEEeCcHHHHHHHHHHhCCc---cccEEEEECccccCCh
Confidence 4444 36666777766654445799999999999999999999884 5778889999877763
No 44
>PLN02578 hydrolase
Probab=98.38 E-value=8.7e-07 Score=65.93 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=35.3
Q ss_pred HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 25 TIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 25 ~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
.+..+++....++++++||||||.+++.+++++|++++++ ++++|..
T Consensus 141 ~l~~~i~~~~~~~~~lvG~S~Gg~ia~~~A~~~p~~v~~l---vLv~~~~ 187 (354)
T PLN02578 141 QVADFVKEVVKEPAVLVGNSLGGFTALSTAVGYPELVAGV---ALLNSAG 187 (354)
T ss_pred HHHHHHHHhccCCeEEEEECHHHHHHHHHHHhChHhcceE---EEECCCc
Confidence 3444455566789999999999999999999999875544 5555443
No 45
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=98.38 E-value=5.4e-07 Score=65.40 Aligned_cols=52 Identities=21% Similarity=0.198 Sum_probs=38.2
Q ss_pred ccHHHHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 20 YDTTATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
.++.++++.+.+.. +.+++++|||||||.++..++...|+++. .++++.|+.
T Consensus 94 ~~la~~l~~L~~~~g~~~~~i~lIGhSlGa~vAg~~a~~~~~~v~---~iv~LDPa~ 147 (275)
T cd00707 94 AELAKFLDFLVDNTGLSLENVHLIGHSLGAHVAGFAGKRLNGKLG---RITGLDPAG 147 (275)
T ss_pred HHHHHHHHHHHHhcCCChHHEEEEEecHHHHHHHHHHHHhcCccc---eeEEecCCc
Confidence 35556666666653 45789999999999999999998887544 445565544
No 46
>PRK10985 putative hydrolase; Provisional
Probab=98.36 E-value=1.4e-06 Score=64.13 Aligned_cols=56 Identities=9% Similarity=0.118 Sum_probs=44.2
Q ss_pred cccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
..|+.++++++.++.+..+++++||||||.++..+++.+++. .++..++.++|...
T Consensus 114 ~~D~~~~i~~l~~~~~~~~~~~vG~S~GG~i~~~~~~~~~~~-~~~~~~v~i~~p~~ 169 (324)
T PRK10985 114 TEDARFFLRWLQREFGHVPTAAVGYSLGGNMLACLLAKEGDD-LPLDAAVIVSAPLM 169 (324)
T ss_pred hHHHHHHHHHHHHhCCCCCEEEEEecchHHHHHHHHHhhCCC-CCccEEEEEcCCCC
Confidence 578888999998887888999999999999999999887643 23566667776543
No 47
>TIGR03230 lipo_lipase lipoprotein lipase. Members of this protein family are lipoprotein lipase (EC 3.1.1.34), a eukaryotic triacylglycerol lipase active in plasma and similar to pancreatic and hepatic triacylglycerol lipases (EC 3.1.1.3). It is also called clearing factor. It cleaves chylomicron and VLDL triacylglycerols; it also has phospholipase A-1 activity.
Probab=98.34 E-value=9.5e-07 Score=68.20 Aligned_cols=52 Identities=21% Similarity=0.220 Sum_probs=37.7
Q ss_pred ccHHHHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 20 YDTTATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
.+++++++.+.+.. +.+++++|||||||.++..++...|+++.+| +++.|+.
T Consensus 101 ~~la~lI~~L~~~~gl~l~~VhLIGHSLGAhIAg~ag~~~p~rV~rI---tgLDPAg 154 (442)
T TIGR03230 101 KDVAKFVNWMQEEFNYPWDNVHLLGYSLGAHVAGIAGSLTKHKVNRI---TGLDPAG 154 (442)
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHHHhCCcceeEE---EEEcCCC
Confidence 34555666655444 4689999999999999999998888765555 5555543
No 48
>COG2021 MET2 Homoserine acetyltransferase [Amino acid transport and metabolism]
Probab=98.32 E-value=6.7e-07 Score=67.25 Aligned_cols=60 Identities=20% Similarity=0.262 Sum_probs=45.9
Q ss_pred CCCccccccccccccccccHHHHHHHHHHHhCCCcEE-EEEeChHHHHHHHHHHcCcccccccceE
Q psy17377 3 NLYETYMILVKFHEIGIYDTTATIDYVLNVTGKKKVI-TIGHSMGTTNVLVAGSLRPEYQSKISLS 67 (106)
Q Consensus 3 ~~~~~~~w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~-lvGHSmGg~i~l~~~~~~p~~~~~v~~~ 67 (106)
.+.+.+|-..++. |.-+.-..+++++|++++. +||-||||+.++.++..+|+++++++.+
T Consensus 118 ~~yg~~FP~~ti~-----D~V~aq~~ll~~LGI~~l~avvGgSmGGMqaleWa~~yPd~V~~~i~i 178 (368)
T COG2021 118 KPYGSDFPVITIR-----DMVRAQRLLLDALGIKKLAAVVGGSMGGMQALEWAIRYPDRVRRAIPI 178 (368)
T ss_pred CccccCCCcccHH-----HHHHHHHHHHHhcCcceEeeeeccChHHHHHHHHHHhChHHHhhhhee
Confidence 3444445554444 4445557788999999998 8999999999999999999998877543
No 49
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=98.31 E-value=2.1e-06 Score=60.80 Aligned_cols=53 Identities=26% Similarity=0.299 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHh-----CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 22 TTATIDYVLNVT-----GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 22 l~~~i~~v~~~~-----~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
+...++.+++.. +.+++++|||||||.++-.++...+....++..++.++.+.
T Consensus 66 ~~~~i~~i~~~~~~~~~~~~~vilVgHSmGGlvar~~l~~~~~~~~~v~~iitl~tPh 123 (225)
T PF07819_consen 66 LAEAIKYILELYKSNRPPPRSVILVGHSMGGLVARSALSLPNYDPDSVKTIITLGTPH 123 (225)
T ss_pred HHHHHHHHHHhhhhccCCCCceEEEEEchhhHHHHHHHhccccccccEEEEEEEcCCC
Confidence 444555565554 66799999999999999988876554445677777666433
No 50
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=98.26 E-value=2.4e-06 Score=61.62 Aligned_cols=45 Identities=29% Similarity=0.273 Sum_probs=32.7
Q ss_pred HHHHHHHHhC-CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 25 TIDYVLNVTG-KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 25 ~i~~v~~~~~-~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
.+..+++..+ .+++++|||||||.++..++..+|++++ .++++++
T Consensus 75 ~l~~~i~~l~~~~~v~lvGhS~GG~v~~~~a~~~p~~v~---~lv~~~~ 120 (273)
T PLN02211 75 PLIDFLSSLPENEKVILVGHSAGGLSVTQAIHRFPKKIC---LAVYVAA 120 (273)
T ss_pred HHHHHHHhcCCCCCEEEEEECchHHHHHHHHHhChhhee---EEEEecc
Confidence 3333444443 4799999999999999999988887644 4455554
No 51
>PLN02511 hydrolase
Probab=98.25 E-value=4.6e-06 Score=63.13 Aligned_cols=54 Identities=15% Similarity=0.077 Sum_probs=43.1
Q ss_pred cccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
..|+.++++++..+....+++++||||||.+++.|+.++|+.. .|...+++++.
T Consensus 156 ~~Dl~~~i~~l~~~~~~~~~~lvG~SlGg~i~~~yl~~~~~~~-~v~~~v~is~p 209 (388)
T PLN02511 156 TGDLRQVVDHVAGRYPSANLYAAGWSLGANILVNYLGEEGENC-PLSGAVSLCNP 209 (388)
T ss_pred hHHHHHHHHHHHHHCCCCCEEEEEechhHHHHHHHHHhcCCCC-CceEEEEECCC
Confidence 5788889999888776678999999999999999999998752 25555555543
No 52
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=98.24 E-value=1.4e-06 Score=68.62 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=46.4
Q ss_pred ccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHH----HHHcC-cccccccceEEeechhhhcc
Q psy17377 12 VKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLV----AGSLR-PEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 12 ~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~----~~~~~-p~~~~~v~~~v~~~P~~~~~ 77 (106)
++++++...++.+.++.+++.++.++++++||||||+++.. +++.+ |++ +..+++++....+.
T Consensus 238 ~~~ddY~~~~i~~al~~v~~~~g~~kv~lvG~cmGGtl~a~ala~~aa~~~~~r---v~slvll~t~~Df~ 305 (532)
T TIGR01838 238 KTFDDYIRDGVIAALEVVEAITGEKQVNCVGYCIGGTLLSTALAYLAARGDDKR---IKSATFFTTLLDFS 305 (532)
T ss_pred CChhhhHHHHHHHHHHHHHHhcCCCCeEEEEECcCcHHHHHHHHHHHHhCCCCc---cceEEEEecCcCCC
Confidence 35667777789999999999999999999999999998632 44454 554 55556665544444
No 53
>PRK11071 esterase YqiA; Provisional
Probab=98.24 E-value=3.3e-06 Score=58.08 Aligned_cols=50 Identities=12% Similarity=0.068 Sum_probs=40.4
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
.+..+.++.++++.+.++++++||||||.+++.++..+|. + +++++|...
T Consensus 45 ~~~~~~l~~l~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~---~---~vl~~~~~~ 94 (190)
T PRK11071 45 ADAAELLESLVLEHGGDPLGLVGSSLGGYYATWLSQCFML---P---AVVVNPAVR 94 (190)
T ss_pred HHHHHHHHHHHHHcCCCCeEEEEECHHHHHHHHHHHHcCC---C---EEEECCCCC
Confidence 3566778888888888999999999999999999999883 2 356777554
No 54
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=98.22 E-value=3.9e-06 Score=61.80 Aligned_cols=51 Identities=25% Similarity=0.311 Sum_probs=39.4
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
++.+.+..+++..+..+++++||||||.+++.++..+|+++ ..+++++|..
T Consensus 182 ~~~~~~~~~~~~~~~~~~~lvG~S~Gg~~a~~~a~~~~~~v---~~lv~~~~~~ 232 (371)
T PRK14875 182 ELAAAVLAFLDALGIERAHLVGHSMGGAVALRLAARAPQRV---ASLTLIAPAG 232 (371)
T ss_pred HHHHHHHHHHHhcCCccEEEEeechHHHHHHHHHHhCchhe---eEEEEECcCC
Confidence 44455566677788889999999999999999999988764 4556667654
No 55
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=98.21 E-value=4.7e-06 Score=57.76 Aligned_cols=46 Identities=22% Similarity=0.148 Sum_probs=37.2
Q ss_pred cccHHHHHHHHHHHhCC--CcEEEEEeChHHHHHHHHHHcCccccccc
Q psy17377 19 IYDTTATIDYVLNVTGK--KKVITIGHSMGTTNVLVAGSLRPEYQSKI 64 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~--~~~~lvGHSmGg~i~l~~~~~~p~~~~~v 64 (106)
..|+..+++++.++.+. ++++++||||||.+++.++..+|+....+
T Consensus 76 ~~~~~~~i~~~~~~~~id~~~i~l~G~S~Gg~~a~~~a~~~p~~~~~~ 123 (212)
T TIGR01840 76 VESLHQLIDAVKANYSIDPNRVYVTGLSAGGGMTAVLGCTYPDVFAGG 123 (212)
T ss_pred HHHHHHHHHHHHHhcCcChhheEEEEECHHHHHHHHHHHhCchhheEE
Confidence 46677788888776544 58999999999999999999999875444
No 56
>PLN02442 S-formylglutathione hydrolase
Probab=98.19 E-value=5.1e-06 Score=60.31 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=39.3
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
.+++..++...+..+.+++.++||||||..++.++.++|++.. .++.++|+..
T Consensus 127 ~~l~~~i~~~~~~~~~~~~~i~G~S~GG~~a~~~a~~~p~~~~---~~~~~~~~~~ 179 (283)
T PLN02442 127 KELPKLLSDNFDQLDTSRASIFGHSMGGHGALTIYLKNPDKYK---SVSAFAPIAN 179 (283)
T ss_pred HHHHHHHHHHHHhcCCCceEEEEEChhHHHHHHHHHhCchhEE---EEEEECCccC
Confidence 4455555555455677899999999999999999999998754 4456666644
No 57
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=98.17 E-value=7.3e-06 Score=62.22 Aligned_cols=52 Identities=15% Similarity=0.162 Sum_probs=41.1
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
.++...+..++++++.++++++|||+||.+++.++..+|++ +..+++++|..
T Consensus 181 ~~~a~~l~~~i~~l~~~~~~LvG~s~GG~ia~~~a~~~P~~---v~~lILi~~~~ 232 (383)
T PLN03084 181 DEYVSSLESLIDELKSDKVSLVVQGYFSPPVVKYASAHPDK---IKKLILLNPPL 232 (383)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEECHHHHHHHHHHHhChHh---hcEEEEECCCC
Confidence 34445566677778889999999999999999999999986 55556777754
No 58
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=98.16 E-value=2.4e-06 Score=63.37 Aligned_cols=63 Identities=19% Similarity=0.182 Sum_probs=42.5
Q ss_pred cccccccccHHHHHHHHHHH-------------------hC-CCcEEEEEeChHHHHHHHHHHcCccc---c--cccceE
Q psy17377 13 KFHEIGIYDTTATIDYVLNV-------------------TG-KKKVITIGHSMGTTNVLVAGSLRPEY---Q--SKISLS 67 (106)
Q Consensus 13 s~~~~~~~Dl~~~i~~v~~~-------------------~~-~~~~~lvGHSmGg~i~l~~~~~~p~~---~--~~v~~~ 67 (106)
+++++. .|+.+.++.+.+. .. ..+++++||||||.+++.++..+++. . ..+.++
T Consensus 100 ~~~~~v-~Dl~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~GhSmGg~i~~~~~~~~~~~~~~~~~~~i~g~ 178 (332)
T TIGR01607 100 CFDDLV-YDVIQYMNRINDSIILENETKSDDESYDIVNTKENRLPMYIIGLSMGGNIALRLLELLGKSNENNDKLNIKGC 178 (332)
T ss_pred hHHHHH-HHHHHHHHHhhhhhccccccccccccccccccccCCCceeEeeccCccHHHHHHHHHhccccccccccccceE
Confidence 455553 6666677666541 11 34799999999999999998765532 1 257788
Q ss_pred Eeechhhhc
Q psy17377 68 ILWAQAAFL 76 (106)
Q Consensus 68 v~~~P~~~~ 76 (106)
++++|....
T Consensus 179 i~~s~~~~i 187 (332)
T TIGR01607 179 ISLSGMISI 187 (332)
T ss_pred EEeccceEE
Confidence 888886543
No 59
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=98.15 E-value=7.8e-06 Score=58.91 Aligned_cols=53 Identities=13% Similarity=0.117 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHHHh-CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 19 IYDTTATIDYVLNVT-GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~-~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
..|+.+.++.+.+.. +.++++++||||||.+++.++.. ++ +++.+++++|...
T Consensus 82 ~~d~~~~~~~l~~~~~g~~~i~l~G~S~Gg~~a~~~a~~-~~---~v~~lil~~p~~~ 135 (274)
T TIGR03100 82 DADIAAAIDAFREAAPHLRRIVAWGLCDAASAALLYAPA-DL---RVAGLVLLNPWVR 135 (274)
T ss_pred HHHHHHHHHHHHhhCCCCCcEEEEEECHHHHHHHHHhhh-CC---CccEEEEECCccC
Confidence 467888888887654 67889999999999999988754 33 4777788888743
No 60
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=98.13 E-value=2.1e-06 Score=65.69 Aligned_cols=71 Identities=23% Similarity=0.245 Sum_probs=56.1
Q ss_pred CCCCccccccccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeec-hhhh
Q psy17377 2 GNLYETYMILVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWA-QAAF 75 (106)
Q Consensus 2 ~~~~~~~~w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~-P~~~ 75 (106)
+||+..+. ..+++++...++...|+.+++.++.++++++|||+||++...+++.++.+ +|+.++.+. |+.+
T Consensus 148 ~nPd~~~~-~~~~edYi~e~l~~aid~v~~itg~~~InliGyCvGGtl~~~ala~~~~k--~I~S~T~lts~~DF 219 (445)
T COG3243 148 RNPDASLA-AKNLEDYILEGLSEAIDTVKDITGQKDINLIGYCVGGTLLAAALALMAAK--RIKSLTLLTSPVDF 219 (445)
T ss_pred cCchHhhh-hccHHHHHHHHHHHHHHHHHHHhCccccceeeEecchHHHHHHHHhhhhc--ccccceeeecchhh
Confidence 56665555 34778887788999999999999999999999999999999999998866 566655443 4433
No 61
>KOG2382|consensus
Probab=98.11 E-value=2.5e-06 Score=63.17 Aligned_cols=60 Identities=20% Similarity=0.275 Sum_probs=43.6
Q ss_pred ccccccccccHHHHHHHHHHHhCCCcEEEEEeChHH-HHHHHHHHcCcccccccceEEeechh
Q psy17377 12 VKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGT-TNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 12 ~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg-~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
.++++++ .|+..+++.+...+...++.++|||||| .+++..+..+|+.+++++.. .++|.
T Consensus 100 h~~~~ma-~dv~~Fi~~v~~~~~~~~~~l~GHsmGG~~~~m~~t~~~p~~~~rliv~-D~sP~ 160 (315)
T KOG2382|consen 100 HNYEAMA-EDVKLFIDGVGGSTRLDPVVLLGHSMGGVKVAMAETLKKPDLIERLIVE-DISPG 160 (315)
T ss_pred cCHHHHH-HHHHHHHHHcccccccCCceecccCcchHHHHHHHHHhcCcccceeEEE-ecCCc
Confidence 3455554 5555556555544456799999999999 88888888899998877644 67785
No 62
>KOG4178|consensus
Probab=98.08 E-value=5.9e-06 Score=61.35 Aligned_cols=49 Identities=22% Similarity=0.268 Sum_probs=40.5
Q ss_pred cccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccc
Q psy17377 17 IGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKIS 65 (106)
Q Consensus 17 ~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~ 65 (106)
+....+...+..+++.++.++++++||++|+.++..++..+|++++.+.
T Consensus 94 Yt~~~l~~di~~lld~Lg~~k~~lvgHDwGaivaw~la~~~Perv~~lv 142 (322)
T KOG4178|consen 94 YTIDELVGDIVALLDHLGLKKAFLVGHDWGAIVAWRLALFYPERVDGLV 142 (322)
T ss_pred eeHHHHHHHHHHHHHHhccceeEEEeccchhHHHHHHHHhChhhcceEE
Confidence 3344455677778889999999999999999999999999999866553
No 63
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=98.03 E-value=1.3e-05 Score=53.59 Aligned_cols=48 Identities=27% Similarity=0.411 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 23 TATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 23 ~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
.+.++.+++.++..+++++|||+||.+++.++..+|+.+++ +++++|.
T Consensus 75 ~~~~~~~~~~~~~~~~~l~G~S~Gg~~~~~~~~~~p~~~~~---~v~~~~~ 122 (282)
T COG0596 75 ADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPDRVRG---LVLIGPA 122 (282)
T ss_pred HHHHHHHHHHhCCCceEEEEecccHHHHHHHHHhcchhhhe---eeEecCC
Confidence 56677788888988899999999999999999999986444 4555544
No 64
>KOG1455|consensus
Probab=98.03 E-value=2.4e-05 Score=57.76 Aligned_cols=81 Identities=15% Similarity=0.147 Sum_probs=51.2
Q ss_pred cccHHHHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccccc--hhhH---HHHHHHh
Q psy17377 19 IYDTTATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMH--MKYM---IDVFYSL 91 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~~~--~~~~---~~~~~~~ 91 (106)
..|+.+..+.++.+. .-.+.++.||||||++++.++.++|+.-+ ++++++|..-..... .++. ...+..+
T Consensus 110 v~D~~~~~~~i~~~~e~~~lp~FL~GeSMGGAV~Ll~~~k~p~~w~---G~ilvaPmc~i~~~~kp~p~v~~~l~~l~~l 186 (313)
T KOG1455|consen 110 VDDVISFFDSIKEREENKGLPRFLFGESMGGAVALLIALKDPNFWD---GAILVAPMCKISEDTKPHPPVISILTLLSKL 186 (313)
T ss_pred HHHHHHHHHHHhhccccCCCCeeeeecCcchHHHHHHHhhCCcccc---cceeeecccccCCccCCCcHHHHHHHHHHHh
Confidence 355555555544432 33488999999999999999999887644 556777766433322 2221 4455556
Q ss_pred cCccceecCCc
Q psy17377 92 FVVSDVAFQSN 102 (106)
Q Consensus 92 ~~~~~~~~~~~ 102 (106)
+.+-...|..+
T Consensus 187 iP~wk~vp~~d 197 (313)
T KOG1455|consen 187 IPTWKIVPTKD 197 (313)
T ss_pred CCceeecCCcc
Confidence 66655666554
No 65
>PF06028 DUF915: Alpha/beta hydrolase of unknown function (DUF915); InterPro: IPR010315 This family consists of bacterial proteins of unknown function, which are hydrolase-like.; PDB: 3LP5_A 3FLE_A 3DS8_A.
Probab=98.02 E-value=1.8e-05 Score=57.21 Aligned_cols=53 Identities=19% Similarity=0.102 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccc--cccceEEeec-hhh
Q psy17377 22 TTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQ--SKISLSILWA-QAA 74 (106)
Q Consensus 22 l~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~--~~v~~~v~~~-P~~ 74 (106)
+.+++.++.++.+.+++.+|||||||.+.+.|+..+.... -++..++.++ |..
T Consensus 89 l~~vl~~L~~~Y~~~~~N~VGHSmGg~~~~~yl~~~~~~~~~P~l~K~V~Ia~pfn 144 (255)
T PF06028_consen 89 LKKVLKYLKKKYHFKKFNLVGHSMGGLSWTYYLENYGNDKNLPKLNKLVTIAGPFN 144 (255)
T ss_dssp HHHHHHHHHHCC--SEEEEEEETHHHHHHHHHHHHCTTGTTS-EEEEEEEES--TT
T ss_pred HHHHHHHHHHhcCCCEEeEEEECccHHHHHHHHHHhccCCCCcccceEEEeccccC
Confidence 4456666777778999999999999999999998754321 1455556555 443
No 66
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=98.00 E-value=1.1e-05 Score=57.15 Aligned_cols=36 Identities=42% Similarity=0.317 Sum_probs=30.4
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHc
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
..+.++|+.|++.++. |+.+||||||+.++-.|...
T Consensus 60 ~~l~~fI~~Vl~~TGa-kVDIVgHS~G~~iaR~yi~~ 95 (219)
T PF01674_consen 60 KQLRAFIDAVLAYTGA-KVDIVGHSMGGTIARYYIKG 95 (219)
T ss_dssp HHHHHHHHHHHHHHT---EEEEEETCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhCC-EEEEEEcCCcCHHHHHHHHH
Confidence 3678899999999999 99999999999999988864
No 67
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.96 E-value=2.3e-05 Score=51.75 Aligned_cols=52 Identities=15% Similarity=0.089 Sum_probs=34.8
Q ss_pred HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCccc-ccccceEEeechhhhc
Q psy17377 25 TIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEY-QSKISLSILWAQAAFL 76 (106)
Q Consensus 25 ~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~-~~~v~~~v~~~P~~~~ 76 (106)
.++..+.+....+++++||||||.++..++...++. ..++..++.++|+...
T Consensus 17 ~~~~~~~~~p~~~i~v~GHSlGg~lA~l~a~~~~~~~~~~~~~~~~fg~p~~~ 69 (153)
T cd00741 17 LLKSALAQYPDYKIHVTGHSLGGALAGLAGLDLRGRGLGRLVRVYTFGPPRVG 69 (153)
T ss_pred HHHHHHHHCCCCeEEEEEcCHHHHHHHHHHHHHHhccCCCceEEEEeCCCccc
Confidence 333333334667999999999999999988875542 2345556667765543
No 68
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=97.92 E-value=3.7e-05 Score=55.41 Aligned_cols=40 Identities=23% Similarity=0.211 Sum_probs=32.1
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
.+.+++.++||||||.+++.++..+|+.. ..+++++|...
T Consensus 135 ~~~~~~~~~G~S~GG~~a~~~a~~~p~~~---~~~~~~~~~~~ 174 (275)
T TIGR02821 135 LDGERQGITGHSMGGHGALVIALKNPDRF---KSVSAFAPIVA 174 (275)
T ss_pred CCCCceEEEEEChhHHHHHHHHHhCcccc---eEEEEECCccC
Confidence 35568999999999999999999999874 45566777643
No 69
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=97.91 E-value=1.4e-05 Score=60.72 Aligned_cols=54 Identities=22% Similarity=0.131 Sum_probs=41.8
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcc---cccccceEEeechhh
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE---YQSKISLSILWAQAA 74 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~---~~~~v~~~v~~~P~~ 74 (106)
..+.+.|+...+.. -+|+.+|||||||.++..+....+. ..+.|..++.++++.
T Consensus 104 ~~lk~~ie~~~~~~-~~kv~li~HSmGgl~~~~fl~~~~~~~W~~~~i~~~i~i~~p~ 160 (389)
T PF02450_consen 104 TKLKQLIEEAYKKN-GKKVVLIAHSMGGLVARYFLQWMPQEEWKDKYIKRFISIGTPF 160 (389)
T ss_pred HHHHHHHHHHHHhc-CCcEEEEEeCCCchHHHHHHHhccchhhHHhhhhEEEEeCCCC
Confidence 45666777766655 6799999999999999999988753 345688888888654
No 70
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=97.90 E-value=5.5e-05 Score=48.35 Aligned_cols=49 Identities=18% Similarity=0.302 Sum_probs=37.1
Q ss_pred ccHHHHHHHHHH-HhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 20 YDTTATIDYVLN-VTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 20 ~Dl~~~i~~v~~-~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
.++.++++.+.+ ..+..++.++|||+||.++..++.+.| +++.+++++|
T Consensus 44 ~~~~~~~~~~~~~~~~~~~i~l~G~S~Gg~~a~~~~~~~~----~v~~~v~~~~ 93 (145)
T PF12695_consen 44 DAVERVLADIRAGYPDPDRIILIGHSMGGAIAANLAARNP----RVKAVVLLSP 93 (145)
T ss_dssp HHHHHHHHHHHHHHCTCCEEEEEEETHHHHHHHHHHHHST----TESEEEEESE
T ss_pred HHHHHHHHHHHhhcCCCCcEEEEEEccCcHHHHHHhhhcc----ceeEEEEecC
Confidence 355556666533 347789999999999999999998763 4667788888
No 71
>PLN00021 chlorophyllase
Probab=97.89 E-value=2.7e-05 Score=57.68 Aligned_cols=43 Identities=19% Similarity=0.074 Sum_probs=34.7
Q ss_pred CCCcEEEEEeChHHHHHHHHHHcCcccc--cccceEEeechhhhc
Q psy17377 34 GKKKVITIGHSMGTTNVLVAGSLRPEYQ--SKISLSILWAQAAFL 76 (106)
Q Consensus 34 ~~~~~~lvGHSmGg~i~l~~~~~~p~~~--~~v~~~v~~~P~~~~ 76 (106)
+.+++.++||||||.+++.++..+|+.. .++..++++.|+...
T Consensus 124 d~~~v~l~GHS~GG~iA~~lA~~~~~~~~~~~v~ali~ldPv~g~ 168 (313)
T PLN00021 124 DLSKLALAGHSRGGKTAFALALGKAAVSLPLKFSALIGLDPVDGT 168 (313)
T ss_pred ChhheEEEEECcchHHHHHHHhhccccccccceeeEEeecccccc
Confidence 3468999999999999999999888653 367788888887543
No 72
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=97.88 E-value=2.3e-05 Score=54.00 Aligned_cols=57 Identities=23% Similarity=0.310 Sum_probs=42.7
Q ss_pred cccHHHHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccc
Q psy17377 19 IYDTTATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~ 78 (106)
..|+.+.++++.+.. +.+++.++|||+||.+++..+..+|++. ++.+..+|+.....
T Consensus 45 ~~D~~~~i~~l~~~~~iD~~ri~i~G~S~GG~~a~~~~~~~~~~f---~a~v~~~g~~d~~~ 103 (213)
T PF00326_consen 45 VDDVVAAIEYLIKQYYIDPDRIGIMGHSYGGYLALLAATQHPDRF---KAAVAGAGVSDLFS 103 (213)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEEEEEETHHHHHHHHHHHHTCCGS---SEEEEESE-SSTTC
T ss_pred hhhHHHHHHHHhccccccceeEEEEcccccccccchhhcccceee---eeeeccceecchhc
Confidence 577777888887764 3468999999999999999999889874 44466666554433
No 73
>PRK07868 acyl-CoA synthetase; Validated
Probab=97.86 E-value=3.1e-05 Score=64.83 Aligned_cols=57 Identities=21% Similarity=0.221 Sum_probs=35.7
Q ss_pred ccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 12 VKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 12 ~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
++++++. ..+.+.++.+++.. .++++++||||||++++.+++.+++. +|..++++++
T Consensus 119 ~~l~~~i-~~l~~~l~~v~~~~-~~~v~lvG~s~GG~~a~~~aa~~~~~--~v~~lvl~~~ 175 (994)
T PRK07868 119 RNLADHV-VALSEAIDTVKDVT-GRDVHLVGYSQGGMFCYQAAAYRRSK--DIASIVTFGS 175 (994)
T ss_pred CCHHHHH-HHHHHHHHHHHHhh-CCceEEEEEChhHHHHHHHHHhcCCC--ccceEEEEec
Confidence 3444443 24444555555444 36899999999999999999865431 3444454443
No 74
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=97.86 E-value=3.1e-05 Score=67.86 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=37.8
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
++...+..+++.++.++++++||||||.+++.++.++|+++++ ++++++
T Consensus 1430 ~~a~~l~~ll~~l~~~~v~LvGhSmGG~iAl~~A~~~P~~V~~---lVlis~ 1478 (1655)
T PLN02980 1430 LVADLLYKLIEHITPGKVTLVGYSMGARIALYMALRFSDKIEG---AVIISG 1478 (1655)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEECHHHHHHHHHHHhChHhhCE---EEEECC
Confidence 3445555566777889999999999999999999999987554 455543
No 75
>KOG1552|consensus
Probab=97.83 E-value=3.5e-05 Score=55.66 Aligned_cols=54 Identities=22% Similarity=0.282 Sum_probs=46.3
Q ss_pred cccHHHHHHHHHHHhC-CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 19 IYDTTATIDYVLNVTG-KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~-~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
.+|+.++.+.+++..| .+++++.|+|+|+...+.+|++.| +.++|+.+|.....
T Consensus 112 y~Di~avye~Lr~~~g~~~~Iil~G~SiGt~~tv~Lasr~~-----~~alVL~SPf~S~~ 166 (258)
T KOG1552|consen 112 YADIKAVYEWLRNRYGSPERIILYGQSIGTVPTVDLASRYP-----LAAVVLHSPFTSGM 166 (258)
T ss_pred hhhHHHHHHHHHhhcCCCceEEEEEecCCchhhhhHhhcCC-----cceEEEeccchhhh
Confidence 6899999999999884 789999999999999999999987 45678888876543
No 76
>PF05990 DUF900: Alpha/beta hydrolase of unknown function (DUF900); InterPro: IPR010297 This domain is associated with proteins of unknown function, which are hydrolase-like.
Probab=97.83 E-value=2.5e-05 Score=55.61 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=41.4
Q ss_pred cccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCc------ccccccceEEeechhhhcc
Q psy17377 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRP------EYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p------~~~~~v~~~v~~~P~~~~~ 77 (106)
..++...++.+.+..+.+++++++||||+.+.+.....-. +...++..+++.+|-....
T Consensus 76 ~~~l~~~L~~L~~~~~~~~I~ilaHSMG~rv~~~aL~~l~~~~~~~~~~~~~~~viL~ApDid~d 140 (233)
T PF05990_consen 76 GPALARFLRDLARAPGIKRIHILAHSMGNRVLLEALRQLASEGERPDVKARFDNVILAAPDIDND 140 (233)
T ss_pred HHHHHHHHHHHHhccCCceEEEEEeCchHHHHHHHHHHHHhcccchhhHhhhheEEEECCCCCHH
Confidence 3445556666666668899999999999999887765411 2234677888888865543
No 77
>PRK10566 esterase; Provisional
Probab=97.78 E-value=3.6e-05 Score=53.86 Aligned_cols=42 Identities=14% Similarity=0.051 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHH--hCCCcEEEEEeChHHHHHHHHHHcCccc
Q psy17377 19 IYDTTATIDYVLNV--TGKKKVITIGHSMGTTNVLVAGSLRPEY 60 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~--~~~~~~~lvGHSmGg~i~l~~~~~~p~~ 60 (106)
..|+.+.++.+.+. .+.+++.++||||||.+++.+++.+|+.
T Consensus 88 ~~~~~~~~~~l~~~~~~~~~~i~v~G~S~Gg~~al~~~~~~~~~ 131 (249)
T PRK10566 88 MQEFPTLRAAIREEGWLLDDRLAVGGASMGGMTALGIMARHPWV 131 (249)
T ss_pred HHHHHHHHHHHHhcCCcCccceeEEeecccHHHHHHHHHhCCCe
Confidence 35666667776654 2457899999999999999999888864
No 78
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=97.77 E-value=5.6e-05 Score=57.85 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=36.1
Q ss_pred HHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 24 ATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 24 ~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
++++++.+.. +.+++.++||||||.+++.+++.+|++ ++++++++|+.
T Consensus 251 avld~l~~~~~vd~~ri~l~G~S~GG~~Al~~A~~~p~r---i~a~V~~~~~~ 300 (414)
T PRK05077 251 AVLNALPNVPWVDHTRVAAFGFRFGANVAVRLAYLEPPR---LKAVACLGPVV 300 (414)
T ss_pred HHHHHHHhCcccCcccEEEEEEChHHHHHHHHHHhCCcC---ceEEEEECCcc
Confidence 4555554432 457899999999999999999988875 55666777764
No 79
>PF01764 Lipase_3: Lipase (class 3); InterPro: IPR002921 Triglyceride lipases are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. This family of lipases have been called Class 3 as they are not closely related to other lipase families.; GO: 0004806 triglyceride lipase activity, 0006629 lipid metabolic process; PDB: 1LGY_A 1DTE_A 1DT5_F 4DYH_B 1DU4_C 4EA6_B 1GT6_B 1EIN_A 1DT3_A 1TIB_A ....
Probab=97.70 E-value=9e-05 Score=47.75 Aligned_cols=35 Identities=14% Similarity=0.199 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcC
Q psy17377 23 TATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLR 57 (106)
Q Consensus 23 ~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~ 57 (106)
...++.+.+.....++.+.|||+||.++..++...
T Consensus 51 ~~~l~~~~~~~~~~~i~itGHSLGGalA~l~a~~l 85 (140)
T PF01764_consen 51 LDALKELVEKYPDYSIVITGHSLGGALASLAAADL 85 (140)
T ss_dssp HHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCccchhhccchHHHHHHHHHHhh
Confidence 34444455555557899999999999999888753
No 80
>PF08538 DUF1749: Protein of unknown function (DUF1749); InterPro: IPR013744 This is a plant and fungal family of unknown function. This family contains many hypothetical proteins. ; PDB: 2Q0X_B.
Probab=97.68 E-value=0.00011 Score=54.38 Aligned_cols=63 Identities=21% Similarity=0.280 Sum_probs=45.8
Q ss_pred cccHHHHHHHHHHHh----CCCcEEEEEeChHHHHHHHHHHcCcc--cccccceEEeechhhhccccch
Q psy17377 19 IYDTTATIDYVLNVT----GKKKVITIGHSMGTTNVLVAGSLRPE--YQSKISLSILWAQAAFLGHMHM 81 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~----~~~~~~lvGHSmGg~i~l~~~~~~p~--~~~~v~~~v~~~P~~~~~~~~~ 81 (106)
..|+.++|++++... +.+|++|+|||=|..-++.|+..... ...+|.+.|+.+|+........
T Consensus 87 ~~eI~~~v~ylr~~~~g~~~~~kIVLmGHSTGcQdvl~Yl~~~~~~~~~~~VdG~ILQApVSDREa~~~ 155 (303)
T PF08538_consen 87 VEEIAQLVEYLRSEKGGHFGREKIVLMGHSTGCQDVLHYLSSPNPSPSRPPVDGAILQAPVSDREAILN 155 (303)
T ss_dssp HHHHHHHHHHHHHHS------S-EEEEEECCHHHHHHHHHHH-TT---CCCEEEEEEEEE---TTSTTT
T ss_pred HHHHHHHHHHHHHhhccccCCccEEEEecCCCcHHHHHHHhccCccccccceEEEEEeCCCCChhHhhh
Confidence 588889999998873 67899999999999999999986432 2467999999999987665444
No 81
>PRK05855 short chain dehydrogenase; Validated
Probab=97.68 E-value=9.9e-05 Score=57.23 Aligned_cols=47 Identities=15% Similarity=0.167 Sum_probs=31.1
Q ss_pred HHHHHHHHHHhCCCc-EEEEEeChHHHHHHHHHHcCcccccccceEEee
Q psy17377 23 TATIDYVLNVTGKKK-VITIGHSMGTTNVLVAGSLRPEYQSKISLSILW 70 (106)
Q Consensus 23 ~~~i~~v~~~~~~~~-~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~ 70 (106)
.+.+..+++..+.++ ++++||||||.+++.++.. |+...++..++.+
T Consensus 80 a~dl~~~i~~l~~~~~~~lvGhS~Gg~~a~~~a~~-~~~~~~v~~~~~~ 127 (582)
T PRK05855 80 ADDFAAVIDAVSPDRPVHLLAHDWGSIQGWEAVTR-PRAAGRIASFTSV 127 (582)
T ss_pred HHHHHHHHHHhCCCCcEEEEecChHHHHHHHHHhC-ccchhhhhhheec
Confidence 344444555566555 9999999999999888766 5544455444433
No 82
>KOG2564|consensus
Probab=97.65 E-value=4.2e-05 Score=56.26 Aligned_cols=44 Identities=20% Similarity=0.275 Sum_probs=29.8
Q ss_pred cccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHc
Q psy17377 11 LVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 11 ~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
+++.+.++ .|+.++++++-.. ..+++++|||||||.++...+..
T Consensus 123 dlS~eT~~-KD~~~~i~~~fge-~~~~iilVGHSmGGaIav~~a~~ 166 (343)
T KOG2564|consen 123 DLSLETMS-KDFGAVIKELFGE-LPPQIILVGHSMGGAIAVHTAAS 166 (343)
T ss_pred hcCHHHHH-HHHHHHHHHHhcc-CCCceEEEeccccchhhhhhhhh
Confidence 35555554 5655555554432 34689999999999999766654
No 83
>PF11288 DUF3089: Protein of unknown function (DUF3089); InterPro: IPR021440 This family of proteins has no known function.
Probab=97.64 E-value=0.0001 Score=51.90 Aligned_cols=56 Identities=23% Similarity=0.361 Sum_probs=42.1
Q ss_pred ccccccHHHHHHHHHHHhCC-CcEEEEEeChHHHHHHHHHHcC----cccccccceEEeech
Q psy17377 16 EIGIYDTTATIDYVLNVTGK-KKVITIGHSMGTTNVLVAGSLR----PEYQSKISLSILWAQ 72 (106)
Q Consensus 16 ~~~~~Dl~~~i~~v~~~~~~-~~~~lvGHSmGg~i~l~~~~~~----p~~~~~v~~~v~~~P 72 (106)
+.+..|+.+.-++.+++.+. .+++|+|||+|+.+...++.++ | ..+++++.-+++-
T Consensus 74 ~~ay~DV~~AF~~yL~~~n~GRPfILaGHSQGs~~l~~LL~e~~~~~p-l~~rLVAAYliG~ 134 (207)
T PF11288_consen 74 DLAYSDVRAAFDYYLANYNNGRPFILAGHSQGSMHLLRLLKEEIAGDP-LRKRLVAAYLIGY 134 (207)
T ss_pred HhhHHHHHHHHHHHHHhcCCCCCEEEEEeChHHHHHHHHHHHHhcCch-HHhhhheeeecCc
Confidence 45677888888887776644 5899999999999999998764 4 5667776555553
No 84
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=97.63 E-value=0.00015 Score=52.51 Aligned_cols=57 Identities=21% Similarity=0.320 Sum_probs=42.7
Q ss_pred ccccHHHHHHHHHH----H---h--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 18 GIYDTTATIDYVLN----V---T--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 18 ~~~Dl~~~i~~v~~----~---~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
..+++...|++..+ . . ...+++++|||.|+.+++..+.+.++...+|+..+++-|+.
T Consensus 57 ~~~sL~~QI~hk~~~i~~~~~~~~~~~~~liLiGHSIGayi~levl~r~~~~~~~V~~~~lLfPTi 122 (266)
T PF10230_consen 57 RLFSLQDQIEHKIDFIKELIPQKNKPNVKLILIGHSIGAYIALEVLKRLPDLKFRVKKVILLFPTI 122 (266)
T ss_pred CccCHHHHHHHHHHHHHHHhhhhcCCCCcEEEEeCcHHHHHHHHHHHhccccCCceeEEEEeCCcc
Confidence 45777777666222 1 1 35689999999999999999999885455787888888865
No 85
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=97.63 E-value=7.3e-05 Score=51.98 Aligned_cols=69 Identities=19% Similarity=0.220 Sum_probs=52.7
Q ss_pred ccccccccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCc-ccccccceEEeechhh
Q psy17377 6 ETYMILVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRP-EYQSKISLSILWAQAA 74 (106)
Q Consensus 6 ~~~~w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p-~~~~~v~~~v~~~P~~ 74 (106)
-+-||.-.-.+-...|+.+++++..++-+.+++.|||+|+|+-+.-....+-| ...++|..+++++|..
T Consensus 38 l~Yfw~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGYSFGADvlP~~~nrLp~~~r~~v~~v~Ll~p~~ 107 (192)
T PF06057_consen 38 LRYFWSERTPEQTAADLARIIRHYRARWGRKRVVLIGYSFGADVLPFIYNRLPAALRARVAQVVLLSPST 107 (192)
T ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHHHhCCceEEEEeecCCchhHHHHHhhCCHHHHhheeEEEEeccCC
Confidence 34566544444446888899999888889999999999999977766666655 5577888888888754
No 86
>PF06821 Ser_hydrolase: Serine hydrolase; InterPro: IPR010662 This family contains a number of hypothetical bacterial proteins of unknown function, which may be cytosolic. The Crystal Structure Of The Yden Gene Product Swiss:P96671 from B. Subtilis has been solved. The structure shows an alpha-beta hydrolase fold suggesting an enzymatic function for these proteins [].; GO: 0016787 hydrolase activity; PDB: 3BDV_B 2QS9_A 1UXO_A.
Probab=97.63 E-value=0.00014 Score=49.48 Aligned_cols=55 Identities=18% Similarity=0.117 Sum_probs=38.5
Q ss_pred cccHHHHHHHHHHHhC--CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 19 IYDTTATIDYVLNVTG--KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~--~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
.-++.+.+..+.+... .+++++||||+|+..++.+++ .+...+|.+++++||..-
T Consensus 36 ~P~~~~W~~~l~~~i~~~~~~~ilVaHSLGc~~~l~~l~--~~~~~~v~g~lLVAp~~~ 92 (171)
T PF06821_consen 36 NPDLDEWVQALDQAIDAIDEPTILVAHSLGCLTALRWLA--EQSQKKVAGALLVAPFDP 92 (171)
T ss_dssp S--HHHHHHHHHHCCHC-TTTEEEEEETHHHHHHHHHHH--HTCCSSEEEEEEES--SC
T ss_pred CCCHHHHHHHHHHHHhhcCCCeEEEEeCHHHHHHHHHHh--hcccccccEEEEEcCCCc
Confidence 4566677777666532 246899999999999999996 233457888999999754
No 87
>COG4782 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.62 E-value=0.00011 Score=55.55 Aligned_cols=73 Identities=18% Similarity=0.125 Sum_probs=51.6
Q ss_pred Ccccccccccc----ccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHH----HcCcc-cccccceEEeechhhh
Q psy17377 5 YETYMILVKFH----EIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAG----SLRPE-YQSKISLSILWAQAAF 75 (106)
Q Consensus 5 ~~~~~w~~s~~----~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~----~~~p~-~~~~v~~~v~~~P~~~ 75 (106)
|+...-+|.+| +.+..+++..+.++.+....+++++++||||+-+.+..+ .+.++ ...|+...++.+|-..
T Consensus 156 S~g~l~~Yn~DreS~~~Sr~aLe~~lr~La~~~~~~~I~ilAHSMGtwl~~e~LrQLai~~~~~l~~ki~nViLAaPDiD 235 (377)
T COG4782 156 SRGSLLGYNYDRESTNYSRPALERLLRYLATDKPVKRIYLLAHSMGTWLLMEALRQLAIRADRPLPAKIKNVILAAPDID 235 (377)
T ss_pred CCCeeeecccchhhhhhhHHHHHHHHHHHHhCCCCceEEEEEecchHHHHHHHHHHHhccCCcchhhhhhheEeeCCCCC
Confidence 44555566665 334566777888888888889999999999999977544 23334 5667888888888554
Q ss_pred cc
Q psy17377 76 LG 77 (106)
Q Consensus 76 ~~ 77 (106)
..
T Consensus 236 ~D 237 (377)
T COG4782 236 VD 237 (377)
T ss_pred hh
Confidence 43
No 88
>PRK11460 putative hydrolase; Provisional
Probab=97.56 E-value=0.00018 Score=50.76 Aligned_cols=37 Identities=24% Similarity=0.302 Sum_probs=27.4
Q ss_pred HHHHHHHhCC--CcEEEEEeChHHHHHHHHHHcCccccc
Q psy17377 26 IDYVLNVTGK--KKVITIGHSMGTTNVLVAGSLRPEYQS 62 (106)
Q Consensus 26 i~~v~~~~~~--~~~~lvGHSmGg~i~l~~~~~~p~~~~ 62 (106)
++.+.++.+. +++.++||||||.+++.++..+|+...
T Consensus 91 i~~~~~~~~~~~~~i~l~GfS~Gg~~al~~a~~~~~~~~ 129 (232)
T PRK11460 91 VRYWQQQSGVGASATALIGFSQGAIMALEAVKAEPGLAG 129 (232)
T ss_pred HHHHHHhcCCChhhEEEEEECHHHHHHHHHHHhCCCcce
Confidence 3333444443 589999999999999999988887544
No 89
>PF00151 Lipase: Lipase; InterPro: IPR013818 Triglyceride lipases (3.1.1.3 from EC) are lipolytic enzymes that hydrolyse ester linkages of triglycerides []. Lipases are widely distributed in animals, plants and prokaryotes. At least three tissue-specific isozymes exist in higher vertebrates, pancreatic, hepatic and gastric/lingual. These lipases are closely related to each other and to lipoprotein lipase (3.1.1.34 from EC), which hydrolyses triglycerides of chylomicrons and very low density lipoproteins (VLDL) []. The most conserved region in all these proteins is centred around a serine residue which has been shown [] to participate, with an histidine and an aspartic acid residue, in a charge relay system. Such a region is also present in lipases of prokaryotic origin and in lecithin-cholesterol acyltransferase (2.3.1.43 from EC) (LCAT) [], which catalyzes fatty acid transfer between phosphatidylcholine and cholesterol.; PDB: 1LPB_B 1LPA_B 1N8S_A 1GPL_A 1W52_X 2PVS_B 2OXE_B 1BU8_A 2PPL_A 1ETH_A ....
Probab=97.56 E-value=0.00029 Score=52.66 Aligned_cols=54 Identities=20% Similarity=0.205 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 21 DTTATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 21 Dl~~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
.++.++..+.+.. ..+++++||||+|+.++-..+..... ..+|..++.+.|+.-
T Consensus 133 ~la~~l~~L~~~~g~~~~~ihlIGhSLGAHvaG~aG~~~~~-~~ki~rItgLDPAgP 188 (331)
T PF00151_consen 133 QLAKFLSFLINNFGVPPENIHLIGHSLGAHVAGFAGKYLKG-GGKIGRITGLDPAGP 188 (331)
T ss_dssp HHHHHHHHHHHHH---GGGEEEEEETCHHHHHHHHHHHTTT----SSEEEEES-B-T
T ss_pred HHHHHHHHHHhhcCCChhHEEEEeeccchhhhhhhhhhccC-cceeeEEEecCcccc
Confidence 3444555555433 45799999999999999988877655 334555566666553
No 90
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=97.51 E-value=0.00018 Score=50.47 Aligned_cols=32 Identities=22% Similarity=0.220 Sum_probs=23.7
Q ss_pred HHHHHHHhCCCcEEEEEeChHHHHHHHHHHcC
Q psy17377 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLR 57 (106)
Q Consensus 26 i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~ 57 (106)
+...+++....++.+.|||+||.+|..++...
T Consensus 118 ~~~~~~~~p~~~i~vtGHSLGGaiA~l~a~~l 149 (229)
T cd00519 118 LKSALKQYPDYKIIVTGHSLGGALASLLALDL 149 (229)
T ss_pred HHHHHhhCCCceEEEEccCHHHHHHHHHHHHH
Confidence 33344433456899999999999999888753
No 91
>PF00975 Thioesterase: Thioesterase domain; InterPro: IPR001031 Thioesterase domains often occur integrated in or associated with peptide synthetases which are involved in the non-ribosomal synthesis of peptide antibiotics []. Thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates.; GO: 0016788 hydrolase activity, acting on ester bonds, 0009058 biosynthetic process; PDB: 2RON_A 2K2Q_B 3LCR_B 2HFJ_B 1MNQ_A 1MN6_B 1MNA_B 2HFK_B 2H7Y_B 2H7X_A ....
Probab=97.50 E-value=0.0003 Score=48.55 Aligned_cols=52 Identities=13% Similarity=0.039 Sum_probs=33.8
Q ss_pred ccHHHHHHH----HHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeec
Q psy17377 20 YDTTATIDY----VLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWA 71 (106)
Q Consensus 20 ~Dl~~~i~~----v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~ 71 (106)
.++.++++. +++.....++.++|||+||.+|+..|.+--+.-.++..++++.
T Consensus 46 ~si~~la~~y~~~I~~~~~~gp~~L~G~S~Gg~lA~E~A~~Le~~G~~v~~l~liD 101 (229)
T PF00975_consen 46 DSIEELASRYAEAIRARQPEGPYVLAGWSFGGILAFEMARQLEEAGEEVSRLILID 101 (229)
T ss_dssp SSHHHHHHHHHHHHHHHTSSSSEEEEEETHHHHHHHHHHHHHHHTT-SESEEEEES
T ss_pred CCHHHHHHHHHHHhhhhCCCCCeeehccCccHHHHHHHHHHHHHhhhccCceEEec
Confidence 444444444 4444444599999999999999999976433334455555555
No 92
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=97.48 E-value=0.00011 Score=50.34 Aligned_cols=63 Identities=21% Similarity=0.196 Sum_probs=48.4
Q ss_pred cccccccccHHHHHHHHHHH-----hCCCcEEEEEeChHHHHHHHHHHcCccc-ccccceEEeechhhhc
Q psy17377 13 KFHEIGIYDTTATIDYVLNV-----TGKKKVITIGHSMGTTNVLVAGSLRPEY-QSKISLSILWAQAAFL 76 (106)
Q Consensus 13 s~~~~~~~Dl~~~i~~v~~~-----~~~~~~~lvGHSmGg~i~l~~~~~~p~~-~~~v~~~v~~~P~~~~ 76 (106)
++.+. ..|+.+.++++++. .+.++++++|+|.||.+++.++....+. ..++..+++++|+..+
T Consensus 44 ~~p~~-~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SAGg~la~~~~~~~~~~~~~~~~~~~~~~p~~d~ 112 (211)
T PF07859_consen 44 PFPAA-LEDVKAAYRWLLKNADKLGIDPERIVLIGDSAGGHLALSLALRARDRGLPKPKGIILISPWTDL 112 (211)
T ss_dssp STTHH-HHHHHHHHHHHHHTHHHHTEEEEEEEEEEETHHHHHHHHHHHHHHHTTTCHESEEEEESCHSST
T ss_pred ccccc-ccccccceeeeccccccccccccceEEeecccccchhhhhhhhhhhhcccchhhhhcccccccc
Confidence 34443 57888888888887 5567999999999999999999764443 2357788899997655
No 93
>COG1075 LipA Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]
Probab=97.46 E-value=0.00024 Score=53.08 Aligned_cols=56 Identities=27% Similarity=0.219 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccc
Q psy17377 22 TTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78 (106)
Q Consensus 22 l~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~ 78 (106)
+-+.|+.++..++.+++.++||||||.+...++...+.. .+|...+.++++-....
T Consensus 113 l~~~V~~~l~~~ga~~v~LigHS~GG~~~ry~~~~~~~~-~~V~~~~tl~tp~~Gt~ 168 (336)
T COG1075 113 LFAYVDEVLAKTGAKKVNLIGHSMGGLDSRYYLGVLGGA-NRVASVVTLGTPHHGTE 168 (336)
T ss_pred HHHHHHHHHhhcCCCceEEEeecccchhhHHHHhhcCcc-ceEEEEEEeccCCCCch
Confidence 344566677778899999999999999999888887743 45667777776655444
No 94
>PF00756 Esterase: Putative esterase; InterPro: IPR000801 This family contains several seemingly unrelated proteins, including human esterase D; mycobacterial antigen 85, which is responsible for the high affinity of mycobacteria to fibronectin; Corynebacterium glutamicum major secreted protein PS1; and hypothetical proteins from Escherichia coli, yeast, mycobacteria and Haemophilus influenzae.; PDB: 3LS2_A 1VA5_B 1DQZ_B 3HRH_A 1DQY_A 2GZR_A 2GZS_A 3GFF_A 1R88_A 3E4D_D ....
Probab=97.40 E-value=0.00026 Score=49.73 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=28.1
Q ss_pred EEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 38 VITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 38 ~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
..+.||||||..++.++.++|+...++ +++||.
T Consensus 117 ~~i~G~S~GG~~Al~~~l~~Pd~F~~~---~~~S~~ 149 (251)
T PF00756_consen 117 RAIAGHSMGGYGALYLALRHPDLFGAV---IAFSGA 149 (251)
T ss_dssp EEEEEETHHHHHHHHHHHHSTTTESEE---EEESEE
T ss_pred eEEeccCCCcHHHHHHHHhCccccccc---cccCcc
Confidence 699999999999999999999986655 466654
No 95
>KOG1838|consensus
Probab=97.33 E-value=0.00075 Score=51.79 Aligned_cols=58 Identities=12% Similarity=0.087 Sum_probs=47.3
Q ss_pred cccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhc
Q psy17377 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFL 76 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~ 76 (106)
+.|+.+++++++++....++..+|.||||.+..-|+++..+...-+.+....+|...+
T Consensus 181 t~Dl~~~v~~i~~~~P~a~l~avG~S~Gg~iL~nYLGE~g~~~~l~~a~~v~~Pwd~~ 238 (409)
T KOG1838|consen 181 TEDLREVVNHIKKRYPQAPLFAVGFSMGGNILTNYLGEEGDNTPLIAAVAVCNPWDLL 238 (409)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEecchHHHHHHHhhhccCCCCceeEEEEeccchhh
Confidence 7899999999999998899999999999999999999977655333344456676643
No 96
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=97.29 E-value=0.00081 Score=47.69 Aligned_cols=45 Identities=22% Similarity=0.202 Sum_probs=36.8
Q ss_pred ccHHHHHHHHHHHhCC--CcEEEEEeChHHHHHHHHHHcCccccccc
Q psy17377 20 YDTTATIDYVLNVTGK--KKVITIGHSMGTTNVLVAGSLRPEYQSKI 64 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~--~~~~lvGHSmGg~i~l~~~~~~p~~~~~v 64 (106)
..+.++|+++.++.++ .++++.|+|.||.++..+++.+|+++..+
T Consensus 79 ~~i~~lv~~v~~~~~iD~~RVyv~G~S~Gg~ma~~la~~~pd~faa~ 125 (220)
T PF10503_consen 79 AFIAALVDYVAARYNIDPSRVYVTGLSNGGMMANVLACAYPDLFAAV 125 (220)
T ss_pred hhHHHHHHhHhhhcccCCCceeeEEECHHHHHHHHHHHhCCccceEE
Confidence 3466778887776654 58999999999999999999999986654
No 97
>PF08840 BAAT_C: BAAT / Acyl-CoA thioester hydrolase C terminal; InterPro: IPR014940 Acyl-CoA thioesterases are a group of enzymes that catalyse the hydrolysis of acyl-CoAs to the free fatty acid and coenzyme A (CoASH), providing the potential to regulate intracellular levels of acyl-CoAs, free fatty acids and CoASH. Bile acid-CoA:amino acid N-acetyltransferase (BAAT) is involved in bile acid metabolism and may also act as an acyl-CoA thioesterase that regulates intracellular levels of free fatty acids []. This entry represents a catalytic domain is found at the C terminus of acyl-CoA thioester hydrolases and bile acid-CoA:amino acid N-acetyltransferases. ; PDB: 3K2I_B 3HLK_B.
Probab=97.20 E-value=0.0009 Score=46.88 Aligned_cols=52 Identities=23% Similarity=0.242 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCC--CcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 22 TTATIDYVLNVTGK--KKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 22 l~~~i~~v~~~~~~--~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
+...++++.++... +++.++|.|.||-+++.+++.+|+ |.++|.++|.....
T Consensus 6 fe~Ai~~L~~~p~v~~~~Igi~G~SkGaelALllAs~~~~----i~avVa~~ps~~~~ 59 (213)
T PF08840_consen 6 FEEAIDWLKSHPEVDPDKIGIIGISKGAELALLLASRFPQ----ISAVVAISPSSVVF 59 (213)
T ss_dssp HHHHHHHHHCSTTB--SSEEEEEETHHHHHHHHHHHHSSS----EEEEEEES--SB--
T ss_pred HHHHHHHHHhCCCCCCCCEEEEEECHHHHHHHHHHhcCCC----ccEEEEeCCceeEe
Confidence 45678888776554 599999999999999999999983 55667777755433
No 98
>COG0400 Predicted esterase [General function prediction only]
Probab=97.20 E-value=0.00061 Score=47.93 Aligned_cols=50 Identities=22% Similarity=0.274 Sum_probs=36.6
Q ss_pred HHHHHHHHHHhCC--CcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 23 TATIDYVLNVTGK--KKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 23 ~~~i~~v~~~~~~--~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
.+.++...++.+. ++++++|+|+|+.+++....++|+...++ ++++|..-
T Consensus 84 ~~~l~~~~~~~gi~~~~ii~~GfSqGA~ial~~~l~~~~~~~~a---il~~g~~~ 135 (207)
T COG0400 84 AEFLEELAEEYGIDSSRIILIGFSQGANIALSLGLTLPGLFAGA---ILFSGMLP 135 (207)
T ss_pred HHHHHHHHHHhCCChhheEEEecChHHHHHHHHHHhCchhhccc---hhcCCcCC
Confidence 3344445556666 79999999999999999999999865544 45555443
No 99
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=97.19 E-value=0.0011 Score=52.41 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=40.5
Q ss_pred cccHHHHHHHHHHHh-CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 19 IYDTTATIDYVLNVT-GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~-~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
..|+.++++++.+.. ...++.++|||+||.+++.+++.+|+. +++++..++..
T Consensus 79 ~~D~~~~i~~l~~q~~~~~~v~~~G~S~GG~~a~~~a~~~~~~---l~aiv~~~~~~ 132 (550)
T TIGR00976 79 AADGYDLVDWIAKQPWCDGNVGMLGVSYLAVTQLLAAVLQPPA---LRAIAPQEGVW 132 (550)
T ss_pred chHHHHHHHHHHhCCCCCCcEEEEEeChHHHHHHHHhccCCCc---eeEEeecCccc
Confidence 588888999887652 225899999999999999999988864 55555555543
No 100
>COG3208 GrsT Predicted thioesterase involved in non-ribosomal peptide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.18 E-value=0.00092 Score=48.07 Aligned_cols=45 Identities=22% Similarity=0.163 Sum_probs=34.9
Q ss_pred ccccccccHHHHHHHHHHHhC----CCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 14 FHEIGIYDTTATIDYVLNVTG----KKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 14 ~~~~~~~Dl~~~i~~v~~~~~----~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
+.+-...|+.++++.+.++.. .+++.+.||||||++++..+.+..
T Consensus 48 ~~ep~~~di~~Lad~la~el~~~~~d~P~alfGHSmGa~lAfEvArrl~ 96 (244)
T COG3208 48 FGEPLLTDIESLADELANELLPPLLDAPFALFGHSMGAMLAFEVARRLE 96 (244)
T ss_pred cCCcccccHHHHHHHHHHHhccccCCCCeeecccchhHHHHHHHHHHHH
Confidence 344456888888888877665 247899999999999999997643
No 101
>PF06342 DUF1057: Alpha/beta hydrolase of unknown function (DUF1057); InterPro: IPR010463 This entry consists of proteins of unknown function which have an alpha/beta hydrolase fold.
Probab=97.17 E-value=0.0019 Score=47.56 Aligned_cols=55 Identities=25% Similarity=0.343 Sum_probs=44.2
Q ss_pred cccHHHHHHHHHHHhCCC-cEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccc
Q psy17377 19 IYDTTATIDYVLNVTGKK-KVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~-~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~ 78 (106)
..+-...++.+++.++++ ++.++|||.|+..++..++.+| +.++++++|++...+
T Consensus 86 n~er~~~~~~ll~~l~i~~~~i~~gHSrGcenal~la~~~~-----~~g~~lin~~G~r~H 141 (297)
T PF06342_consen 86 NEERQNFVNALLDELGIKGKLIFLGHSRGCENALQLAVTHP-----LHGLVLINPPGLRPH 141 (297)
T ss_pred hHHHHHHHHHHHHHcCCCCceEEEEeccchHHHHHHHhcCc-----cceEEEecCCccccc
Confidence 344556777788888764 7889999999999999999985 458889999886555
No 102
>PLN00413 triacylglycerol lipase
Probab=97.01 E-value=0.0011 Score=51.82 Aligned_cols=38 Identities=18% Similarity=0.331 Sum_probs=29.8
Q ss_pred ccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHH
Q psy17377 18 GIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 18 ~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~ 55 (106)
+.|.+...+..+++.....++++.|||+||++|..+++
T Consensus 266 ayy~i~~~Lk~ll~~~p~~kliVTGHSLGGALAtLaA~ 303 (479)
T PLN00413 266 AYYTILRHLKEIFDQNPTSKFILSGHSLGGALAILFTA 303 (479)
T ss_pred hHHHHHHHHHHHHHHCCCCeEEEEecCHHHHHHHHHHH
Confidence 34556666777776666678999999999999998875
No 103
>PLN02517 phosphatidylcholine-sterol O-acyltransferase
Probab=97.00 E-value=0.0008 Score=53.92 Aligned_cols=54 Identities=22% Similarity=0.278 Sum_probs=39.4
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcC-----------cc-cccccceEEeechh
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLR-----------PE-YQSKISLSILWAQA 73 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~-----------p~-~~~~v~~~v~~~P~ 73 (106)
..+...|+...+..+-+|++++|||||+.+++.++... ++ ..+.|...|.++|+
T Consensus 197 ~rLK~lIE~ay~~nggkKVVLV~HSMGglv~lyFL~wv~~~~~~gG~gG~~W~dKyI~s~I~Iagp 262 (642)
T PLN02517 197 SRLKSNIELMVATNGGKKVVVVPHSMGVLYFLHFMKWVEAPAPMGGGGGPGWCAKHIKAVMNIGGP 262 (642)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEEeCCchHHHHHHHHhccccccccCCcchHHHHHHHHHheecccc
Confidence 34667777777766678999999999999999888642 22 23456677777764
No 104
>COG1647 Esterase/lipase [General function prediction only]
Probab=96.98 E-value=0.0016 Score=46.50 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=30.6
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
.+.+.+.++|-||||.+++.++..+| ++.++.+++....+
T Consensus 82 ~gy~eI~v~GlSmGGv~alkla~~~p-----~K~iv~m~a~~~~k 121 (243)
T COG1647 82 AGYDEIAVVGLSMGGVFALKLAYHYP-----PKKIVPMCAPVNVK 121 (243)
T ss_pred cCCCeEEEEeecchhHHHHHHHhhCC-----ccceeeecCCcccc
Confidence 47899999999999999999999987 33345555544433
No 105
>PF05728 UPF0227: Uncharacterised protein family (UPF0227); InterPro: IPR008886 Despite being classed as uncharacterised proteins, the members of this family are almost certainly enzymes in that they contain a domain distantly related to IPR000073 from INTERPRO. One of the members of this family YqiA has been shown to be a esterase []. Other members, which include the Escherichia coli (strain K12) YcfP protein are uncharacterised.
Probab=96.97 E-value=0.0024 Score=44.20 Aligned_cols=48 Identities=15% Similarity=0.107 Sum_probs=34.4
Q ss_pred HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccc
Q psy17377 25 TIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78 (106)
Q Consensus 25 ~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~ 78 (106)
.++.+++....+.+.+||+||||..+..++.+++- .. +++.|+.....
T Consensus 48 ~l~~~i~~~~~~~~~liGSSlGG~~A~~La~~~~~-----~a-vLiNPav~p~~ 95 (187)
T PF05728_consen 48 QLEQLIEELKPENVVLIGSSLGGFYATYLAERYGL-----PA-VLINPAVRPYE 95 (187)
T ss_pred HHHHHHHhCCCCCeEEEEEChHHHHHHHHHHHhCC-----CE-EEEcCCCCHHH
Confidence 44455555555669999999999999998877652 22 57888776543
No 106
>PF01083 Cutinase: Cutinase; InterPro: IPR000675 Aerial plant organs are protected by a cuticle composed of an insoluble polymeric structural compound, cutin, which is a polyester composed of hydroxy and hydroxyepoxy fatty acids []. Plant pathogenic fungi produce extracellular degradative enzymes [] that play an important role in pathogenesis. They include cutinase, which hydrolyses cutin, facilitating fungus penetration through the cuticle. Inhibition of the enzyme can prevent fungal infection through intact cuticles. Cutin monomers released from the cuticle by small amounts of cutinase on fungal spore surfaces can greatly increase the amount of cutinase secreted by the spore, the mechanism for which process is as yet unknown [, ]. Cutinase is a serine esterase containing the classical Ser, His, Asp triad of serine hydrolases []. The protein belongs to the alpha-beta class, with a central beta-sheet of 5 parallel strands covered by 5 helices on either side of the sheet. The active site cleft is partly covered by 2 thin bridges formed by amino acid side chains, by contrast with the hydrophobic lid possessed by other lipases []. The protein also contains 2 disulphide bridges, which are essential for activity, their cleavage resulting in complete loss of enzymatic activity []. Two cutinase-like proteins (MtCY39.35 and MtCY339.08c) have been found in the genome of the bacteria Mycobacterium tuberculosis.; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 1XZK_A 1XZA_A 1CUD_C 1XZI_A 1XZH_A 1CUF_A 1FFD_A 2CUT_A 1FFA_A 1CUA_A ....
Probab=96.96 E-value=0.0019 Score=44.19 Aligned_cols=56 Identities=20% Similarity=0.163 Sum_probs=39.7
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHc---CcccccccceEEeechhhh
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSL---RPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~---~p~~~~~v~~~v~~~P~~~ 75 (106)
.++...++...++-...|+.++|+|+|+.++...+.. .+...++|..+++++-+..
T Consensus 65 ~~~~~~i~~~~~~CP~~kivl~GYSQGA~V~~~~~~~~~l~~~~~~~I~avvlfGdP~~ 123 (179)
T PF01083_consen 65 ANLVRLIEEYAARCPNTKIVLAGYSQGAMVVGDALSGDGLPPDVADRIAAVVLFGDPRR 123 (179)
T ss_dssp HHHHHHHHHHHHHSTTSEEEEEEETHHHHHHHHHHHHTTSSHHHHHHEEEEEEES-TTT
T ss_pred HHHHHHHHHHHHhCCCCCEEEEecccccHHHHHHHHhccCChhhhhhEEEEEEecCCcc
Confidence 4445555555555456799999999999999999877 3345678888888775444
No 107
>PLN02162 triacylglycerol lipase
Probab=96.96 E-value=0.0012 Score=51.58 Aligned_cols=36 Identities=22% Similarity=0.250 Sum_probs=26.5
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHH
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~ 55 (106)
+.+.+.++..+++....++++.|||+||++|..+++
T Consensus 262 ~~I~~~L~~lL~k~p~~kliVTGHSLGGALAtLaAa 297 (475)
T PLN02162 262 YTIRQMLRDKLARNKNLKYILTGHSLGGALAALFPA 297 (475)
T ss_pred HHHHHHHHHHHHhCCCceEEEEecChHHHHHHHHHH
Confidence 344455555555555568999999999999998765
No 108
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=96.96 E-value=0.0021 Score=44.62 Aligned_cols=36 Identities=17% Similarity=0.128 Sum_probs=28.1
Q ss_pred CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 34 GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 34 ~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
..+++++.|.||||.+++.++.++|+... +++.++.
T Consensus 103 ~~~ri~l~GFSQGa~~al~~~l~~p~~~~---gvv~lsG 138 (216)
T PF02230_consen 103 DPSRIFLGGFSQGAAMALYLALRYPEPLA---GVVALSG 138 (216)
T ss_dssp -GGGEEEEEETHHHHHHHHHHHCTSSTSS---EEEEES-
T ss_pred ChhheehhhhhhHHHHHHHHHHHcCcCcC---EEEEeec
Confidence 44689999999999999999999998644 4455553
No 109
>PF11187 DUF2974: Protein of unknown function (DUF2974); InterPro: IPR024499 This family of proteins has no known function.
Probab=96.95 E-value=0.0023 Score=45.44 Aligned_cols=40 Identities=28% Similarity=0.285 Sum_probs=29.4
Q ss_pred cEEEEEeChHHHHHHHHHHcCc-ccccccceEEeechhhhc
Q psy17377 37 KVITIGHSMGTTNVLVAGSLRP-EYQSKISLSILWAQAAFL 76 (106)
Q Consensus 37 ~~~lvGHSmGg~i~l~~~~~~p-~~~~~v~~~v~~~P~~~~ 76 (106)
++.+.|||.||.+|...++..+ +..++|..+.....++..
T Consensus 85 ~i~v~GHSkGGnLA~yaa~~~~~~~~~rI~~vy~fDgPGf~ 125 (224)
T PF11187_consen 85 KIYVTGHSKGGNLAQYAAANCDDEIQDRISKVYSFDGPGFS 125 (224)
T ss_pred CEEEEEechhhHHHHHHHHHccHHHhhheeEEEEeeCCCCC
Confidence 5999999999999998888754 345567766655544433
No 110
>COG0627 Predicted esterase [General function prediction only]
Probab=96.93 E-value=0.00059 Score=50.82 Aligned_cols=63 Identities=14% Similarity=0.122 Sum_probs=42.3
Q ss_pred ccccccccccHHHHHHHHHHHhCC-CcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 12 VKFHEIGIYDTTATIDYVLNVTGK-KKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 12 ~s~~~~~~~Dl~~~i~~v~~~~~~-~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
+.|+.+...++|+.++.--..... ++-.++||||||.=++.+|+.+|++...+ ..++|+....
T Consensus 127 ~q~~tfl~~ELP~~~~~~f~~~~~~~~~aI~G~SMGG~GAl~lA~~~pd~f~~~---sS~Sg~~~~s 190 (316)
T COG0627 127 YQWETFLTQELPALWEAAFPADGTGDGRAIAGHSMGGYGALKLALKHPDRFKSA---SSFSGILSPS 190 (316)
T ss_pred cchhHHHHhhhhHHHHHhcCcccccCCceeEEEeccchhhhhhhhhCcchhcee---cccccccccc
Confidence 455566666677666543222211 37899999999999999999999775544 4555655444
No 111
>PRK10162 acetyl esterase; Provisional
Probab=96.92 E-value=0.0014 Score=48.31 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=40.9
Q ss_pred cccHHHHHHHHHH---HhC--CCcEEEEEeChHHHHHHHHHHcCccc---ccccceEEeechhhhc
Q psy17377 19 IYDTTATIDYVLN---VTG--KKKVITIGHSMGTTNVLVAGSLRPEY---QSKISLSILWAQAAFL 76 (106)
Q Consensus 19 ~~Dl~~~i~~v~~---~~~--~~~~~lvGHSmGg~i~l~~~~~~p~~---~~~v~~~v~~~P~~~~ 76 (106)
..|+.+.++++.+ ..+ .+++.++|||+||.+++..+....+. ..++..++++.|....
T Consensus 132 ~~D~~~a~~~l~~~~~~~~~d~~~i~l~G~SaGG~la~~~a~~~~~~~~~~~~~~~~vl~~p~~~~ 197 (318)
T PRK10162 132 IEEIVAVCCYFHQHAEDYGINMSRIGFAGDSAGAMLALASALWLRDKQIDCGKVAGVLLWYGLYGL 197 (318)
T ss_pred HHHHHHHHHHHHHhHHHhCCChhHEEEEEECHHHHHHHHHHHHHHhcCCCccChhheEEECCccCC
Confidence 4677777777654 344 35899999999999999888753322 1356677788886544
No 112
>COG4814 Uncharacterized protein with an alpha/beta hydrolase fold [General function prediction only]
Probab=96.90 E-value=0.0012 Score=47.92 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 22 TTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 22 l~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
+..++.++.++.+.+++..|||||||.-...|+..+.
T Consensus 122 lk~~msyL~~~Y~i~k~n~VGhSmGg~~~~~Y~~~yg 158 (288)
T COG4814 122 LKKAMSYLQKHYNIPKFNAVGHSMGGLGLTYYMIDYG 158 (288)
T ss_pred HHHHHHHHHHhcCCceeeeeeeccccHHHHHHHHHhc
Confidence 3456677778889999999999999999999998654
No 113
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=96.86 E-value=0.0019 Score=45.32 Aligned_cols=20 Identities=35% Similarity=0.388 Sum_probs=16.6
Q ss_pred CcEEEEEeChHHHHHHHHHH
Q psy17377 36 KKVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 36 ~~~~lvGHSmGg~i~l~~~~ 55 (106)
.++++|||||||.++-.+..
T Consensus 78 ~~IsfIgHSLGGli~r~al~ 97 (217)
T PF05057_consen 78 RKISFIGHSLGGLIARYALG 97 (217)
T ss_pred ccceEEEecccHHHHHHHHH
Confidence 48999999999999765554
No 114
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=96.83 E-value=0.00077 Score=48.57 Aligned_cols=48 Identities=17% Similarity=0.253 Sum_probs=39.8
Q ss_pred ccccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 10 ILVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 10 w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
-.+++.|.+..|+++.++...+...-.+...||||+||.+.-.+. ++|
T Consensus 79 ~~~~~~DwA~~D~~aal~~~~~~~~~~P~y~vgHS~GGqa~gL~~-~~~ 126 (281)
T COG4757 79 SQWRYLDWARLDFPAALAALKKALPGHPLYFVGHSFGGQALGLLG-QHP 126 (281)
T ss_pred CccchhhhhhcchHHHHHHHHhhCCCCceEEeeccccceeecccc-cCc
Confidence 346788999999999999999988777999999999998765444 445
No 115
>PF07224 Chlorophyllase: Chlorophyllase; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=96.82 E-value=0.0017 Score=47.53 Aligned_cols=57 Identities=18% Similarity=0.072 Sum_probs=42.4
Q ss_pred ccHHHHHHHHHHHh----------CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 20 YDTTATIDYVLNVT----------GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~----------~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
.+.+++++.+.+.+ +..|+.++|||.||.+++..|..+. ..-++.+++.+.|+.-..
T Consensus 94 ~~aa~V~~WL~~gL~~~Lp~~V~~nl~klal~GHSrGGktAFAlALg~a-~~lkfsaLIGiDPV~G~~ 160 (307)
T PF07224_consen 94 KSAASVINWLPEGLQHVLPENVEANLSKLALSGHSRGGKTAFALALGYA-TSLKFSALIGIDPVAGTS 160 (307)
T ss_pred HHHHHHHHHHHhhhhhhCCCCcccccceEEEeecCCccHHHHHHHhccc-ccCchhheecccccCCCC
Confidence 55566666654432 4578999999999999999998765 334677888889987544
No 116
>PLN02454 triacylglycerol lipase
Probab=96.80 E-value=0.0027 Score=48.96 Aligned_cols=36 Identities=25% Similarity=0.312 Sum_probs=25.2
Q ss_pred cHHHHHHHHHHHhCCCc--EEEEEeChHHHHHHHHHHc
Q psy17377 21 DTTATIDYVLNVTGKKK--VITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~--~~lvGHSmGg~i~l~~~~~ 56 (106)
++-+.|..+++....++ +++.|||+||++|+..|..
T Consensus 211 qvl~~V~~l~~~Yp~~~~sI~vTGHSLGGALAtLaA~d 248 (414)
T PLN02454 211 QLLAKIKELLERYKDEKLSIVLTGHSLGASLATLAAFD 248 (414)
T ss_pred HHHHHHHHHHHhCCCCCceEEEEecCHHHHHHHHHHHH
Confidence 34444555555444444 9999999999999998854
No 117
>smart00824 PKS_TE Thioesterase. Peptide synthetases are involved in the non-ribosomal synthesis of peptide antibiotics. Next to the operons encoding these enzymes, in almost all cases, are genes that encode proteins that have similarity to the type II fatty acid thioesterases of vertebrates. There are also modules within the peptide synthetases that also share this similarity. With respect to antibiotic production, thioesterases are required for the addition of the last amino acid to the peptide antibiotic, thereby forming a cyclic antibiotic. Thioesterases (non-integrated) have molecular masses of 25-29 kDa.
Probab=96.78 E-value=0.005 Score=41.02 Aligned_cols=43 Identities=19% Similarity=0.218 Sum_probs=28.5
Q ss_pred HHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeec
Q psy17377 29 VLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWA 71 (106)
Q Consensus 29 v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~ 71 (106)
+.+.....++.++|||+||.++...+....+...++..++++.
T Consensus 57 l~~~~~~~~~~l~g~s~Gg~~a~~~a~~l~~~~~~~~~l~~~~ 99 (212)
T smart00824 57 VLRAAGGRPFVLVGHSSGGLLAHAVAARLEARGIPPAAVVLLD 99 (212)
T ss_pred HHHhcCCCCeEEEEECHHHHHHHHHHHHHHhCCCCCcEEEEEc
Confidence 4444456689999999999999888876433223344444443
No 118
>PF03096 Ndr: Ndr family; InterPro: IPR004142 This family consists of proteins from different gene families: Ndr1/RTP/Drg1, Ndr2, and Ndr3. Their similarity was previously noted []. The precise molecular and cellular function of members of this family is still unknown, yet they are known to be involved in cellular differentiation events. The Ndr1 group was the first to be discovered. Their expression is repressed by the proto-oncogenes N-myc and c-myc, and in line with this observation, Ndr1 protein expression is down-regulated in neoplastic cells, and is reactivated when differentiation is induced by chemicals such as retinoic acid. Ndr2 and Ndr3 expression is not under the control of N-myc or c-myc. Ndr1 expression is also activated by several chemicals: tunicamycin and homocysteine induce Ndr1 in human umbilical endothelial cells; nickel induces Ndr1 in several cell types. Members of this family are found in wide variety of multicellular eukaryotes, including an Ndr1 type protein in Helianthus annuus (Common sunflower), known as Sf21. Interestingly, the highest scoring matches in the noise are all alpha/beta hydrolases (IPR000073 from INTERPRO), suggesting that this family may have an enzymatic function.; PDB: 2QMQ_A 2XMR_B 2XMQ_B 2XMS_A.
Probab=96.78 E-value=0.0038 Score=45.92 Aligned_cols=54 Identities=22% Similarity=0.183 Sum_probs=41.7
Q ss_pred cccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
..++++++..|++.++.+.++.+|=-.|+.|...+|..+|++ +.++++++|...
T Consensus 82 md~LAe~l~~Vl~~f~lk~vIg~GvGAGAnIL~rfAl~~p~~---V~GLiLvn~~~~ 135 (283)
T PF03096_consen 82 MDQLAEMLPEVLDHFGLKSVIGFGVGAGANILARFALKHPER---VLGLILVNPTCT 135 (283)
T ss_dssp HHHHHCTHHHHHHHHT---EEEEEETHHHHHHHHHHHHSGGG---EEEEEEES---S
T ss_pred HHHHHHHHHHHHHhCCccEEEEEeeccchhhhhhccccCccc---eeEEEEEecCCC
Confidence 356667888888999999999999999999999999999986 667788888654
No 119
>KOG3724|consensus
Probab=96.75 E-value=0.0023 Score=52.71 Aligned_cols=35 Identities=31% Similarity=0.404 Sum_probs=23.5
Q ss_pred cEEEEEeChHHHHHHHHHHcCcccccccceEEeec
Q psy17377 37 KVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWA 71 (106)
Q Consensus 37 ~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~ 71 (106)
.+++|||||||.++...+....++...|..++.++
T Consensus 183 sVILVGHSMGGiVAra~~tlkn~~~~sVntIITls 217 (973)
T KOG3724|consen 183 SVILVGHSMGGIVARATLTLKNEVQGSVNTIITLS 217 (973)
T ss_pred eEEEEeccchhHHHHHHHhhhhhccchhhhhhhhc
Confidence 48999999999999877754324444455444443
No 120
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=96.75 E-value=0.0033 Score=48.35 Aligned_cols=50 Identities=16% Similarity=0.083 Sum_probs=36.0
Q ss_pred HHHHhCCCcEEEEEeChHHHHHHHHHHcCcccc--cccceEEeechhhhcccc
Q psy17377 29 VLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQ--SKISLSILWAQAAFLGHM 79 (106)
Q Consensus 29 v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~--~~v~~~v~~~P~~~~~~~ 79 (106)
.++..|.+ ++++|+||||..++.+++...+.. .+++.+++++.+......
T Consensus 162 ~i~~~G~~-v~l~GvCqgG~~~laa~Al~a~~~~p~~~~sltlm~~PID~~~~ 213 (406)
T TIGR01849 162 FIRFLGPD-IHVIAVCQPAVPVLAAVALMAENEPPAQPRSMTLMGGPIDARAS 213 (406)
T ss_pred HHHHhCCC-CcEEEEchhhHHHHHHHHHHHhcCCCCCcceEEEEecCccCCCC
Confidence 33555766 999999999999999988875542 257787876665555443
No 121
>PLN02934 triacylglycerol lipase
Probab=96.71 E-value=0.0022 Score=50.49 Aligned_cols=37 Identities=19% Similarity=0.377 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHH
Q psy17377 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~ 55 (106)
.+.+...++.+++.....++++.|||+||++|..+++
T Consensus 304 y~~v~~~lk~ll~~~p~~kIvVTGHSLGGALAtLaA~ 340 (515)
T PLN02934 304 YYAVRSKLKSLLKEHKNAKFVVTGHSLGGALAILFPT 340 (515)
T ss_pred HHHHHHHHHHHHHHCCCCeEEEeccccHHHHHHHHHH
Confidence 3445566666666666679999999999999998875
No 122
>KOG2369|consensus
Probab=96.64 E-value=0.0028 Score=49.36 Aligned_cols=40 Identities=30% Similarity=0.334 Sum_probs=33.1
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcc
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~ 59 (106)
..+...||...+..|-+|+++|+||||+.+.+.+....+.
T Consensus 166 ~kLK~~iE~~~~~~G~kkVvlisHSMG~l~~lyFl~w~~~ 205 (473)
T KOG2369|consen 166 SKLKKKIETMYKLNGGKKVVLISHSMGGLYVLYFLKWVEA 205 (473)
T ss_pred HHHHHHHHHHHHHcCCCceEEEecCCccHHHHHHHhcccc
Confidence 4455667777776777899999999999999999988776
No 123
>PLN02571 triacylglycerol lipase
Probab=96.64 E-value=0.0048 Score=47.56 Aligned_cols=35 Identities=11% Similarity=0.195 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHhCCC--cEEEEEeChHHHHHHHHHHc
Q psy17377 22 TTATIDYVLNVTGKK--KVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 22 l~~~i~~v~~~~~~~--~~~lvGHSmGg~i~l~~~~~ 56 (106)
+-+.|..+++....+ ++++.||||||++|...|..
T Consensus 210 vl~eV~~L~~~y~~e~~sI~VTGHSLGGALAtLaA~d 246 (413)
T PLN02571 210 VLNEVGRLVEKYKDEEISITICGHSLGAALATLNAVD 246 (413)
T ss_pred HHHHHHHHHHhcCcccccEEEeccchHHHHHHHHHHH
Confidence 334444444443322 68999999999999988864
No 124
>COG3319 Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.61 E-value=0.0043 Score=45.04 Aligned_cols=48 Identities=10% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 26 i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
++.+++.-...++.++|||+||.+++..|.+--..-+.|..++++.++
T Consensus 55 v~~Ir~~QP~GPy~L~G~S~GG~vA~evA~qL~~~G~~Va~L~llD~~ 102 (257)
T COG3319 55 VAAIRRVQPEGPYVLLGWSLGGAVAFEVAAQLEAQGEEVAFLGLLDAV 102 (257)
T ss_pred HHHHHHhCCCCCEEEEeeccccHHHHHHHHHHHhCCCeEEEEEEeccC
Confidence 444555555669999999999999999997633333455555555543
No 125
>KOG3101|consensus
Probab=96.59 E-value=0.00013 Score=51.94 Aligned_cols=41 Identities=24% Similarity=0.130 Sum_probs=31.9
Q ss_pred CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccc
Q psy17377 35 KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78 (106)
Q Consensus 35 ~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~ 78 (106)
..++.+.||||||.=++..+.++|.+ .+++-+++|+....+
T Consensus 140 ~~k~~IfGHSMGGhGAl~~~Lkn~~k---ykSvSAFAPI~NP~~ 180 (283)
T KOG3101|consen 140 PLKVGIFGHSMGGHGALTIYLKNPSK---YKSVSAFAPICNPIN 180 (283)
T ss_pred chhcceeccccCCCceEEEEEcCccc---ccceeccccccCccc
Confidence 34788999999999999998888874 445567788776544
No 126
>KOG2931|consensus
Probab=96.58 E-value=0.0059 Score=45.27 Aligned_cols=53 Identities=23% Similarity=0.189 Sum_probs=46.2
Q ss_pred cccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
-.|+++++..|++.++.+.++.+|--.|+.|...+|..+|++ |.++|++.+..
T Consensus 105 md~LAd~l~~VL~~f~lk~vIg~GvGAGAyIL~rFAl~hp~r---V~GLvLIn~~~ 157 (326)
T KOG2931|consen 105 MDDLADMLPEVLDHFGLKSVIGMGVGAGAYILARFALNHPER---VLGLVLINCDP 157 (326)
T ss_pred HHHHHHHHHHHHHhcCcceEEEecccccHHHHHHHHhcChhh---eeEEEEEecCC
Confidence 368889999999999999999999999999999999999987 55667776644
No 127
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=96.51 E-value=0.0084 Score=45.05 Aligned_cols=60 Identities=12% Similarity=0.008 Sum_probs=43.2
Q ss_pred cccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 15 HEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 15 ~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
++..+.|+..++++++++....++..+|.|+||.+...|..+..+...-..+....+|..
T Consensus 127 h~G~t~D~~~~l~~l~~~~~~r~~~avG~SLGgnmLa~ylgeeg~d~~~~aa~~vs~P~D 186 (345)
T COG0429 127 HSGETEDIRFFLDWLKARFPPRPLYAVGFSLGGNMLANYLGEEGDDLPLDAAVAVSAPFD 186 (345)
T ss_pred cccchhHHHHHHHHHHHhCCCCceEEEEecccHHHHHHHHHhhccCcccceeeeeeCHHH
Confidence 344568999999999998888899999999999887778877554332222333455543
No 128
>PLN02847 triacylglycerol lipase
Probab=96.49 E-value=0.0047 Score=49.60 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=28.0
Q ss_pred CCCcEEEEEeChHHHHHHHHHHc---CcccccccceEEeechhhhcc
Q psy17377 34 GKKKVITIGHSMGTTNVLVAGSL---RPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 34 ~~~~~~lvGHSmGg~i~l~~~~~---~p~~~~~v~~~v~~~P~~~~~ 77 (106)
..-++.++|||+||.+|..++.. ++.. ..+. ++.++|...+.
T Consensus 249 PdYkLVITGHSLGGGVAALLAilLRe~~~f-ssi~-CyAFgPp~cvS 293 (633)
T PLN02847 249 PDFKIKIVGHSLGGGTAALLTYILREQKEF-SSTT-CVTFAPAACMT 293 (633)
T ss_pred CCCeEEEeccChHHHHHHHHHHHHhcCCCC-CCce-EEEecCchhcC
Confidence 34589999999999999887764 2222 2333 45677765543
No 129
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=96.45 E-value=0.0074 Score=43.02 Aligned_cols=51 Identities=24% Similarity=0.411 Sum_probs=38.4
Q ss_pred ccccHHHHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 18 GIYDTTATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 18 ~~~Dl~~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
...|+.+.++++.+.. ..+++.++|.||||.+++.++...|+ +++.+.+-|
T Consensus 92 ~~~d~~a~~~~L~~~~~~~~~~ig~~GfC~GG~~a~~~a~~~~~----v~a~v~fyg 144 (236)
T COG0412 92 VLADIDAALDYLARQPQVDPKRIGVVGFCMGGGLALLAATRAPE----VKAAVAFYG 144 (236)
T ss_pred HHHHHHHHHHHHHhCCCCCCceEEEEEEcccHHHHHHhhcccCC----ccEEEEecC
Confidence 3577888888877654 34679999999999999999988773 444454444
No 130
>KOG2984|consensus
Probab=96.44 E-value=0.00055 Score=48.61 Aligned_cols=50 Identities=20% Similarity=0.432 Sum_probs=40.0
Q ss_pred HHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccccch
Q psy17377 29 VLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMHM 81 (106)
Q Consensus 29 v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~~~~ 81 (106)
+.+.+..++++++|+|-||.+++..|+++++.++++ +.++..++..+...
T Consensus 107 LM~aLk~~~fsvlGWSdGgiTalivAak~~e~v~rm---iiwga~ayvn~~~~ 156 (277)
T KOG2984|consen 107 LMEALKLEPFSVLGWSDGGITALIVAAKGKEKVNRM---IIWGAAAYVNHLGA 156 (277)
T ss_pred HHHHhCCCCeeEeeecCCCeEEEEeeccChhhhhhh---eeecccceecchhH
Confidence 466688999999999999999999999999987666 45666666655433
No 131
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=96.37 E-value=0.0051 Score=42.49 Aligned_cols=50 Identities=18% Similarity=0.317 Sum_probs=35.3
Q ss_pred cccHHHHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 19 IYDTTATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
..|+.+.++++.+.. +.+++.++|+|+||.+++.++...| .+.+.+..-|
T Consensus 79 ~~~~~aa~~~l~~~~~~~~~kig~vGfc~GG~~a~~~a~~~~----~~~a~v~~yg 130 (218)
T PF01738_consen 79 AADLQAAVDYLRAQPEVDPGKIGVVGFCWGGKLALLLAARDP----RVDAAVSFYG 130 (218)
T ss_dssp HHHHHHHHHHHHCTTTCEEEEEEEEEETHHHHHHHHHHCCTT----TSSEEEEES-
T ss_pred HHHHHHHHHHHHhccccCCCcEEEEEEecchHHhhhhhhhcc----ccceEEEEcC
Confidence 456666677776654 3469999999999999999887763 3445555555
No 132
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=96.33 E-value=0.0045 Score=45.08 Aligned_cols=43 Identities=26% Similarity=0.306 Sum_probs=34.0
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccc
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~ 78 (106)
++.++-.++|||+||.+++.....+|+...+. .++||.....+
T Consensus 134 ~~~~~~~i~GhSlGGLfvl~aLL~~p~~F~~y---~~~SPSlWw~n 176 (264)
T COG2819 134 TNSERTAIIGHSLGGLFVLFALLTYPDCFGRY---GLISPSLWWHN 176 (264)
T ss_pred cCcccceeeeecchhHHHHHHHhcCcchhcee---eeecchhhhCC
Confidence 45567899999999999999999999875544 57888765544
No 133
>PF12740 Chlorophyllase2: Chlorophyllase enzyme; InterPro: IPR010821 This family consists of several chlorophyllase proteins (3.1.1.14 from EC). Chlorophyllase (Chlase) is the first enzyme involved in chlorophyll degradation and catalyses the hydrolysis of the ester bond to yield chlorophyllide and phytol [, , ].; GO: 0047746 chlorophyllase activity, 0015996 chlorophyll catabolic process
Probab=96.32 E-value=0.0042 Score=45.14 Aligned_cols=56 Identities=18% Similarity=0.201 Sum_probs=40.2
Q ss_pred cccHHHHHHHHHHH----------hCCCcEEEEEeChHHHHHHHHHHcCc--ccccccceEEeechhh
Q psy17377 19 IYDTTATIDYVLNV----------TGKKKVITIGHSMGTTNVLVAGSLRP--EYQSKISLSILWAQAA 74 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~----------~~~~~~~lvGHSmGg~i~l~~~~~~p--~~~~~v~~~v~~~P~~ 74 (106)
..++.++++.+.+. .+..++.+.|||.||.+++..+..+- ....++++++++.|+.
T Consensus 64 ~~~~~~vi~Wl~~~L~~~l~~~v~~D~s~l~l~GHSrGGk~Af~~al~~~~~~~~~~~~ali~lDPVd 131 (259)
T PF12740_consen 64 VASAAEVIDWLAKGLESKLPLGVKPDFSKLALAGHSRGGKVAFAMALGNASSSLDLRFSALILLDPVD 131 (259)
T ss_pred HHHHHHHHHHHHhcchhhccccccccccceEEeeeCCCCHHHHHHHhhhcccccccceeEEEEecccc
Confidence 34555566664432 24568999999999999998887752 2234688889999988
No 134
>COG3545 Predicted esterase of the alpha/beta hydrolase fold [General function prediction only]
Probab=96.31 E-value=0.012 Score=40.47 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=37.7
Q ss_pred cccHHHHHHHHHHHhC-CC-cEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 19 IYDTTATIDYVLNVTG-KK-KVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~-~~-~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
.-++...++.+-++.. .+ ++++|+||+|+.++..++..... +|.++.+++|..-
T Consensus 40 ~P~~~dWi~~l~~~v~a~~~~~vlVAHSLGc~~v~h~~~~~~~---~V~GalLVAppd~ 95 (181)
T COG3545 40 APVLDDWIARLEKEVNAAEGPVVLVAHSLGCATVAHWAEHIQR---QVAGALLVAPPDV 95 (181)
T ss_pred CCCHHHHHHHHHHHHhccCCCeEEEEecccHHHHHHHHHhhhh---ccceEEEecCCCc
Confidence 3444455555443322 23 49999999999999999976432 7888889998753
No 135
>KOG4840|consensus
Probab=96.23 E-value=0.0023 Score=46.03 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=46.3
Q ss_pred cccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 11 LVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 11 ~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
.++..+- ..|+...++++...-..+++.++|||-|..-.+.|. .+....+++++.|+.+|+....
T Consensus 83 t~slk~D-~edl~~l~~Hi~~~~fSt~vVL~GhSTGcQdi~yYl-Tnt~~~r~iraaIlqApVSDrE 147 (299)
T KOG4840|consen 83 TFSLKDD-VEDLKCLLEHIQLCGFSTDVVLVGHSTGCQDIMYYL-TNTTKDRKIRAAILQAPVSDRE 147 (299)
T ss_pred ccccccc-HHHHHHHHHHhhccCcccceEEEecCccchHHHHHH-HhccchHHHHHHHHhCccchhh
Confidence 3444444 366677777665554456999999999999999888 3333345788888999998665
No 136
>PLN02408 phospholipase A1
Probab=96.23 E-value=0.0076 Score=45.81 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCC--cEEEEEeChHHHHHHHHHHc
Q psy17377 25 TIDYVLNVTGKK--KVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 25 ~i~~v~~~~~~~--~~~lvGHSmGg~i~l~~~~~ 56 (106)
.|..+++....+ ++++.|||+||.+|...+..
T Consensus 187 eI~~ll~~y~~~~~sI~vTGHSLGGALAtLaA~d 220 (365)
T PLN02408 187 EIARLLQSYGDEPLSLTITGHSLGAALATLTAYD 220 (365)
T ss_pred HHHHHHHhcCCCCceEEEeccchHHHHHHHHHHH
Confidence 344444443332 58999999999999988865
No 137
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=96.10 E-value=0.0083 Score=46.13 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=30.2
Q ss_pred CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 34 GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 34 ~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
+.++..+.|+||||..++..+.++|+...++ +.+||.
T Consensus 286 d~~~~~IaG~S~GGl~AL~~al~~Pd~Fg~v---~s~Sgs 322 (411)
T PRK10439 286 DADRTVVAGQSFGGLAALYAGLHWPERFGCV---LSQSGS 322 (411)
T ss_pred CccceEEEEEChHHHHHHHHHHhCcccccEE---EEeccc
Confidence 3457889999999999999999999986655 456654
No 138
>PRK10252 entF enterobactin synthase subunit F; Provisional
Probab=95.99 E-value=0.014 Score=49.70 Aligned_cols=53 Identities=11% Similarity=-0.004 Sum_probs=33.7
Q ss_pred ccHHHHHHHHHH---HhC-CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 20 YDTTATIDYVLN---VTG-KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 20 ~Dl~~~i~~v~~---~~~-~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
+++.++++.+.+ ... ..+++++||||||.+++.++.+.++...++..++++.+
T Consensus 1113 ~~l~~la~~~~~~i~~~~~~~p~~l~G~S~Gg~vA~e~A~~l~~~~~~v~~l~l~~~ 1169 (1296)
T PRK10252 1113 TSLDEVCEAHLATLLEQQPHGPYHLLGYSLGGTLAQGIAARLRARGEEVAFLGLLDT 1169 (1296)
T ss_pred CCHHHHHHHHHHHHHhhCCCCCEEEEEechhhHHHHHHHHHHHHcCCceeEEEEecC
Confidence 455555544332 222 34899999999999999999864433344555555543
No 139
>PLN02324 triacylglycerol lipase
Probab=95.88 E-value=0.016 Score=44.72 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCC--CcEEEEEeChHHHHHHHHHHc
Q psy17377 24 ATIDYVLNVTGK--KKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 24 ~~i~~v~~~~~~--~~~~lvGHSmGg~i~l~~~~~ 56 (106)
+.|..+++.... .++++.|||+||++|...|..
T Consensus 201 ~eV~~L~~~Yp~e~~sItvTGHSLGGALAtLaA~d 235 (415)
T PLN02324 201 GELKRLLELYKNEEISITFTGHSLGAVMSVLSAAD 235 (415)
T ss_pred HHHHHHHHHCCCCCceEEEecCcHHHHHHHHHHHH
Confidence 334444443332 268999999999999988854
No 140
>PF03959 FSH1: Serine hydrolase (FSH1); InterPro: IPR005645 This entry represents proteins belonging to the AB hydrolase family. It consists of serine hydrolases of unknown specificity [, ] and includes uncharacterised proteins.; PDB: 1YCD_A.
Probab=95.88 E-value=0.011 Score=41.15 Aligned_cols=66 Identities=9% Similarity=0.062 Sum_probs=32.5
Q ss_pred cccccccccccccHHHHHHHHHHHhCCC--cEEEEEeChHHHHHHHHHHcCcc-----cccccceEEeechhh
Q psy17377 9 MILVKFHEIGIYDTTATIDYVLNVTGKK--KVITIGHSMGTTNVLVAGSLRPE-----YQSKISLSILWAQAA 74 (106)
Q Consensus 9 ~w~~s~~~~~~~Dl~~~i~~v~~~~~~~--~~~lvGHSmGg~i~l~~~~~~p~-----~~~~v~~~v~~~P~~ 74 (106)
.|....++....++...++++.+..... -.-++|+|+||.++..+++.... ....++..|+++...
T Consensus 73 W~~~~~~~~~~~~~~~sl~~l~~~i~~~GPfdGvlGFSQGA~lAa~ll~~~~~~~~~~~~~~~kf~V~~sg~~ 145 (212)
T PF03959_consen 73 WWDPDDDDHEYEGLDESLDYLRDYIEENGPFDGVLGFSQGAALAALLLALQQRGRPDGAHPPFKFAVFISGFP 145 (212)
T ss_dssp SS---S-SGGG---HHHHHHHHHHHHHH---SEEEEETHHHHHHHHHHHHHHHHST--T----SEEEEES---
T ss_pred eeecCCCcccccCHHHHHHHHHHHHHhcCCeEEEEeecHHHHHHHHHHHHHHhhcccccCCCceEEEEEcccC
Confidence 3444433334566667666665543222 24599999999999988875322 122456666666543
No 141
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=95.84 E-value=0.0096 Score=45.33 Aligned_cols=36 Identities=22% Similarity=0.227 Sum_probs=23.2
Q ss_pred CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 35 KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 35 ~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
.+++.++|||.||++++..+...+ +++..|++.|..
T Consensus 227 ~~~i~~~GHSFGGATa~~~l~~d~----r~~~~I~LD~W~ 262 (379)
T PF03403_consen 227 LSRIGLAGHSFGGATALQALRQDT----RFKAGILLDPWM 262 (379)
T ss_dssp EEEEEEEEETHHHHHHHHHHHH-T----T--EEEEES---
T ss_pred hhheeeeecCchHHHHHHHHhhcc----CcceEEEeCCcc
Confidence 457899999999999998887652 344445555543
No 142
>KOG4569|consensus
Probab=95.81 E-value=0.016 Score=43.46 Aligned_cols=37 Identities=16% Similarity=0.187 Sum_probs=30.0
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHc
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
..+.+.++.+++...--++.+-|||+||++|...|..
T Consensus 155 ~~~~~~~~~L~~~~~~~~i~vTGHSLGgAlA~laa~~ 191 (336)
T KOG4569|consen 155 SGLDAELRRLIELYPNYSIWVTGHSLGGALASLAALD 191 (336)
T ss_pred HHHHHHHHHHHHhcCCcEEEEecCChHHHHHHHHHHH
Confidence 5566777777777666789999999999999988864
No 143
>PF05448 AXE1: Acetyl xylan esterase (AXE1); InterPro: IPR008391 This family consists of several bacterial acetyl xylan esterase proteins. Acetyl xylan esterases are enzymes that hydrolyse the ester linkages of the acetyl groups in position 2 and/or 3 of the xylose moieties of natural acetylated xylan from hardwood. These enzymes are one of the accessory enzymes which are part of the xylanolytic system, together with xylanases, beta-xylosidases, alpha-arabinofuranosidases and methylglucuronidases; these are all required for the complete hydrolysis of xylan [].; PDB: 1VLQ_H 3M81_E 3M82_D 3M83_C 3FCY_A 1ODS_F 1ODT_C 1L7A_A 3FYT_A 2XLB_F ....
Probab=95.74 E-value=0.019 Score=42.73 Aligned_cols=49 Identities=20% Similarity=0.315 Sum_probs=33.6
Q ss_pred ccHHHHHHHHHHHhC--CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 20 YDTTATIDYVLNVTG--KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~--~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
-|.-..++++..... -+++.+.|.|+||.+++..++..|. |..++..-|
T Consensus 157 ~D~~ravd~l~slpevD~~rI~v~G~SqGG~lal~~aaLd~r----v~~~~~~vP 207 (320)
T PF05448_consen 157 LDAVRAVDFLRSLPEVDGKRIGVTGGSQGGGLALAAAALDPR----VKAAAADVP 207 (320)
T ss_dssp HHHHHHHHHHHTSTTEEEEEEEEEEETHHHHHHHHHHHHSST-----SEEEEESE
T ss_pred HHHHHHHHHHHhCCCcCcceEEEEeecCchHHHHHHHHhCcc----ccEEEecCC
Confidence 344445566655443 3589999999999999999998763 554444445
No 144
>PLN02310 triacylglycerol lipase
Probab=95.74 E-value=0.019 Score=44.24 Aligned_cols=21 Identities=24% Similarity=0.336 Sum_probs=18.3
Q ss_pred CcEEEEEeChHHHHHHHHHHc
Q psy17377 36 KKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 36 ~~~~lvGHSmGg~i~l~~~~~ 56 (106)
.++++.|||+||++|+..+..
T Consensus 209 ~sI~vTGHSLGGALAtLaA~d 229 (405)
T PLN02310 209 VSLTVTGHSLGGALALLNAYE 229 (405)
T ss_pred ceEEEEcccHHHHHHHHHHHH
Confidence 479999999999999988853
No 145
>PF06259 Abhydrolase_8: Alpha/beta hydrolase; InterPro: IPR010427 This is a family of uncharacterised proteins found in Actinobacteria. Computational analysis suggests that they may belong to the alpha-beta hydrolase family of enzymes, as they are predicted to form the core secondary structures and catalytic machinery common to these proteins []. Genomic context suggests that they may function as lipases, controlling the concentration of their putative phospholipid substrates.
Probab=95.66 E-value=0.03 Score=38.48 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHHh-CCCcEEEEEeChHHHHHHHHHHcCccccccc
Q psy17377 20 YDTTATIDYVLNVT-GKKKVITIGHSMGTTNVLVAGSLRPEYQSKI 64 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~-~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v 64 (106)
.+|..+++-+.... ...++.++|||.|+.++-..+...+..++.+
T Consensus 92 ~~L~~f~~gl~a~~~~~~~~tv~GHSYGS~v~G~A~~~~~~~vddv 137 (177)
T PF06259_consen 92 PRLARFLDGLRATHGPDAHLTVVGHSYGSTVVGLAAQQGGLRVDDV 137 (177)
T ss_pred HHHHHHHHHhhhhcCCCCCEEEEEecchhHHHHHHhhhCCCCcccE
Confidence 45555666665544 4568999999999999998876645455554
No 146
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=95.59 E-value=0.034 Score=42.92 Aligned_cols=51 Identities=16% Similarity=0.230 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 22 TTATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 22 l~~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
..++++++.+.. +..++.++|-|+||..+...|..++.+ |++++.++|+++
T Consensus 245 ~~aVLd~L~~~p~VD~~RV~~~G~SfGGy~AvRlA~le~~R---lkavV~~Ga~vh 297 (411)
T PF06500_consen 245 HQAVLDYLASRPWVDHTRVGAWGFSFGGYYAVRLAALEDPR---LKAVVALGAPVH 297 (411)
T ss_dssp HHHHHHHHHHSTTEEEEEEEEEEETHHHHHHHHHHHHTTTT----SEEEEES---S
T ss_pred HHHHHHHHhcCCccChhheEEEEeccchHHHHHHHHhcccc---eeeEeeeCchHh
Confidence 456677776654 345899999999999999999877654 777788888653
No 147
>COG2945 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=95.55 E-value=0.031 Score=39.22 Aligned_cols=42 Identities=21% Similarity=0.307 Sum_probs=35.4
Q ss_pred cccHHHHHHHHHHHhCCC-cEEEEEeChHHHHHHHHHHcCccc
Q psy17377 19 IYDTTATIDYVLNVTGKK-KVITIGHSMGTTNVLVAGSLRPEY 60 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~-~~~lvGHSmGg~i~l~~~~~~p~~ 60 (106)
..|..+.++++++..... .+.+.|+|.|+.|++..+.+.|+.
T Consensus 85 ~~Da~aaldW~~~~hp~s~~~~l~GfSFGa~Ia~~la~r~~e~ 127 (210)
T COG2945 85 LEDAAAALDWLQARHPDSASCWLAGFSFGAYIAMQLAMRRPEI 127 (210)
T ss_pred HHHHHHHHHHHHhhCCCchhhhhcccchHHHHHHHHHHhcccc
Confidence 689999999998876544 447899999999999999998864
No 148
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.53 E-value=0.059 Score=40.04 Aligned_cols=47 Identities=19% Similarity=0.135 Sum_probs=39.4
Q ss_pred cccHHHHHHHHHHHhCCC--cEEEEEeChHHHHHHHHHHcCcccccccc
Q psy17377 19 IYDTTATIDYVLNVTGKK--KVITIGHSMGTTNVLVAGSLRPEYQSKIS 65 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~--~~~lvGHSmGg~i~l~~~~~~p~~~~~v~ 65 (106)
..++.++|+.+..+.+++ ++++.|.|-||.++..+++.+|+....+-
T Consensus 125 Vgflr~lva~l~~~~gidp~RVyvtGlS~GG~Ma~~lac~~p~~faa~A 173 (312)
T COG3509 125 VGFLRALVAKLVNEYGIDPARVYVTGLSNGGRMANRLACEYPDIFAAIA 173 (312)
T ss_pred HHHHHHHHHHHHHhcCcCcceEEEEeeCcHHHHHHHHHhcCccccccee
Confidence 345667788888888887 89999999999999999999999866553
No 149
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=95.52 E-value=0.017 Score=47.89 Aligned_cols=22 Identities=27% Similarity=0.205 Sum_probs=19.8
Q ss_pred CCcEEEEEeChHHHHHHHHHHc
Q psy17377 35 KKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 35 ~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
..+++++||||||.++..++..
T Consensus 554 ~~~V~~lGHSLGgiig~~~~~~ 575 (792)
T TIGR03502 554 GSKVSFLGHSLGGIVGTSFIAY 575 (792)
T ss_pred CCcEEEEecCHHHHHHHHHHHh
Confidence 4589999999999999999975
No 150
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=95.51 E-value=0.012 Score=45.00 Aligned_cols=40 Identities=18% Similarity=0.366 Sum_probs=28.8
Q ss_pred cccHHHHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 19 IYDTTATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
.+|.-..++++.... +.++|-++|+||||..++.+++..+
T Consensus 207 ~~ddmr~lDfL~slpeVD~~RIG~~GfSmGg~~a~~LaALDd 248 (390)
T PF12715_consen 207 AWDDMRALDFLASLPEVDPDRIGCMGFSMGGYRAWWLAALDD 248 (390)
T ss_dssp HHHHHHHHHHHCT-TTEEEEEEEEEEEGGGHHHHHHHHHH-T
T ss_pred HHHHHHHHHHHhcCcccCccceEEEeecccHHHHHHHHHcch
Confidence 444445666665543 3468999999999999999998855
No 151
>PLN02753 triacylglycerol lipase
Probab=95.49 E-value=0.022 Score=45.15 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=18.1
Q ss_pred CcEEEEEeChHHHHHHHHHH
Q psy17377 36 KKVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 36 ~~~~lvGHSmGg~i~l~~~~ 55 (106)
.++++.|||+||++|+..|.
T Consensus 312 ~sItVTGHSLGGALAtLaA~ 331 (531)
T PLN02753 312 LSITVTGHSLGGALAILSAY 331 (531)
T ss_pred ceEEEEccCHHHHHHHHHHH
Confidence 48999999999999998885
No 152
>PLN02802 triacylglycerol lipase
Probab=95.49 E-value=0.022 Score=44.96 Aligned_cols=20 Identities=25% Similarity=0.478 Sum_probs=17.9
Q ss_pred cEEEEEeChHHHHHHHHHHc
Q psy17377 37 KVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 37 ~~~lvGHSmGg~i~l~~~~~ 56 (106)
++++.|||+||.++...+..
T Consensus 331 sI~VTGHSLGGALAtLaA~d 350 (509)
T PLN02802 331 SITVTGHSLGAALALLVADE 350 (509)
T ss_pred eEEEeccchHHHHHHHHHHH
Confidence 68999999999999988764
No 153
>PLN02719 triacylglycerol lipase
Probab=95.40 E-value=0.025 Score=44.78 Aligned_cols=20 Identities=20% Similarity=0.370 Sum_probs=17.9
Q ss_pred cEEEEEeChHHHHHHHHHHc
Q psy17377 37 KVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 37 ~~~lvGHSmGg~i~l~~~~~ 56 (106)
++++.|||+||++|...|..
T Consensus 299 sItVTGHSLGGALAtLaA~D 318 (518)
T PLN02719 299 SITVTGHSLGGALAVLSAYD 318 (518)
T ss_pred eEEEecCcHHHHHHHHHHHH
Confidence 79999999999999988853
No 154
>PLN02761 lipase class 3 family protein
Probab=95.37 E-value=0.028 Score=44.59 Aligned_cols=19 Identities=32% Similarity=0.571 Sum_probs=17.4
Q ss_pred cEEEEEeChHHHHHHHHHH
Q psy17377 37 KVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 37 ~~~lvGHSmGg~i~l~~~~ 55 (106)
++++.|||+||++|...+.
T Consensus 295 sItVTGHSLGGALAtLaA~ 313 (527)
T PLN02761 295 SITVTGHSLGASLALVSAY 313 (527)
T ss_pred eEEEeccchHHHHHHHHHH
Confidence 6999999999999998885
No 155
>PLN03037 lipase class 3 family protein; Provisional
Probab=95.28 E-value=0.018 Score=45.58 Aligned_cols=21 Identities=24% Similarity=0.327 Sum_probs=18.2
Q ss_pred CcEEEEEeChHHHHHHHHHHc
Q psy17377 36 KKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 36 ~~~~lvGHSmGg~i~l~~~~~ 56 (106)
.++++.|||+||++|+..|..
T Consensus 318 ~SItVTGHSLGGALAtLaA~D 338 (525)
T PLN03037 318 VSLTITGHSLGGALALLNAYE 338 (525)
T ss_pred ceEEEeccCHHHHHHHHHHHH
Confidence 369999999999999988853
No 156
>PF05677 DUF818: Chlamydia CHLPS protein (DUF818); InterPro: IPR008536 This family of unknown function includes several Chlamydia CHLPS proteins and Legionella SidB proteins.
Probab=95.22 E-value=0.077 Score=40.23 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=32.9
Q ss_pred cccccccHHHHHHHHHHHh---CCCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 15 HEIGIYDTTATIDYVLNVT---GKKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 15 ~~~~~~Dl~~~i~~v~~~~---~~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
+++ ..|..+++++++++. +.+++.+-|||+||.++...+..+.
T Consensus 192 ~dL-v~~~~a~v~yL~d~~~G~ka~~Ii~yG~SLGG~Vqa~AL~~~~ 237 (365)
T PF05677_consen 192 KDL-VKDYQACVRYLRDEEQGPKAKNIILYGHSLGGGVQAEALKKEV 237 (365)
T ss_pred HHH-HHHHHHHHHHHHhcccCCChheEEEeeccccHHHHHHHHHhcc
Confidence 455 367778888888743 3478999999999999988666554
No 157
>PRK04940 hypothetical protein; Provisional
Probab=95.21 E-value=0.057 Score=37.28 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=28.9
Q ss_pred CcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccc
Q psy17377 36 KKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78 (106)
Q Consensus 36 ~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~ 78 (106)
+++.+||+|+||.-|..++.++.- + .|++.|+.....
T Consensus 60 ~~~~liGSSLGGyyA~~La~~~g~-----~-aVLiNPAv~P~~ 96 (180)
T PRK04940 60 ERPLICGVGLGGYWAERIGFLCGI-----R-QVIFNPNLFPEE 96 (180)
T ss_pred CCcEEEEeChHHHHHHHHHHHHCC-----C-EEEECCCCChHH
Confidence 578999999999999999987642 2 357888876643
No 158
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=95.08 E-value=0.033 Score=40.55 Aligned_cols=60 Identities=13% Similarity=0.100 Sum_probs=41.9
Q ss_pred cccHHHHHHHHHHHh-----CCCcEEEEEeChHHHHHHHHHHcCccc-ccccceEEeechhhhccc
Q psy17377 19 IYDTTATIDYVLNVT-----GKKKVITIGHSMGTTNVLVAGSLRPEY-QSKISLSILWAQAAFLGH 78 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~-----~~~~~~lvGHSmGg~i~l~~~~~~p~~-~~~v~~~v~~~P~~~~~~ 78 (106)
..|+.+.+.++.+.. +-+++.+.|+|.||.+++.++..-.+. .......++++|......
T Consensus 130 ~~d~~~a~~~l~~~~~~~g~dp~~i~v~GdSAGG~La~~~a~~~~~~~~~~p~~~~li~P~~d~~~ 195 (312)
T COG0657 130 LEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGGHLALALALAARDRGLPLPAAQVLISPLLDLTS 195 (312)
T ss_pred HHHHHHHHHHHHhhhHhhCCCccceEEEecCcccHHHHHHHHHHHhcCCCCceEEEEEecccCCcc
Confidence 456666777776553 256899999999999999888763322 223556678888876654
No 159
>KOG4667|consensus
Probab=95.08 E-value=0.048 Score=39.19 Aligned_cols=39 Identities=28% Similarity=0.362 Sum_probs=28.4
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcc
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~ 59 (106)
.|+..++.++.+. +..--.++|||-||.+++.|++.+++
T Consensus 90 dDL~sV~q~~s~~-nr~v~vi~gHSkGg~Vvl~ya~K~~d 128 (269)
T KOG4667|consen 90 DDLHSVIQYFSNS-NRVVPVILGHSKGGDVVLLYASKYHD 128 (269)
T ss_pred HHHHHHHHHhccC-ceEEEEEEeecCccHHHHHHHHhhcC
Confidence 5666666665542 22234689999999999999999876
No 160
>PF09752 DUF2048: Uncharacterized conserved protein (DUF2048); InterPro: IPR019149 This family of proteins has no known function.
Probab=94.75 E-value=0.061 Score=40.72 Aligned_cols=36 Identities=25% Similarity=0.224 Sum_probs=29.8
Q ss_pred HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCccc
Q psy17377 24 ATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEY 60 (106)
Q Consensus 24 ~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~ 60 (106)
+.++.+.++ |..++-+.|-||||.++.+.++..|.-
T Consensus 164 ~Ll~Wl~~~-G~~~~g~~G~SmGG~~A~laa~~~p~p 199 (348)
T PF09752_consen 164 ALLHWLERE-GYGPLGLTGISMGGHMAALAASNWPRP 199 (348)
T ss_pred HHHHHHHhc-CCCceEEEEechhHhhHHhhhhcCCCc
Confidence 344455555 889999999999999999999999875
No 161
>PF05277 DUF726: Protein of unknown function (DUF726); InterPro: IPR007941 This family consists of several uncharacterised eukaryotic proteins.
Probab=94.75 E-value=0.055 Score=40.93 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=26.8
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHcCccc--ccccceEEeec
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSLRPEY--QSKISLSILWA 71 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~~p~~--~~~v~~~v~~~ 71 (106)
.+..++++||||+|+.+.+.++..-.++ ...|..+++++
T Consensus 217 ~G~RpVtLvG~SLGarvI~~cL~~L~~~~~~~lVe~VvL~G 257 (345)
T PF05277_consen 217 QGERPVTLVGHSLGARVIYYCLLELAERKAFGLVENVVLMG 257 (345)
T ss_pred CCCCceEEEeecccHHHHHHHHHHHHhccccCeEeeEEEec
Confidence 3667899999999999988777654433 12244445554
No 162
>PF11339 DUF3141: Protein of unknown function (DUF3141); InterPro: IPR024501 This family of proteins appears to be predominantly expressed in Proteobacteria. Their function is unknown.
Probab=94.52 E-value=0.096 Score=41.75 Aligned_cols=58 Identities=17% Similarity=0.210 Sum_probs=40.7
Q ss_pred HHHHHHHHHh-CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc--ccchhh
Q psy17377 24 ATIDYVLNVT-GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG--HMHMKY 83 (106)
Q Consensus 24 ~~i~~v~~~~-~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~--~~~~~~ 83 (106)
++++.|.+.. +..|.+++|.|+||=.++++++.+|+.+-.++ +.=||..+.. ...+|+
T Consensus 127 ~Fv~~V~~~hp~~~kp~liGnCQgGWa~~mlAA~~Pd~~gplv--laGaPlsywaG~~g~nPm 187 (581)
T PF11339_consen 127 AFVEEVAERHPDAPKPNLIGNCQGGWAAMMLAALRPDLVGPLV--LAGAPLSYWAGERGDNPM 187 (581)
T ss_pred HHHHHHHHhCCCCCCceEEeccHHHHHHHHHHhcCcCccCcee--ecCCCcccccCCCCCCcH
Confidence 3455555543 34599999999999999999999999765553 3566777655 334444
No 163
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=94.38 E-value=0.1 Score=39.92 Aligned_cols=57 Identities=26% Similarity=0.300 Sum_probs=39.2
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHc--CcccccccceEEeechhhhcc
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSL--RPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~--~p~~~~~v~~~v~~~P~~~~~ 77 (106)
++.+.-+++.+..|.++++++|-|.||.+++.++.. +++....=+.++++||.+.+.
T Consensus 180 qlv~~Y~~Lv~~~G~~nI~LmGDSAGGnL~Ls~LqyL~~~~~~~~Pk~~iLISPWv~l~ 238 (374)
T PF10340_consen 180 QLVATYDYLVESEGNKNIILMGDSAGGNLALSFLQYLKKPNKLPYPKSAILISPWVNLV 238 (374)
T ss_pred HHHHHHHHHHhccCCCeEEEEecCccHHHHHHHHHHHhhcCCCCCCceeEEECCCcCCc
Confidence 334445566656688999999999999999887753 211111123578999988776
No 164
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=94.32 E-value=0.072 Score=41.04 Aligned_cols=59 Identities=12% Similarity=0.009 Sum_probs=43.3
Q ss_pred CCccccccccccccccccHHHHHHHHHHHhC----CCcEEEEEeChHHHHHHHHHHcCccccccc
Q psy17377 4 LYETYMILVKFHEIGIYDTTATIDYVLNVTG----KKKVITIGHSMGTTNVLVAGSLRPEYQSKI 64 (106)
Q Consensus 4 ~~~~~~w~~s~~~~~~~Dl~~~i~~v~~~~~----~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v 64 (106)
|+.+||=+|.+ |..-|+-.++.++.+... --+++++|+|-||.++...+.-.|..++.|
T Consensus 150 P~n~EYQN~GI--MqAiD~INAl~~l~k~~~~~~~~lp~I~~G~s~G~yla~l~~k~aP~~~~~~ 212 (403)
T PF11144_consen 150 PPNGEYQNFGI--MQAIDIINALLDLKKIFPKNGGGLPKIYIGSSHGGYLAHLCAKIAPWLFDGV 212 (403)
T ss_pred CCchhhhhhHH--HHHHHHHHHHHHHHHhhhcccCCCcEEEEecCcHHHHHHHHHhhCccceeEE
Confidence 45666755555 445677777777776542 138999999999999999999999875533
No 165
>PRK05371 x-prolyl-dipeptidyl aminopeptidase; Provisional
Probab=94.32 E-value=0.16 Score=42.18 Aligned_cols=53 Identities=23% Similarity=0.075 Sum_probs=39.5
Q ss_pred ccccHHHHHHHHHHHhC----------------CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechh
Q psy17377 18 GIYDTTATIDYVLNVTG----------------KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73 (106)
Q Consensus 18 ~~~Dl~~~i~~v~~~~~----------------~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~ 73 (106)
...|..+.|+.+..+.. -.++-++|.|+||.+++..|+..|.. +++++..++.
T Consensus 304 E~~D~~~vIeWl~~~~~~~~d~~~~~~~kq~WsnGkVGm~G~SY~G~~~~~aAa~~pp~---LkAIVp~a~i 372 (767)
T PRK05371 304 EIESMKAVIDWLNGRATAYTDRTRGKEVKADWSNGKVAMTGKSYLGTLPNAVATTGVEG---LETIIPEAAI 372 (767)
T ss_pred HHHHHHHHHHHHhhCCccccccccccccccCCCCCeeEEEEEcHHHHHHHHHHhhCCCc---ceEEEeeCCC
Confidence 36888999999874311 25899999999999999999887765 4445555544
No 166
>PF02089 Palm_thioest: Palmitoyl protein thioesterase; InterPro: IPR002472 Neuronal ceroid lipofuscinoses (NCL) represent a group of encephalopathies that occur in 1 in 12,500 children. Mutations in the palmitoyl protein thioesterase gene causing infantile neuronal ceroid lipofuscinosis []. The most common mutation results in intracellular accumulation of the polypeptide and undetectable enzyme activity in the brain. Direct sequencing of cDNAs derived from brain RNA of INCL patients has shown a mis-sense transversion of A to T at nucleotide position 364, which results in substitution of Trp for Arg at position 122 in the protein - Arg 122 is immediately adjacent to a lipase consensus sequence that contains the putative active site Ser of PPT. The occurrence of this and two other independent mutations in the PPT gene strongly suggests that defects in this gene cause INCL.; GO: 0008474 palmitoyl-(protein) hydrolase activity, 0006464 protein modification process; PDB: 3GRO_B 1PJA_A 1EXW_A 1EH5_A 1EI9_A.
Probab=94.19 E-value=0.11 Score=38.27 Aligned_cols=48 Identities=13% Similarity=0.019 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhC-----CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeec
Q psy17377 22 TTATIDYVLNVTG-----KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWA 71 (106)
Q Consensus 22 l~~~i~~v~~~~~-----~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~ 71 (106)
+...++.+++.+. ..-+++||+|+||.+.=.++-++|.. .|..+|.++
T Consensus 61 v~~Qv~~vc~~l~~~p~L~~G~~~IGfSQGgl~lRa~vq~c~~~--~V~nlISlg 113 (279)
T PF02089_consen 61 VNDQVEQVCEQLANDPELANGFNAIGFSQGGLFLRAYVQRCNDP--PVHNLISLG 113 (279)
T ss_dssp HHHHHHHHHHHHHH-GGGTT-EEEEEETCHHHHHHHHHHH-TSS---EEEEEEES
T ss_pred HHHHHHHHHHHHhhChhhhcceeeeeeccccHHHHHHHHHCCCC--CceeEEEec
Confidence 3445555554432 14689999999999999999888753 466666555
No 167
>PLN02633 palmitoyl protein thioesterase family protein
Probab=94.10 E-value=0.19 Score=37.55 Aligned_cols=51 Identities=12% Similarity=-0.039 Sum_probs=34.6
Q ss_pred ccHHHHHHHHHHHhCC-----CcEEEEEeChHHHHHHHHHHcCcccccccceEEeec
Q psy17377 20 YDTTATIDYVLNVTGK-----KKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWA 71 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~-----~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~ 71 (106)
.++-+.++.+++.+.. .-+++||||+||.++=.++.++|+. ..|..+|.++
T Consensus 73 ~~~~~Qve~vce~l~~~~~l~~G~naIGfSQGGlflRa~ierc~~~-p~V~nlISlg 128 (314)
T PLN02633 73 MPLTQQAEIACEKVKQMKELSQGYNIVGRSQGNLVARGLIEFCDGG-PPVYNYISLA 128 (314)
T ss_pred eCHHHHHHHHHHHHhhchhhhCcEEEEEEccchHHHHHHHHHCCCC-CCcceEEEec
Confidence 4445566665554321 3589999999999999999998862 2455555544
No 168
>KOG3847|consensus
Probab=94.10 E-value=0.021 Score=42.96 Aligned_cols=50 Identities=14% Similarity=0.164 Sum_probs=32.4
Q ss_pred HHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEE-eechhhhcc
Q psy17377 27 DYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSI-LWAQAAFLG 77 (106)
Q Consensus 27 ~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v-~~~P~~~~~ 77 (106)
+.++..+...++.++|||.||+++....+.+.+... -+.++ .+-|.....
T Consensus 232 ~~~K~nl~~s~~aViGHSFGgAT~i~~ss~~t~Frc-aI~lD~WM~Pl~~~~ 282 (399)
T KOG3847|consen 232 EQLKGNLDTSQAAVIGHSFGGATSIASSSSHTDFRC-AIALDAWMFPLDQLQ 282 (399)
T ss_pred HHHhcchhhhhhhheeccccchhhhhhhccccceee-eeeeeeeecccchhh
Confidence 334444556789999999999999988877655433 33343 345655433
No 169
>PLN02606 palmitoyl-protein thioesterase
Probab=93.86 E-value=0.25 Score=36.85 Aligned_cols=51 Identities=4% Similarity=-0.113 Sum_probs=34.9
Q ss_pred ccHHHHHHHHHHHhCC-----CcEEEEEeChHHHHHHHHHHcCcccccccceEEeec
Q psy17377 20 YDTTATIDYVLNVTGK-----KKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWA 71 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~-----~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~ 71 (106)
.++-+.++.+++.+.. .-+++||+|+||.+.=.++.++|.. ..|+.+|.++
T Consensus 74 ~~~~~Qv~~vce~l~~~~~L~~G~naIGfSQGglflRa~ierc~~~-p~V~nlISlg 129 (306)
T PLN02606 74 MPLRQQASIACEKIKQMKELSEGYNIVAESQGNLVARGLIEFCDNA-PPVINYVSLG 129 (306)
T ss_pred cCHHHHHHHHHHHHhcchhhcCceEEEEEcchhHHHHHHHHHCCCC-CCcceEEEec
Confidence 3445566666555421 3589999999999999999988862 2455556544
No 170
>PF12048 DUF3530: Protein of unknown function (DUF3530); InterPro: IPR022529 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 272 to 336 amino acids in length. These proteins are distantly related to alpa/beta hydrolases so they may act as enzymes.
Probab=93.85 E-value=0.24 Score=36.78 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=32.2
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhc
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFL 76 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~ 76 (106)
.+..++.+|||+.|+..+..|.+..+.- .+..+|+++|-...
T Consensus 190 ~~~~~ivlIg~G~gA~~~~~~la~~~~~--~~daLV~I~a~~p~ 231 (310)
T PF12048_consen 190 QGGKNIVLIGHGTGAGWAARYLAEKPPP--MPDALVLINAYWPQ 231 (310)
T ss_pred cCCceEEEEEeChhHHHHHHHHhcCCCc--ccCeEEEEeCCCCc
Confidence 3555699999999999999999987642 35677788875443
No 171
>PRK10115 protease 2; Provisional
Probab=93.75 E-value=0.14 Score=41.86 Aligned_cols=56 Identities=21% Similarity=0.089 Sum_probs=43.4
Q ss_pred cccHHHHHHHHHHH--hCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 19 IYDTTATIDYVLNV--TGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~--~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
..|+.+.+++++++ +.-+++.+.|-|.||.++...+.++|++.+ +.++..|+..+.
T Consensus 505 ~~D~~a~~~~Lv~~g~~d~~rl~i~G~S~GG~l~~~~~~~~Pdlf~---A~v~~vp~~D~~ 562 (686)
T PRK10115 505 FNDYLDACDALLKLGYGSPSLCYGMGGSAGGMLMGVAINQRPELFH---GVIAQVPFVDVV 562 (686)
T ss_pred HHHHHHHHHHHHHcCCCChHHeEEEEECHHHHHHHHHHhcChhhee---EEEecCCchhHh
Confidence 57888889998775 234689999999999999999999998744 445666666543
No 172
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=93.47 E-value=0.15 Score=41.02 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=30.6
Q ss_pred cccHHHHHHHHHHHhCC--CcEEEEEeChHHHHHHHHHHcCcc
Q psy17377 19 IYDTTATIDYVLNVTGK--KKVITIGHSMGTTNVLVAGSLRPE 59 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~--~~~~lvGHSmGg~i~l~~~~~~p~ 59 (106)
..|+-+.++.+.+.... +++.+.|||.||.++++.+...|.
T Consensus 454 ~~D~~~~~~~l~~~~~~d~~ri~i~G~SyGGymtl~~~~~~~~ 496 (620)
T COG1506 454 LEDLIAAVDALVKLPLVDPERIGITGGSYGGYMTLLAATKTPR 496 (620)
T ss_pred HHHHHHHHHHHHhCCCcChHHeEEeccChHHHHHHHHHhcCch
Confidence 45666666644443333 389999999999999999988873
No 173
>KOG1553|consensus
Probab=93.32 E-value=0.19 Score=38.64 Aligned_cols=40 Identities=28% Similarity=0.454 Sum_probs=32.7
Q ss_pred cHHHHHHHHHHHhC--CCcEEEEEeChHHHHHHHHHHcCccc
Q psy17377 21 DTTATIDYVLNVTG--KKKVITIGHSMGTTNVLVAGSLRPEY 60 (106)
Q Consensus 21 Dl~~~i~~v~~~~~--~~~~~lvGHSmGg~i~l~~~~~~p~~ 60 (106)
-+.+++.+.++.++ .+.+++.|+|.||..+...|+.+|+.
T Consensus 294 A~DaVvQfAI~~Lgf~~edIilygWSIGGF~~~waAs~YPdV 335 (517)
T KOG1553|consen 294 AADAVVQFAIQVLGFRQEDIILYGWSIGGFPVAWAASNYPDV 335 (517)
T ss_pred HHHHHHHHHHHHcCCCccceEEEEeecCCchHHHHhhcCCCc
Confidence 34456777777765 46899999999999999999999973
No 174
>PF05577 Peptidase_S28: Serine carboxypeptidase S28; InterPro: IPR008758 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S28 (clan SC). The predicted active site residues for members of this family and family S10 occur in the same order in the sequence: S, D, H. These serine proteases include several eukaryotic enzymes such as lysosomal Pro-X carboxypeptidase, dipeptidyl-peptidase II, and thymus-specific serine peptidase [, , , ].; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3N2Z_B 3JYH_A 3N0T_C.
Probab=93.28 E-value=0.3 Score=37.43 Aligned_cols=56 Identities=16% Similarity=0.041 Sum_probs=39.4
Q ss_pred ccccHHHHHHHHHHHh---CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhc
Q psy17377 18 GIYDTTATIDYVLNVT---GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFL 76 (106)
Q Consensus 18 ~~~Dl~~~i~~v~~~~---~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~ 76 (106)
+..|++.+++++.+.. ...+++++|=|-||+++..+-.++|+. +.+.++.|++...
T Consensus 92 ALaD~a~F~~~~~~~~~~~~~~pwI~~GgSY~G~Laaw~r~kyP~~---~~ga~ASSapv~a 150 (434)
T PF05577_consen 92 ALADLAYFIRYVKKKYNTAPNSPWIVFGGSYGGALAAWFRLKYPHL---FDGAWASSAPVQA 150 (434)
T ss_dssp HHHHHHHHHHHHHHHTTTGCC--EEEEEETHHHHHHHHHHHH-TTT----SEEEEET--CCH
T ss_pred HHHHHHHHHHHHHHhhcCCCCCCEEEECCcchhHHHHHHHhhCCCe---eEEEEeccceeee
Confidence 4688889999988654 335899999999999999999999997 4455555544433
No 175
>KOG4391|consensus
Probab=93.09 E-value=0.023 Score=40.91 Aligned_cols=45 Identities=24% Similarity=0.411 Sum_probs=36.7
Q ss_pred cccHHHHHHHHHHHhC--CCcEEEEEeChHHHHHHHHHHcCcccccc
Q psy17377 19 IYDTTATIDYVLNVTG--KKKVITIGHSMGTTNVLVAGSLRPEYQSK 63 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~--~~~~~lvGHSmGg~i~l~~~~~~p~~~~~ 63 (106)
.-|-.++++++.++.. ..|+++.|-|.||+++...|+.+.++...
T Consensus 130 ~lDs~avldyl~t~~~~dktkivlfGrSlGGAvai~lask~~~ri~~ 176 (300)
T KOG4391|consen 130 KLDSEAVLDYLMTRPDLDKTKIVLFGRSLGGAVAIHLASKNSDRISA 176 (300)
T ss_pred eccHHHHHHHHhcCccCCcceEEEEecccCCeeEEEeeccchhheee
Confidence 5677889999888754 45899999999999999999987765443
No 176
>COG3571 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=92.90 E-value=0.2 Score=34.66 Aligned_cols=44 Identities=18% Similarity=0.084 Sum_probs=30.9
Q ss_pred HHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 26 i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
+.++++...-.++++=||||||.++.+.+..- ...|..+++++-
T Consensus 79 ~aql~~~l~~gpLi~GGkSmGGR~aSmvade~---~A~i~~L~clgY 122 (213)
T COG3571 79 IAQLRAGLAEGPLIIGGKSMGGRVASMVADEL---QAPIDGLVCLGY 122 (213)
T ss_pred HHHHHhcccCCceeeccccccchHHHHHHHhh---cCCcceEEEecC
Confidence 33444444444899999999999999988653 334777777763
No 177
>COG3946 VirJ Type IV secretory pathway, VirJ component [Intracellular trafficking and secretion]
Probab=92.63 E-value=0.17 Score=39.30 Aligned_cols=54 Identities=24% Similarity=0.205 Sum_probs=42.7
Q ss_pred CccccccccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 5 YETYMILVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 5 ~~~~~w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
+=+-||.-+-.+-.-.|+..++.+-..+.+..++.++|+|+|+-+.-....+-|
T Consensus 295 sLRYfW~~rtPe~~a~Dl~r~i~~y~~~w~~~~~~liGySfGADvlP~~~n~L~ 348 (456)
T COG3946 295 SLRYFWSERTPEQIAADLSRLIRFYARRWGAKRVLLIGYSFGADVLPFAYNRLP 348 (456)
T ss_pred hhhhhhccCCHHHHHHHHHHHHHHHHHhhCcceEEEEeecccchhhHHHHHhCC
Confidence 446788766666566999999999999999999999999999988655444434
No 178
>PF03583 LIP: Secretory lipase ; InterPro: IPR005152 This entry represents a family of secreted lipases. Family members include the LIP lipases from Candida albicans, which are expressed and secreted during the infection cycle of these pathogens [].; GO: 0004806 triglyceride lipase activity, 0016042 lipid catabolic process
Probab=92.61 E-value=0.27 Score=35.99 Aligned_cols=41 Identities=27% Similarity=0.232 Sum_probs=28.2
Q ss_pred CcEEEEEeChHHHHHHHHHHcCc----ccccccceEEeechhhhc
Q psy17377 36 KKVITIGHSMGTTNVLVAGSLRP----EYQSKISLSILWAQAAFL 76 (106)
Q Consensus 36 ~~~~lvGHSmGg~i~l~~~~~~p----~~~~~v~~~v~~~P~~~~ 76 (106)
.++.+.|||+||..++..+...| |....+++....+|+..+
T Consensus 71 ~~v~l~GySqGG~Aa~~AA~l~~~YApeL~~~l~Gaa~gg~~~dl 115 (290)
T PF03583_consen 71 SRVALWGYSQGGQAALWAAELAPSYAPELNRDLVGAAAGGPPADL 115 (290)
T ss_pred CCEEEEeeCccHHHHHHHHHHhHHhCcccccceeEEeccCCccCH
Confidence 47999999999999887765544 443236666666665543
No 179
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=92.46 E-value=0.33 Score=37.44 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=38.6
Q ss_pred cccccHHHHHHHHHHHh---C--CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeech
Q psy17377 17 IGIYDTTATIDYVLNVT---G--KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQ 72 (106)
Q Consensus 17 ~~~~Dl~~~i~~v~~~~---~--~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P 72 (106)
++..|.-+.++.|++.. | -++|.+.|||.||..+...+.. |.-.......|+.|.
T Consensus 184 ~Gl~Dq~~AL~WV~~nI~~FGGDp~~VTl~G~SAGa~sv~~~l~s-p~~~~LF~raI~~SG 243 (535)
T PF00135_consen 184 YGLLDQRLALKWVQDNIAAFGGDPDNVTLFGQSAGAASVSLLLLS-PSSKGLFHRAILQSG 243 (535)
T ss_dssp HHHHHHHHHHHHHHHHGGGGTEEEEEEEEEEETHHHHHHHHHHHG-GGGTTSBSEEEEES-
T ss_pred hhhhhhHHHHHHHHhhhhhcccCCcceeeeeecccccccceeeec-ccccccccccccccc
Confidence 34567778888888764 2 3589999999999998877766 543334555566665
No 180
>PF02129 Peptidase_S15: X-Pro dipeptidyl-peptidase (S15 family); InterPro: IPR000383 This entry represents a domain found peptidases Xaa-Pro dipeptidyl-peptidase and glutaryl-7-aminocephalosporanic-acid acylase, which belong to MEROPS peptidase families S15 and S45 respectively []. It is also found in hydrolases from the CocE/NonD family. Cocaine esterase (CocE) hydrolyzes cocaine endowing the bacteria with the ability to utilise cocaine as a sole source of carbon and energy []. ; GO: 0004177 aminopeptidase activity, 0006508 proteolysis; PDB: 1LNS_A 3PUI_A 3PUH_B 1JU3_A 3I2I_A 3I2G_A 1JU4_A 3I2K_A 3IDA_A 3I2H_A ....
Probab=92.36 E-value=0.41 Score=34.29 Aligned_cols=52 Identities=21% Similarity=0.143 Sum_probs=38.7
Q ss_pred cccHHHHHHHHHHHhCC--CcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 19 IYDTTATIDYVLNVTGK--KKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~--~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
..|..+.|+.+.+. .+ .++-++|.|.+|.+++..|+..|.. |++++...+..
T Consensus 83 ~~D~~d~I~W~~~Q-pws~G~VGm~G~SY~G~~q~~~A~~~~p~---LkAi~p~~~~~ 136 (272)
T PF02129_consen 83 AQDGYDTIEWIAAQ-PWSNGKVGMYGISYGGFTQWAAAARRPPH---LKAIVPQSGWS 136 (272)
T ss_dssp HHHHHHHHHHHHHC-TTEEEEEEEEEETHHHHHHHHHHTTT-TT---EEEEEEESE-S
T ss_pred HHHHHHHHHHHHhC-CCCCCeEEeeccCHHHHHHHHHHhcCCCC---ceEEEecccCC
Confidence 58888999998886 33 3899999999999999999976654 55555544443
No 181
>COG4188 Predicted dienelactone hydrolase [General function prediction only]
Probab=92.18 E-value=0.22 Score=37.96 Aligned_cols=41 Identities=22% Similarity=0.348 Sum_probs=32.7
Q ss_pred cccHHHHHHHHHHH---------hCCCcEEEEEeChHHHHHHHHHHcCcc
Q psy17377 19 IYDTTATIDYVLNV---------TGKKKVITIGHSMGTTNVLVAGSLRPE 59 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~---------~~~~~~~lvGHSmGg~i~l~~~~~~p~ 59 (106)
..|+..+++.+.+. .+..++-++|||.||..++..+..+.+
T Consensus 133 p~dis~lLd~L~~~~~sP~l~~~ld~~~Vgv~GhS~GG~T~m~laGA~~~ 182 (365)
T COG4188 133 PLDISALLDALLQLTASPALAGRLDPQRVGVLGHSFGGYTAMELAGAELD 182 (365)
T ss_pred cccHHHHHHHHHHhhcCcccccccCccceEEEecccccHHHHHhcccccc
Confidence 58889999988776 134588999999999999988866554
No 182
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=92.15 E-value=0.15 Score=39.42 Aligned_cols=39 Identities=21% Similarity=0.274 Sum_probs=30.6
Q ss_pred ccccHHHHHHHHHHHh-----CCCcEEEEEeChHHHHHHHHHHc
Q psy17377 18 GIYDTTATIDYVLNVT-----GKKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 18 ~~~Dl~~~i~~v~~~~-----~~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
+..|..+.++.+.+.. +-.++.+.|||.||..+...+..
T Consensus 153 g~~D~~~al~wv~~~i~~fggd~~~v~~~G~SaG~~~~~~~~~~ 196 (493)
T cd00312 153 GLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLLS 196 (493)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCcceEEEEeecHHHHHhhhHhhC
Confidence 4567778888877653 34599999999999998877765
No 183
>KOG2100|consensus
Probab=92.08 E-value=0.25 Score=40.93 Aligned_cols=61 Identities=16% Similarity=0.099 Sum_probs=42.6
Q ss_pred cccHHHHHHHHHHHh--CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccccch
Q psy17377 19 IYDTTATIDYVLNVT--GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMHM 81 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~--~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~~~~ 81 (106)
..|.-..++.+++.. +.+++.+.|+|-||-+++..+...|+.. .++.+..+|+..+....+
T Consensus 589 v~D~~~~~~~~~~~~~iD~~ri~i~GwSyGGy~t~~~l~~~~~~~--fkcgvavaPVtd~~~yds 651 (755)
T KOG2100|consen 589 VKDQIEAVKKVLKLPFIDRSRVAIWGWSYGGYLTLKLLESDPGDV--FKCGVAVAPVTDWLYYDS 651 (755)
T ss_pred hHHHHHHHHHHHhcccccHHHeEEeccChHHHHHHHHhhhCcCce--EEEEEEecceeeeeeecc
Confidence 344444455555543 4468999999999999999999988542 333478999988775443
No 184
>COG5153 CVT17 Putative lipase essential for disintegration of autophagic bodies inside the vacuole [Intracellular trafficking and secretion / Lipid metabolism]
Probab=91.77 E-value=0.24 Score=37.15 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=24.0
Q ss_pred HHHHHhCCCcEEEEEeChHHHHHHHHHHcC
Q psy17377 28 YVLNVTGKKKVITIGHSMGTTNVLVAGSLR 57 (106)
Q Consensus 28 ~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~ 57 (106)
.+++.....++.+.|||+||++|..+..++
T Consensus 268 ~v~~~Ypda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T COG5153 268 AVRRIYPDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred HHHHhCCCceEEEeccccchHHHHHhcccc
Confidence 355555667999999999999998877664
No 185
>KOG4540|consensus
Probab=91.77 E-value=0.24 Score=37.15 Aligned_cols=30 Identities=20% Similarity=0.224 Sum_probs=24.0
Q ss_pred HHHHHhCCCcEEEEEeChHHHHHHHHHHcC
Q psy17377 28 YVLNVTGKKKVITIGHSMGTTNVLVAGSLR 57 (106)
Q Consensus 28 ~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~ 57 (106)
.+++.....++.+.|||+||++|..+..++
T Consensus 268 ~v~~~Ypda~iwlTGHSLGGa~AsLlG~~f 297 (425)
T KOG4540|consen 268 AVRRIYPDARIWLTGHSLGGAIASLLGIRF 297 (425)
T ss_pred HHHHhCCCceEEEeccccchHHHHHhcccc
Confidence 355555667999999999999998877664
No 186
>KOG3975|consensus
Probab=91.71 E-value=0.74 Score=33.82 Aligned_cols=54 Identities=19% Similarity=0.230 Sum_probs=34.7
Q ss_pred ccHHHHHHH----HHHHh-CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhh
Q psy17377 20 YDTTATIDY----VLNVT-GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAA 74 (106)
Q Consensus 20 ~Dl~~~i~~----v~~~~-~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~ 74 (106)
+.+...|++ +.+.. ...|++++|||-|+-+.+...-.... .-.|+..+++-|..
T Consensus 89 fsL~~QV~HKlaFik~~~Pk~~ki~iiGHSiGaYm~Lqil~~~k~-~~~vqKa~~LFPTI 147 (301)
T KOG3975|consen 89 FSLQDQVDHKLAFIKEYVPKDRKIYIIGHSIGAYMVLQILPSIKL-VFSVQKAVLLFPTI 147 (301)
T ss_pred cchhhHHHHHHHHHHHhCCCCCEEEEEecchhHHHHHHHhhhccc-ccceEEEEEecchH
Confidence 444455554 44443 34589999999999999988864222 22455566777755
No 187
>COG2382 Fes Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
Probab=91.53 E-value=0.15 Score=37.92 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=30.0
Q ss_pred cEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 37 KVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 37 ~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
.-.+.|-|+||.++++.+..+|+.+-+| +..||...-.
T Consensus 178 ~r~L~G~SlGG~vsL~agl~~Pe~FG~V---~s~Sps~~~~ 215 (299)
T COG2382 178 GRVLAGDSLGGLVSLYAGLRHPERFGHV---LSQSGSFWWT 215 (299)
T ss_pred CcEEeccccccHHHHHHHhcCchhhcee---eccCCccccC
Confidence 4579999999999999999999986655 3566655443
No 188
>PTZ00472 serine carboxypeptidase (CBP1); Provisional
Probab=91.51 E-value=0.32 Score=38.03 Aligned_cols=37 Identities=11% Similarity=0.112 Sum_probs=25.2
Q ss_pred ccHHHHHHHHHHH---hCCCcEEEEEeChHHHHHHHHHHc
Q psy17377 20 YDTTATIDYVLNV---TGKKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 20 ~Dl~~~i~~v~~~---~~~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
.|+.++++...++ .+..+++++|||+||..+-.++..
T Consensus 152 ~d~~~~l~~f~~~~p~~~~~~~~i~GeSygG~y~p~~a~~ 191 (462)
T PTZ00472 152 EDMYNFLQAFFGSHEDLRANDLFVVGESYGGHYAPATAYR 191 (462)
T ss_pred HHHHHHHHHHHHhCccccCCCEEEEeecchhhhHHHHHHH
Confidence 4444444444333 234789999999999998777754
No 189
>KOG4627|consensus
Probab=91.16 E-value=0.13 Score=36.74 Aligned_cols=53 Identities=25% Similarity=0.171 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhC-CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 23 TATIDYVLNVTG-KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 23 ~~~i~~v~~~~~-~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
..-++++++.+. .+++.+-|||.|+.+++....+. +..+|.++++++.+..+.
T Consensus 122 ~~gv~filk~~~n~k~l~~gGHSaGAHLa~qav~R~--r~prI~gl~l~~GvY~l~ 175 (270)
T KOG4627|consen 122 THGVNFILKYTENTKVLTFGGHSAGAHLAAQAVMRQ--RSPRIWGLILLCGVYDLR 175 (270)
T ss_pred HHHHHHHHHhcccceeEEEcccchHHHHHHHHHHHh--cCchHHHHHHHhhHhhHH
Confidence 344566676654 45677889999999999888762 223466666666554443
No 190
>COG1770 PtrB Protease II [Amino acid transport and metabolism]
Probab=90.94 E-value=0.35 Score=39.46 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=36.9
Q ss_pred ccHHHHHHHHHHH--hCCCcEEEEEeChHHHHHHHHHHcCcccccccce
Q psy17377 20 YDTTATIDYVLNV--TGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISL 66 (106)
Q Consensus 20 ~Dl~~~i~~v~~~--~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~ 66 (106)
.|+-++.+++++. +..+.+.++|-|.||+++...+...|++...+++
T Consensus 509 ~DFIa~a~~Lv~~g~~~~~~i~a~GGSAGGmLmGav~N~~P~lf~~iiA 557 (682)
T COG1770 509 TDFIAAARHLVKEGYTSPDRIVAIGGSAGGMLMGAVANMAPDLFAGIIA 557 (682)
T ss_pred HHHHHHHHHHHHcCcCCccceEEeccCchhHHHHHHHhhChhhhhheee
Confidence 5666788887764 2345899999999999999999999998665543
No 191
>KOG2183|consensus
Probab=89.29 E-value=0.33 Score=37.91 Aligned_cols=62 Identities=15% Similarity=0.086 Sum_probs=46.1
Q ss_pred ccccccHHHHHHHHHHHhC--CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcccc
Q psy17377 16 EIGIYDTTATIDYVLNVTG--KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHM 79 (106)
Q Consensus 16 ~~~~~Dl~~~i~~v~~~~~--~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~~ 79 (106)
|-+..|.+..+..+++.++ ..+++..|-|-||+++..+=..+|+.+. -++-..+|+.++...
T Consensus 145 eQALADfA~ll~~lK~~~~a~~~pvIafGGSYGGMLaAWfRlKYPHiv~--GAlAaSAPvl~f~d~ 208 (492)
T KOG2183|consen 145 EQALADFAELLTFLKRDLSAEASPVIAFGGSYGGMLAAWFRLKYPHIVL--GALAASAPVLYFEDT 208 (492)
T ss_pred HHHHHHHHHHHHHHhhccccccCcEEEecCchhhHHHHHHHhcChhhhh--hhhhccCceEeecCC
Confidence 3356788888888887654 4589999999999999999999998732 123356676666554
No 192
>PF08237 PE-PPE: PE-PPE domain; InterPro: IPR013228 The human pathogen Mycobacterium tuberculosis harbours a large number of genes that encode proteins whose N-termini contain the characteristic motifs Pro-Glu (PE) or Pro-Pro-Glu (PPE). A subgroup of the PE proteins contains polymorphic GC-rich sequences (PGRS), while a subgroup of the PPE proteins contains major polymorphic tandem repeats (MPTR). The function of most of these proteins remains unknown []. However, the PE_PGRS proteins from Mycobacterium marinum are secreted by components of the ESX-5 system that belongs to the recently defined type VII secretion systems []. It has also been reported that the PE_PGRS family of proteins contains multiple calcium-binding and glycine-rich sequence motifs GGXGXD/NXUX. This sequence repeat constitutes a calcium-binding parallel beta-roll or parallel beta-helix structure and is found in RTX toxins secreted by many Gram-negative bacteria []. This domain is found C-terminal to the PE (IPR000084 from INTERPRO) and PPE (IPR000030 from INTERPRO) domains. The secondary structure of this domain is predicted to be a mixture of alpha helices and beta strands [].
Probab=88.94 E-value=1.2 Score=31.68 Aligned_cols=22 Identities=18% Similarity=0.069 Sum_probs=18.6
Q ss_pred CCcEEEEEeChHHHHHHHHHHc
Q psy17377 35 KKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 35 ~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
-+++.++|+|||+.++...+.+
T Consensus 47 ~~~vvV~GySQGA~Va~~~~~~ 68 (225)
T PF08237_consen 47 GGPVVVFGYSQGAVVASNVLRR 68 (225)
T ss_pred CCCEEEEEECHHHHHHHHHHHH
Confidence 3689999999999998877654
No 193
>KOG1515|consensus
Probab=88.84 E-value=1.3 Score=33.50 Aligned_cols=64 Identities=20% Similarity=0.123 Sum_probs=44.9
Q ss_pred cccHHHHHHHHHHH------hCCCcEEEEEeChHHHHHHHHHHcCcc---cccccceEEeechhhhccccchh
Q psy17377 19 IYDTTATIDYVLNV------TGKKKVITIGHSMGTTNVLVAGSLRPE---YQSKISLSILWAQAAFLGHMHMK 82 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~------~~~~~~~lvGHSmGg~i~l~~~~~~p~---~~~~v~~~v~~~P~~~~~~~~~~ 82 (106)
..|--+.+.++.+. .+-+++.++|=|.||.++...+.+.-+ ..-++++.+++-|.........+
T Consensus 143 y~D~~~Al~w~~~~~~~~~~~D~~rv~l~GDSaGGNia~~va~r~~~~~~~~~ki~g~ili~P~~~~~~~~~~ 215 (336)
T KOG1515|consen 143 YDDGWAALKWVLKNSWLKLGADPSRVFLAGDSAGGNIAHVVAQRAADEKLSKPKIKGQILIYPFFQGTDRTES 215 (336)
T ss_pred chHHHHHHHHHHHhHHHHhCCCcccEEEEccCccHHHHHHHHHHHhhccCCCcceEEEEEEecccCCCCCCCH
Confidence 45555666666553 355789999999999999988866331 23478889999998765554443
No 194
>COG4099 Predicted peptidase [General function prediction only]
Probab=86.72 E-value=1.2 Score=33.55 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=25.7
Q ss_pred CCCcEEEEEeChHHHHHHHHHHcCcccccc
Q psy17377 34 GKKKVITIGHSMGTTNVLVAGSLRPEYQSK 63 (106)
Q Consensus 34 ~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~ 63 (106)
+..+++++|.|+||.-++.++-.+|+....
T Consensus 267 D~sRIYviGlSrG~~gt~al~~kfPdfFAa 296 (387)
T COG4099 267 DRSRIYVIGLSRGGFGTWALAEKFPDFFAA 296 (387)
T ss_pred ccceEEEEeecCcchhhHHHHHhCchhhhe
Confidence 345899999999999999999999997543
No 195
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=86.37 E-value=0.78 Score=33.32 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=19.2
Q ss_pred cEEEEEeChHHHHHHHHHHcCcc
Q psy17377 37 KVITIGHSMGTTNVLVAGSLRPE 59 (106)
Q Consensus 37 ~~~lvGHSmGg~i~l~~~~~~p~ 59 (106)
+++-||||||+.+-+...+.++.
T Consensus 91 P~~~vGHSlGcklhlLi~s~~~~ 113 (250)
T PF07082_consen 91 PVYGVGHSLGCKLHLLIGSLFDV 113 (250)
T ss_pred CeeeeecccchHHHHHHhhhccC
Confidence 56789999999999988877653
No 196
>COG3458 Acetyl esterase (deacetylase) [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=85.52 E-value=0.54 Score=34.92 Aligned_cols=39 Identities=21% Similarity=0.382 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHH--hCCCcEEEEEeChHHHHHHHHHHcCcc
Q psy17377 21 DTTATIDYVLNV--TGKKKVITIGHSMGTTNVLVAGSLRPE 59 (106)
Q Consensus 21 Dl~~~i~~v~~~--~~~~~~~lvGHSmGg~i~l~~~~~~p~ 59 (106)
|.-..++-+... ..-+++.+-|-|+||.+++..++..|.
T Consensus 159 D~~~ave~~~sl~~vde~Ri~v~G~SqGGglalaaaal~~r 199 (321)
T COG3458 159 DAVRAVEILASLDEVDEERIGVTGGSQGGGLALAAAALDPR 199 (321)
T ss_pred HHHHHHHHHhccCccchhheEEeccccCchhhhhhhhcChh
Confidence 444455554432 345689999999999999999988773
No 197
>KOG2541|consensus
Probab=85.51 E-value=3 Score=30.91 Aligned_cols=34 Identities=12% Similarity=-0.017 Sum_probs=26.9
Q ss_pred CcEEEEEeChHHHHHHHHHHcCcccccccceEEeec
Q psy17377 36 KKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWA 71 (106)
Q Consensus 36 ~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~ 71 (106)
+-+++||.|+||.++-.++...|+ ..|+.+|.++
T Consensus 92 qGynivg~SQGglv~Raliq~cd~--ppV~n~ISL~ 125 (296)
T KOG2541|consen 92 QGYNIVGYSQGGLVARALIQFCDN--PPVKNFISLG 125 (296)
T ss_pred CceEEEEEccccHHHHHHHHhCCC--CCcceeEecc
Confidence 358999999999999988888776 4577666544
No 198
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=85.48 E-value=1.2 Score=35.25 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=46.3
Q ss_pred cccccHHHHHHHHHHH---hC--CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccccchhh--HHHHHH
Q psy17377 17 IGIYDTTATIDYVLNV---TG--KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMHMKY--MIDVFY 89 (106)
Q Consensus 17 ~~~~Dl~~~i~~v~~~---~~--~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~~~~~~--~~~~~~ 89 (106)
.+..|.-..++.|.+. .| -+++.+.|+|.|++.++..++. |+..-.....++.||........... .-..+.
T Consensus 156 ~Gl~DqilALkWV~~NIe~FGGDp~NVTl~GeSAGa~si~~Lla~-P~AkGLF~rAi~~Sg~~~~~~s~~~A~~~a~~f~ 234 (491)
T COG2272 156 LGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASILTLLAV-PSAKGLFHRAIALSGAASRVTSREEAREKAAAFA 234 (491)
T ss_pred ccHHHHHHHHHHHHHHHHHhCCCccceEEeeccchHHHHHHhhcC-ccchHHHHHHHHhCCCCCccCcHHHHHHHHHHHH
Confidence 4667777888887764 33 3589999999999998877765 64322222334566655322222221 133455
Q ss_pred HhcCcc
Q psy17377 90 SLFVVS 95 (106)
Q Consensus 90 ~~~~~~ 95 (106)
+.+|..
T Consensus 235 ~~lG~~ 240 (491)
T COG2272 235 RALGIP 240 (491)
T ss_pred HHhCCC
Confidence 555554
No 199
>PF07519 Tannase: Tannase and feruloyl esterase; InterPro: IPR011118 This family includes fungal tannase [] and feruloyl esterase [, ]. It also includes several bacterial homologues of unknown function.
Probab=84.41 E-value=1.6 Score=34.28 Aligned_cols=41 Identities=27% Similarity=0.097 Sum_probs=33.9
Q ss_pred CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccc
Q psy17377 35 KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78 (106)
Q Consensus 35 ~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~ 78 (106)
.++-++.|-|-||..++..|.++|+..+ .++.-+|+....+
T Consensus 114 p~~sY~~GcS~GGRqgl~~AQryP~dfD---GIlAgaPA~~~~~ 154 (474)
T PF07519_consen 114 PKYSYFSGCSTGGRQGLMAAQRYPEDFD---GILAGAPAINWTH 154 (474)
T ss_pred CCceEEEEeCCCcchHHHHHHhChhhcC---eEEeCCchHHHHH
Confidence 3467899999999999999999998744 5678889887644
No 200
>COG4947 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=82.18 E-value=1.6 Score=30.53 Aligned_cols=45 Identities=22% Similarity=0.140 Sum_probs=34.3
Q ss_pred HHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEE
Q psy17377 24 ATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSI 68 (106)
Q Consensus 24 ~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v 68 (106)
+.-.+|+++.-......-|-|||+..+..+.-++|+...||+++.
T Consensus 89 AyerYv~eEalpgs~~~sgcsmGayhA~nfvfrhP~lftkvialS 133 (227)
T COG4947 89 AYERYVIEEALPGSTIVSGCSMGAYHAANFVFRHPHLFTKVIALS 133 (227)
T ss_pred HHHHHHHHhhcCCCccccccchhhhhhhhhheeChhHhhhheeec
Confidence 344456665433456778999999999999999999999887653
No 201
>KOG3967|consensus
Probab=82.06 E-value=2.5 Score=30.59 Aligned_cols=50 Identities=16% Similarity=0.110 Sum_probs=35.6
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEe-echhhhccccchhh
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSIL-WAQAAFLGHMHMKY 83 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~-~~P~~~~~~~~~~~ 83 (106)
...+.+.++.||.||...+.+..++|+. ++|..+.+ -+|+...+....++
T Consensus 187 a~~~sv~vvahsyGG~~t~~l~~~f~~d-~~v~aialTDs~~~~p~a~~~e~ 237 (297)
T KOG3967|consen 187 AKAESVFVVAHSYGGSLTLDLVERFPDD-ESVFAIALTDSAMGSPQAKNKEY 237 (297)
T ss_pred cCcceEEEEEeccCChhHHHHHHhcCCc-cceEEEEeecccccCchhcCccH
Confidence 4567899999999999999999999975 55544332 34555555555554
No 202
>KOG2029|consensus
Probab=80.90 E-value=1.5 Score=35.79 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=15.8
Q ss_pred CCcEEEEEeChHHHHHHHHH
Q psy17377 35 KKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 35 ~~~~~lvGHSmGg~i~l~~~ 54 (106)
..++.+|||||||..+-..+
T Consensus 525 ~RPivwI~HSmGGLl~K~lL 544 (697)
T KOG2029|consen 525 DRPIVWIGHSMGGLLAKKLL 544 (697)
T ss_pred CCceEEEecccchHHHHHHH
Confidence 45889999999998865444
No 203
>KOG2281|consensus
Probab=80.80 E-value=2.8 Score=34.70 Aligned_cols=64 Identities=16% Similarity=0.113 Sum_probs=43.7
Q ss_pred ccccccHHHHH---HHHHHHh---CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccccchh
Q psy17377 16 EIGIYDTTATI---DYVLNVT---GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMHMK 82 (106)
Q Consensus 16 ~~~~~Dl~~~i---~~v~~~~---~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~~~~~ 82 (106)
.|+.-++...| ..+.+++ +.+++.+-|+|.||.++++..+++|+.. +..|+=+|+.......+.
T Consensus 701 kmGqVE~eDQVeglq~Laeq~gfidmdrV~vhGWSYGGYLSlm~L~~~P~If---rvAIAGapVT~W~~YDTg 770 (867)
T KOG2281|consen 701 KMGQVEVEDQVEGLQMLAEQTGFIDMDRVGVHGWSYGGYLSLMGLAQYPNIF---RVAIAGAPVTDWRLYDTG 770 (867)
T ss_pred ccCeeeehhhHHHHHHHHHhcCcccchheeEeccccccHHHHHHhhcCccee---eEEeccCcceeeeeeccc
Confidence 34434444444 4455665 3578999999999999999999999863 344567777665544443
No 204
>KOG2237|consensus
Probab=79.91 E-value=1.5 Score=35.91 Aligned_cols=47 Identities=23% Similarity=0.228 Sum_probs=38.1
Q ss_pred cccHHHHHHHHHHH--hCCCcEEEEEeChHHHHHHHHHHcCcccccccc
Q psy17377 19 IYDTTATIDYVLNV--TGKKKVITIGHSMGTTNVLVAGSLRPEYQSKIS 65 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~--~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~ 65 (106)
..|+.+..+++.+. +.-.++.+.|.|.||.++..+.-.+|++...++
T Consensus 530 f~Dfia~AeyLve~gyt~~~kL~i~G~SaGGlLvga~iN~rPdLF~avi 578 (712)
T KOG2237|consen 530 FDDFIACAEYLVENGYTQPSKLAIEGGSAGGLLVGACINQRPDLFGAVI 578 (712)
T ss_pred HHHHHHHHHHHHHcCCCCccceeEecccCccchhHHHhccCchHhhhhh
Confidence 46777888887764 345689999999999999999999999866554
No 205
>KOG1516|consensus
Probab=79.80 E-value=3.3 Score=32.51 Aligned_cols=39 Identities=26% Similarity=0.428 Sum_probs=29.0
Q ss_pred ccccHHHHHHHHHHHh-----CCCcEEEEEeChHHHHHHHHHHc
Q psy17377 18 GIYDTTATIDYVLNVT-----GKKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 18 ~~~Dl~~~i~~v~~~~-----~~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
+..|....++.+.+.. +-+++.+.|||.||..+-.....
T Consensus 172 gl~Dq~~AL~wv~~~I~~FGGdp~~vTl~G~saGa~~v~~l~~S 215 (545)
T KOG1516|consen 172 GLFDQLLALRWVKDNIPSFGGDPKNVTLFGHSAGAASVSLLTLS 215 (545)
T ss_pred cHHHHHHHHHHHHHHHHhcCCCCCeEEEEeechhHHHHHHHhcC
Confidence 3457777777777653 34689999999999998766643
No 206
>KOG3043|consensus
Probab=78.95 E-value=0.5 Score=34.00 Aligned_cols=43 Identities=26% Similarity=0.311 Sum_probs=35.1
Q ss_pred cccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcc
Q psy17377 17 IGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59 (106)
Q Consensus 17 ~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~ 59 (106)
....|+.++++.++.+-...++-++|.+|||.++-.+.+..|+
T Consensus 101 ~~~~~i~~v~k~lk~~g~~kkIGv~GfCwGak~vv~~~~~~~~ 143 (242)
T KOG3043|consen 101 KIWKDITAVVKWLKNHGDSKKIGVVGFCWGAKVVVTLSAKDPE 143 (242)
T ss_pred cchhHHHHHHHHHHHcCCcceeeEEEEeecceEEEEeeccchh
Confidence 3467888999998865447789999999999998888777763
No 207
>KOG4372|consensus
Probab=77.57 E-value=1.2 Score=34.53 Aligned_cols=21 Identities=29% Similarity=0.306 Sum_probs=17.0
Q ss_pred CCCcEEEEEeChHHHHHHHHH
Q psy17377 34 GKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 34 ~~~~~~lvGHSmGg~i~l~~~ 54 (106)
.++++..||||+||.++-.+.
T Consensus 148 si~kISfvghSLGGLvar~AI 168 (405)
T KOG4372|consen 148 SIEKISFVGHSLGGLVARYAI 168 (405)
T ss_pred ccceeeeeeeecCCeeeeEEE
Confidence 367999999999999865444
No 208
>smart00827 PKS_AT Acyl transferase domain in polyketide synthase (PKS) enzymes.
Probab=77.42 E-value=4.3 Score=29.14 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=21.7
Q ss_pred HHHHhCCCcEEEEEeChHHHHHHHHHH
Q psy17377 29 VLNVTGKKKVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 29 v~~~~~~~~~~lvGHSmGg~i~l~~~~ 55 (106)
+++..|.++-.++|||+|-..++..+.
T Consensus 75 ~l~~~Gi~p~~~~GhSlGE~aA~~~ag 101 (298)
T smart00827 75 LWRSWGVRPDAVVGHSLGEIAAAYVAG 101 (298)
T ss_pred HHHHcCCcccEEEecCHHHHHHHHHhC
Confidence 345678888899999999988877664
No 209
>KOG2385|consensus
Probab=75.44 E-value=4.6 Score=32.59 Aligned_cols=23 Identities=22% Similarity=0.401 Sum_probs=20.2
Q ss_pred hCCCcEEEEEeChHHHHHHHHHH
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~ 55 (106)
.|..++.+||+|+|+.+.+.+..
T Consensus 444 qG~RPVTLVGFSLGARvIf~CL~ 466 (633)
T KOG2385|consen 444 QGNRPVTLVGFSLGARVIFECLL 466 (633)
T ss_pred cCCCceeEeeeccchHHHHHHHH
Confidence 57889999999999999996665
No 210
>COG3150 Predicted esterase [General function prediction only]
Probab=75.19 E-value=7 Score=27.14 Aligned_cols=52 Identities=13% Similarity=0.158 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhccc
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~~ 78 (106)
...+.++.++...+.+..-++|-|+||.-+...+.++.= .+ +++.|......
T Consensus 44 ~a~~ele~~i~~~~~~~p~ivGssLGGY~At~l~~~~Gi-----ra-v~~NPav~P~e 95 (191)
T COG3150 44 QALKELEKAVQELGDESPLIVGSSLGGYYATWLGFLCGI-----RA-VVFNPAVRPYE 95 (191)
T ss_pred HHHHHHHHHHHHcCCCCceEEeecchHHHHHHHHHHhCC-----hh-hhcCCCcCchh
Confidence 344566667777777789999999999999998877542 11 35666555443
No 211
>TIGR03131 malonate_mdcH malonate decarboxylase, epsilon subunit. Members of this protein family are the epsilon subunit of malonate decarboxylase. This subunit has malonyl-CoA/dephospho-CoA acyltransferase activity. Malonate decarboxylase may be a soluble enzyme, or linked to membrane subunits and active as a sodium pump. The epsilon subunit is closely related to the malonyl CoA-acyl carrier protein (ACP) transacylase family described by TIGR00128, but acts on an ACP subunit of malonate decarboxylase that has an unusual coenzyme A derivative as its prothetic group.
Probab=74.86 E-value=7.1 Score=28.18 Aligned_cols=28 Identities=18% Similarity=0.145 Sum_probs=21.7
Q ss_pred HHHHhCCCcEEEEEeChHHHHHHHHHHc
Q psy17377 29 VLNVTGKKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 29 v~~~~~~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
.++..+.++..++|||+|=..++..+..
T Consensus 69 ~l~~~g~~P~~v~GhS~GE~aAa~~aG~ 96 (295)
T TIGR03131 69 ALLALLPRPSAVAGYSVGEYAAAVVAGV 96 (295)
T ss_pred HHHhcCCCCcEEeecCHHHHHHHHHhCC
Confidence 3445678888999999999888876643
No 212
>TIGR03712 acc_sec_asp2 accessory Sec system protein Asp2. This protein is designated Asp2 because, along with SecY2, SecA2, and other proteins it is part of the accessory secretory protein system. The system is involved in the export of serine-rich glycoproteins important for virulence in a number of Gram-positive species, including Streptococcus gordonii and Staphylococcus aureus. This protein family is assigned to transport rather than glycosylation function, but the specific molecular role is unknown.
Probab=74.72 E-value=4.6 Score=32.21 Aligned_cols=56 Identities=27% Similarity=0.272 Sum_probs=38.3
Q ss_pred ccHHHHHHHHHHHhCC--CcEEEEEeChHHHHHHHHHHc-CcccccccceEEeechhhhccccch
Q psy17377 20 YDTTATIDYVLNVTGK--KKVITIGHSMGTTNVLVAGSL-RPEYQSKISLSILWAQAAFLGHMHM 81 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~--~~~~lvGHSmGg~i~l~~~~~-~p~~~~~v~~~v~~~P~~~~~~~~~ 81 (106)
..+...|...++.+|. +++++-|-|||+-=|+.|++. .|+- ++.--|.+.+....+
T Consensus 339 ~~I~~~I~~~L~~LgF~~~qLILSGlSMGTfgAlYYga~l~P~A------IiVgKPL~NLGtiA~ 397 (511)
T TIGR03712 339 QGIINVIQEKLDYLGFDHDQLILSGLSMGTFGALYYGAKLSPHA------IIVGKPLVNLGTIAS 397 (511)
T ss_pred HHHHHHHHHHHHHhCCCHHHeeeccccccchhhhhhcccCCCce------EEEcCcccchhhhhc
Confidence 3344556666666765 479999999999999999987 5652 344456665555443
No 213
>TIGR00128 fabD malonyl CoA-acyl carrier protein transacylase. The seed alignment for this family of proteins contains a single member each from a number of bacterial species but also an additional pair of closely related, uncharacterized proteins from B. subtilis, one of which has a long C-terminal extension.
Probab=74.22 E-value=5.5 Score=28.43 Aligned_cols=27 Identities=37% Similarity=0.502 Sum_probs=20.8
Q ss_pred HHHhC-CCcEEEEEeChHHHHHHHHHHc
Q psy17377 30 LNVTG-KKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 30 ~~~~~-~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
+...+ ..+-.++|||+|=..++..+..
T Consensus 76 l~~~g~i~p~~v~GhS~GE~aAa~~aG~ 103 (290)
T TIGR00128 76 LKEQGGLKPDFAAGHSLGEYSALVAAGA 103 (290)
T ss_pred HHHcCCCCCCEEeecCHHHHHHHHHhCC
Confidence 34456 8888999999999888776643
No 214
>PF03283 PAE: Pectinacetylesterase
Probab=73.39 E-value=7.5 Score=29.60 Aligned_cols=41 Identities=22% Similarity=0.212 Sum_probs=30.4
Q ss_pred cccccccHHHHHHHHHHH-h-CCCcEEEEEeChHHHHHHHHHH
Q psy17377 15 HEIGIYDTTATIDYVLNV-T-GKKKVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 15 ~~~~~~Dl~~~i~~v~~~-~-~~~~~~lvGHSmGg~i~l~~~~ 55 (106)
...+...+.++++++++. + +.+++.+-|-|.||.-++..+-
T Consensus 133 ~frG~~i~~avl~~l~~~gl~~a~~vlltG~SAGG~g~~~~~d 175 (361)
T PF03283_consen 133 YFRGYRILRAVLDDLLSNGLPNAKQVLLTGCSAGGLGAILHAD 175 (361)
T ss_pred EeecHHHHHHHHHHHHHhcCcccceEEEeccChHHHHHHHHHH
Confidence 334455677788888776 3 3568999999999998887654
No 215
>PF00698 Acyl_transf_1: Acyl transferase domain; InterPro: IPR014043 Enzymes like bacterial malonyl CoA-acly carrier protein transacylase (2.3.1.39 from EC) and eukaryotic fatty acid synthase (2.3.1.85 from EC) that are involved in fatty acid biosynthesis belong to this group. Also included are the polyketide synthases 6-methylsalicylic acid synthase (2.3.1 from EC), a multifunctional enzyme that involved in the biosynthesis of patulin and conidial green pigment synthase (2.3.1 from EC).; PDB: 3HHD_C 2JFD_D 2JFK_A 3G87_A 3IM9_A 2QO3_B 3IM8_A 3EZO_A 2QJ3_A 2QC3_A ....
Probab=73.26 E-value=3.4 Score=30.34 Aligned_cols=28 Identities=39% Similarity=0.483 Sum_probs=22.1
Q ss_pred HHHHhCCCcEEEEEeChHHHHHHHHHHc
Q psy17377 29 VLNVTGKKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 29 v~~~~~~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
.++..|.++-.++|||+|=..++..+..
T Consensus 77 ~l~~~Gi~P~~v~GhSlGE~aA~~aaG~ 104 (318)
T PF00698_consen 77 LLRSWGIKPDAVIGHSLGEYAALVAAGA 104 (318)
T ss_dssp HHHHTTHCESEEEESTTHHHHHHHHTTS
T ss_pred hhcccccccceeeccchhhHHHHHHCCc
Confidence 4456788889999999999888866543
No 216
>PF04301 DUF452: Protein of unknown function (DUF452); InterPro: IPR007398 This is a family of uncharacterised proteins.
Probab=71.58 E-value=13 Score=26.38 Aligned_cols=25 Identities=16% Similarity=0.100 Sum_probs=20.1
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHcC
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSLR 57 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~~ 57 (106)
.+.+++++|++|||--++..+....
T Consensus 54 ~~y~~i~lvAWSmGVw~A~~~l~~~ 78 (213)
T PF04301_consen 54 SGYREIYLVAWSMGVWAANRVLQGI 78 (213)
T ss_pred ccCceEEEEEEeHHHHHHHHHhccC
Confidence 3578999999999998887776543
No 217
>KOG2112|consensus
Probab=70.75 E-value=6.7 Score=27.74 Aligned_cols=27 Identities=19% Similarity=0.154 Sum_probs=22.5
Q ss_pred CCcEEEEEeChHHHHHHHHHHcCcccc
Q psy17377 35 KKKVITIGHSMGTTNVLVAGSLRPEYQ 61 (106)
Q Consensus 35 ~~~~~lvGHSmGg~i~l~~~~~~p~~~ 61 (106)
..++.+=|.||||.+++..+..+|...
T Consensus 92 ~~rI~igGfs~G~a~aL~~~~~~~~~l 118 (206)
T KOG2112|consen 92 SNRIGIGGFSQGGALALYSALTYPKAL 118 (206)
T ss_pred ccceeEcccCchHHHHHHHHhcccccc
Confidence 357889999999999999998886543
No 218
>cd00382 beta_CA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=70.20 E-value=8.6 Score=24.44 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=25.9
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHH
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNV 50 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~ 50 (106)
+..+.+++....++.+.+.++||+--|++.
T Consensus 44 ~~~~sl~~av~~l~v~~ivV~gHt~CG~v~ 73 (119)
T cd00382 44 DVLASLEYAVEVLGVKHIIVCGHTDCGAVK 73 (119)
T ss_pred cHHHHHHHHHHhhCCCEEEEEccCCCcHHH
Confidence 677889999999999999999998777665
No 219
>KOG2565|consensus
Probab=67.57 E-value=11 Score=29.41 Aligned_cols=42 Identities=21% Similarity=0.150 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccc
Q psy17377 22 TTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSK 63 (106)
Q Consensus 22 l~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~ 63 (106)
.+.++..+.-++|..+..+-|--+|+.|+...++.+|+.+..
T Consensus 215 ~ArvmrkLMlRLg~nkffiqGgDwGSiI~snlasLyPenV~G 256 (469)
T KOG2565|consen 215 TARVMRKLMLRLGYNKFFIQGGDWGSIIGSNLASLYPENVLG 256 (469)
T ss_pred HHHHHHHHHHHhCcceeEeecCchHHHHHHHHHhhcchhhhH
Confidence 345566677788999999999999999999999999997543
No 220
>cd00883 beta_CA_cladeA Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=62.47 E-value=13 Score=25.49 Aligned_cols=34 Identities=18% Similarity=0.217 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~ 54 (106)
+..+.++|....++.+.+.++|||-=|++...+.
T Consensus 66 ~~~asleyAv~~L~v~~IvV~GHs~CGav~a~~~ 99 (182)
T cd00883 66 NCLSVLQYAVDVLKVKHIIVCGHYGCGGVKAALT 99 (182)
T ss_pred chhhhHHHHHHhcCCCEEEEecCCCchHHHHHHc
Confidence 3567899999999999999999998777766544
No 221
>KOG2551|consensus
Probab=61.90 E-value=8.9 Score=27.56 Aligned_cols=32 Identities=13% Similarity=0.238 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCC-CcE-EEEEeChHHHHHHHHHH
Q psy17377 24 ATIDYVLNVTGK-KKV-ITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 24 ~~i~~v~~~~~~-~~~-~lvGHSmGg~i~l~~~~ 55 (106)
..++++.+...- .+. -++|.|+|+.++...+.
T Consensus 90 esl~yl~~~i~enGPFDGllGFSQGA~laa~l~~ 123 (230)
T KOG2551|consen 90 ESLEYLEDYIKENGPFDGLLGFSQGAALAALLAG 123 (230)
T ss_pred HHHHHHHHHHHHhCCCccccccchhHHHHHHhhc
Confidence 345555544311 133 48999999999988887
No 222
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=61.73 E-value=10 Score=28.01 Aligned_cols=46 Identities=11% Similarity=0.064 Sum_probs=31.8
Q ss_pred cccccccccccccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHc
Q psy17377 9 MILVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 9 ~w~~s~~~~~~~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
--.|+.+.. ..|+..+++++. ..|..++-++.-|+.|.+++..++.
T Consensus 76 I~eftms~g-~~sL~~V~dwl~-~~g~~~~GLIAaSLSaRIAy~Va~~ 121 (294)
T PF02273_consen 76 INEFTMSIG-KASLLTVIDWLA-TRGIRRIGLIAASLSARIAYEVAAD 121 (294)
T ss_dssp -----HHHH-HHHHHHHHHHHH-HTT---EEEEEETTHHHHHHHHTTT
T ss_pred hhhcchHHh-HHHHHHHHHHHH-hcCCCcchhhhhhhhHHHHHHHhhc
Confidence 334555444 488888888887 5688899999999999999999975
No 223
>TIGR02816 pfaB_fam PfaB family protein. The protein PfaB is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. The fairly permissive trusted cutoff set for this model allows detection of homologs encoded near homologs to other proteins of the locus: PfaA, PfaC, and/or PfaD. The likely role in every case is either polyunsaturated fatty acid or polyketide biosynthesis.
Probab=61.62 E-value=14 Score=29.76 Aligned_cols=27 Identities=15% Similarity=0.151 Sum_probs=22.3
Q ss_pred HHhCCCcEEEEEeChHHHHHHHHHHcC
Q psy17377 31 NVTGKKKVITIGHSMGTTNVLVAGSLR 57 (106)
Q Consensus 31 ~~~~~~~~~lvGHSmGg~i~l~~~~~~ 57 (106)
+..|+++-.++|||+|=..++..+.-.
T Consensus 260 ~~~GI~Pdav~GHSlGE~aAa~aAGvl 286 (538)
T TIGR02816 260 DEFAIKPDFALGYSKGEASMWASLGVW 286 (538)
T ss_pred HhcCCCCCEEeecCHHHHHHHHHhCCC
Confidence 467888999999999998888777543
No 224
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=58.47 E-value=5.6 Score=27.71 Aligned_cols=34 Identities=15% Similarity=0.082 Sum_probs=22.6
Q ss_pred cHHHHHHHHHHHh---CCCcEEEEEeChHHHHHHHHH
Q psy17377 21 DTTATIDYVLNVT---GKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 21 Dl~~~i~~v~~~~---~~~~~~lvGHSmGg~i~l~~~ 54 (106)
.+....+.+++.. +.-+.+++-||+||.++.-++
T Consensus 106 ~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~ 142 (216)
T PF00091_consen 106 ALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLG 142 (216)
T ss_dssp HHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHH
T ss_pred cccccccccchhhccccccccceecccccceeccccc
Confidence 3344555566655 556789999999998754333
No 225
>KOG1551|consensus
Probab=57.29 E-value=7.4 Score=29.13 Aligned_cols=28 Identities=29% Similarity=0.340 Sum_probs=23.8
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHcCccc
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSLRPEY 60 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~~p~~ 60 (106)
.|..+..++|-||||.++-...+.++.-
T Consensus 192 ~g~g~~~~~g~Smgg~~a~~vgS~~q~P 219 (371)
T KOG1551|consen 192 DGLGNLNLVGRSMGGDIANQVGSLHQKP 219 (371)
T ss_pred cCcccceeeeeecccHHHHhhcccCCCC
Confidence 3567899999999999999999977654
No 226
>COG0331 FabD (acyl-carrier-protein) S-malonyltransferase [Lipid metabolism]
Probab=57.19 E-value=17 Score=27.23 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=18.7
Q ss_pred CCCcEEEEEeChHHHHHHHHHH
Q psy17377 34 GKKKVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 34 ~~~~~~lvGHSmGg~i~l~~~~ 55 (106)
+.++..+.|||+|=..++..+.
T Consensus 83 ~~~p~~~aGHSlGEysAl~~ag 104 (310)
T COG0331 83 GVKPDFVAGHSLGEYSALAAAG 104 (310)
T ss_pred CCCCceeecccHhHHHHHHHcc
Confidence 4777899999999998887775
No 227
>PF14253 AbiH: Bacteriophage abortive infection AbiH
Probab=55.03 E-value=10 Score=26.92 Aligned_cols=18 Identities=28% Similarity=0.527 Sum_probs=14.0
Q ss_pred CCCcEEEEEeChHHHHHH
Q psy17377 34 GKKKVITIGHSMGTTNVL 51 (106)
Q Consensus 34 ~~~~~~lvGHSmGg~i~l 51 (106)
....+++.|||+|.+=.-
T Consensus 233 ~i~~I~i~GhSl~~~D~~ 250 (270)
T PF14253_consen 233 DIDEIIIYGHSLGEVDYP 250 (270)
T ss_pred CCCEEEEEeCCCchhhHH
Confidence 457899999999976433
No 228
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=54.68 E-value=26 Score=22.85 Aligned_cols=30 Identities=17% Similarity=0.251 Sum_probs=23.7
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHH
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNV 50 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~ 50 (106)
+..+.+++....++.+.+.++||+-=|++.
T Consensus 41 ~~~~sl~~av~~l~~~~IiV~gHt~Cg~~~ 70 (142)
T cd03379 41 DAIRSLVVSVYLLGTREIIVIHHTDCGMLT 70 (142)
T ss_pred hHHHHHHHHHHHhCCCEEEEEeecCCcceE
Confidence 566678888888999999999998555543
No 229
>PLN00416 carbonate dehydratase
Probab=54.10 E-value=21 Score=26.01 Aligned_cols=34 Identities=18% Similarity=0.231 Sum_probs=27.9
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~ 54 (106)
+..+.+++-+..++.+.+.++|||-=|.+...+.
T Consensus 125 ~~~asLEyAv~~L~V~~IVV~GHs~CGaV~Aa~~ 158 (258)
T PLN00416 125 GVGAAVEYAVVHLKVENILVIGHSCCGGIKGLMS 158 (258)
T ss_pred cchhHHHHHHHHhCCCEEEEecCCCchHHHHHHh
Confidence 4567899999999999999999998777655443
No 230
>cd00884 beta_CA_cladeB Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=53.17 E-value=22 Score=24.60 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Q psy17377 22 TTATIDYVLNVTGKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 22 l~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~ 54 (106)
..+.++|.+..++.+.+.++|||-=|.+...+.
T Consensus 73 ~~asleyav~~l~v~~ivV~GH~~Cgav~Aa~~ 105 (190)
T cd00884 73 TSAAIEYAVAVLKVEHIVVCGHSDCGGIRALLS 105 (190)
T ss_pred hhhhHHHHHHHhCCCEEEEeCCCcchHHHHHhc
Confidence 568899999999999999999998777766554
No 231
>cd07225 Pat_PNPLA6_PNPLA7 Patatin-like phospholipase domain containing protein 6 and protein 7. Patatin-like phospholipase domain containing protein 6 (PNPLA6) and protein 7 (PNPLA7) are 60% identical to each other. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. PNPLA7 is an insulin-regulated phospholipase that is homologous to Neuropathy Target Esterase (NTE or PNPLA6) and is also known as NTE-related esterase (NRE). Human NRE is predominantly expressed in prostate, white adipose, and pancreatic tissue. NRE
Probab=52.73 E-value=31 Score=25.59 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=23.3
Q ss_pred HHHhCCCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 30 LNVTGKKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 30 ~~~~~~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
+++.++..-.++|=|+|+.++..|++.++
T Consensus 37 Lee~gi~~d~v~GtSaGAi~ga~ya~g~~ 65 (306)
T cd07225 37 LEEAGIPVDMVGGTSIGAFIGALYAEERN 65 (306)
T ss_pred HHHcCCCCCEEEEECHHHHHHHHHHcCCC
Confidence 44457776778999999999999998743
No 232
>PRK10279 hypothetical protein; Provisional
Probab=50.96 E-value=30 Score=25.60 Aligned_cols=29 Identities=24% Similarity=0.163 Sum_probs=23.7
Q ss_pred HHHhCCCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 30 LNVTGKKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 30 ~~~~~~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
+++.+.+.-.+.|=|+|+.++..|++-..
T Consensus 27 L~E~gi~~d~i~GtS~GAlvga~yA~g~~ 55 (300)
T PRK10279 27 LKKVGIEIDIVAGCSIGSLVGAAYACDRL 55 (300)
T ss_pred HHHcCCCcCEEEEEcHHHHHHHHHHcCCh
Confidence 34468877789999999999999997654
No 233
>PLN03006 carbonate dehydratase
Probab=50.23 E-value=23 Score=26.52 Aligned_cols=32 Identities=22% Similarity=0.362 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeChHHHHHHHH
Q psy17377 22 TTATIDYVLNVTGKKKVITIGHSMGTTNVLVA 53 (106)
Q Consensus 22 l~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~ 53 (106)
..+.++|.+..++.+.+.++|||-=|.+...+
T Consensus 158 ~~aSLEYAV~~L~V~~IVV~GHs~CGaV~Aal 189 (301)
T PLN03006 158 TKAALEFSVNTLNVENILVIGHSRCGGIQALM 189 (301)
T ss_pred hhhhHHHHHHHhCCCEEEEecCCCchHHHHHh
Confidence 56799999999999999999999877666443
No 234
>KOG3253|consensus
Probab=49.60 E-value=6 Score=32.65 Aligned_cols=36 Identities=14% Similarity=0.232 Sum_probs=25.0
Q ss_pred CCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeec
Q psy17377 34 GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWA 71 (106)
Q Consensus 34 ~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~ 71 (106)
...+++|+|.|||+.++.......-+. .|.++|+++
T Consensus 248 pha~IiLvGrsmGAlVachVSpsnsdv--~V~~vVCig 283 (784)
T KOG3253|consen 248 PHAPIILVGRSMGALVACHVSPSNSDV--EVDAVVCIG 283 (784)
T ss_pred CCCceEEEecccCceeeEEeccccCCc--eEEEEEEec
Confidence 456899999999988777666543322 266667665
No 235
>PRK15219 carbonic anhydrase; Provisional
Probab=48.89 E-value=30 Score=25.04 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=28.7
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~ 54 (106)
.|+...++|.+..++.+.+.++|||-=|.+...+.
T Consensus 127 ~~~~~slEyAv~~L~v~~IvVlGHt~CGav~Aa~~ 161 (245)
T PRK15219 127 DDLLGSMEFACAVAGAKVVLVMGHTACGAVKGAID 161 (245)
T ss_pred cchhhHHHHHHHHcCCCEEEEecCCcchHHHHHHh
Confidence 45667899999999999999999998777655444
No 236
>PLN03014 carbonic anhydrase
Probab=48.50 E-value=25 Score=26.85 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~ 54 (106)
++.+.++|.+..++.+.+.++|||-=|.+...+.
T Consensus 205 ~v~asLEYAV~~L~V~~IVV~GHs~CGaV~Aa~~ 238 (347)
T PLN03014 205 GVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 238 (347)
T ss_pred cchhHHHHHHHHhCCCEEEEeCCCCchHHHHHHh
Confidence 4668999999999999999999998666655443
No 237
>cd07198 Patatin Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes PNPLA (1-9), TGL (3-5), ExoU-like, and SDP1-like subfamilies. There are some additional hypothetical proteins included in this family.
Probab=47.96 E-value=42 Score=22.19 Aligned_cols=34 Identities=21% Similarity=0.105 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcc
Q psy17377 25 TIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59 (106)
Q Consensus 25 ~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~ 59 (106)
+++.+.+ .+...-.+.|=|+|+.++..+++..+.
T Consensus 16 vl~aL~e-~gi~~d~v~GtSaGAi~aa~~a~g~~~ 49 (172)
T cd07198 16 VAKALRE-RGPLIDIIAGTSAGAIVAALLASGRDL 49 (172)
T ss_pred HHHHHHH-cCCCCCEEEEECHHHHHHHHHHcCCCH
Confidence 3344333 477777899999999999999987553
No 238
>PF10081 Abhydrolase_9: Alpha/beta-hydrolase family; InterPro: IPR012037 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=47.25 E-value=26 Score=26.08 Aligned_cols=41 Identities=15% Similarity=0.156 Sum_probs=32.2
Q ss_pred CCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhh
Q psy17377 35 KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75 (106)
Q Consensus 35 ~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~ 75 (106)
..|+++.|-|+|+.-+-......++..+++...+..+|...
T Consensus 108 RPkL~l~GeSLGa~g~~~af~~~~~~~~~vdGalw~GpP~~ 148 (289)
T PF10081_consen 108 RPKLYLYGESLGAYGGEAAFDGLDDLRDRVDGALWVGPPFF 148 (289)
T ss_pred CCeEEEeccCccccchhhhhccHHHhhhhcceEEEeCCCCC
Confidence 46899999999998877766666677778888877777654
No 239
>cd07227 Pat_Fungal_NTE1 Fungal patatin-like phospholipase domain containing protein 6. These are fungal Neuropathy Target Esterase (NTE), commonly referred to as NTE1. Patatin-like phospholipase. NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This family includes NTE1 from fungi.
Probab=47.07 E-value=40 Score=24.61 Aligned_cols=28 Identities=18% Similarity=0.004 Sum_probs=22.9
Q ss_pred HHHhCCCcEEEEEeChHHHHHHHHHHcC
Q psy17377 30 LNVTGKKKVITIGHSMGTTNVLVAGSLR 57 (106)
Q Consensus 30 ~~~~~~~~~~lvGHSmGg~i~l~~~~~~ 57 (106)
+++.+++--.+.|=|+|+.++..|++..
T Consensus 32 LeE~gi~~d~v~GtSaGAiiga~ya~g~ 59 (269)
T cd07227 32 LEEAGIPIDAIGGTSIGSFVGGLYAREA 59 (269)
T ss_pred HHHcCCCccEEEEECHHHHHHHHHHcCC
Confidence 3556777667899999999999999763
No 240
>PLN03019 carbonic anhydrase
Probab=47.02 E-value=26 Score=26.58 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~ 54 (106)
.+.+.++|.+..++.+.+.++|||-=|.+...+.
T Consensus 200 ~v~aSIEYAV~~L~V~~IVV~GHs~CGaVkAal~ 233 (330)
T PLN03019 200 GVGAAIEYAVLHLKVENIVVIGHSACGGIKGLMS 233 (330)
T ss_pred ccchhHHHHHHHhCCCEEEEecCCCchHHHHHHh
Confidence 4567899999999999999999998776655443
No 241
>COG1752 RssA Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=46.30 E-value=41 Score=24.59 Aligned_cols=29 Identities=17% Similarity=0.123 Sum_probs=24.3
Q ss_pred HHHHhCCCcEEEEEeChHHHHHHHHHHcC
Q psy17377 29 VLNVTGKKKVITIGHSMGTTNVLVAGSLR 57 (106)
Q Consensus 29 v~~~~~~~~~~lvGHSmGg~i~l~~~~~~ 57 (106)
.+++.+.+.-.+.|=|+|+.++..+++-+
T Consensus 32 aL~e~gi~~~~iaGtS~GAiva~l~A~g~ 60 (306)
T COG1752 32 ALEEAGIPIDVIAGTSAGAIVAALYAAGM 60 (306)
T ss_pred HHHHcCCCccEEEecCHHHHHHHHHHcCC
Confidence 34556888889999999999999999854
No 242
>PLN02154 carbonic anhydrase
Probab=46.27 E-value=33 Score=25.55 Aligned_cols=34 Identities=15% Similarity=0.335 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~ 54 (106)
...+.+++.+..++.+.+.++|||-=|.+...+.
T Consensus 151 ~~~aslEyAv~~L~v~~IvV~GHs~CGAV~Aal~ 184 (290)
T PLN02154 151 ETNSALEFAVTTLQVENIIVMGHSNCGGIAALMS 184 (290)
T ss_pred chhhHHHHHHHHhCCCEEEEecCCCchHHHHHHh
Confidence 4677899999999999999999998776665544
No 243
>PF00484 Pro_CA: Carbonic anhydrase; InterPro: IPR001765 Carbonic anhydrases (4.2.1.1 from EC) (CA) are zinc metalloenzymes which catalyze the reversible hydration of carbon dioxide. In Escherichia coli, CA (gene cynT) is involved in recycling carbon dioxide formed in the bicarbonate-dependent decomposition of cyanate by cyanase (gene cynS). By this action, it prevents the depletion of cellular bicarbonate []. In photosynthetic bacteria and plant chloroplast, CA is essential to inorganic carbon fixation []. Prokaryotic and plant chloroplast CA are structurally and evolutionary related and form a family distinct from the one which groups the many different forms of eukaryotic CA's (see IPR001148 from INTERPRO). Hypothetical proteins yadF from Escherichia coli and HI1301 from Haemophilus influenzae also belong to this family. This family also includes, YbcF and related proteins, which are inactive homologues of bacterial carbonic anhydrase.; GO: 0004089 carbonate dehydratase activity, 0008270 zinc ion binding; PDB: 1DDZ_B 3LAS_A 2W3N_A 2W3Q_A 1G5C_F 3E2A_A 3E2X_B 2A8C_A 2A8D_D 3E3F_A ....
Probab=46.23 E-value=50 Score=21.43 Aligned_cols=35 Identities=20% Similarity=0.274 Sum_probs=26.0
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~ 54 (106)
.+..+.+++....++.+.+.++||+-=|++...+.
T Consensus 39 ~~~~~sle~av~~l~v~~IiV~gHt~CGa~~~~~~ 73 (153)
T PF00484_consen 39 DSALASLEYAVYHLGVKEIIVCGHTDCGAIKAALD 73 (153)
T ss_dssp HHHHHHHHHHHHTST-SEEEEEEETT-HHHHHHHH
T ss_pred cchhhheeeeeecCCCCEEEEEcCCCchHHHHHHh
Confidence 34556788888889999999999998888775433
No 244
>cd07212 Pat_PNPLA9 Patatin-like phospholipase domain containing protein 9. PNPLA9 is a Ca-independent phospholipase that catalyzes the hydrolysis of glycerophospholipids at the sn-2 position. PNPLA9 is also known as PLA2G6 (phospholipase A2 group VI) or iPLA2beta. PLA2G6 is stimulated by ATP and inhibited by bromoenol lactone (BEL). In humans, PNPLA9 in expressed ubiquitously and is involved in signal transduction, cell proliferation, and apoptotic cell death. Mutations in human PLA2G6 leads to infantile neuroaxonal dystrophy (INAD) and idiopathic neurodegeneration with brain iron accumulation (NBIA). This family includes PLA2G6 from Homo sapiens and Rattus norvegicus.
Probab=45.23 E-value=58 Score=24.15 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCC---cE-EEEEeChHHHHHHHHHHcCc
Q psy17377 25 TIDYVLNVTGKK---KV-ITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 25 ~i~~v~~~~~~~---~~-~lvGHSmGg~i~l~~~~~~p 58 (106)
+++.+.+.++.+ .+ .+.|-|+||.++..++..++
T Consensus 17 vL~~le~~~g~~i~~~fD~i~GTStGgiIA~~la~g~s 54 (312)
T cd07212 17 MLIAIEKALGRPIRELFDWIAGTSTGGILALALLHGKS 54 (312)
T ss_pred HHHHHHHHhCCCchhhccEEEeeChHHHHHHHHHcCCC
Confidence 344454545542 12 47999999999999997543
No 245
>KOG2182|consensus
Probab=44.87 E-value=35 Score=27.40 Aligned_cols=43 Identities=21% Similarity=0.074 Sum_probs=36.3
Q ss_pred ccccHHHHHHHHHHHhCC---CcEEEEEeChHHHHHHHHHHcCccc
Q psy17377 18 GIYDTTATIDYVLNVTGK---KKVITIGHSMGTTNVLVAGSLRPEY 60 (106)
Q Consensus 18 ~~~Dl~~~i~~v~~~~~~---~~~~lvGHSmGg~i~l~~~~~~p~~ 60 (106)
+.+|++.+|+.+..+.+. .+.+..|-|--|.++..+=..+||.
T Consensus 151 ALaDla~fI~~~n~k~n~~~~~~WitFGgSYsGsLsAW~R~~yPel 196 (514)
T KOG2182|consen 151 ALADLAEFIKAMNAKFNFSDDSKWITFGGSYSGSLSAWFREKYPEL 196 (514)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCCeEEECCCchhHHHHHHHHhCchh
Confidence 468888998887777643 2788999999999999999999997
No 246
>PRK10437 carbonic anhydrase; Provisional
Probab=44.23 E-value=39 Score=24.02 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~ 54 (106)
+..+.+++....++.+.+.++||+-=|++...+.
T Consensus 76 ~~~~~leyAV~~L~v~~IvV~GHt~CG~V~Aal~ 109 (220)
T PRK10437 76 NCLSVVQYAVDVLEVEHIIICGHYGCGGVQAAVE 109 (220)
T ss_pred chHHHHHHHHHHcCCCEEEEeCCCCchHHHHHHc
Confidence 4567889989999999999999998777765543
No 247
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=43.33 E-value=46 Score=24.78 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccc
Q psy17377 23 TATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKIS 65 (106)
Q Consensus 23 ~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~ 65 (106)
+.++|.++......=-.++|-|+|+.-+..|.+..+.+..+++
T Consensus 27 AGVLD~fl~a~~~~f~~~~GvSAGA~n~~aYls~Q~gra~~~~ 69 (292)
T COG4667 27 AGVLDEFLRANFNPFDLVVGVSAGALNLVAYLSKQRGRARRVI 69 (292)
T ss_pred HHHHHHHHHhccCCcCeeeeecHhHHhHHHHhhcCCchHHHHH
Confidence 4577777754333333579999999999999999998865553
No 248
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=42.79 E-value=20 Score=27.27 Aligned_cols=46 Identities=15% Similarity=0.053 Sum_probs=25.5
Q ss_pred CccccccccccccccccHHHHHHHHHHHh---CCCcEEEEEeChHHHHH
Q psy17377 5 YETYMILVKFHEIGIYDTTATIDYVLNVT---GKKKVITIGHSMGTTNV 50 (106)
Q Consensus 5 ~~~~~w~~s~~~~~~~Dl~~~i~~v~~~~---~~~~~~lvGHSmGg~i~ 50 (106)
....-|...+...+..-.....+.+++.. +.-+-+.+=||+||.++
T Consensus 55 g~gnn~a~G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTG 103 (382)
T cd06059 55 GSGNNWARGYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTG 103 (382)
T ss_pred cccccccccccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcc
Confidence 44567777776655233333333343333 33344688999998664
No 249
>cd03378 beta_CA_cladeC Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=42.27 E-value=53 Score=22.01 Aligned_cols=31 Identities=23% Similarity=0.439 Sum_probs=25.1
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHH
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVL 51 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l 51 (106)
+..+.+++....++.+.+.++|||-=|.+..
T Consensus 77 ~~~~sl~yav~~l~v~~IvV~GHt~CG~~~a 107 (154)
T cd03378 77 DVLGSLEYAVEVLGVPLVVVLGHESCGAVAA 107 (154)
T ss_pred hHHHHHHHHHHHhCCCEEEEEcCCCccHHHH
Confidence 4567788888999999999999999555543
No 250
>cd07207 Pat_ExoU_VipD_like ExoU and VipD-like proteins; homologus to patatin, cPLA2, and iPLA2. ExoU, a 74-kDa enzyme, is a potent virulence factor of Pseudomonas aeruginosa. One of the pathogenic mechanisms of P. aeruginosa is to induce cytotoxicity by the injection of effector proteins (e.g. ExoU) using the type III secretion (T3S) system. ExoU is homologus to patatin and also has the conserved catalytic residues of mammalian calcium-independent (iPLA2) and cytosolic (cPLA2) PLA2. In vitro, ExoU cytotoxity is blocked by the inhibitor of cytosolic and Ca2-independent phospholipase A2 (cPLA2 and iPLA2) enzymes, suggesting that phospholipase A2 inhibitors may represent a novel mode of treatment for acute P. aeruginosa infections. ExoU requires eukaryotic superoxide dismutase as a cofactor and cleaves phosphatidylcholine and phosphatidylethanolamine in vitro. VipD, a 69-kDa cytosolic protein, belongs to the members of Legionella pneumophila family and is homologus to ExoU from Pseudomona
Probab=40.80 E-value=68 Score=21.36 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 25 TIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 25 ~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
+++.+.+ .+...-.+.|=|.|+.++..+++..+
T Consensus 17 vl~~L~e-~~~~~d~i~GtSaGai~aa~~a~g~~ 49 (194)
T cd07207 17 ALKALEE-AGILKKRVAGTSAGAITAALLALGYS 49 (194)
T ss_pred HHHHHHH-cCCCcceEEEECHHHHHHHHHHcCCC
Confidence 3444433 46666789999999999999998654
No 251
>cd07209 Pat_hypo_Ecoli_Z1214_like Hypothetical patatin similar to Z1214 protein of Escherichia coli. Patatin-like phospholipase similar to Z1214 protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=40.72 E-value=63 Score=22.34 Aligned_cols=32 Identities=22% Similarity=0.300 Sum_probs=24.1
Q ss_pred HHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 26 i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
++.+.+ .+..--.+.|-|.|+.++..+++..+
T Consensus 17 l~aL~e-~g~~~d~i~GtS~GAl~aa~~a~~~~ 48 (215)
T cd07209 17 LKALAE-AGIEPDIISGTSIGAINGALIAGGDP 48 (215)
T ss_pred HHHHHH-cCCCCCEEEEECHHHHHHHHHHcCCc
Confidence 333333 46656678999999999999998765
No 252
>COG0288 CynT Carbonic anhydrase [Inorganic ion transport and metabolism]
Probab=39.74 E-value=36 Score=23.91 Aligned_cols=36 Identities=19% Similarity=0.282 Sum_probs=29.4
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHH
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~ 55 (106)
.++-+.+++..+.++.+.++++||+-=|++...+..
T Consensus 76 ~~~l~sleyAv~~L~v~~IiV~GH~~CGav~aa~~~ 111 (207)
T COG0288 76 GSVLRSLEYAVYVLGVKEIIVCGHTDCGAVKAALDD 111 (207)
T ss_pred cchhHHHHHHHHHcCCCEEEEecCCCcHHHHhcccc
Confidence 466678999999999999999999987777665553
No 253
>cd07210 Pat_hypo_W_succinogenes_WS1459_like Hypothetical patatin similar to WS1459 of Wolinella succinogenes. Patatin-like phospholipase. This family predominantly consists of bacterial patatin glycoproteins. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=38.13 E-value=84 Score=21.96 Aligned_cols=33 Identities=18% Similarity=0.050 Sum_probs=24.2
Q ss_pred HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 25 TIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 25 ~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
+++.+.+ .+.+.-.+.|=|.|+.++..+++..+
T Consensus 18 vL~aL~e-~gi~~~~i~GtSaGAi~aa~~a~g~~ 50 (221)
T cd07210 18 FLAALLE-MGLEPSAISGTSAGALVGGLFASGIS 50 (221)
T ss_pred HHHHHHH-cCCCceEEEEeCHHHHHHHHHHcCCC
Confidence 3444433 46666679999999999999997653
No 254
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=36.98 E-value=1.2e+02 Score=20.46 Aligned_cols=49 Identities=16% Similarity=0.137 Sum_probs=31.8
Q ss_pred cHHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhcc
Q psy17377 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLG 77 (106)
Q Consensus 21 Dl~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~~ 77 (106)
|+.+.++.+.++ +...+.+.| |+.+.-.+... +.++.+. +.++|+..-.
T Consensus 122 dl~~~l~~L~~~-g~~~i~v~G---G~~l~~~~l~~--gLvDEl~--l~i~Pv~lG~ 170 (200)
T PF01872_consen 122 DLEEALRRLKER-GGKDILVEG---GGSLNGSFLRA--GLVDELS--LTIAPVLLGG 170 (200)
T ss_dssp HHHHHHHHHHHT-TTSEEEEEE---HHHHHHHHHHT--T--SEEE--EEEESEE-SS
T ss_pred CHHHHHHHHHhc-CCCEEEEec---hHHHHHHHHhC--CCCCEEE--EEEeeEEeCC
Confidence 477888888777 888898887 67766666544 4566564 3577765544
No 255
>PLN02752 [acyl-carrier protein] S-malonyltransferase
Probab=36.08 E-value=31 Score=25.62 Aligned_cols=17 Identities=29% Similarity=0.446 Sum_probs=14.0
Q ss_pred EEEEeChHHHHHHHHHH
Q psy17377 39 ITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 39 ~lvGHSmGg~i~l~~~~ 55 (106)
.++|||+|=..++..+.
T Consensus 127 ~~~GHSlGE~aA~~~AG 143 (343)
T PLN02752 127 VCAGLSLGEYTALVFAG 143 (343)
T ss_pred eeeeccHHHHHHHHHhC
Confidence 57999999988877664
No 256
>cd07230 Pat_TGL4-5_like Triacylglycerol lipase 4 and 5. TGL4 and TGL5 are triacylglycerol lipases that are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. Tgl4 is a functional ortholog of mammalian adipose TG lipase (ATGL) and is phosphorylated and activated by cyclin-dependent kinase 1 (Cdk1/Cdc28). TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. This family includes TGL4 (STC1) and TGL5 (STC2) from Saccharomyces cerevisiae.
Probab=34.54 E-value=53 Score=25.60 Aligned_cols=28 Identities=18% Similarity=0.090 Sum_probs=22.6
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHcCccc
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSLRPEY 60 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~~p~~ 60 (106)
.+..+=.+.|=|.|+.++..+++..++.
T Consensus 98 ~gl~p~vIsGTSaGAivAal~as~~~ee 125 (421)
T cd07230 98 ANLLPRIISGSSAGSIVAAILCTHTDEE 125 (421)
T ss_pred cCCCCCEEEEECHHHHHHHHHHcCCHHH
Confidence 3555668999999999999999876654
No 257
>PLN00220 tubulin beta chain; Provisional
Probab=34.39 E-value=63 Score=25.29 Aligned_cols=40 Identities=15% Similarity=0.055 Sum_probs=22.2
Q ss_pred ccccccccccccHHHHHHHHHHHhC---CCcEEEEEeChHHHH
Q psy17377 10 ILVKFHEIGIYDTTATIDYVLNVTG---KKKVITIGHSMGTTN 49 (106)
Q Consensus 10 w~~s~~~~~~~Dl~~~i~~v~~~~~---~~~~~lvGHSmGg~i 49 (106)
|+..+...+..-...+.+.+++... .-+-+++=||+||.+
T Consensus 101 wa~G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGT 143 (447)
T PLN00220 101 WAKGHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGT 143 (447)
T ss_pred cCceeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCc
Confidence 5545544443333444555554432 224578899998766
No 258
>PTZ00387 epsilon tubulin; Provisional
Probab=33.93 E-value=67 Score=25.41 Aligned_cols=42 Identities=17% Similarity=0.040 Sum_probs=23.6
Q ss_pred cccccccccccccHHHHHHHHHHHh---CCCcEEEEEeChHHHHH
Q psy17377 9 MILVKFHEIGIYDTTATIDYVLNVT---GKKKVITIGHSMGTTNV 50 (106)
Q Consensus 9 ~w~~s~~~~~~~Dl~~~i~~v~~~~---~~~~~~lvGHSmGg~i~ 50 (106)
=|+..+...+..-.....+.+++.. +.-+-+.+=||+||..+
T Consensus 101 nwa~G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTG 145 (465)
T PTZ00387 101 NWAVGHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTG 145 (465)
T ss_pred CcCCCcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcc
Confidence 4665655554333444455555443 22234578999998764
No 259
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=33.85 E-value=59 Score=25.37 Aligned_cols=43 Identities=16% Similarity=0.077 Sum_probs=24.6
Q ss_pred cccccccccccccccHHHHHHHHHHHhC---CCcEEEEEeChHHHH
Q psy17377 7 TYMILVKFHEIGIYDTTATIDYVLNVTG---KKKVITIGHSMGTTN 49 (106)
Q Consensus 7 ~~~w~~s~~~~~~~Dl~~~i~~v~~~~~---~~~~~lvGHSmGg~i 49 (106)
..=|...+.+.+..-...+.+.+++... .-+-+++=||+||.+
T Consensus 99 gnnwa~Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~sl~GGT 144 (434)
T cd02186 99 ANNFARGHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFHSFGGGT 144 (434)
T ss_pred CcccccccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEeccCCCc
Confidence 3446666665554444445555555432 224478889999866
No 260
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=33.76 E-value=39 Score=22.98 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=19.2
Q ss_pred HHHHHHHHhCCCcEEEEEeChHHHHHH
Q psy17377 25 TIDYVLNVTGKKKVITIGHSMGTTNVL 51 (106)
Q Consensus 25 ~i~~v~~~~~~~~~~lvGHSmGg~i~l 51 (106)
..+.+++.+...+.+++=||+||.++.
T Consensus 72 ~~~~ir~~le~~d~~~i~~slgGGTGs 98 (192)
T smart00864 72 SLDEIREELEGADGVFITAGMGGGTGT 98 (192)
T ss_pred HHHHHHHHhcCCCEEEEeccCCCCccc
Confidence 445566666666888999999986633
No 261
>cd07232 Pat_PLPL Patain-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants and fungi. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=32.91 E-value=57 Score=25.29 Aligned_cols=35 Identities=14% Similarity=0.084 Sum_probs=25.0
Q ss_pred HHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcccc
Q psy17377 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQ 61 (106)
Q Consensus 26 i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~~ 61 (106)
++.+.+ .+...=.+.|-|.|+.++..+++..++..
T Consensus 86 lkaL~e-~gllp~iI~GtSAGAivaalla~~t~~el 120 (407)
T cd07232 86 VKALLD-ADLLPNVISGTSGGSLVAALLCTRTDEEL 120 (407)
T ss_pred HHHHHh-CCCCCCEEEEECHHHHHHHHHHcCCHHHH
Confidence 333333 35556679999999999999998655443
No 262
>PRK08671 methionine aminopeptidase; Provisional
Probab=32.23 E-value=26 Score=25.64 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=22.2
Q ss_pred cccHHHHHHHHHHHhCCCcE-EEEEeChHH
Q psy17377 19 IYDTTATIDYVLNVTGKKKV-ITIGHSMGT 47 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~-~lvGHSmGg 47 (106)
..|+.+.++.+++..+..++ ++.||++|=
T Consensus 127 ~~dv~~~i~~vi~~~G~~~~~~~~GHgiG~ 156 (291)
T PRK08671 127 VGEIGRVIEETIRSYGFKPIRNLTGHGLER 156 (291)
T ss_pred HHHHHHHHHHHHHHcCCcccCCCcccCcCC
Confidence 46777788888888877653 689999983
No 263
>cd01088 MetAP2 Methionine Aminopeptidase 2. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=32.17 E-value=26 Score=25.58 Aligned_cols=29 Identities=24% Similarity=0.337 Sum_probs=22.3
Q ss_pred cccHHHHHHHHHHHhCCCcE-EEEEeChHH
Q psy17377 19 IYDTTATIDYVLNVTGKKKV-ITIGHSMGT 47 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~-~lvGHSmGg 47 (106)
..|+.+.++.+.+..|..++ ++.||++|-
T Consensus 126 ~~dV~~ai~~~i~~~G~~~~~~~~GHgig~ 155 (291)
T cd01088 126 LGEIGEAIEEVIESYGFKPIRNLTGHSIER 155 (291)
T ss_pred HHHHHHHHHHHHHHcCCEEeecCCccCccC
Confidence 56777788888888887654 689999984
No 264
>cd01086 MetAP1 Methionine Aminopeptidase 1. E.C. 3.4.11.18. Also known as methionyl aminopeptidase and Peptidase M. Catalyzes release of N-terminal amino acids, preferentially methionine, from peptides and arylamides.
Probab=32.11 E-value=33 Score=23.84 Aligned_cols=31 Identities=23% Similarity=0.165 Sum_probs=22.3
Q ss_pred cccHHHHHHHHHHHhCCCc-EEEEEeChHHHH
Q psy17377 19 IYDTTATIDYVLNVTGKKK-VITIGHSMGTTN 49 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~-~~lvGHSmGg~i 49 (106)
..|+.+.++.++++.+... ...+||++|-.+
T Consensus 134 ~~~v~~~~~~~~~~~G~~~~~~~~GHgiG~~~ 165 (238)
T cd01086 134 IGDIGHAIEKYAEKNGYSVVREFGGHGIGRKF 165 (238)
T ss_pred HHHHHHHHHHHHHHcCcceecCccccCCCCcc
Confidence 4566677777777777754 357999999875
No 265
>cd07228 Pat_NTE_like_bacteria Bacterial patatin-like phospholipase domain containing protein 6. Bacterial patatin-like phospholipase domain containing protein 6. PNPLA6 is commonly known as Neuropathy Target Esterase (NTE). NTE has at least two functional domains: the N-terminal domain putatively regulatory domain and the C-terminal catalytic domain which shows esterase activity. NTE shows phospholipase activity for lysophosphatidylcholine (LPC) and phosphatidylcholine (PC). Exposure of NTE to organophosphates leads to organophosphate-induced delayed neurotoxicity (OPIDN). OPIDN is a progressive neurological condition that is characterized by weakness, paralysis, pain, and paresthesia. This group includes YCHK and rssA from Escherichia coli as well as Ylbk from Bacillus amyloliquefaciens.
Probab=30.74 E-value=1.3e+02 Score=19.90 Aligned_cols=34 Identities=15% Similarity=0.088 Sum_probs=24.4
Q ss_pred HHHHHHHHhCCCcEEEEEeChHHHHHHHHHHcCcc
Q psy17377 25 TIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59 (106)
Q Consensus 25 ~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~ 59 (106)
+++.+. +.+..--.+.|=|.|+.++..+++..+.
T Consensus 18 vl~~L~-e~g~~~d~i~GtSaGAi~aa~~a~g~~~ 51 (175)
T cd07228 18 VLRALE-EEGIEIDIIAGSSIGALVGALYAAGHLD 51 (175)
T ss_pred HHHHHH-HCCCCeeEEEEeCHHHHHHHHHHcCCCH
Confidence 344443 3466556789999999999999887543
No 266
>COG1505 Serine proteases of the peptidase family S9A [Amino acid transport and metabolism]
Probab=30.15 E-value=8.1 Score=31.65 Aligned_cols=55 Identities=22% Similarity=0.096 Sum_probs=40.7
Q ss_pred cccHHHHHHHHHHH--hCCCcEEEEEeChHHHHHHHHHHcCcccccccceEEeechhhhc
Q psy17377 19 IYDTTATIDYVLNV--TGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFL 76 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~--~~~~~~~lvGHSmGg~i~l~~~~~~p~~~~~v~~~v~~~P~~~~ 76 (106)
..|+.|+.+++.++ +.-+++-+-|-|-||.+.-....++||....+ ++--|+..+
T Consensus 481 fdDf~AVaedLi~rgitspe~lgi~GgSNGGLLvg~alTQrPelfgA~---v~evPllDM 537 (648)
T COG1505 481 FDDFIAVAEDLIKRGITSPEKLGIQGGSNGGLLVGAALTQRPELFGAA---VCEVPLLDM 537 (648)
T ss_pred hHHHHHHHHHHHHhCCCCHHHhhhccCCCCceEEEeeeccChhhhCce---eeccchhhh
Confidence 57888999998775 22358899999999999999999999975433 344454433
No 267
>cd07224 Pat_like Patatin-like phospholipase. Patatin-like phospholipase. This family consists of various patatin glycoproteins from plants. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of lipid acyl hydrolase, catalysing the cleavage of fatty acids from membrane lipids. Members of this family have been found also in vertebrates.
Probab=29.25 E-value=1.3e+02 Score=21.18 Aligned_cols=33 Identities=15% Similarity=0.183 Sum_probs=24.0
Q ss_pred HHHHHHHHhCCC--cEEEEEeChHHHHHHHHHHcCc
Q psy17377 25 TIDYVLNVTGKK--KVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 25 ~i~~v~~~~~~~--~~~lvGHSmGg~i~l~~~~~~p 58 (106)
+++.+.+ .++. .-.+.|=|.|+.++..|++..+
T Consensus 17 Vl~~L~e-~gi~~~~~~i~G~SAGAl~aa~~asg~~ 51 (233)
T cd07224 17 VLSLLIE-AGVINETTPLAGASAGSLAAACSASGLS 51 (233)
T ss_pred HHHHHHH-cCCCCCCCEEEEEcHHHHHHHHHHcCCC
Confidence 4455544 4554 3379999999999999998754
No 268
>cd07208 Pat_hypo_Ecoli_yjju_like Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.
Probab=29.11 E-value=1.3e+02 Score=21.31 Aligned_cols=35 Identities=26% Similarity=0.208 Sum_probs=24.5
Q ss_pred HHHHHHHHhCCC-cEEEEEeChHHHHHHHHHHcCccc
Q psy17377 25 TIDYVLNVTGKK-KVITIGHSMGTTNVLVAGSLRPEY 60 (106)
Q Consensus 25 ~i~~v~~~~~~~-~~~lvGHSmGg~i~l~~~~~~p~~ 60 (106)
+++.+.+ .+.. -=.++|-|.|+.++..+++..+..
T Consensus 16 vl~al~e-~~~~~fd~i~GtSaGAi~a~~~~~g~~~~ 51 (266)
T cd07208 16 VLDAFLE-AGIRPFDLVIGVSAGALNAASYLSGQRGR 51 (266)
T ss_pred HHHHHHH-cCCCCCCEEEEECHHHHhHHHHHhCCcch
Confidence 3444444 3444 347899999999999999876543
No 269
>KOG1578|consensus
Probab=29.01 E-value=33 Score=25.34 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Q psy17377 22 TTATIDYVLNVTGKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 22 l~~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~ 54 (106)
..+.+++.+..++.+++.++|||.=|.+...+.
T Consensus 140 ~~AalE~aV~~lkvenIiv~ghs~cgGik~~m~ 172 (276)
T KOG1578|consen 140 VGAALEYAVTTLKVENIIVIGHSLCGGIKGLMS 172 (276)
T ss_pred ccchHHHHHHHhccceEEEeccccCCchhhccc
Confidence 347889988999999999999999777765544
No 270
>cd07231 Pat_SDP1-like Sugar-Dependent 1 like lipase. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This acyl-hydrolase domain is homologus to yeast triacylglycerol lipase 3 and human adipose triglyceride lipase. This family includes SDP1 from Arabidopsis thaliana.
Probab=27.00 E-value=87 Score=23.73 Aligned_cols=26 Identities=12% Similarity=0.119 Sum_probs=20.6
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHcCc
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~~p 58 (106)
.+..+-.+.|-|.|+.++..+++..+
T Consensus 93 ~gl~p~~i~GsSaGAivaa~~~~~t~ 118 (323)
T cd07231 93 HQLLPRVIAGSSVGSIVCAIIATRTD 118 (323)
T ss_pred cCCCCCEEEEECHHHHHHHHHHcCCH
Confidence 46666679999999999999887543
No 271
>TIGR00501 met_pdase_II methionine aminopeptidase, type II. Methionine aminopeptidase (map) is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. The role of this protein in general is to produce the mature amino end of cytosolic proteins by removing the N-terminal methionine. This model describes type II, among which the eukaryotic members typically have an N-terminal extension not present in archaeal members. It can act cotranslationally. The enzyme from rat has been shown to associate with translation initiation factor 2 (IF-2) and may have a role in translational regulation.
Probab=26.79 E-value=35 Score=25.04 Aligned_cols=28 Identities=29% Similarity=0.385 Sum_probs=22.0
Q ss_pred cccHHHHHHHHHHHhCCCcE-EEEEeChH
Q psy17377 19 IYDTTATIDYVLNVTGKKKV-ITIGHSMG 46 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~-~lvGHSmG 46 (106)
..|+.+.++.+.+..|..++ ++.||++|
T Consensus 130 ~~dV~~ai~~vi~~~G~~~i~~~~GHgig 158 (295)
T TIGR00501 130 VGEIGKAIQEVIESYGVKPISNLTGHSMA 158 (295)
T ss_pred HHHHHHHHHHHHHHcCCeeecCCCCccee
Confidence 56777888888888887654 68999998
No 272
>PRK07281 methionine aminopeptidase; Reviewed
Probab=26.38 E-value=54 Score=24.07 Aligned_cols=28 Identities=32% Similarity=0.357 Sum_probs=18.0
Q ss_pred cccHHHHHHHHHHHhCCCcE-EEEEeChH
Q psy17377 19 IYDTTATIDYVLNVTGKKKV-ITIGHSMG 46 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~-~lvGHSmG 46 (106)
..|+...++.+.+..+...+ +.+||+.|
T Consensus 174 ~~di~~a~~~~~~~~G~~~~~~~~GHGIG 202 (286)
T PRK07281 174 IGDIGAAIQEYAESRGYGVVRDLVGHGVG 202 (286)
T ss_pred HHHHHHHHHHHHHHcCCccCCCeeeeeCC
Confidence 34555555556665666543 57999999
No 273
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=26.14 E-value=93 Score=24.17 Aligned_cols=28 Identities=21% Similarity=0.202 Sum_probs=22.3
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHcCccc
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSLRPEY 60 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~~p~~ 60 (106)
.+..+=.+.|-|.|+.++..++...++.
T Consensus 108 ~gl~p~~i~GtS~Gaivaa~~a~~~~~e 135 (391)
T cd07229 108 RGLLPRIITGTATGALIAALVGVHTDEE 135 (391)
T ss_pred cCCCCceEEEecHHHHHHHHHHcCCHHH
Confidence 4666667999999999999999865443
No 274
>PF00450 Peptidase_S10: Serine carboxypeptidase; InterPro: IPR001563 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S10 (clan SC). The type example is carboxypeptidase Y from Saccharomyces cerevisiae (Baker's yeast) []. All known carboxypeptidases are either metallo carboxypeptidases or serine carboxypeptidases (3.4.16.5 from EC and 3.4.16.6 from EC). The catalytic activity of the serine carboxypeptidases, like that of the trypsin family serine proteases, is provided by a charge relay system involving an aspartic acid residue hydrogen-bonded to a histidine, which is itself hydrogen-bonded to a serine []. The sequences surrounding the active site serine and histidine residues are highly conserved in all the serine carboxypeptidases.; GO: 0004185 serine-type carboxypeptidase activity, 0006508 proteolysis; PDB: 1AC5_A 1WHS_B 3SC2_B 1WHT_A 1BCR_A 1BCS_A 1GXS_A 1IVY_A 1WPX_A 1YSC_A ....
Probab=24.20 E-value=1.4e+02 Score=22.16 Aligned_cols=57 Identities=11% Similarity=-0.045 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHH---hCCCcEEEEEeChHHHHHHHHHHc----Cccc---ccccceEEeechhhhc
Q psy17377 20 YDTTATIDYVLNV---TGKKKVITIGHSMGTTNVLVAGSL----RPEY---QSKISLSILWAQAAFL 76 (106)
Q Consensus 20 ~Dl~~~i~~v~~~---~~~~~~~lvGHSmGg~i~l~~~~~----~p~~---~~~v~~~v~~~P~~~~ 76 (106)
.|+-.++....++ ....++++.|-|.||.-+-.++.. ..+. .-.++++++-.|....
T Consensus 117 ~~~~~fl~~f~~~~p~~~~~~~yi~GESYgG~yvP~~a~~i~~~~~~~~~~~inLkGi~IGng~~dp 183 (415)
T PF00450_consen 117 EDLYEFLQQFFQKFPEYRSNPLYIAGESYGGHYVPALASYILQQNKKGDQPKINLKGIAIGNGWIDP 183 (415)
T ss_dssp HHHHHHHHHHHHHSGGGTTSEEEEEEETTHHHHHHHHHHHHHHHTCC--STTSEEEEEEEESE-SBH
T ss_pred HHHHHHHHHhhhhhhhccCCCEEEEccccccccchhhHHhhhhccccccccccccccceecCccccc
Confidence 4444444443333 234589999999999986655543 2110 1246666665555433
No 275
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=24.12 E-value=1.6e+02 Score=17.55 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=26.9
Q ss_pred ccHHHHHHHHHHHh---CCCcEEEEEeChHHHHHHHHHHcC
Q psy17377 20 YDTTATIDYVLNVT---GKKKVITIGHSMGTTNVLVAGSLR 57 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~---~~~~~~lvGHSmGg~i~l~~~~~~ 57 (106)
..+...++++.+.. +-+++-++|-|-|=.++...++.+
T Consensus 21 ~~V~~qI~yvk~~~~~~GpK~VLViGaStGyGLAsRIa~aF 61 (78)
T PF12242_consen 21 RNVENQIEYVKSQGKINGPKKVLVIGASTGYGLASRIAAAF 61 (78)
T ss_dssp HHHHHHHHHHHHC---TS-SEEEEES-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCCceEEEEecCCcccHHHHHHHHh
Confidence 45667888887743 446888999999988887777664
No 276
>PRK12318 methionine aminopeptidase; Provisional
Probab=24.07 E-value=46 Score=24.41 Aligned_cols=28 Identities=25% Similarity=0.472 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHHHhCCCcE-EEEEeChH
Q psy17377 19 IYDTTATIDYVLNVTGKKKV-ITIGHSMG 46 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~-~lvGHSmG 46 (106)
..|+.+.++.+.+..+...+ +.+||++|
T Consensus 184 ~~dv~~a~~~~~~~~G~~~~~~~~GHgIG 212 (291)
T PRK12318 184 LYEIGEVIENCADKYGFSVVDQFVGHGVG 212 (291)
T ss_pred HHHHHHHHHHHHHHcCCccCCCcccCCcC
Confidence 45566666666776776532 57999999
No 277
>PRK13018 cell division protein FtsZ; Provisional
Probab=23.82 E-value=70 Score=24.66 Aligned_cols=31 Identities=16% Similarity=0.126 Sum_probs=21.9
Q ss_pred HHHHHHHHHhCCCcEEEEEeChHHHHHHHHH
Q psy17377 24 ATIDYVLNVTGKKKVITIGHSMGTTNVLVAG 54 (106)
Q Consensus 24 ~~i~~v~~~~~~~~~~lvGHSmGg~i~l~~~ 54 (106)
...+.+++.+.....+++-|||||.++.-++
T Consensus 101 e~~d~I~~~le~~D~vfI~aGLGGGTGSGaa 131 (378)
T PRK13018 101 ESRDEIKEVLKGADLVFVTAGMGGGTGTGAA 131 (378)
T ss_pred HHHHHHHHHhcCCCEEEEEeeccCcchhhHH
Confidence 3445566666667789999999997755443
No 278
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=23.79 E-value=90 Score=23.69 Aligned_cols=29 Identities=17% Similarity=0.119 Sum_probs=19.6
Q ss_pred HHHHHHHHhCCCcEEEEEeChHHHHHHHH
Q psy17377 25 TIDYVLNVTGKKKVITIGHSMGTTNVLVA 53 (106)
Q Consensus 25 ~i~~v~~~~~~~~~~lvGHSmGg~i~l~~ 53 (106)
..+.+++.+......++-|||||.++.-+
T Consensus 91 ~~d~Ir~~le~~D~vfI~aglGGGTGSG~ 119 (349)
T TIGR00065 91 SRDEIRKLLEGADMVFITAGMGGGTGTGA 119 (349)
T ss_pred HHHHHHHHHhCCCEEEEEEeccCccchhH
Confidence 44456666666677788999998774433
No 279
>KOG1202|consensus
Probab=23.72 E-value=1.3e+02 Score=27.74 Aligned_cols=32 Identities=19% Similarity=0.081 Sum_probs=23.5
Q ss_pred HHHHhCCCcEEEEEeChHHHHHHHHHHcCccc
Q psy17377 29 VLNVTGKKKVITIGHSMGTTNVLVAGSLRPEY 60 (106)
Q Consensus 29 v~~~~~~~~~~lvGHSmGg~i~l~~~~~~p~~ 60 (106)
+++.-...+..++|+|.|+-+++.++..-.+.
T Consensus 2175 irkvQP~GPYrl~GYSyG~~l~f~ma~~Lqe~ 2206 (2376)
T KOG1202|consen 2175 IRKVQPEGPYRLAGYSYGACLAFEMASQLQEQ 2206 (2376)
T ss_pred HHhcCCCCCeeeeccchhHHHHHHHHHHHHhh
Confidence 33333345889999999999999998764443
No 280
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=23.58 E-value=1.2e+02 Score=23.14 Aligned_cols=14 Identities=29% Similarity=0.275 Sum_probs=10.5
Q ss_pred cEEEEEeChHHHHH
Q psy17377 37 KVITIGHSMGTTNV 50 (106)
Q Consensus 37 ~~~lvGHSmGg~i~ 50 (106)
+-+.+=||+||.++
T Consensus 100 ~gf~i~~sl~GGTG 113 (379)
T cd02190 100 QSFFILHSLGGGTG 113 (379)
T ss_pred ceEEEEeecCCCcc
Confidence 34788999998663
No 281
>cd07204 Pat_PNPLA_like Patatin-like phospholipase domain containing protein family. Members of this family share a patain domain, initially discovered in potato tubers. PNPLA protein members show non-specific hydrolase activity with a variety of substrates such as triacylglycerol, phospholipids, and retinylesters. It contains the lipase consensus sequence (Gly-X-Ser-X-Gly). Nomenclature of PNPLA family could be misleading as some of the mammalian members of this family show hydrolase, but no phospholipase activity.
Probab=23.31 E-value=1.9e+02 Score=20.44 Aligned_cols=20 Identities=20% Similarity=0.003 Sum_probs=18.0
Q ss_pred EEEEeChHHHHHHHHHHcCc
Q psy17377 39 ITIGHSMGTTNVLVAGSLRP 58 (106)
Q Consensus 39 ~lvGHSmGg~i~l~~~~~~p 58 (106)
.+.|=|.|+.++..+++..+
T Consensus 34 ~i~GtSAGAl~aa~~a~g~~ 53 (243)
T cd07204 34 RIAGASAGAIVAAVVLCGVS 53 (243)
T ss_pred EEEEEcHHHHHHHHHHhCCC
Confidence 79999999999999998754
No 282
>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]
Probab=23.30 E-value=1.4e+02 Score=24.80 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhCCCcEEEEEe------ChHHHHHHHHHHcCc
Q psy17377 23 TATIDYVLNVTGKKKVITIGH------SMGTTNVLVAGSLRP 58 (106)
Q Consensus 23 ~~~i~~v~~~~~~~~~~lvGH------SmGg~i~l~~~~~~p 58 (106)
...+..++.. .++++++|| +.|+++++...+..-
T Consensus 327 s~al~d~i~e--~d~VfImGHk~pDmDalGsAig~~~~A~~~ 366 (655)
T COG3887 327 STALSDIIKE--SDNVFIMGHKFPDMDALGSAIGMQKFASMN 366 (655)
T ss_pred HHHHHHHHhh--cCcEEEEccCCCChHHHHHHHHHHHHHHhc
Confidence 3344444443 679999999 789999998877643
No 283
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=22.49 E-value=99 Score=22.75 Aligned_cols=28 Identities=11% Similarity=0.054 Sum_probs=19.5
Q ss_pred HHHHHHHHhCCCcEEEEEeChHHHHHHH
Q psy17377 25 TIDYVLNVTGKKKVITIGHSMGTTNVLV 52 (106)
Q Consensus 25 ~i~~v~~~~~~~~~~lvGHSmGg~i~l~ 52 (106)
..+.+++.+......+|-|||||.++.-
T Consensus 74 ~~~~I~~~l~~~d~v~i~aglGGGTGSG 101 (304)
T cd02201 74 SREEIKEALEGADMVFITAGMGGGTGTG 101 (304)
T ss_pred HHHHHHHHHhCCCEEEEeeccCCCcchh
Confidence 3445666665567789999999877443
No 284
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=22.39 E-value=87 Score=21.11 Aligned_cols=36 Identities=22% Similarity=0.232 Sum_probs=18.8
Q ss_pred ccHHHHHHHHHHHhCCCcEEEEEeChH-----HHHHHHHHHc
Q psy17377 20 YDTTATIDYVLNVTGKKKVITIGHSMG-----TTNVLVAGSL 56 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~~~~~~~lvGHSmG-----g~i~l~~~~~ 56 (106)
.|+..+++.+.+.....+ .++=|++| |++...++..
T Consensus 89 ~~l~~~v~~i~~~~~~g~-kVvVHC~~GigRSgtviaA~lm~ 129 (180)
T COG2453 89 EDLDKIVDFIEEALSKGK-KVVVHCQGGIGRSGTVIAAYLML 129 (180)
T ss_pred HHHHHHHHHHHHHHhcCC-eEEEEcCCCCchHHHHHHHHHHH
Confidence 455566666666554443 44445555 4555444433
No 285
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=22.23 E-value=1.2e+02 Score=23.84 Aligned_cols=41 Identities=10% Similarity=0.019 Sum_probs=22.9
Q ss_pred ccccccccccccHHHHHHHH---HHHhCCCcEEEEEeChHHHHH
Q psy17377 10 ILVKFHEIGIYDTTATIDYV---LNVTGKKKVITIGHSMGTTNV 50 (106)
Q Consensus 10 w~~s~~~~~~~Dl~~~i~~v---~~~~~~~~~~lvGHSmGg~i~ 50 (106)
|+..+...+..-...+.+.+ .+..+.-.-+++=||+||.++
T Consensus 97 wa~Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtG 140 (446)
T cd02189 97 WAYGYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTG 140 (446)
T ss_pred hhccccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcc
Confidence 55555444433333444444 333444466788999998764
No 286
>PRK12896 methionine aminopeptidase; Reviewed
Probab=21.93 E-value=52 Score=23.05 Aligned_cols=31 Identities=19% Similarity=0.233 Sum_probs=20.4
Q ss_pred cccHHHHHHHHHHHhCCCc-EEEEEeChHHHH
Q psy17377 19 IYDTTATIDYVLNVTGKKK-VITIGHSMGTTN 49 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~-~~lvGHSmGg~i 49 (106)
..|+...++.+.+..+... ...+||++|-.+
T Consensus 149 ~~~v~~~~~~~~~~~G~~~~~~~~GHgiG~~~ 180 (255)
T PRK12896 149 LNDIGRAIEDFAKKNGYSVVRDLTGHGVGRSL 180 (255)
T ss_pred HHHHHHHHHHHHHHcCCEeccCcccCCcCccc
Confidence 3455566666666666643 357999998854
No 287
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=21.80 E-value=1.5e+02 Score=28.90 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=21.7
Q ss_pred HHHHhCCCcEEEEEeChHHHHHHHHHH
Q psy17377 29 VLNVTGKKKVITIGHSMGTTNVLVAGS 55 (106)
Q Consensus 29 v~~~~~~~~~~lvGHSmGg~i~l~~~~ 55 (106)
+++..|..+-.++|||+|=..++..+.
T Consensus 667 lL~~~Gi~Pd~v~GHSlGE~aAa~aAG 693 (2582)
T TIGR02813 667 LFTQAGFKADMTAGHSFGELSALCAAG 693 (2582)
T ss_pred HHHHcCCccceeecCCHHHHHHHHHhC
Confidence 455678888899999999988877664
No 288
>cd07206 Pat_TGL3-4-5_SDP1 Triacylglycerol lipase 3, 4, and 5 and Sugar-Dependent 1 lipase. Triacylglycerol lipases are involved in triacylglycerol mobilization and degradation; they are found in lipid particles. TGL4 is 30% homologus to TGL3, whereas TGL5 is 26% homologus to TGL3. Sugar-Dependent 1 (SDP1) lipase has a patatin-like acyl-hydrolase domain that initiates the breakdown of storage oil in germinating Arabidopsis seeds. This family includes subfamilies of proteins: TGL3, TGL4, TGL5, and SDP1.
Probab=21.74 E-value=1.9e+02 Score=21.61 Aligned_cols=24 Identities=17% Similarity=0.169 Sum_probs=19.6
Q ss_pred hCCCcEEEEEeChHHHHHHHHHHc
Q psy17377 33 TGKKKVITIGHSMGTTNVLVAGSL 56 (106)
Q Consensus 33 ~~~~~~~lvGHSmGg~i~l~~~~~ 56 (106)
.+...-.+.|-|.|+.++..+++.
T Consensus 94 ~~l~~~~i~GtSaGAi~aa~~~~~ 117 (298)
T cd07206 94 QDLLPRVISGSSAGAIVAALLGTH 117 (298)
T ss_pred cCCCCCEEEEEcHHHHHHHHHHcC
Confidence 355556799999999999998864
No 289
>PRK05716 methionine aminopeptidase; Validated
Probab=21.46 E-value=62 Score=22.62 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=20.0
Q ss_pred cccHHHHHHHHHHHhCCCcE-EEEEeChHHH
Q psy17377 19 IYDTTATIDYVLNVTGKKKV-ITIGHSMGTT 48 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~-~lvGHSmGg~ 48 (106)
..|+...++.++++.+.... ..+||+.|-.
T Consensus 144 ~~dv~~~~~~~~~~~g~~~~~~~~GHgiG~~ 174 (252)
T PRK05716 144 LGDIGHAIQKYAEAEGFSVVREYCGHGIGRK 174 (252)
T ss_pred HHHHHHHHHHHHHHcCCeeecCccccccCCc
Confidence 45566666666666666542 5689999875
No 290
>cd01714 ETF_beta The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=21.32 E-value=1.4e+02 Score=20.52 Aligned_cols=33 Identities=12% Similarity=0.134 Sum_probs=22.9
Q ss_pred HHHHHHHHHHhCCCcEEEEEeCh----HHHHHHHHHHc
Q psy17377 23 TATIDYVLNVTGKKKVITIGHSM----GTTNVLVAGSL 56 (106)
Q Consensus 23 ~~~i~~v~~~~~~~~~~lvGHSm----Gg~i~l~~~~~ 56 (106)
.+.+..++++.+ ..++++|||- |..++-..+++
T Consensus 97 a~al~~~i~~~~-p~lVL~~~t~~~~~grdlaprlAar 133 (202)
T cd01714 97 AKALAAAIKKIG-VDLILTGKQSIDGDTGQVGPLLAEL 133 (202)
T ss_pred HHHHHHHHHHhC-CCEEEEcCCcccCCcCcHHHHHHHH
Confidence 334444545445 6899999998 77787777765
No 291
>PRK12897 methionine aminopeptidase; Reviewed
Probab=21.08 E-value=87 Score=22.07 Aligned_cols=31 Identities=19% Similarity=0.172 Sum_probs=21.5
Q ss_pred cccHHHHHHHHHHHhCCCc-EEEEEeChHHHH
Q psy17377 19 IYDTTATIDYVLNVTGKKK-VITIGHSMGTTN 49 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~-~~lvGHSmGg~i 49 (106)
..|+...++.+.+..+... .+..||++|=.+
T Consensus 143 ~~dv~~a~~~~~~~~g~~~~~~~~GHgiGl~~ 174 (248)
T PRK12897 143 VGDIGYAIESYVANEGFSVARDFTGHGIGKEI 174 (248)
T ss_pred cchHHHHHHHHHHHcCCccCCCeEECccCCcc
Confidence 4567777777777766642 367999998743
No 292
>TIGR00500 met_pdase_I methionine aminopeptidase, type I. Methionine aminopeptidase is a cobalt-binding enzyme. Bacterial and organellar examples (type I) differ from eukaroytic and archaeal (type II) examples in lacking a region of approximately 60 amino acids between the 4th and 5th cobalt-binding ligands. This model describes type I. The role of this protein in general is to produce the mature form of cytosolic proteins by removing the N-terminal methionine.
Probab=20.51 E-value=55 Score=22.88 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=19.3
Q ss_pred cccHHHHHHHHHHHhCCCcE-EEEEeChHHHH
Q psy17377 19 IYDTTATIDYVLNVTGKKKV-ITIGHSMGTTN 49 (106)
Q Consensus 19 ~~Dl~~~i~~v~~~~~~~~~-~lvGHSmGg~i 49 (106)
..|+...++.+++..+.... ..+||++|=.+
T Consensus 142 ~~~v~~~~~~~~~~~g~~~~~~~~GHgiG~~~ 173 (247)
T TIGR00500 142 IGEIGAAIQKYAEAKGFSVVREYCGHGIGRKF 173 (247)
T ss_pred HHHHHHHHHHHHHHcCCEeccCccCCccCccc
Confidence 34555566666666665442 46899988643
No 293
>PF05705 DUF829: Eukaryotic protein of unknown function (DUF829); InterPro: IPR008547 This signature identifies Transmembrane protein 53, that have no known function but are predicted to be integral membrane proteins.
Probab=20.41 E-value=3e+02 Score=18.94 Aligned_cols=37 Identities=11% Similarity=-0.016 Sum_probs=23.7
Q ss_pred cEEEEEeChHHHHHHHHHHc-----C--cccccccceEEeechh
Q psy17377 37 KVITIGHSMGTTNVLVAGSL-----R--PEYQSKISLSILWAQA 73 (106)
Q Consensus 37 ~~~lvGHSmGg~i~l~~~~~-----~--p~~~~~v~~~v~~~P~ 73 (106)
++.+-..|.||...+..... . .....+++++|.=|.+
T Consensus 68 ~il~H~FSnGG~~~~~~l~~~~~~~~~~~~~~~~i~g~I~DS~P 111 (240)
T PF05705_consen 68 PILFHSFSNGGSFLYSQLLEAYQSRKKFGKLLPRIKGIIFDSCP 111 (240)
T ss_pred CEEEEEEECchHHHHHHHHHHHHhcccccccccccceeEEeCCC
Confidence 79999999988887766541 1 2333447776654433
No 294
>COG2936 Predicted acyl esterases [General function prediction only]
Probab=20.38 E-value=2.7e+02 Score=22.87 Aligned_cols=41 Identities=24% Similarity=0.250 Sum_probs=31.7
Q ss_pred ccHHHHHHHHHHHh-CCCcEEEEEeChHHHHHHHHHHcCccc
Q psy17377 20 YDTTATIDYVLNVT-GKKKVITIGHSMGTTNVLVAGSLRPEY 60 (106)
Q Consensus 20 ~Dl~~~i~~v~~~~-~~~~~~lvGHSmGg~i~l~~~~~~p~~ 60 (106)
.|-...|+.+.+.. .-.++-.+|-|.+|...+..|+..|..
T Consensus 107 ~Dg~D~I~Wia~QpWsNG~Vgm~G~SY~g~tq~~~Aa~~pPa 148 (563)
T COG2936 107 EDGYDTIEWLAKQPWSNGNVGMLGLSYLGFTQLAAAALQPPA 148 (563)
T ss_pred cchhHHHHHHHhCCccCCeeeeecccHHHHHHHHHHhcCCch
Confidence 56667888877643 224899999999999999999987653
No 295
>PTZ00335 tubulin alpha chain; Provisional
Probab=20.20 E-value=2.8e+02 Score=21.77 Aligned_cols=42 Identities=12% Similarity=0.059 Sum_probs=23.6
Q ss_pred ccccccccccccccHHHHHHHHHHHhC---CCcEEEEEeChHHHH
Q psy17377 8 YMILVKFHEIGIYDTTATIDYVLNVTG---KKKVITIGHSMGTTN 49 (106)
Q Consensus 8 ~~w~~s~~~~~~~Dl~~~i~~v~~~~~---~~~~~lvGHSmGg~i 49 (106)
.=|+..+...+..-+..+.+.+++... .-+-+++=||+||.+
T Consensus 101 nnwa~Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~Sl~GGT 145 (448)
T PTZ00335 101 NNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFHAVGGGT 145 (448)
T ss_pred CcccccccchhhhHhHHHHHHHHHhHHhccCccceeEeeccCCCc
Confidence 346656655553334445555554432 224468899999866
No 296
>PF13289 SIR2_2: SIR2-like domain
Probab=20.19 E-value=1.4e+02 Score=18.54 Aligned_cols=22 Identities=18% Similarity=0.392 Sum_probs=15.1
Q ss_pred HHHHHHhCCCcEEEEEeChHHH
Q psy17377 27 DYVLNVTGKKKVITIGHSMGTT 48 (106)
Q Consensus 27 ~~v~~~~~~~~~~lvGHSmGg~ 48 (106)
+.+.+.+....+.++|+|+.=.
T Consensus 78 ~~l~~~l~~~~~lfiGys~~D~ 99 (143)
T PF13289_consen 78 NFLRSLLRSKTLLFIGYSFNDP 99 (143)
T ss_pred HHHHHHHcCCCEEEEEECCCCH
Confidence 3344555566889999998643
Done!