RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17377
(106 letters)
>gnl|CDD|201306 pfam00561, Abhydrolase_1, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 226
Score = 41.4 bits (97), Expect = 2e-05
Identities = 16/94 (17%), Positives = 29/94 (30%), Gaps = 1/94 (1%)
Query: 14 FHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73
F + D ++ +L+ G KV +GHSMG L + P+ + L A
Sbjct: 20 FADYRFDDLAEDLEALLDALGLDKVNLVGHSMGGLIALAYAAKYPDRVKALVLVGTVHPA 79
Query: 74 AFLGHM-HMKYMIDVFYSLFVVSDVAFQSNFQSN 106
+ ++ + F
Sbjct: 80 GLSSPLTPRGNLLGLLLDNFFNRLYDSVEALLGR 113
>gnl|CDD|223669 COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta
hydrolase superfamily) [General function prediction
only].
Length = 282
Score = 35.4 bits (80), Expect = 0.002
Identities = 11/45 (24%), Positives = 19/45 (42%)
Query: 15 HEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59
+ + +L+ G +KV+ +GHSMG L P+
Sbjct: 67 AGYSLSAYADDLAALLDALGLEKVVLVGHSMGGAVALALALRHPD 111
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 34.1 bits (78), Expect = 0.007
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 5/96 (5%)
Query: 14 FHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73
+ E+ +YD I YV ++T K+ +GHS GT L A +P + + L
Sbjct: 139 WQELALYDLAEMIHYVYSIT-NSKIFIVGHSQGTIMSL-AALTQPNVVEMVEAAALLCPI 196
Query: 74 AFLGHMHMKY---MIDVFYSLFVVSDVAFQSNFQSN 106
++L H+ M+ + VV+ Q NF+S+
Sbjct: 197 SYLDHVTAPLVLRMVFMHLDQMVVAMGIHQLNFRSD 232
>gnl|CDD|225783 COG3243, PhaC, Poly(3-hydroxyalkanoate) synthetase [Lipid
metabolism].
Length = 445
Score = 32.0 bits (73), Expect = 0.041
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRP 58
ID V ++TG+K + IG+ +G T + A +L
Sbjct: 171 IDTVKDITGQKDINLIGYCVGGTLLAAALALMA 203
>gnl|CDD|182637 PRK10673, PRK10673, acyl-CoA esterase; Provisional.
Length = 255
Score = 29.7 bits (67), Expect = 0.18
Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 30 LNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMHMKYMIDVFY 89
L+ +K IGHSMG V+ +L P+ K+ ++I A + H + +F
Sbjct: 75 LDALQIEKATFIGHSMGGKAVMALTALAPDRIDKL-VAIDIAPVDYHVRRHDE----IFA 129
Query: 90 SLFVVSDVAFQSNFQS 105
++ VS+ + Q+
Sbjct: 130 AINAVSEAGATTRQQA 145
>gnl|CDD|216102 pfam00756, Esterase, Putative esterase. This family contains
Esterase D. However it is not clear if all members of
the family have the same function. This family is
related to the pfam00135 family.
Length = 245
Score = 29.7 bits (67), Expect = 0.18
Identities = 11/61 (18%), Positives = 17/61 (27%), Gaps = 9/61 (14%)
Query: 25 TIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE-YQSKISLS-------ILWAQAAFL 76
+D + + G SMG L P+ + S S S +W
Sbjct: 99 LLDANFPTAPDGRAL-AGQSMGGLGALYLALKYPDLFGSVSSFSPILNPSNSMWGPEDDP 157
Query: 77 G 77
Sbjct: 158 A 158
>gnl|CDD|221720 pfam12697, Abhydrolase_6, Alpha/beta hydrolase family. This
family contains alpha/beta hydrolase enzymes of diverse
specificity.
Length = 187
Score = 29.3 bits (66), Expect = 0.23
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59
+ D A + +L+ G V+ +GHS+G L A + RPE
Sbjct: 48 LEDDAADLAALLDALGLGPVVLVGHSLGGAVALAAAARRPE 88
>gnl|CDD|217043 pfam02450, LACT, Lecithin:cholesterol acyltransferase.
Lecithin:cholesterol acyltransferase (LACT) is involved
in extracellular metabolism of plasma lipoproteins,
including cholesterol.
Length = 377
Score = 28.6 bits (64), Expect = 0.46
Identities = 17/55 (30%), Positives = 23/55 (41%), Gaps = 8/55 (14%)
Query: 24 ATIDYVLNVTGKKKVITIGHSMGTTNVL-------VAGSLRPEYQSKISLSILWA 71
I+ L ++G+K V+ IGHSMG VL G + ISL
Sbjct: 108 QLIEEALKLSGQK-VVLIGHSMGNLLVLYFLLWVEAEGWKDQHIDAFISLGAPLL 161
>gnl|CDD|225176 COG2267, PldB, Lysophospholipase [Lipid metabolism].
Length = 298
Score = 28.9 bits (65), Expect = 0.48
Identities = 13/51 (25%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWA 71
D A ++ + V +GHSMG L+A Y +I +L +
Sbjct: 92 DLDAFVETIAEPDPGLPVFLLGHSMGG---LIALLYLARYPPRIDGLVLSS 139
>gnl|CDD|198101 smart01033, BING4CT, BING4CT (NUC141) domain. This C terminal
domain is found in the BING4 family of nucleolar WD40
repeat proteins.
Length = 80
Score = 27.6 bits (62), Expect = 0.55
Identities = 9/25 (36%), Positives = 17/25 (68%)
Query: 38 VITIGHSMGTTNVLVAGSLRPEYQS 62
V+ IGH+ G ++++V G+ P + S
Sbjct: 23 VLGIGHAGGFSSIIVPGAGEPNFDS 47
>gnl|CDD|225375 COG2819, COG2819, Predicted hydrolase of the alpha/beta superfamily
[General function prediction only].
Length = 264
Score = 28.1 bits (63), Expect = 0.78
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 33 TGKKKVITIGHSMGTTNVLVAGSLRPEYQSK---ISLSILWAQAAFLGHM 79
T ++ IGHS+G VL A P+ + IS S+ W A L +
Sbjct: 134 TNSERTAIIGHSLGGLFVLFALLTYPDCFGRYGLISPSLWWHNEAILREI 183
>gnl|CDD|218844 pfam05990, DUF900, Alpha/beta hydrolase of unknown function
(DUF900). This family consists of several hypothetical
proteins of unknown function mostly found in Rhizobium
species. Members of this family have an alpha/beta
hydrolase fold.
Length = 230
Score = 27.7 bits (62), Expect = 0.87
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 25 TIDYVLNVTGKKKVITIGHSMGT 47
+ Y+ K++ I HSMGT
Sbjct: 83 LLRYLATTPPVKRIHLIAHSMGT 105
>gnl|CDD|219891 pfam08538, DUF1749, Protein of unknown function (DUF1749). This is
a plant and fungal family of unknown function. This
family contains many hypothetical proteins.
Length = 303
Score = 27.8 bits (62), Expect = 0.91
Identities = 9/32 (28%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
Query: 24 ATIDYVLN----VTGKKKVITIGHSMGTTNVL 51
A ++Y+ G++K++ +GHS G+ +V+
Sbjct: 93 ALVEYLRTTKGGTFGRRKIVLMGHSTGSQDVM 124
>gnl|CDD|224001 COG1075, LipA, Predicted acetyltransferases and hydrolases with the
alpha/beta hydrolase fold [General function prediction
only].
Length = 336
Score = 27.9 bits (62), Expect = 1.0
Identities = 15/23 (65%), Positives = 16/23 (69%)
Query: 24 ATIDYVLNVTGKKKVITIGHSMG 46
A +D VL TG KKV IGHSMG
Sbjct: 115 AYVDEVLAKTGAKKVNLIGHSMG 137
>gnl|CDD|149288 pfam08149, BING4CT, BING4CT (NUC141) domain. This C terminal
domain is found in the BING4 family of nucleolar WD40
repeat proteins.
Length = 80
Score = 26.8 bits (60), Expect = 1.1
Identities = 11/25 (44%), Positives = 17/25 (68%)
Query: 38 VITIGHSMGTTNVLVAGSLRPEYQS 62
V+ IGHS G ++++V GS P + S
Sbjct: 23 VLGIGHSGGFSSIIVPGSGEPNFDS 47
>gnl|CDD|227121 COG4782, COG4782, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 377
Score = 27.0 bits (60), Expect = 1.8
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 25 TIDYVLNVTGKKKVITIGHSMGT 47
+ Y+ K++ + HSMGT
Sbjct: 180 LLRYLATDKPVKRIYLLAHSMGT 202
>gnl|CDD|203773 pfam07819, PGAP1, PGAP1-like protein. The sequences found in
this family are similar to PGAP1. This is an
endoplasmic reticulum membrane protein with a catalytic
serine containing motif that is conserved in a number
of lipases. PGAP1 functions as a GPI
inositol-deacylase; this deacylation is important for
the efficient transport of GPI-anchored proteins from
the endoplasmic reticulum to the Golgi body.
Length = 225
Score = 26.9 bits (60), Expect = 1.8
Identities = 10/19 (52%), Positives = 10/19 (52%)
Query: 28 YVLNVTGKKKVITIGHSMG 46
Y N VI IGHSMG
Sbjct: 77 YNSNRPPPTSVILIGHSMG 95
>gnl|CDD|238449 cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are
zinc-containing enzymes that catalyze the reversible
hydration of carbon dioxide in a two-step mechanism in
which the nucleophilic attack of a zinc-bound hydroxide
ion on carbon dioxide is followed by the regeneration
of an active site by ionization of the zinc-bound water
molecule and removal of a proton from the active site.
CAs are ubiquitous enzymes involved in fundamental
processes like photosynthesis, respiration, pH
homeostasis and ion transport. There are three
evolutionarily distinct families of CAs (the alpha-,
beta-, and gamma-CAs) which show no significant
sequence identity or structural similarity. Within the
beta-CA family there are four evolutionarily distinct
clades (A through D). The beta-CAs are multimeric
enzymes (forming dimers,tetramers,hexamers and
octamers) which are present in higher plants, algae,
fungi, archaea and prokaryotes.
Length = 190
Score = 26.3 bits (59), Expect = 2.9
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 1 MGNL---YETYMILVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHS 44
+GNL YE FH T+A I+Y + V + ++ GHS
Sbjct: 57 VGNLVPPYEPDG---GFHG-----TSAAIEYAVAVLKVEHIVVCGHS 95
>gnl|CDD|178549 PLN02965, PLN02965, Probable pheophorbidase.
Length = 255
Score = 26.4 bits (58), Expect = 3.1
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 37 KVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73
KVI +GHS+G +V A KIS++I A A
Sbjct: 73 KVILVGHSIGGGSVTEALCKFT---DKISMAIYVAAA 106
>gnl|CDD|178346 PLN02745, PLN02745, Putative pectinesterase/pectinesterase
inhibitor.
Length = 596
Score = 26.4 bits (58), Expect = 3.8
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 8/40 (20%)
Query: 8 YMILVKFHEIGIYDTTATIDY-VLNVT----GKKKVITIG 42
Y+I VK GIYD T T+D ++NVT G +K I G
Sbjct: 315 YVIYVKQ---GIYDETVTVDKKMVNVTMYGDGSQKTIVTG 351
>gnl|CDD|226455 COG3946, VirJ, Type IV secretory pathway, VirJ component
[Intracellular trafficking and secretion].
Length = 456
Score = 26.3 bits (58), Expect = 3.9
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 21 DTTATIDYVLNVTGKKKVITIGHSMG 46
D + I + G K+V+ IG+S G
Sbjct: 311 DLSRLIRFYARRWGAKRVLLIGYSFG 336
>gnl|CDD|240406 PTZ00411, PTZ00411, transaldolase-like protein; Provisional.
Length = 333
Score = 26.2 bits (58), Expect = 4.1
Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 47 TTN--VLVAGSLRPEYQSKISLSILWAQAAF 75
TTN +++A + PEY I +I +A+A
Sbjct: 33 TTNPSLVLAAAQMPEYAHLIDDAIKYAKANV 63
>gnl|CDD|178132 PLN02517, PLN02517, phosphatidylcholine-sterol O-acyltransferase.
Length = 642
Score = 25.9 bits (57), Expect = 4.7
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 14 FHEIGIYDTT-----ATIDYVLNVTGKKKVITIGHSMG 46
F + D T + I+ ++ G KKV+ + HSMG
Sbjct: 186 FQNTEVRDQTLSRLKSNIELMVATNGGKKVVVVPHSMG 223
>gnl|CDD|220638 pfam10230, DUF2305, Uncharacterized conserved protein (DUF2305).
This family of proteins is conserved from plants to
humans. The function is unknown.
Length = 260
Score = 25.3 bits (56), Expect = 6.3
Identities = 8/22 (36%), Positives = 11/22 (50%)
Query: 26 IDYVLNVTGKKKVITIGHSMGT 47
+ L K+I IGHS+G
Sbjct: 69 LRAFLPKKTDVKLILIGHSIGA 90
>gnl|CDD|115027 pfam06342, DUF1057, Alpha/beta hydrolase of unknown function
(DUF1057). This family consists of several
Caenorhabditis elegans specific proteins of unknown
function. Members of this family have an alpha/beta
hydrolase fold.
Length = 297
Score = 25.5 bits (56), Expect = 6.7
Identities = 11/24 (45%), Positives = 14/24 (58%)
Query: 35 KKKVITIGHSMGTTNVLVAGSLRP 58
K K+I +GHS G N L + RP
Sbjct: 103 KGKLIIMGHSRGCENALQTATTRP 126
>gnl|CDD|178583 PLN03006, PLN03006, carbonate dehydratase.
Length = 301
Score = 25.5 bits (55), Expect = 6.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 11 LVKFHEIGIYDTTATIDYVLNVTGKKKVITIGHS 44
LV +E G +T A +++ +N + ++ IGHS
Sbjct: 147 LVPPYESGPTETKAALEFSVNTLNVENILVIGHS 180
>gnl|CDD|218676 pfam05649, Peptidase_M13_N, Peptidase family M13. M13 peptidases
are well-studied proteases found in a wide range of
organisms including mammals and bacteria. In mammals
they participate in processes such as cardiovascular
development, blood-pressure regulation, nervous control
of respiration, and regulation of the function of
neuropeptides in the central nervous system. In bacteria
they may be used for digestion of milk.
Length = 380
Score = 25.4 bits (56), Expect = 6.9
Identities = 4/32 (12%), Positives = 9/32 (28%)
Query: 65 SLSILWAQAAFLGHMHMKYMIDVFYSLFVVSD 96
++ + A L + + V D
Sbjct: 89 AIKSKFDLADALAKLERGGSNGPLFGFGVSPD 120
>gnl|CDD|234769 PRK00451, PRK00451, glycine dehydrogenase subunit 1; Validated.
Length = 447
Score = 25.5 bits (57), Expect = 6.9
Identities = 10/35 (28%), Positives = 18/35 (51%), Gaps = 12/35 (34%)
Query: 30 LNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKI 64
+ +T +KKV LV+G++ PEY+ +
Sbjct: 149 VRITKRKKV------------LVSGAVHPEYREVL 171
>gnl|CDD|182936 PRK11060, PRK11060, rod shape-determining protein MreD;
Provisional.
Length = 162
Score = 25.0 bits (55), Expect = 7.0
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 69 LWAQAAFLGHMHMKYMIDVFYSLFVVSDVAF 99
LW QA + + + I VF++ F+V +V+F
Sbjct: 100 LWQQALVVMLLSLLMDIIVFWAEFLVINVSF 130
>gnl|CDD|217205 pfam02730, AFOR_N, Aldehyde ferredoxin oxidoreductase, N-terminal
domain. Aldehyde ferredoxin oxidoreductase (AOR)
catalyzes the reversible oxidation of aldehydes to their
corresponding carboxylic acids with their accompanying
reduction of the redox protein ferredoxin. This domain
interacts with the tungsten cofactor.
Length = 201
Score = 25.1 bits (56), Expect = 7.1
Identities = 6/22 (27%), Positives = 7/22 (31%)
Query: 21 DTTATIDYVLNVTGKKKVITIG 42
T D + G V IG
Sbjct: 137 GVYETTDALKEELGDASVACIG 158
>gnl|CDD|215390 PLN02733, PLN02733, phosphatidylcholine-sterol O-acyltransferase.
Length = 440
Score = 25.4 bits (56), Expect = 7.2
Identities = 13/32 (40%), Positives = 15/32 (46%)
Query: 32 VTGKKKVITIGHSMGTTNVLVAGSLRPEYQSK 63
+G KKV I HSMG V SL + K
Sbjct: 158 ASGGKKVNIISHSMGGLLVKCFMSLHSDVFEK 189
>gnl|CDD|215128 PLN02211, PLN02211, methyl indole-3-acetate methyltransferase.
Length = 273
Score = 25.2 bits (55), Expect = 8.1
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78
ID++ ++ +KVI +GHS G +V A P+ KI L++ A A L
Sbjct: 77 IDFLSSLPENEKVILVGHSAGGLSVTQAIHRFPK---KICLAVYVA-ATMLKL 125
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.136 0.393
Gapped
Lambda K H
0.267 0.0773 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,221,216
Number of extensions: 430293
Number of successful extensions: 486
Number of sequences better than 10.0: 1
Number of HSP's gapped: 485
Number of HSP's successfully gapped: 42
Length of query: 106
Length of database: 10,937,602
Length adjustment: 71
Effective length of query: 35
Effective length of database: 7,788,468
Effective search space: 272596380
Effective search space used: 272596380
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.1 bits)