RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17377
(106 letters)
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 75.0 bits (184), Expect = 1e-17
Identities = 28/97 (28%), Positives = 41/97 (42%), Gaps = 6/97 (6%)
Query: 14 FHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73
F E+ YD ATID++L TG+ K+ +GHS GTT +A S P+ +I A
Sbjct: 123 FDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPV 182
Query: 74 AFLGHMH------MKYMIDVFYSLFVVSDVAFQSNFQ 104
A + + M +F +F F
Sbjct: 183 ATVKYTETLINKLMLVPSFLFKLIFGNKIFYPHHFFD 219
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 44.9 bits (105), Expect = 7e-07
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 4/58 (6%)
Query: 24 ATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSK----ISLSILWAQAAFLG 77
ID L +G KV +GHSMGT ++ + PE +K I L +W A G
Sbjct: 116 RVIDEALAESGADKVDLVGHSMGTFFLVRYVNSSPERAAKVAHLILLDGVWGVDAPEG 173
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.4 bits (96), Expect = 1e-05
Identities = 19/89 (21%), Positives = 29/89 (32%), Gaps = 22/89 (24%)
Query: 17 IG--IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQS--------KIS- 65
I I D AT D +V K I S+ NVL R + I
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSL---NVLEPAEYRKMFDRLSVFPPSAHIPT 389
Query: 66 --LSILWAQAA------FLGHMHMKYMID 86
LS++W + +H +++
Sbjct: 390 ILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418
>3pfb_A Cinnamoyl esterase; alpha/beta hydrolase fold, hydrolase,
cinnamoyl/Fe esterase, hydroxycinammates, extracellular;
HET: ZYC; 1.58A {Lactobacillus johnsonii} PDB: 3pf9_A*
3pfc_A* 3s2z_A* 3pf8_A 3qm1_A*
Length = 270
Score = 39.8 bits (93), Expect = 3e-05
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 7/74 (9%)
Query: 13 KFHEIGIY----DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSI 68
KF + + D A ++YV + + +GH+ G + L P+ I +
Sbjct: 92 KFENMTVLNEIEDANAILNYVKTDPHVRNIYLVGHAQGGVVASMLAGLYPD---LIKKVV 148
Query: 69 LWAQAAFLGHMHMK 82
L A AA L ++
Sbjct: 149 LLAPAATLKGDALE 162
>2rau_A Putative esterase; NP_343859.1, putative lipase, structural
genomics, joint CEN structural genomics, JCSG; HET: PG4
UNL; 1.85A {Sulfolobus solfataricus P2}
Length = 354
Score = 38.0 bits (87), Expect = 2e-04
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78
I D + ++ +G++++ G S G L SL ++ I IL
Sbjct: 127 ISDIKEVVSFIKRDSGQERIYLAGESFGGIAALNYSSLYW--KNDIKGLILLDGGPTKHG 184
Query: 79 MHMKYMIDVFYSLF 92
+ K+ S+
Sbjct: 185 IRPKFYTPEVNSIE 198
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 37.6 bits (86), Expect = 3e-04
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 24 ATIDYVLNVTGKKKVITIGHSMGTT 48
ID V TGK +V + HSMG +
Sbjct: 116 TFIDKVKAYTGKSQVDIVAHSMGVS 140
>2wtm_A EST1E; hydrolase; 1.60A {Clostridium proteoclasticum} PDB: 2wtn_A*
Length = 251
Score = 37.3 bits (87), Expect = 3e-04
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Query: 13 KFHEIGIY----DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSI 68
KF + ++ + A +DY + + GHS G +V++A ++ + I I
Sbjct: 73 KFEDHTLFKWLTNILAVVDYAKKLDFVTDIYMAGHSQGGLSVMLAAAMERD---IIKALI 129
Query: 69 LWAQAAFLGHM 79
+ AA + +
Sbjct: 130 PLSPAAMIPEI 140
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 37.1 bits (85), Expect = 4e-04
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSI 68
I + +G K+ + S G + P +SK+ +
Sbjct: 87 ITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLM 129
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 37.1 bits (85), Expect = 4e-04
Identities = 8/43 (18%), Positives = 16/43 (37%)
Query: 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSI 68
I + +G K+ + S G + P +SK+ +
Sbjct: 121 ITTLYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVDRLM 163
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 34.3 bits (78), Expect = 0.003
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 1/53 (1%)
Query: 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWA 71
D I +L +V S GT V ++S I+ IL
Sbjct: 91 AEDVDDLIGILLRDHCMNEVALFATSTGTQLVFELLE-NSAHKSSITRVILHG 142
>1isp_A Lipase; alpha/beta hydrolase fold, hydrolase; 1.30A {Bacillus
subtilis} SCOP: c.69.1.18 PDB: 1i6w_A 1r4z_A* 1r50_A*
2qxu_A 2qxt_A 1t4m_A 1t2n_A 3d2a_A 3qzu_A 3d2b_A 3d2c_A
3qmm_A
Length = 181
Score = 33.6 bits (77), Expect = 0.004
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 24 ATIDYVLNVTGKKKVITIGHSMG 46
+ VL+ TG KKV + HSMG
Sbjct: 57 RFVQKVLDETGAKKVDIVAHSMG 79
>2wfl_A Polyneuridine-aldehyde esterase; alkaloid metabolism, monoterpenoid
indole alkaloids, PNAE, hydrolase, serine esterase; HET:
CME; 2.10A {Rauvolfia serpentina} PDB: 2wfm_A 3gzj_A*
Length = 264
Score = 31.4 bits (71), Expect = 0.036
Identities = 13/69 (18%), Positives = 33/69 (47%), Gaps = 3/69 (4%)
Query: 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMH 80
+ ++ + ++ +KV+ +GHS G ++ +A PE KIS+++ + +
Sbjct: 64 YSEPLMEVMASIPPDEKVVLLGHSFGGMSLGLAMETYPE---KISVAVFMSAMMPDPNHS 120
Query: 81 MKYMIDVFY 89
+ Y + +
Sbjct: 121 LTYPFEKYN 129
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 31.3 bits (70), Expect = 0.038
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 33 TGKKKVITIGHSMGTTNVLVAGSLRPE 59
+ + IGHSMG L L+P
Sbjct: 134 SHPALNVVIGHSMGGFQALACDVLQPN 160
>1xkl_A SABP2, salicylic acid-binding protein 2; alpha-beta protein,
structural genomics, protein structure initiative, PSI;
HET: STH; 2.00A {Nicotiana tabacum} SCOP: c.69.1.20 PDB:
1y7i_A* 1y7h_A*
Length = 273
Score = 29.9 bits (67), Expect = 0.11
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKI 64
T ++ + +++ +KVI +GHS+G N+ +A P+
Sbjct: 58 YTLPLMELMESLSADEKVILVGHSLGGMNLGLAMEKYPQKIYAA 101
>3g8y_A SUSD/RAGB-associated esterase-like protein; structural genom joint
center for structural genomics, JCSG; HET: MSE; 1.90A
{Bacteroides vulgatus atcc 8482}
Length = 391
Score = 29.9 bits (66), Expect = 0.11
Identities = 9/42 (21%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
Query: 19 IYDTTATIDYVLNVTG--KKKVITIGHSMGTTNVLVAGSLRP 58
Y ++++ + K +++ G S+GT ++V G L
Sbjct: 206 SYLDMQVLNWMKAQSYIRKDRIVISGFSLGTEPMMVLGVLDK 247
>3pic_A CIP2; alpha/beta hydrolase fold, glucuronoyl esterase, carbohydrat
esterase family 15 (CE-15), N-linked glycosylation,
secrete hydrolase; HET: NAG; 1.90A {Hypocrea jecorina}
Length = 375
Score = 29.5 bits (65), Expect = 0.16
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 4/52 (7%)
Query: 20 YDTTATIDYVLNVTGK----KKVITIGHSMGTTNVLVAGSLRPEYQSKISLS 67
+ + ID + V G K+ G S +VAG+ +
Sbjct: 165 WGVSRVIDALELVPGARIDTTKIGVTGCSRNGKGAMVAGAFEKRIVLTLPQE 216
>3hju_A Monoglyceride lipase; alpha/beta hydrolase, hydrolase, serine
esterase; 2.20A {Homo sapiens}
Length = 342
Score = 29.3 bits (66), Expect = 0.18
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 14 FHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73
FH + D +D + V +GHSMG +A E + +L +
Sbjct: 111 FHVF-VRDVLQHVDSMQKDYPGLPVFLLGHSMGG---AIAILTAAERPGHFAGMVLIS-P 165
Query: 74 AFLGHMHMKYMIDVF 88
L + V
Sbjct: 166 LVLANPESATTFKVL 180
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 29.0 bits (65), Expect = 0.22
Identities = 6/31 (19%), Positives = 12/31 (38%)
Query: 29 VLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59
VL +G S+G + ++ P+
Sbjct: 139 VLRELAPGAEFVVGMSLGGLTAIRLAAMAPD 169
>3rm3_A MGLP, thermostable monoacylglycerol lipase; alpha/beta hydrolase
fold, hydrolase; 1.20A {Bacillus SP}
Length = 270
Score = 29.0 bits (65), Expect = 0.22
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 36 KKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMHMKYMI 85
+ + G SMG T L P+ + ++ A M +
Sbjct: 109 QTIFVTGLSMGGTLTLYLAEHHPDICGIVPINAAVDIPAIAAGMTGGGEL 158
>3c5v_A PME-1, protein phosphatase methylesterase 1; demethylase, PP2A,
alternative splicing, hydrolase, phosphoprotein, serine
esterase; 2.00A {Homo sapiens} PDB: 3c5w_P
Length = 316
Score = 29.0 bits (65), Expect = 0.24
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 21 DTTATIDYVLNVTGKKKVITIGHSMG-TTNVLVAGSLRPE 59
D ++ + ++ IGHSMG V A S
Sbjct: 96 DVGNVVEA-MYGDLPPPIMLIGHSMGGAIAVHTASSNLVP 134
>3pe6_A Monoglyceride lipase; alpha-beta hydrolase fold,
2-arachidonyl-glycerol, M associated, hydrolase,
hydrolase-hydrolase inhibitor comple; HET: ZYH; 1.35A
{Homo sapiens} PDB: 3jw8_A 3jwe_A*
Length = 303
Score = 28.8 bits (65), Expect = 0.29
Identities = 15/75 (20%), Positives = 24/75 (32%), Gaps = 5/75 (6%)
Query: 14 FHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73
FH + D +D + V +GHSMG +A E + +L +
Sbjct: 93 FHVF-VRDVLQHVDSMQKDYPGLPVFLLGHSMGG---AIAILTAAERPGHFAGMVLIS-P 147
Query: 74 AFLGHMHMKYMIDVF 88
L + V
Sbjct: 148 LVLANPESATTFKVL 162
>3sty_A Methylketone synthase 1; alpha/beta hydrolase, decarboxylase,
hydrolase; HET: DKA; 1.70A {Lycopersicon hirsutum F}
PDB: 3stu_A* 3stt_A* 3stv_A* 3stw_A* 3stx_A*
Length = 267
Score = 28.4 bits (63), Expect = 0.35
Identities = 8/39 (20%), Positives = 21/39 (53%)
Query: 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59
+ ++++ ++ +K+I +GH++G + A PE
Sbjct: 66 YLSPLMEFMASLPANEKIILVGHALGGLAISKAMETFPE 104
>1tqh_A Carboxylesterase precursor; tetrahedral intermediate, alpha/beta
hydrolase; 1.63A {Geobacillus stearothermophilus} SCOP:
c.69.1.29 PDB: 1r1d_A* 4diu_A
Length = 247
Score = 28.6 bits (64), Expect = 0.36
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 5/50 (10%)
Query: 34 GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMHMKY 83
G +K+ G S+G L G P I + ++ Y
Sbjct: 84 GYEKIAVAGLSLGGVFSLKLGYTVP-----IEGIVTMCAPMYIKSEETMY 128
>3qit_A CURM TE, polyketide synthase; thioesterase, alpha/beta hydrolase,
decarboxylase, sulfate elimination, terminal alkene
production; 1.68A {Lyngbya majuscula 19L}
Length = 286
Score = 28.5 bits (64), Expect = 0.36
Identities = 9/41 (21%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59
+ I + + ++ +GHSMG S+RP+
Sbjct: 82 LAQIDRVIQEL----PDQPLLLVGHSMGAMLATAIASVRPK 118
>1ys1_X Lipase; CIS peptide Leu 234, Ca2+ ION, inhibitor hexylphosphonic
acid (R) 2-methyl-3-phenylpropyl ester, hydrolase; HET:
2HR; 1.10A {Burkholderia cepacia} PDB: 1ys2_X* 4lip_D
1hqd_A 2lip_A 1oil_A* 3lip_A 2nw6_A 5lip_A* 1cvl_A
2es4_A 1tah_B 1qge_D 1qge_E
Length = 320
Score = 28.5 bits (63), Expect = 0.41
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEY 60
+ VL TG KV +GHS G ++ P+
Sbjct: 69 VKTVLAATGATKVNLVGHSQGGLTSRYVAAVAPDL 103
>3k2i_A Acyl-coenzyme A thioesterase 4; alpha/beta hydrolase fold
seven-stranded beta-sandwich, structural genomics,
structural genomics consortium, SGC; 2.40A {Homo
sapiens}
Length = 422
Score = 28.2 bits (62), Expect = 0.46
Identities = 11/73 (15%), Positives = 23/73 (31%), Gaps = 6/73 (8%)
Query: 13 KFHEIGIYDTTATIDYVLN--VTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILW 70
I + + Y+L + +G S+G L S +S ++
Sbjct: 200 NMDNISLEYFEEAVCYMLQHPQVKGPGIGLLGISLGADICLSMASFLKN----VSATVSI 255
Query: 71 AQAAFLGHMHMKY 83
+ G+ + Y
Sbjct: 256 NGSGISGNTAINY 268
>4ao6_A Esterase; hydrolase, thermo label; 1.60A {Unidentified} PDB: 4ao7_A
4ao8_A
Length = 259
Score = 28.3 bits (62), Expect = 0.47
Identities = 11/41 (26%), Positives = 16/41 (39%)
Query: 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59
I D A +D++ G + G SMGT L +
Sbjct: 131 IADWAAALDFIEAEEGPRPTGWWGLSMGTMMGLPVTASDKR 171
>3ksr_A Putative serine hydrolase; catalytic triad, structural genomics,
JOIN for structural genomics, JCSG; 2.69A {Xanthomonas
campestris PV}
Length = 290
Score = 27.9 bits (62), Expect = 0.51
Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 21 DTTATIDYVLNVTG--KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFL 76
D A D + ++ + +G S G + RP + L + A +
Sbjct: 84 DIKAAYDQLASLPYVDAHSIAVVGLSYGGYLSALLTRERP-----VEWLALRSPALYK 136
>1tht_A Thioesterase; 2.10A {Vibrio harveyi} SCOP: c.69.1.13
Length = 305
Score = 28.1 bits (62), Expect = 0.52
Identities = 9/65 (13%), Positives = 15/65 (23%), Gaps = 2/65 (3%)
Query: 16 EIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAF 75
G + L G + + I S+ S E I+ +
Sbjct: 87 TTGKNSLCTVYHW-LQTKGTQNIGLIAASLSARVAYEVIS-DLELSFLITAVGVVNLRDT 144
Query: 76 LGHMH 80
L
Sbjct: 145 LEKAL 149
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 27.8 bits (62), Expect = 0.68
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKI 64
+ L+ K IGHSMG V+ +L P+ K+
Sbjct: 71 LVDTLDALQIDKATFIGHSMGGKAVMALTALAPDRIDKL 109
>3bwx_A Alpha/beta hydrolase; YP_496220.1, joint center for structural
genomics, protein structure initiative, PSI-2; HET: MSE;
1.50A {Novosphingobium aromaticivorans}
Length = 285
Score = 27.7 bits (62), Expect = 0.69
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 29 VLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59
+L G ++ + IG S+G ++ + P
Sbjct: 90 LLAQEGIERFVAIGTSLGGLLTMLLAAANPA 120
>3dkr_A Esterase D; alpha beta hydrolase, mechanism, catalytic triad,
rotation; 1.60A {Lactobacillus rhamnosus} PDB: 3dlt_A
3dyi_A 3dyv_A 3e1g_A
Length = 251
Score = 27.5 bits (61), Expect = 0.74
Identities = 8/32 (25%), Positives = 11/32 (34%)
Query: 36 KKVITIGHSMGTTNVLVAGSLRPEYQSKISLS 67
KV G S+G + A P + S
Sbjct: 93 AKVFVFGLSLGGIFAMKALETLPGITAGGVFS 124
>2fx5_A Lipase; alpha-beta hydrolase; HET: TLA; 1.80A {Pseudomonas
mendocina}
Length = 258
Score = 26.9 bits (59), Expect = 1.1
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 37 KVITIGHSMGTTNVLVAGS 55
+V T GHS G ++AG
Sbjct: 119 RVGTSGHSQGGGGSIMAGQ 137
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate
inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa}
SCOP: c.69.1.18
Length = 285
Score = 26.6 bits (58), Expect = 1.5
Identities = 10/37 (27%), Positives = 21/37 (56%)
Query: 24 ATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEY 60
++ ++ ++G+ KV IGHS G + ++RP+
Sbjct: 62 QQVEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDL 98
>3dqz_A Alpha-hydroxynitrIle lyase-like protein; A/B-hydrloase fold,
cyanogenesis; 2.50A {Arabidopsis thaliana}
Length = 258
Score = 26.5 bits (58), Expect = 1.6
Identities = 12/69 (17%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Query: 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMH 80
+ I+ + ++ ++VI +G S G N+ +A + P KI + +
Sbjct: 58 YSKPLIETLKSLPENEEVILVGFSFGGINIALAADIFPA---KIKVLVFLNAFLPDTTHV 114
Query: 81 MKYMIDVFY 89
+++D +
Sbjct: 115 PSHVLDKYM 123
>3e0x_A Lipase-esterase related protein; APC60309, clostridium
acetobutylicum ATCC 824, structural genomics, PSI-2;
HET: MSE; 1.45A {Clostridium acetobutylicum}
Length = 245
Score = 26.1 bits (58), Expect = 2.0
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 21 DTTATIDYVLNVTGKKKVITIGHSMG 46
+ I +K + IG+SMG
Sbjct: 69 NVANFITNSEVTKHQKNITLIGYSMG 94
>3nuz_A Putative acetyl xylan esterase; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-biology; 2.30A {Bacteroides fragilis}
Length = 398
Score = 26.3 bits (57), Expect = 2.1
Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 19 IYDTTATIDYVLNVTG--KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFL 76
Y ++++ K +++ G S+GT ++V G+L + + L
Sbjct: 211 SYLDMQVLNWMKTQKHIRKDRIVVSGFSLGTEPMMVLGTLDTSIYAFVYNDFLCQTQERA 270
Query: 77 GHM 79
M
Sbjct: 271 EVM 273
>1dqz_A 85C, protein (antigen 85-C); fibronectin, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium; 1.50A {Mycobacterium tuberculosis} SCOP:
c.69.1.3 PDB: 3hrh_A 1dqy_A 1va5_A* 1f0n_A* 1f0p_A*
Length = 280
Score = 26.4 bits (58), Expect = 2.3
Identities = 9/43 (20%), Positives = 16/43 (37%), Gaps = 2/43 (4%)
Query: 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE-YQSKISLS 67
+ V+ G SM + L+ + P+ + SLS
Sbjct: 105 LQANKGVSPTGNAAV-GLSMSGGSALILAAYYPQQFPYAASLS 146
>3l80_A Putative uncharacterized protein SMU.1393C; alpha/beta hydrolase
fold, carboxylesterase, Ser- hydrolase; 2.00A
{Streptococcus mutans}
Length = 292
Score = 25.7 bits (56), Expect = 3.3
Identities = 6/41 (14%), Positives = 13/41 (31%)
Query: 19 IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59
+ D I + + + HS+G L + +
Sbjct: 93 LRDWVNAILMIFEHFKFQSYLLCVHSIGGFAALQIMNQSSK 133
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 25.8 bits (56), Expect = 3.7
Identities = 15/91 (16%), Positives = 25/91 (27%), Gaps = 28/91 (30%)
Query: 4 LYETYMILVKFHEIGIYDTTATIDYVLN-VTGKKKVITIGHSMG----TTN-----VLVA 53
+ E Y ++ F I D + + + T G T L+
Sbjct: 1684 IRENYSAMI-FETI--VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM- 1739
Query: 54 GSLRPEYQSKISLSILWAQ------AAFLGH 78
K + L ++ A F GH
Sbjct: 1740 --------EKAAFEDLKSKGLIPADATFAGH 1762
Score = 25.4 bits (55), Expect = 4.9
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 18/35 (51%)
Query: 42 GHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFL 76
GHS+G EY + L + A +
Sbjct: 1761 GHSLG------------EY------AALASLADVM 1777
>3c6x_A Hydroxynitrilase; atomic resolution, hydroxynitril lyase,
catalysis, protonation state, AB initio calculations,
substrate bindin; 1.05A {Hevea brasiliensis} SCOP:
c.69.1.20 PDB: 1sc9_A 1yas_A* 2g4l_A* 2yas_A 1qj4_A
3c6y_A 3c6z_A 3c70_A 3yas_A 4yas_A 5yas_A* 6yas_A
7yas_A* 1yb6_A* 1yb7_A 1sck_A 1sci_A 1scq_A 1dwo_A
1dwp_A ...
Length = 257
Score = 25.4 bits (55), Expect = 3.8
Identities = 9/39 (23%), Positives = 18/39 (46%)
Query: 21 DTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE 59
+ + ++ + +KVI +G S G N+ +A E
Sbjct: 57 YSEPLLTFLEALPPGEKVILVGESCGGLNIAIAADKYCE 95
>3kxp_A Alpha-(N-acetylaminomethylene)succinic acid hydrolase; alpha/beta
hydrolase, PLP degradation, E-2-
(acetamidomethylene)succinate; 2.26A {Mesorhizobium
loti}
Length = 314
Score = 25.4 bits (56), Expect = 3.8
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 34 GKKKVITIGHSMGTTNVLVAGSLRPE 59
+ I +GHS+G N + A + P+
Sbjct: 132 ARGHAILVGHSLGARNSVTAAAKYPD 157
>2jbw_A Dhpon-hydrolase, 2,6-dihydroxy-pseudo-oxynicotine hydrolase;
alpha/beta hydrolase, META-cleavage pathway; 2.1A
{Arthrobacter nicotinovorans} SCOP: c.69.1.41
Length = 386
Score = 25.3 bits (55), Expect = 4.2
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 2/63 (3%)
Query: 21 DTTATIDYVLNVTG--KKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGH 78
T+A +D + + + +G S+G L + + P + IS +
Sbjct: 206 YTSAVVDLLTKLEAIRNDAIGVLGRSLGGNYALKSAACEPRLAACISWGGFSDLDYWDLE 265
Query: 79 MHM 81
+
Sbjct: 266 TPL 268
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 25.1 bits (54), Expect = 5.8
Identities = 5/28 (17%), Positives = 9/28 (32%)
Query: 19 IYDTTATIDYVLNVTGKKKVITIGHSMG 46
+ I +L +I +G G
Sbjct: 94 LDQLADMIPCILQYLNFSTIIGVGVGAG 121
>1r88_A MPT51/MPB51 antigen; ALFA/beta hydrolase fold, FBPC1, immune
system; 1.71A {Mycobacterium tuberculosis} SCOP:
c.69.1.3
Length = 280
Score = 24.9 bits (54), Expect = 6.2
Identities = 5/45 (11%), Positives = 13/45 (28%), Gaps = 2/45 (4%)
Query: 24 ATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE-YQSKISLS 67
+ + G + G + + P+ + S+S
Sbjct: 101 DWLAANRGLAPGGHAAV-GAAQGGYGAMALAAFHPDRFGFAGSMS 144
>3bdi_A Uncharacterized protein TA0194; NP_393672.1, predicted CIB-like
hydrolase, structural genomi center for structural
genomics; HET: MSE; 1.45A {Thermoplasma acidophilum dsm
1728}
Length = 207
Score = 24.8 bits (54), Expect = 6.3
Identities = 11/60 (18%), Positives = 19/60 (31%)
Query: 29 VLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQAAFLGHMHMKYMIDVF 88
L G + + +G SMG V++ P+ I + G M +
Sbjct: 93 YLKANGVARSVIMGASMGGGMVIMTTLQYPDIVDGIIAVAPAWVESLKGDMKKIRQKTLL 152
>3fsg_A Alpha/beta superfamily hydrolase; PF00561, MCSG, PSI, PSI-2,
structural genomics, protein structure initiative,
midwest for structural genomics; 2.00A {Oenococcus
oeni}
Length = 272
Score = 24.7 bits (54), Expect = 6.5
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 24 ATIDYVLNVTGKKKVITIGHSMG 46
I+ + + G ++ I GHS G
Sbjct: 77 TLIEAIEEIIGARRFILYGHSYG 99
>1r3d_A Conserved hypothetical protein VC1974; structural genomics,
hydrolase, NYSGXRC, NEW YORK SGX research center for
structural genomics, PSI; 1.90A {Vibrio cholerae} SCOP:
c.69.1.35
Length = 264
Score = 24.6 bits (54), Expect = 7.4
Identities = 6/36 (16%), Positives = 17/36 (47%)
Query: 34 GKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSIL 69
+ VI +G+S+G ++ + + + +I+
Sbjct: 82 SEVPVILVGYSLGGRLIMHGLAQGAFSRLNLRGAII 117
>1sfr_A Antigen 85-A; alpha/beta hydrolase, structural genomics, PSI,
protein structure initiative, TB structural genomics
consortium, TBSGC; 2.70A {Mycobacterium tuberculosis}
SCOP: c.69.1.3
Length = 304
Score = 24.8 bits (54), Expect = 7.6
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 26 IDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPE-YQSKISLS 67
+ +V + +G SM ++ L P+ + ++S
Sbjct: 110 LQANRHVKPTGSAV-VGLSMAASSALTLAIYHPQQFVYAGAMS 151
>3gff_A IROE-like serine hydrolase; NP_718593.1, structural genomics center
for structural genomics, JCSG, protein structure INI
PSI-2; 2.12A {Shewanella oneidensis}
Length = 331
Score = 24.6 bits (53), Expect = 7.6
Identities = 10/51 (19%), Positives = 18/51 (35%), Gaps = 4/51 (7%)
Query: 33 TGKKKVITIGHSMGTTNVLVAGSLRPEYQSK---ISLSILWAQAAFLGHMH 80
T V+ +GHS G + A S + S+ + +L +
Sbjct: 135 TNGINVL-VGHSFGGLVAMEALRTDRPLFSAYLALDTSLWFDSPHYLTLLE 184
>1ddz_A Carbonic anhydrase; alpha-beta-alpha, lyase; 2.20A {Porphyridium
purpureum} SCOP: c.53.2.1 c.53.2.1
Length = 496
Score = 24.5 bits (53), Expect = 8.3
Identities = 4/23 (17%), Positives = 9/23 (39%)
Query: 22 TTATIDYVLNVTGKKKVITIGHS 44
+ + Y + K ++ GH
Sbjct: 109 FLSVLQYAVQYLKVKHILVCGHY 131
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.136 0.393
Gapped
Lambda K H
0.267 0.0462 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,572,965
Number of extensions: 81326
Number of successful extensions: 273
Number of sequences better than 10.0: 1
Number of HSP's gapped: 273
Number of HSP's successfully gapped: 62
Length of query: 106
Length of database: 6,701,793
Length adjustment: 71
Effective length of query: 35
Effective length of database: 4,719,402
Effective search space: 165179070
Effective search space used: 165179070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 51 (24.1 bits)