RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy17377
         (106 letters)



>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
           [TaxId: 9615]}
          Length = 377

 Score = 45.1 bits (105), Expect = 3e-07
 Identities = 24/71 (33%), Positives = 35/71 (49%)

Query: 14  FHEIGIYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISLSILWAQA 73
           F E+  YD  ATID++L  TG+ K+  +GHS GTT   +A S  P+   +I      A  
Sbjct: 123 FDEMAKYDLPATIDFILKKTGQDKLHYVGHSQGTTIGFIAFSTNPKLAKRIKTFYALAPV 182

Query: 74  AFLGHMHMKYM 84
           A + +      
Sbjct: 183 ATVKYTETLIN 193


>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
           antarctica), form b [TaxId: 34362]}
          Length = 317

 Score = 31.2 bits (70), Expect = 0.015
 Identities = 8/42 (19%), Positives = 15/42 (35%)

Query: 24  ATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKIS 65
             I  +   +G  K+  +  S G        +  P  +SK+ 
Sbjct: 85  NAITALYAGSGNNKLPVLTWSQGGLVAQWGLTFFPSIRSKVD 126


>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 285

 Score = 29.4 bits (65), Expect = 0.057
 Identities = 10/46 (21%), Positives = 22/46 (47%)

Query: 19  IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKI 64
                  ++ ++ ++G+ KV  IGHS G   +    ++RP+  +  
Sbjct: 57  GEQLLQQVEEIVALSGQPKVNLIGHSHGGPTIRYVAAVRPDLIASA 102


>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId:
           42739]}
          Length = 319

 Score = 27.5 bits (60), Expect = 0.33
 Identities = 13/48 (27%), Positives = 20/48 (41%)

Query: 19  IYDTTATIDYVLNVTGKKKVITIGHSMGTTNVLVAGSLRPEYQSKISL 66
                A +  VL  TG  KV  IGHS G        ++ P+  + ++ 
Sbjct: 62  GEQLLAYVKQVLAATGATKVNLIGHSQGGLTSRYVAAVAPQLVASVTT 109


>d2h9fa2 d.21.1.4 (A:187-395) Hypothetical protein PA0793
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 209

 Score = 26.0 bits (57), Expect = 0.89
 Identities = 7/31 (22%), Positives = 12/31 (38%)

Query: 22  TTATIDYVLNVTGKKKVITIGHSMGTTNVLV 52
              T+  +    G++  +  GH  GT  V  
Sbjct: 144 IPGTLVNLAAGGGERSAVRFGHPSGTLRVGA 174


>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia
          coli [TaxId: 562]}
          Length = 86

 Score = 24.7 bits (54), Expect = 1.4
 Identities = 5/20 (25%), Positives = 8/20 (40%)

Query: 63 KISLSILWAQAAFLGHMHMK 82
             L+  +  AA LG   + 
Sbjct: 35 GTGLAEAFVTAALLGQQALP 54


>d1dqza_ c.69.1.3 (A:) Antigen 85c {Mycobacterium tuberculosis
           [TaxId: 1773]}
          Length = 280

 Score = 23.7 bits (50), Expect = 6.9
 Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 35  KKKVITIGHSMGTTNVLVAGSLRPE-YQSKISLS-ILWAQAAFLGHMHMKYMID 86
                 +G SM   + L+  +  P+ +    SLS  L    ++   +    M D
Sbjct: 113 PTGNAAVGLSMSGGSALILAAYYPQQFPYAASLSGFLNPSESWWPTLIGLAMND 166


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.324    0.136    0.393 

Gapped
Lambda     K      H
   0.267   0.0601    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 373,407
Number of extensions: 14225
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 12
Length of query: 106
Length of database: 2,407,596
Length adjustment: 66
Effective length of query: 40
Effective length of database: 1,501,416
Effective search space: 60056640
Effective search space used: 60056640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 47 (22.2 bits)