BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17378
         (181 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1HLG|A Chain A, Crystal Structure Of Human Gastric Lipase
 pdb|1HLG|B Chain B, Crystal Structure Of Human Gastric Lipase
          Length = 371

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 56/112 (50%), Gaps = 21/112 (18%)

Query: 37  EIISFWGYPSEEHKVQTEDGYILTNFRMP-------NPGGYPIIMF-HGLSVSSDCWLLR 88
           ++I++WGYP+EE++V TEDGYIL   R+P       N G  P++   HGL  S+  W+  
Sbjct: 10  QMITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLASATNWISN 69

Query: 89  NPKEDFGKSDFIVKEGSLLDVFEGFIS---------FFQPEIISFWGYPSEE 131
            P        FI+ +    DV+ G            ++ P+ + FW +  +E
Sbjct: 70  LPNNSLA---FILADAG-YDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDE 117



 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 42/70 (60%), Gaps = 8/70 (11%)

Query: 120 EIISFWGYPSEEHKVQTEDGYILTNFRMP-------NPGGYPIIMF-HGLSVSSDCWLLR 171
           ++I++WGYP+EE++V TEDGYIL   R+P       N G  P++   HGL  S+  W+  
Sbjct: 10  QMITYWGYPNEEYEVVTEDGYILEVNRIPYGKKNSGNTGQRPVVFLQHGLLASATNWISN 69

Query: 172 YEVNSYARLL 181
              NS A +L
Sbjct: 70  LPNNSLAFIL 79


>pdb|1K8Q|A Chain A, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
 pdb|1K8Q|B Chain B, Crystal Structure Of Dog Gastric Lipase In Complex With A
           Phosphonate Inhibitor
          Length = 377

 Score = 53.1 bits (126), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 35/112 (31%), Positives = 55/112 (49%), Gaps = 21/112 (18%)

Query: 37  EIISFWGYPSEEHKVQTEDGYILTNFRMP-------NPGGYPIIMF-HGLSVSSDCWLLR 88
           ++I++WGYP+EE++V TEDGYIL   R+P       N G  P+    HGL  S+  W+  
Sbjct: 18  QMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISN 77

Query: 89  NPKEDFGKSDFIVKEGSLLDVFEGFIS---------FFQPEIISFWGYPSEE 131
            P        FI+ +    DV+ G            ++ P+ + FW +  +E
Sbjct: 78  LPNNSLA---FILADAG-YDVWLGNSRGNTWARRNLYYSPDSVEFWAFSFDE 125



 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 8/70 (11%)

Query: 120 EIISFWGYPSEEHKVQTEDGYILTNFRMP-------NPGGYPIIMF-HGLSVSSDCWLLR 171
           ++I++WGYP+EE++V TEDGYIL   R+P       N G  P+    HGL  S+  W+  
Sbjct: 18  QMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWISN 77

Query: 172 YEVNSYARLL 181
              NS A +L
Sbjct: 78  LPNNSLAFIL 87


>pdb|2WB7|A Chain A, Pt26-6p
 pdb|2WB7|B Chain B, Pt26-6p
          Length = 526

 Score = 31.2 bits (69), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 30/69 (43%), Gaps = 9/69 (13%)

Query: 33  TLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKE 92
           TLK E  + WG+ +  + V T DG  L        G  PI     L +S   W+L   K 
Sbjct: 209 TLKAETTTAWGHVTGTNDVATIDGGXL--------GSLPIKFLQSLDLSGK-WVLYQNKY 259

Query: 93  DFGKSDFIV 101
               SDFI+
Sbjct: 260 AGALSDFII 268


>pdb|1AZW|A Chain A, Proline Iminopeptidase From Xanthomonas Campestris Pv.
          Citri
 pdb|1AZW|B Chain B, Proline Iminopeptidase From Xanthomonas Campestris Pv.
          Citri
          Length = 313

 Score = 29.6 bits (65), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 33 TLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHG 77
          TL PEI      P ++  ++ +D + L   +  NP G P++M HG
Sbjct: 3  TLYPEIT-----PYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHG 42



 Score = 26.9 bits (58), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 5/42 (11%)

Query: 119 PEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHG 160
           PEI      P ++  ++ +D + L   +  NP G P++M HG
Sbjct: 6   PEIT-----PYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHG 42


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.142    0.448 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,177,358
Number of Sequences: 62578
Number of extensions: 278484
Number of successful extensions: 575
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 7
length of query: 181
length of database: 14,973,337
effective HSP length: 93
effective length of query: 88
effective length of database: 9,153,583
effective search space: 805515304
effective search space used: 805515304
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)