Query psy17378
Match_columns 181
No_of_seqs 165 out of 1364
Neff 6.3
Searched_HMMs 46136
Date Fri Aug 16 20:56:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy17378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/17378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2624|consensus 100.0 2.1E-41 4.5E-46 301.9 5.5 138 30-174 32-181 (403)
2 PLN02872 triacylglycerol lipas 100.0 1.7E-30 3.8E-35 231.7 3.4 139 23-169 21-175 (395)
3 PF04083 Abhydro_lipase: Parti 99.9 1.2E-25 2.7E-30 153.1 5.9 55 35-89 1-63 (63)
4 PF04083 Abhydro_lipase: Parti 99.6 5.4E-16 1.2E-20 105.6 3.8 53 120-172 3-63 (63)
5 KOG2624|consensus 99.4 2.7E-13 5.9E-18 121.6 3.7 63 119-181 38-102 (403)
6 PLN02872 triacylglycerol lipas 98.9 1.3E-09 2.9E-14 97.6 3.6 64 118-181 33-103 (395)
7 TIGR01836 PHA_synth_III_C poly 97.7 6.8E-06 1.5E-10 71.5 -0.8 109 46-166 37-148 (350)
8 PLN02298 hydrolase, alpha/beta 97.1 0.00046 1E-08 59.0 3.6 74 35-117 21-98 (330)
9 PRK10985 putative hydrolase; P 96.8 0.00055 1.2E-08 59.0 1.7 66 44-117 29-98 (324)
10 PLN02385 hydrolase; alpha/beta 96.7 0.001 2.2E-08 57.7 2.6 68 41-117 56-126 (349)
11 TIGR01838 PHA_synth_I poly(R)- 96.7 0.00055 1.2E-08 63.9 0.8 99 58-167 173-275 (532)
12 PRK13604 luxD acyl transferase 96.5 0.0009 2E-08 58.5 1.1 112 43-169 6-123 (307)
13 PRK07868 acyl-CoA synthetase; 96.4 0.0011 2.3E-08 65.8 0.7 51 59-114 49-107 (994)
14 PLN02511 hydrolase 96.3 0.0024 5.2E-08 56.8 2.6 66 43-117 68-140 (388)
15 COG2267 PldB Lysophospholipase 96.0 0.0028 6.1E-08 54.8 1.1 59 47-115 10-70 (298)
16 TIGR01839 PHA_synth_II poly(R) 95.9 0.0022 4.8E-08 60.2 0.2 97 59-167 201-301 (560)
17 TIGR01607 PST-A Plasmodium sub 95.8 0.0036 7.8E-08 54.5 1.0 62 51-116 2-84 (332)
18 PRK05855 short chain dehydroge 95.8 0.0045 9.7E-08 56.2 1.5 58 49-117 5-62 (582)
19 PRK10749 lysophospholipase L2; 95.3 0.021 4.5E-07 49.3 3.9 61 47-117 31-92 (330)
20 PRK00870 haloalkane dehalogena 94.7 0.039 8.5E-07 46.4 4.0 66 43-118 16-85 (302)
21 TIGR03101 hydr2_PEP hydrolase, 94.7 0.028 6.2E-07 48.0 3.1 65 47-117 1-67 (266)
22 TIGR03343 biphenyl_bphD 2-hydr 94.6 0.023 5.1E-07 46.6 2.3 63 48-117 8-71 (282)
23 TIGR03695 menH_SHCHC 2-succiny 94.6 0.0042 9.1E-08 48.3 -2.1 38 69-117 1-38 (251)
24 PF12146 Hydrolase_4: Putative 94.6 0.0082 1.8E-07 42.1 -0.4 49 56-114 1-51 (79)
25 PLN02652 hydrolase; alpha/beta 94.3 0.012 2.6E-07 52.8 0.0 63 46-118 110-175 (395)
26 TIGR01250 pro_imino_pep_2 prol 93.7 0.076 1.6E-06 42.5 3.7 56 52-116 7-63 (288)
27 PHA02857 monoglyceride lipase; 93.2 0.11 2.3E-06 42.9 3.8 58 50-117 4-63 (276)
28 TIGR01249 pro_imino_pep_1 prol 92.6 0.18 3.8E-06 42.8 4.3 60 47-117 5-64 (306)
29 KOG1455|consensus 92.5 0.093 2E-06 46.0 2.5 121 37-167 18-142 (313)
30 PRK03592 haloalkane dehalogena 91.9 0.16 3.6E-06 42.3 3.3 75 53-141 13-87 (295)
31 PLN02211 methyl indole-3-aceta 91.4 0.11 2.5E-06 43.7 1.9 45 61-115 9-54 (273)
32 PRK05077 frsA fermentation/res 91.1 0.54 1.2E-05 42.4 5.9 67 38-114 160-230 (414)
33 PLN02824 hydrolase, alpha/beta 90.4 0.21 4.7E-06 41.6 2.6 52 54-117 15-66 (294)
34 PF01674 Lipase_2: Lipase (cla 90.3 0.014 3E-07 48.7 -4.7 83 69-166 1-87 (219)
35 COG3243 PhaC Poly(3-hydroxyalk 89.5 0.04 8.8E-07 50.3 -2.6 72 68-147 106-177 (445)
36 PRK06489 hypothetical protein; 89.2 0.45 9.8E-06 41.4 3.8 47 69-116 69-115 (360)
37 TIGR03056 bchO_mg_che_rel puta 89.2 0.34 7.4E-06 39.1 2.8 59 48-117 7-65 (278)
38 PLN02578 hydrolase 89.1 0.23 5E-06 43.2 1.9 79 40-131 59-137 (354)
39 TIGR02427 protocat_pcaD 3-oxoa 88.4 0.11 2.4E-06 40.4 -0.5 38 68-116 12-49 (251)
40 PF12697 Abhydrolase_6: Alpha/ 87.5 0.25 5.4E-06 37.6 0.9 34 72-116 1-34 (228)
41 KOG4178|consensus 87.0 0.65 1.4E-05 41.0 3.4 75 47-133 22-100 (322)
42 PRK03204 haloalkane dehalogena 86.5 0.81 1.7E-05 38.5 3.6 61 42-116 10-70 (286)
43 PLN03084 alpha/beta hydrolase 85.7 1.1 2.3E-05 40.2 4.1 63 43-116 101-163 (383)
44 TIGR00976 /NonD putative hydro 85.4 0.67 1.5E-05 43.1 2.8 105 51-166 1-109 (550)
45 TIGR03502 lipase_Pla1_cef extr 85.2 0.59 1.3E-05 46.0 2.3 56 49-114 420-484 (792)
46 TIGR02240 PHA_depoly_arom poly 84.7 1.5 3.3E-05 36.1 4.4 78 52-141 7-85 (276)
47 COG1647 Esterase/lipase [Gener 83.7 0.52 1.1E-05 39.9 1.1 37 68-114 14-50 (243)
48 COG0429 Predicted hydrolase of 83.3 1.8 3.8E-05 38.7 4.3 63 46-116 49-114 (345)
49 PLN03087 BODYGUARD 1 domain co 82.6 1.3 2.9E-05 41.0 3.4 60 68-133 200-260 (481)
50 TIGR01840 esterase_phb esteras 82.5 0.35 7.6E-06 38.9 -0.3 40 68-114 12-51 (212)
51 PF12695 Abhydrolase_5: Alpha/ 82.5 0.46 1E-05 34.7 0.3 34 71-114 1-34 (145)
52 PRK10566 esterase; Provisional 82.5 1.5 3.3E-05 35.4 3.4 37 69-115 27-63 (249)
53 PF07819 PGAP1: PGAP1-like pro 81.5 0.38 8.3E-06 39.9 -0.5 19 68-86 3-21 (225)
54 PRK04057 30S ribosomal protein 81.1 3 6.5E-05 34.6 4.7 58 8-65 57-116 (203)
55 COG4757 Predicted alpha/beta h 80.1 0.84 1.8E-05 39.1 1.1 87 49-144 8-98 (281)
56 PRK11126 2-succinyl-6-hydroxy- 78.8 1 2.2E-05 35.9 1.2 38 68-117 1-38 (242)
57 PF02273 Acyl_transf_2: Acyl t 78.8 3 6.4E-05 36.1 4.0 58 47-114 3-65 (294)
58 KOG1454|consensus 77.9 3.6 7.7E-05 36.1 4.4 38 68-114 57-94 (326)
59 PRK10673 acyl-CoA esterase; Pr 77.9 1.8 3.9E-05 34.7 2.4 38 68-116 15-52 (255)
60 KOG1838|consensus 76.9 3.5 7.6E-05 37.7 4.1 66 44-117 91-165 (409)
61 PF01015 Ribosomal_S3Ae: Ribos 76.9 3.7 8E-05 33.7 3.9 58 8-65 63-122 (194)
62 PRK10349 carboxylesterase BioH 74.3 1.6 3.5E-05 35.4 1.2 36 70-116 14-49 (256)
63 TIGR02821 fghA_ester_D S-formy 73.4 4 8.7E-05 34.2 3.4 40 68-114 41-80 (275)
64 TIGR03611 RutD pyrimidine util 72.7 2.2 4.7E-05 33.5 1.6 38 67-115 11-48 (257)
65 PRK10115 protease 2; Provision 72.6 7.9 0.00017 37.4 5.6 66 41-114 411-482 (686)
66 PLN00021 chlorophyllase 72.1 7.1 0.00015 34.0 4.8 63 43-115 21-88 (313)
67 PLN02965 Probable pheophorbida 72.1 1.8 4E-05 35.3 1.0 37 71-117 5-41 (255)
68 COG1890 RPS1A Ribosomal protei 69.1 8 0.00017 32.3 4.2 30 35-64 93-123 (214)
69 PF04270 Strep_his_triad: Stre 67.8 1.3 2.8E-05 29.1 -0.6 33 52-87 2-34 (53)
70 TIGR01738 bioH putative pimelo 65.7 3.3 7.1E-05 32.0 1.2 38 69-117 4-41 (245)
71 PRK14875 acetoin dehydrogenase 65.2 6.7 0.00015 33.4 3.2 37 67-114 129-165 (371)
72 PRK11071 esterase YqiA; Provis 64.9 3.6 7.9E-05 32.8 1.4 18 70-87 2-19 (190)
73 PRK07581 hypothetical protein; 64.1 9.2 0.0002 32.7 3.8 41 69-117 41-82 (339)
74 cd00707 Pancreat_lipase_like P 62.8 4.5 9.8E-05 34.3 1.6 41 67-115 34-75 (275)
75 PLN02442 S-formylglutathione h 61.8 9.6 0.00021 32.2 3.5 40 68-114 46-85 (283)
76 TIGR02778 ligD_pol DNA polymer 58.1 8.3 0.00018 32.9 2.4 80 33-114 16-96 (245)
77 KOG2382|consensus 57.8 5.2 0.00011 35.4 1.1 43 68-119 51-95 (315)
78 PF12715 Abhydrolase_7: Abhydr 56.1 10 0.00022 34.5 2.8 72 39-114 81-168 (390)
79 PF00561 Abhydrolase_1: alpha/ 55.7 0.73 1.6E-05 35.8 -4.1 64 107-174 1-67 (230)
80 cd04866 LigD_Pol_like_3 LigD_P 55.3 9.3 0.0002 32.2 2.2 55 56-114 21-76 (223)
81 TIGR01392 homoserO_Ac_trn homo 55.2 23 0.00049 30.6 4.7 42 68-116 30-82 (351)
82 KOG4409|consensus 55.0 18 0.00039 32.6 4.1 56 38-95 57-114 (365)
83 PLN02679 hydrolase, alpha/beta 55.0 9.9 0.00022 33.2 2.5 38 69-117 88-125 (360)
84 PRK00175 metX homoserine O-ace 54.8 11 0.00024 33.2 2.8 35 51-85 22-64 (379)
85 PLN02894 hydrolase, alpha/beta 52.3 32 0.00068 30.8 5.3 39 68-117 104-142 (402)
86 cd04928 ACT_TyrKc Uncharacteri 52.3 25 0.00054 24.0 3.6 37 31-67 14-51 (68)
87 TIGR03100 hydr1_PEP hydrolase, 50.4 26 0.00057 29.2 4.3 57 54-117 9-68 (274)
88 COG0596 MhpC Predicted hydrola 50.3 11 0.00023 28.4 1.7 39 69-115 21-59 (282)
89 cd04865 LigD_Pol_like_2 LigD_P 49.4 18 0.00039 30.5 3.1 55 56-114 21-81 (228)
90 cd04864 LigD_Pol_like_1 LigD_P 49.2 13 0.00029 31.3 2.2 55 56-114 21-82 (228)
91 PF06500 DUF1100: Alpha/beta h 48.6 37 0.00081 31.1 5.2 69 37-114 156-226 (411)
92 cd04862 PaeLigD_Pol_like PaeLi 48.0 20 0.00044 30.2 3.1 55 56-114 21-80 (227)
93 cd04927 ACT_ACR-like_2 Second 47.9 32 0.00069 23.4 3.7 39 29-67 11-50 (76)
94 PF06441 EHN: Epoxide hydrolas 46.5 22 0.00048 26.5 2.9 36 47-82 68-105 (112)
95 PRK10162 acetyl esterase; Prov 42.9 47 0.001 28.5 4.7 59 45-114 56-120 (318)
96 cd01766 Ufm1 Urm1-like ubiquit 41.8 45 0.00098 23.5 3.6 67 8-78 1-71 (82)
97 cd04861 LigD_Pol_like LigD_Pol 41.7 21 0.00045 30.2 2.3 55 56-114 21-80 (227)
98 KOG4391|consensus 40.8 69 0.0015 27.6 5.2 114 39-166 47-161 (300)
99 COG0412 Dienelactone hydrolase 40.2 37 0.0008 28.2 3.6 57 47-114 3-62 (236)
100 PRK11460 putative hydrolase; P 40.1 20 0.00042 29.4 1.9 20 68-87 15-34 (232)
101 cd04926 ACT_ACR_4 C-terminal 38.8 88 0.0019 20.7 4.7 35 33-67 16-50 (72)
102 cd01773 Faf1_like1_UBX Faf1 ik 38.6 30 0.00066 24.5 2.4 48 6-53 2-49 (82)
103 cd04900 ACT_UUR-like_1 ACT dom 38.5 54 0.0012 21.7 3.6 35 33-67 16-51 (73)
104 cd04925 ACT_ACR_2 ACT domain-c 38.4 47 0.001 22.3 3.3 39 29-67 11-49 (74)
105 TIGR02776 NHEJ_ligase_prk DNA 38.4 24 0.00051 33.5 2.4 55 56-114 317-373 (552)
106 PLN02980 2-oxoglutarate decarb 38.4 46 0.00099 35.6 4.6 61 43-114 1341-1405(1655)
107 PLN03084 alpha/beta hydrolase 37.8 47 0.001 29.8 4.1 48 122-169 97-144 (383)
108 KOG4409|consensus 36.0 15 0.00033 33.1 0.6 26 150-175 88-113 (365)
109 PRK08775 homoserine O-acetyltr 33.8 51 0.0011 28.3 3.6 28 55-83 44-71 (343)
110 TIGR01849 PHB_depoly_PhaZ poly 33.6 39 0.00084 30.8 2.9 107 39-166 68-180 (406)
111 COG1506 DAP2 Dipeptidyl aminop 33.3 1.3E+02 0.0028 28.7 6.4 69 38-114 357-431 (620)
112 KOG1454|consensus 33.3 27 0.00058 30.6 1.8 25 151-175 57-81 (326)
113 COG0400 Predicted esterase [Ge 32.9 31 0.00066 28.5 1.9 20 68-87 17-36 (207)
114 cd04863 MtLigD_Pol_like MtLigD 32.4 49 0.0011 28.0 3.1 58 56-114 21-81 (231)
115 PF09565 RE_NgoFVII: NgoFVII r 31.8 51 0.0011 28.9 3.2 31 35-65 224-256 (296)
116 PF01206 TusA: Sulfurtransfera 30.6 42 0.00091 22.1 2.0 41 21-62 29-69 (70)
117 PRK09633 ligD ATP-dependent DN 30.1 44 0.00095 32.1 2.7 55 56-114 360-415 (610)
118 PF05057 DUF676: Putative seri 29.5 24 0.00052 28.7 0.8 18 70-87 5-22 (217)
119 PF01738 DLH: Dienelactone hyd 28.6 19 0.00041 28.7 -0.0 37 68-114 13-49 (218)
120 PLN02578 hydrolase 27.8 70 0.0015 27.6 3.4 21 150-170 84-104 (354)
121 COG4822 CbiK Cobalamin biosynt 27.7 26 0.00056 29.8 0.6 38 68-114 137-175 (265)
122 PF02230 Abhydrolase_2: Phosph 27.3 23 0.0005 28.3 0.3 20 68-87 13-32 (216)
123 KOG1628|consensus 27.3 85 0.0018 26.8 3.6 43 36-78 108-157 (249)
124 cd03421 SirA_like_N SirA_like_ 26.6 55 0.0012 21.4 2.0 41 19-61 25-65 (67)
125 PF07137 VDE: Violaxanthin de- 26.5 1.1E+02 0.0023 25.5 4.0 46 43-89 55-122 (198)
126 PF10503 Esterase_phd: Esteras 24.8 86 0.0019 26.0 3.3 38 68-112 15-52 (220)
127 KOG3724|consensus 24.4 31 0.00068 34.5 0.6 107 50-166 61-194 (973)
128 PRK06489 hypothetical protein; 24.1 97 0.0021 26.8 3.6 18 152-169 69-86 (360)
129 cd04899 ACT_ACR-UUR-like_2 C-t 23.2 1.7E+02 0.0036 18.6 3.9 35 33-67 15-49 (70)
130 PRK03204 haloalkane dehalogena 23.2 1.2E+02 0.0026 25.2 3.9 42 125-169 10-51 (286)
131 PRK00870 haloalkane dehalogena 23.1 1.3E+02 0.0027 25.0 4.0 19 151-169 45-63 (302)
132 PRK10749 lysophospholipase L2; 22.4 1.1E+02 0.0025 26.0 3.7 46 122-168 24-70 (330)
133 cd03422 YedF YedF is a bacteri 22.2 81 0.0018 21.0 2.2 42 19-61 26-67 (69)
134 cd01771 Faf1_UBX Faf1 UBX doma 21.7 85 0.0018 21.8 2.3 46 8-53 3-48 (80)
135 cd03423 SirA SirA (also known 21.0 1.2E+02 0.0025 20.1 2.8 30 22-51 29-58 (69)
136 PLN02385 hydrolase; alpha/beta 20.7 1.5E+02 0.0033 25.3 4.2 42 127-168 59-103 (349)
No 1
>KOG2624|consensus
Probab=100.00 E-value=2.1e-41 Score=301.93 Aligned_cols=138 Identities=30% Similarity=0.507 Sum_probs=125.8
Q ss_pred CcCCCHHHHHhhcCCceeEEEEecCCCcEEEEEeeCCC--CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCc
Q psy17378 30 SFTTLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNP--GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLL 107 (181)
Q Consensus 30 ~~~~~~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~--~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~Gy 107 (181)
+....+.++|+++|||+|+|.|+|+|||||++||||++ +||||||||||++||+.|++|+|++||| |+|||+ ||
T Consensus 32 ~~~~~~~~~i~~~gy~~E~h~V~T~DgYiL~lhRIp~~~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLa---f~Lada-GY 107 (403)
T KOG2624|consen 32 ELVMDTPEIIEKYGYPVEEHEVTTEDGYILTLHRIPRGKKKRPVVLLQHGLLASSSSWVLNGPEQSLA---FLLADA-GY 107 (403)
T ss_pred hhcccHHHHHHHcCCceEEEEEEccCCeEEEEeeecCCCCCCCcEEEeeccccccccceecCccccHH---HHHHHc-CC
Confidence 44466899999999999999999999999999999976 7899999999999999999999999999 999999 99
Q ss_pred eeeeccc---------eecCcc-chhhhcCCccceeeeCCCcceEEEEecCCCCCCcEEEEeecccccccceecCCC
Q psy17378 108 DVFEGFI---------SFFQPE-IISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRYEV 174 (181)
Q Consensus 108 DVWl~n~---------~~l~~~-~~~~w~ys~de~avyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~~w~~~g~~ 174 (181)
||||||. ++++++ +.+||+|+|+|++.||+||.|+.|... +++.++.+.|||||++++++....
T Consensus 108 DVWLgN~RGn~ySr~h~~l~~~~~~~FW~FS~~Em~~yDLPA~IdyIL~~---T~~~kl~yvGHSQGtt~~fv~lS~ 181 (403)
T KOG2624|consen 108 DVWLGNNRGNTYSRKHKKLSPSSDKEFWDFSWHEMGTYDLPAMIDYILEK---TGQEKLHYVGHSQGTTTFFVMLSE 181 (403)
T ss_pred ceeeecCcCcccchhhcccCCcCCcceeecchhhhhhcCHHHHHHHHHHh---ccccceEEEEEEccchhheehhcc
Confidence 9999999 556775 888999999999999999999877665 588899999999999988877543
No 2
>PLN02872 triacylglycerol lipase
Probab=99.96 E-value=1.7e-30 Score=231.65 Aligned_cols=139 Identities=27% Similarity=0.507 Sum_probs=120.3
Q ss_pred hhhccCCCcCCCHHHHHhhcCCceeEEEEecCCCcEEEEEeeCCC-------CCCcEEEecccccccccccccCCCCCCC
Q psy17378 23 EDMLNRRSFTTLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNP-------GGYPIIMFHGLSVSSDCWLLRNPKEDFG 95 (181)
Q Consensus 23 ~~~~~~~~~~~~~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~-------~~~pVll~HGl~~ss~~~~~~~~~~sl~ 95 (181)
.+.++++.+.+.++|+|+++|||+|+|.|+|+|||+|+++|||++ +++||+|+||++++++.|..+++.++|+
T Consensus 21 ~~~~~~~~~~t~~~~~i~~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla 100 (395)
T PLN02872 21 SNLLRRSPVESLCAQLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLG 100 (395)
T ss_pred cccccCCCchhhHHHHHHHcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchH
Confidence 356777889999999999999999999999999999999999853 3689999999999999999998889999
Q ss_pred cchhhhhcCCCceeeecccee---------cCccchhhhcCCccceeeeCCCcceEEEEecCCCCCCcEEEEeecccccc
Q psy17378 96 KSDFIVKEGSLLDVFEGFISF---------FQPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSD 166 (181)
Q Consensus 96 ~~~~~Lad~~GyDVWl~n~~~---------l~~~~~~~w~ys~de~avyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~ 166 (181)
++||++ |||||++|+++ +++.+.++|+|+++|++.+|+++.|..+... ++ ..+.+.|+|+|+.
T Consensus 101 ---~~La~~-GydV~l~n~RG~~~s~gh~~~~~~~~~fw~~s~~e~a~~Dl~a~id~i~~~---~~-~~v~~VGhS~Gg~ 172 (395)
T PLN02872 101 ---FILADH-GFDVWVGNVRGTRWSYGHVTLSEKDKEFWDWSWQELALYDLAEMIHYVYSI---TN-SKIFIVGHSQGTI 172 (395)
T ss_pred ---HHHHhC-CCCcccccccccccccCCCCCCccchhccCCcHHHHHHHHHHHHHHHHHhc---cC-CceEEEEECHHHH
Confidence 999999 99999999833 3456788999999999999999998876543 23 3577889999988
Q ss_pred cce
Q psy17378 167 CWL 169 (181)
Q Consensus 167 ~w~ 169 (181)
..+
T Consensus 173 ~~~ 175 (395)
T PLN02872 173 MSL 175 (395)
T ss_pred HHH
Confidence 544
No 3
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=99.92 E-value=1.2e-25 Score=153.07 Aligned_cols=55 Identities=53% Similarity=0.880 Sum_probs=40.4
Q ss_pred HHHHHhhcCCceeEEEEecCCCcEEEEEeeCCCC--------CCcEEEecccccccccccccC
Q psy17378 35 KPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPG--------GYPIIMFHGLSVSSDCWLLRN 89 (181)
Q Consensus 35 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~--------~~pVll~HGl~~ss~~~~~~~ 89 (181)
++|+|+++||++|+|.|+|+|||+|+|||||+++ ||||||||||++||+.|++||
T Consensus 1 ~~~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~wv~ng 63 (63)
T PF04083_consen 1 VPELIEKHGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDWVLNG 63 (63)
T ss_dssp HHHHHHHTT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGGCSS-
T ss_pred CHHHHHHcCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHHHcCC
Confidence 4689999999999999999999999999999764 899999999999999999975
No 4
>PF04083 Abhydro_lipase: Partial alpha/beta-hydrolase lipase region; InterPro: IPR006693 The alpha/beta hydrolase fold is common to several hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is similar: an alpha/beta sheet, not barrel, of eight beta-sheets connected by alpha-helices []. This entry represents the N-terminal part of an alpha/beta hydrolase domain found in a number of lipases.; GO: 0006629 lipid metabolic process; PDB: 1K8Q_B 1HLG_B.
Probab=99.60 E-value=5.4e-16 Score=105.61 Aligned_cols=53 Identities=53% Similarity=0.848 Sum_probs=37.4
Q ss_pred cchhhhcCCccceeeeCCCcceEEEEecCCCC--------CCcEEEEeecccccccceecC
Q psy17378 120 EIISFWGYPSEEHKVQTEDGYILTNFRMPNPG--------GYPIIMFHGLSVSSDCWLLRY 172 (181)
Q Consensus 120 ~~~~~w~ys~de~avyDld~yIl~i~rI~~~~--------~~~vll~HGl~~~s~~w~~~g 172 (181)
+.++.++|++|+|.|.|.||||+++|||+.+. ++|||++||++++|+.|++||
T Consensus 3 ~~i~~~GY~~E~h~V~T~DGYiL~l~RIp~~~~~~~~~~~k~pVll~HGL~~ss~~wv~ng 63 (63)
T PF04083_consen 3 ELIEKHGYPCEEHEVTTEDGYILTLHRIPPGKNSSNQNKKKPPVLLQHGLLQSSDDWVLNG 63 (63)
T ss_dssp HHHHHTT---EEEEEE-TTSEEEEEEEE-SBTTCTTTTTT--EEEEE--TT--GGGGCSS-
T ss_pred HHHHHcCCCcEEEEEEeCCCcEEEEEEccCCCCCcccCCCCCcEEEECCcccChHHHHcCC
Confidence 45789999999999999999999999998654 677999999999999999986
No 5
>KOG2624|consensus
Probab=99.37 E-value=2.7e-13 Score=121.62 Aligned_cols=63 Identities=51% Similarity=0.782 Sum_probs=57.7
Q ss_pred ccchhhhcCCccceeeeCCCcceEEEEecCCC--CCCcEEEEeecccccccceecCCCCCccccC
Q psy17378 119 PEIISFWGYPSEEHKVQTEDGYILTNFRMPNP--GGYPIIMFHGLSVSSDCWLLRYEVNSYARLL 181 (181)
Q Consensus 119 ~~~~~~w~ys~de~avyDld~yIl~i~rI~~~--~~~~vll~HGl~~~s~~w~~~g~~~sLaf~l 181 (181)
++..+.|+|+.|+|.|+|.||||+++||||.. .++||+++||++++|+.|++|+|++||||+|
T Consensus 38 ~~~i~~~gy~~E~h~V~T~DgYiL~lhRIp~~~~~rp~Vll~HGLl~sS~~Wv~n~p~~sLaf~L 102 (403)
T KOG2624|consen 38 PEIIEKYGYPVEEHEVTTEDGYILTLHRIPRGKKKRPVVLLQHGLLASSSSWVLNGPEQSLAFLL 102 (403)
T ss_pred HHHHHHcCCceEEEEEEccCCeEEEEeeecCCCCCCCcEEEeeccccccccceecCccccHHHHH
Confidence 45689999999999999999999999999865 3566889999999999999999999999986
No 6
>PLN02872 triacylglycerol lipase
Probab=98.87 E-value=1.3e-09 Score=97.60 Aligned_cols=64 Identities=34% Similarity=0.635 Sum_probs=56.3
Q ss_pred CccchhhhcCCccceeeeCCCcceEEEEecCCC-------CCCcEEEEeecccccccceecCCCCCccccC
Q psy17378 118 QPEIISFWGYPSEEHKVQTEDGYILTNFRMPNP-------GGYPIIMFHGLSVSSDCWLLRYEVNSYARLL 181 (181)
Q Consensus 118 ~~~~~~~w~ys~de~avyDld~yIl~i~rI~~~-------~~~~vll~HGl~~~s~~w~~~g~~~sLaf~l 181 (181)
.++.++.++|++|+|.+.|.|||++.++||+.. .++||+++||+.+++..|..++++++|||.|
T Consensus 33 ~~~~i~~~gy~~e~h~v~T~DGy~L~l~ri~~~~~~~~~~~~~~Vll~HGl~~ss~~w~~~~~~~sla~~L 103 (395)
T PLN02872 33 CAQLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFLNSPEQSLGFIL 103 (395)
T ss_pred HHHHHHHcCCCceEEEEECCCCcEEEEEEcCCCCCCCCCCCCCeEEEeCcccccccceeecCcccchHHHH
Confidence 356688999999999999999999999999742 2467999999999999999999999999864
No 7
>TIGR01836 PHA_synth_III_C poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit. This model represents the PhaC subunit of a heterodimeric form of polyhydroxyalkanoic acid (PHA) synthase. Excepting the PhaC of Bacillus megaterium (which needs PhaR), all members require PhaE (TIGR01834) for activity and are designated class III. This enzyme builds ester polymers for carbon and energy storage that accumulate in inclusions, and both this enzyme and the depolymerase associate with the inclusions. Class III enzymes polymerize short-chain-length hydroxyalkanoates.
Probab=97.68 E-value=6.8e-06 Score=71.55 Aligned_cols=109 Identities=14% Similarity=0.040 Sum_probs=68.9
Q ss_pred eeEEEEecCCCcEEEEEeeCC---CCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecCccch
Q psy17378 46 SEEHKVQTEDGYILTNFRMPN---PGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEII 122 (181)
Q Consensus 46 ~e~h~v~T~DGyiL~l~Ri~~---~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~~~~~ 122 (181)
.+-..|-..+++.|.-++ |. ..++||+++||+..++..|.. .+.++++ ..|+++ ||+||+.++.+...
T Consensus 37 ~~~~~v~~~~~~~l~~~~-~~~~~~~~~pvl~v~~~~~~~~~~d~-~~~~~~~---~~L~~~-G~~V~~~D~~g~g~--- 107 (350)
T TIGR01836 37 TPKEVVYREDKVVLYRYT-PVKDNTHKTPLLIVYALVNRPYMLDL-QEDRSLV---RGLLER-GQDVYLIDWGYPDR--- 107 (350)
T ss_pred CCCceEEEcCcEEEEEec-CCCCcCCCCcEEEeccccccceeccC-CCCchHH---HHHHHC-CCeEEEEeCCCCCH---
Confidence 344556666766555543 32 246799999999777666533 4578999 889999 99999999743222
Q ss_pred hhhcCCccceeeeCCCcceEEEEecCCCCCCcEEEEeecccccc
Q psy17378 123 SFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSD 166 (181)
Q Consensus 123 ~~w~ys~de~avyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~ 166 (181)
....++++++...++++.+..+... .+...+...|+|+|+.
T Consensus 108 s~~~~~~~d~~~~~~~~~v~~l~~~---~~~~~i~lvGhS~GG~ 148 (350)
T TIGR01836 108 ADRYLTLDDYINGYIDKCVDYICRT---SKLDQISLLGICQGGT 148 (350)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHH---hCCCcccEEEECHHHH
Confidence 1234566777666666665544332 1222344557777655
No 8
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=97.09 E-value=0.00046 Score=59.04 Aligned_cols=74 Identities=14% Similarity=0.140 Sum_probs=52.9
Q ss_pred HHHHHhhcCCceeEEEEecCCCcEEEEEeeC-CC---CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceee
Q psy17378 35 KPEIISFWGYPSEEHKVQTEDGYILTNFRMP-NP---GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVF 110 (181)
Q Consensus 35 ~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~-~~---~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVW 110 (181)
..+...-.|.+.|...+++.||-.|-..+.. .+ .++.|+|+||+..++ .|.. ..++ ..|+++ ||.|+
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~VvllHG~~~~~-~~~~----~~~~---~~L~~~-Gy~V~ 91 (330)
T PLN02298 21 EEEYYALKGIKGSKSFFTSPRGLSLFTRSWLPSSSSPPRALIFMVHGYGNDI-SWTF----QSTA---IFLAQM-GFACF 91 (330)
T ss_pred HHHHhhccCCccccceEEcCCCCEEEEEEEecCCCCCCceEEEEEcCCCCCc-ceeh----hHHH---HHHHhC-CCEEE
Confidence 4556677787888888999999988876543 22 345599999997554 4432 2355 568889 99999
Q ss_pred eccceec
Q psy17378 111 EGFISFF 117 (181)
Q Consensus 111 l~n~~~l 117 (181)
..+..+.
T Consensus 92 ~~D~rGh 98 (330)
T PLN02298 92 ALDLEGH 98 (330)
T ss_pred EecCCCC
Confidence 9998443
No 9
>PRK10985 putative hydrolase; Provisional
Probab=96.82 E-value=0.00055 Score=59.04 Aligned_cols=66 Identities=12% Similarity=0.037 Sum_probs=48.7
Q ss_pred CceeEEEEecCCCcEEEEEeeCCC----CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 44 YPSEEHKVQTEDGYILTNFRMPNP----GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 44 y~~e~h~v~T~DGyiL~l~Ri~~~----~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
.+.+...++|+||-.+.+.....+ .+|+|+++||+..++..... ..++ -.|+++ ||.|...|.++.
T Consensus 29 ~~~~~~~~~~~dg~~~~l~w~~~~~~~~~~p~vll~HG~~g~~~~~~~----~~~~---~~l~~~-G~~v~~~d~rG~ 98 (324)
T PRK10985 29 FTPYWQRLELPDGDFVDLAWSEDPAQARHKPRLVLFHGLEGSFNSPYA----HGLL---EAAQKR-GWLGVVMHFRGC 98 (324)
T ss_pred CCcceeEEECCCCCEEEEecCCCCccCCCCCEEEEeCCCCCCCcCHHH----HHHH---HHHHHC-CCEEEEEeCCCC
Confidence 445667799999998888776432 46889999999877654222 2455 667889 999999998654
No 10
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=96.72 E-value=0.001 Score=57.75 Aligned_cols=68 Identities=13% Similarity=0.043 Sum_probs=49.5
Q ss_pred hcCCceeEEEEecCCCcEEEEEeeCC---CCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 41 FWGYPSEEHKVQTEDGYILTNFRMPN---PGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 41 ~~gy~~e~h~v~T~DGyiL~l~Ri~~---~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
.-|+..|+....|.||..|......+ +.+++|+|+||+..++..|.. .++ -.|+++ ||.|...+..+.
T Consensus 56 ~~~~~~~~~~~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~~~-----~~~---~~l~~~-g~~v~~~D~~G~ 126 (349)
T PLN02385 56 PSGIKTEESYEVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFFFE-----GIA---RKIASS-GYGVFAMDYPGF 126 (349)
T ss_pred ccCcceeeeeEEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchHHH-----HHH---HHHHhC-CCEEEEecCCCC
Confidence 34677888889999999887666533 256789999999877654322 234 457888 999999998443
No 11
>TIGR01838 PHA_synth_I poly(R)-hydroxyalkanoic acid synthase, class I. This model represents the class I subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs with three to five carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=96.69 E-value=0.00055 Score=63.93 Aligned_cols=99 Identities=8% Similarity=-0.066 Sum_probs=64.4
Q ss_pred EEEEEeeCCC----CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecCccchhhhcCCcccee
Q psy17378 58 ILTNFRMPNP----GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGYPSEEHK 133 (181)
Q Consensus 58 iL~l~Ri~~~----~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~~~~~~~w~ys~de~a 133 (181)
.++|.++.+. .++|||++||+....-.|-. -|++|+. ..|+++ ||+|++.++.....+. -+++++++.
T Consensus 173 ~~eLi~Y~P~t~~~~~~PlLiVp~~i~k~yilDL-~p~~Slv---~~L~~q-Gf~V~~iDwrgpg~s~---~~~~~ddY~ 244 (532)
T TIGR01838 173 LFQLIQYEPTTETVHKTPLLIVPPWINKYYILDL-RPQNSLV---RWLVEQ-GHTVFVISWRNPDASQ---ADKTFDDYI 244 (532)
T ss_pred cEEEEEeCCCCCcCCCCcEEEECcccccceeeec-ccchHHH---HHHHHC-CcEEEEEECCCCCccc---ccCChhhhH
Confidence 3455565433 57999999999766666643 4678999 888999 9999999984433221 234566666
Q ss_pred eeCCCcceEEEEecCCCCCCcEEEEeeccccccc
Q psy17378 134 VQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDC 167 (181)
Q Consensus 134 vyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~~ 167 (181)
..+..+.|..+.++ .+...+...|++.|...
T Consensus 245 ~~~i~~al~~v~~~---~g~~kv~lvG~cmGGtl 275 (532)
T TIGR01838 245 RDGVIAALEVVEAI---TGEKQVNCVGYCIGGTL 275 (532)
T ss_pred HHHHHHHHHHHHHh---cCCCCeEEEEECcCcHH
Confidence 65566666554433 23444555677777653
No 12
>PRK13604 luxD acyl transferase; Provisional
Probab=96.54 E-value=0.0009 Score=58.54 Aligned_cols=112 Identities=9% Similarity=-0.007 Sum_probs=77.2
Q ss_pred CCceeEEEEecCCCcEEEEEeeCCC-----CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 43 GYPSEEHKVQTEDGYILTNFRMPNP-----GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 43 gy~~e~h~v~T~DGyiL~l~Ri~~~-----~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
.+..++|.+.++||..|.-+-++++ +++.|+++||...+...+ ..+| -.|+++ ||-|-.-+..+.
T Consensus 6 ~~~~~~~~~~~~dG~~L~Gwl~~P~~~~~~~~~~vIi~HGf~~~~~~~------~~~A---~~La~~-G~~vLrfD~rg~ 75 (307)
T PRK13604 6 SFKTIDHVICLENGQSIRVWETLPKENSPKKNNTILIASGFARRMDHF------AGLA---EYLSSN-GFHVIRYDSLHH 75 (307)
T ss_pred cccchhheEEcCCCCEEEEEEEcCcccCCCCCCEEEEeCCCCCChHHH------HHHH---HHHHHC-CCEEEEecCCCC
Confidence 3456789999999999999988774 456799999999876432 3477 888999 999998886332
Q ss_pred -CccchhhhcCCccceeeeCCCcceEEEEecCCCCCCcEEEEeecccccccce
Q psy17378 118 -QPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWL 169 (181)
Q Consensus 118 -~~~~~~~w~ys~de~avyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~~w~ 169 (181)
-.++-++-++++.. .+.|..+.|..+.+. ....+..+|+|+|+..=.
T Consensus 76 ~GeS~G~~~~~t~s~-g~~Dl~aaid~lk~~----~~~~I~LiG~SmGgava~ 123 (307)
T PRK13604 76 VGLSSGTIDEFTMSI-GKNSLLTVVDWLNTR----GINNLGLIAASLSARIAY 123 (307)
T ss_pred CCCCCCccccCcccc-cHHHHHHHHHHHHhc----CCCceEEEEECHHHHHHH
Confidence 22233443444332 467887777655332 223467889999988633
No 13
>PRK07868 acyl-CoA synthetase; Validated
Probab=96.39 E-value=0.0011 Score=65.78 Aligned_cols=51 Identities=24% Similarity=0.266 Sum_probs=41.5
Q ss_pred EEEEeeCCC--------CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 59 LTNFRMPNP--------GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 59 L~l~Ri~~~--------~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
++|.|+.+. .++||+|+||+..++..|-.. +.+|+. -.|+++ ||+||+.++
T Consensus 49 ~~l~~y~~~~~~~~~~~~~~plllvhg~~~~~~~~d~~-~~~s~v---~~L~~~-g~~v~~~d~ 107 (994)
T PRK07868 49 YRLRRYFPPDNRPGQPPVGPPVLMVHPMMMSADMWDVT-RDDGAV---GILHRA-GLDPWVIDF 107 (994)
T ss_pred EEEEEeCCCCccccccCCCCcEEEECCCCCCccceecC-CcccHH---HHHHHC-CCEEEEEcC
Confidence 366676432 468999999999999999664 467888 888999 999999996
No 14
>PLN02511 hydrolase
Probab=96.34 E-value=0.0024 Score=56.82 Aligned_cols=66 Identities=14% Similarity=0.019 Sum_probs=47.6
Q ss_pred CCceeEEEEecCCCcEEEEEeeC------CCCCCcEEEeccccccccc-ccccCCCCCCCcchhhhhcCCCceeeeccce
Q psy17378 43 GYPSEEHKVQTEDGYILTNFRMP------NPGGYPIIMFHGLSVSSDC-WLLRNPKEDFGKSDFIVKEGSLLDVFEGFIS 115 (181)
Q Consensus 43 gy~~e~h~v~T~DGyiL~l~Ri~------~~~~~pVll~HGl~~ss~~-~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~ 115 (181)
..+.+...+.|+||-.+.+-... +..+|+|+|+||+..++.. |+. .++ ..+.++ ||.|...|.+
T Consensus 68 ~~~~~re~l~~~DG~~~~ldw~~~~~~~~~~~~p~vvllHG~~g~s~~~y~~-----~~~---~~~~~~-g~~vv~~d~r 138 (388)
T PLN02511 68 AVRYRRECLRTPDGGAVALDWVSGDDRALPADAPVLILLPGLTGGSDDSYVR-----HML---LRARSK-GWRVVVFNSR 138 (388)
T ss_pred CCceeEEEEECCCCCEEEEEecCcccccCCCCCCEEEEECCCCCCCCCHHHH-----HHH---HHHHHC-CCEEEEEecC
Confidence 34456778999999999986653 1257789999999887754 643 233 344577 9999999985
Q ss_pred ec
Q psy17378 116 FF 117 (181)
Q Consensus 116 ~l 117 (181)
+.
T Consensus 139 G~ 140 (388)
T PLN02511 139 GC 140 (388)
T ss_pred CC
Confidence 54
No 15
>COG2267 PldB Lysophospholipase [Lipid metabolism]
Probab=95.96 E-value=0.0028 Score=54.78 Aligned_cols=59 Identities=19% Similarity=0.142 Sum_probs=49.4
Q ss_pred eEEEEecCCCcEEEEEeeCCC--CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccce
Q psy17378 47 EEHKVQTEDGYILTNFRMPNP--GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFIS 115 (181)
Q Consensus 47 e~h~v~T~DGyiL~l~Ri~~~--~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~ 115 (181)
.+....+.||-.+..++-... ++..|+++||+...+..|.- ++ +.|+.+ ||+|+..+..
T Consensus 10 ~~~~~~~~d~~~~~~~~~~~~~~~~g~Vvl~HG~~Eh~~ry~~------la---~~l~~~-G~~V~~~D~R 70 (298)
T COG2267 10 TEGYFTGADGTRLRYRTWAAPEPPKGVVVLVHGLGEHSGRYEE------LA---DDLAAR-GFDVYALDLR 70 (298)
T ss_pred ccceeecCCCceEEEEeecCCCCCCcEEEEecCchHHHHHHHH------HH---HHHHhC-CCEEEEecCC
Confidence 556788999999998887654 34789999999999998743 77 888999 9999999993
No 16
>TIGR01839 PHA_synth_II poly(R)-hydroxyalkanoic acid synthase, class II. This model represents the class II subfamily of poly(R)-hydroxyalkanoate synthases, which polymerizes hydroxyacyl-CoAs, typically with six to fourteen carbons in the hydroxyacyl backbone into aliphatic esters termed poly(R)-hydroxyalkanoic acids. These polymers accumulate as carbon and energy storage inclusions in many species and can amount to 90 percent of the dry weight of cell.
Probab=95.89 E-value=0.0022 Score=60.19 Aligned_cols=97 Identities=11% Similarity=0.014 Sum_probs=67.6
Q ss_pred EEEEeeCCC----CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecCccchhhhcCCccceee
Q psy17378 59 LTNFRMPNP----GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGYPSEEHKV 134 (181)
Q Consensus 59 L~l~Ri~~~----~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~~~~~~~w~ys~de~av 134 (181)
++|.++.+. .+.|||+++.+....-.|-. .|++|+. -.|.++ ||||++..|.. |+ .+..++++++|..
T Consensus 201 ~eLiqY~P~te~v~~~PLLIVPp~INK~YIlDL-~P~~SlV---r~lv~q-G~~VflIsW~n--P~-~~~r~~~ldDYv~ 272 (560)
T TIGR01839 201 LELIQYKPITEQQHARPLLVVPPQINKFYIFDL-SPEKSFV---QYCLKN-QLQVFIISWRN--PD-KAHREWGLSTYVD 272 (560)
T ss_pred eEEEEeCCCCCCcCCCcEEEechhhhhhheeec-CCcchHH---HHHHHc-CCeEEEEeCCC--CC-hhhcCCCHHHHHH
Confidence 455665432 57899999999855555543 5789999 888899 99999999844 32 2235678888874
Q ss_pred eCCCcceEEEEecCCCCCCcEEEEeeccccccc
Q psy17378 135 QTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDC 167 (181)
Q Consensus 135 yDld~yIl~i~rI~~~~~~~vll~HGl~~~s~~ 167 (181)
.++..|..+..+ ++...+-.+|+++|.+.
T Consensus 273 -~i~~Ald~V~~~---tG~~~vnl~GyC~GGtl 301 (560)
T TIGR01839 273 -ALKEAVDAVRAI---TGSRDLNLLGACAGGLT 301 (560)
T ss_pred -HHHHHHHHHHHh---cCCCCeeEEEECcchHH
Confidence 677777666655 45555666777777653
No 17
>TIGR01607 PST-A Plasmodium subtelomeric family (PST-A). These genes are preferentially located in the subtelomeric regions of the chromosomes of both P. falciparum and P. yoelii.
Probab=95.78 E-value=0.0036 Score=54.48 Aligned_cols=62 Identities=18% Similarity=0.170 Sum_probs=44.0
Q ss_pred EecCCCcEEEEEeeCC-CCCCcEEEecccccccc-cccccC---------------C----CCCCCcchhhhhcCCCcee
Q psy17378 51 VQTEDGYILTNFRMPN-PGGYPIIMFHGLSVSSD-CWLLRN---------------P----KEDFGKSDFIVKEGSLLDV 109 (181)
Q Consensus 51 v~T~DGyiL~l~Ri~~-~~~~pVll~HGl~~ss~-~~~~~~---------------~----~~sl~~~~~~Lad~~GyDV 109 (181)
+++.||..|..++-.. ..+..|+++||+...+. .++... + +.+++ ..|+++ ||+|
T Consensus 2 ~~~~~g~~l~~~~~~~~~~kg~v~i~HG~~eh~~~~~~~~~~~~~~~~~~~~~~~~ry~~y~~~~~---~~l~~~-G~~V 77 (332)
T TIGR01607 2 FRNKDGLLLKTYSWIVKNAIGIIVLIHGLKSHLRLQFLKINAKIVNNDRAVLIDTDNYYIYKDSWI---ENFNKN-GYSV 77 (332)
T ss_pred ccCCCCCeEEEeeeeccCCeEEEEEECCCchhhhhhhhhcCcccCCCCeeEEEcCCcceEeeHHHH---HHHHHC-CCcE
Confidence 5688999888777643 36778999999998886 222100 0 02356 678899 9999
Q ss_pred eecccee
Q psy17378 110 FEGFISF 116 (181)
Q Consensus 110 Wl~n~~~ 116 (181)
+..+..+
T Consensus 78 ~~~D~rG 84 (332)
T TIGR01607 78 YGLDLQG 84 (332)
T ss_pred EEecccc
Confidence 9999843
No 18
>PRK05855 short chain dehydrogenase; Validated
Probab=95.75 E-value=0.0045 Score=56.22 Aligned_cols=58 Identities=16% Similarity=0.249 Sum_probs=42.6
Q ss_pred EEEecCCCcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 49 HKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 49 h~v~T~DGyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
..+++.||..|..+....+.++||+|+||+.+++..|.. +. -.| .. ||.|+..+..+.
T Consensus 5 ~~~~~~~g~~l~~~~~g~~~~~~ivllHG~~~~~~~w~~------~~---~~L-~~-~~~Vi~~D~~G~ 62 (582)
T PRK05855 5 RTVVSSDGVRLAVYEWGDPDRPTVVLVHGYPDNHEVWDG------VA---PLL-AD-RFRVVAYDVRGA 62 (582)
T ss_pred EEEEeeCCEEEEEEEcCCCCCCeEEEEcCCCchHHHHHH------HH---HHh-hc-ceEEEEecCCCC
Confidence 445667888887766655568899999999999999853 22 234 56 999998888433
No 19
>PRK10749 lysophospholipase L2; Provisional
Probab=95.26 E-value=0.021 Score=49.27 Aligned_cols=61 Identities=13% Similarity=-0.056 Sum_probs=45.4
Q ss_pred eEEEEecCCCcEEEEEeeCC-CCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 47 EEHKVQTEDGYILTNFRMPN-PGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 47 e~h~v~T~DGyiL~l~Ri~~-~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
|+..+...||+.|......+ ..+++|+|+||+..++..|.. ++ ..|+++ ||+|+..+..+.
T Consensus 31 ~~~~~~~~~g~~l~~~~~~~~~~~~~vll~HG~~~~~~~y~~------~~---~~l~~~-g~~v~~~D~~G~ 92 (330)
T PRK10749 31 EEAEFTGVDDIPIRFVRFRAPHHDRVVVICPGRIESYVKYAE------LA---YDLFHL-GYDVLIIDHRGQ 92 (330)
T ss_pred cceEEEcCCCCEEEEEEccCCCCCcEEEEECCccchHHHHHH------HH---HHHHHC-CCeEEEEcCCCC
Confidence 55666788999887776544 367789999999877766533 44 557788 999999998443
No 20
>PRK00870 haloalkane dehalogenase; Provisional
Probab=94.69 E-value=0.039 Score=46.44 Aligned_cols=66 Identities=23% Similarity=0.216 Sum_probs=43.9
Q ss_pred CCceeEEEEe--cCCCcEEEEEeeCCC--CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecC
Q psy17378 43 GYPSEEHKVQ--TEDGYILTNFRMPNP--GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQ 118 (181)
Q Consensus 43 gy~~e~h~v~--T~DGyiL~l~Ri~~~--~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~ 118 (181)
.||.....|. .-||-...++-...+ .++||+|+||..+++..|-. +. -.|++. ||.|+..+..+..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~i~y~~~G~~~~~~lvliHG~~~~~~~w~~------~~---~~L~~~-gy~vi~~Dl~G~G 85 (302)
T PRK00870 16 DYPFAPHYVDVDDGDGGPLRMHYVDEGPADGPPVLLLHGEPSWSYLYRK------MI---PILAAA-GHRVIAPDLIGFG 85 (302)
T ss_pred CCCCCceeEeecCCCCceEEEEEEecCCCCCCEEEEECCCCCchhhHHH------HH---HHHHhC-CCEEEEECCCCCC
Confidence 4554444444 334555555544433 47899999999999988843 33 446778 9999999984443
No 21
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=94.67 E-value=0.028 Score=48.00 Aligned_cols=65 Identities=8% Similarity=-0.060 Sum_probs=46.3
Q ss_pred eEEEEecCCCcEEEEEeeCCCC--CCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 47 EEHKVQTEDGYILTNFRMPNPG--GYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 47 e~h~v~T~DGyiL~l~Ri~~~~--~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
|..++++++|.....++-|... +++|+++||+......|... -..++ -.|+++ ||.|+..+..+.
T Consensus 1 ~~~~l~~~~g~~~~~~~~p~~~~~~~~VlllHG~g~~~~~~~~~--~~~la---~~La~~-Gy~Vl~~Dl~G~ 67 (266)
T TIGR03101 1 HPFFLDAPHGFRFCLYHPPVAVGPRGVVIYLPPFAEEMNKSRRM--VALQA---RAFAAG-GFGVLQIDLYGC 67 (266)
T ss_pred CCEEecCCCCcEEEEEecCCCCCCceEEEEECCCcccccchhHH--HHHHH---HHHHHC-CCEEEEECCCCC
Confidence 3467889999999999987653 56799999987654433211 02355 677889 999999998443
No 22
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=94.58 E-value=0.023 Score=46.61 Aligned_cols=63 Identities=16% Similarity=0.093 Sum_probs=40.2
Q ss_pred EEEEecCCCcE-EEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 48 EHKVQTEDGYI-LTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 48 ~h~v~T~DGyi-L~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
...+.|.+|-. .+++-...++++||+|+||+.+++..|.... ..+ ..++++ ||.|+..+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~y~~~g~~~~ivllHG~~~~~~~~~~~~--~~~----~~l~~~-~~~vi~~D~~G~ 71 (282)
T TIGR03343 8 KFVKINEKGLSNFRIHYNEAGNGEAVIMLHGGGPGAGGWSNYY--RNI----GPFVDA-GYRVILKDSPGF 71 (282)
T ss_pred eEEEcccccccceeEEEEecCCCCeEEEECCCCCchhhHHHHH--HHH----HHHHhC-CCEEEEECCCCC
Confidence 34566666543 3444333446789999999988888884311 112 234577 999999998443
No 23
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=94.57 E-value=0.0042 Score=48.33 Aligned_cols=38 Identities=11% Similarity=0.085 Sum_probs=30.0
Q ss_pred CCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 69 GYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 69 ~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
+++|+|+||+..++..|.. +. ..|+ + ||+|+..+..+.
T Consensus 1 ~~~vv~~hG~~~~~~~~~~------~~---~~L~-~-~~~v~~~d~~g~ 38 (251)
T TIGR03695 1 KPVLVFLHGFLGSGADWQA------LI---ELLG-P-HFRCLAIDLPGH 38 (251)
T ss_pred CCEEEEEcCCCCchhhHHH------HH---HHhc-c-cCeEEEEcCCCC
Confidence 5789999999999998843 44 5566 7 999999998443
No 24
>PF12146 Hydrolase_4: Putative lysophospholipase; InterPro: IPR022742 This domain is found in bacteria and eukaryotes and is approximately 110 amino acids in length. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins.
Probab=94.56 E-value=0.0082 Score=42.11 Aligned_cols=49 Identities=18% Similarity=0.136 Sum_probs=38.2
Q ss_pred CcEEEEEeeCCC-C-CCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 56 GYILTNFRMPNP-G-GYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 56 GyiL~l~Ri~~~-~-~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
|..|-..+.+++ + |..|+++||+...+..| ..++ -.|+++ ||.|...+.
T Consensus 1 G~~L~~~~w~p~~~~k~~v~i~HG~~eh~~ry------~~~a---~~L~~~-G~~V~~~D~ 51 (79)
T PF12146_consen 1 GTKLFYRRWKPENPPKAVVVIVHGFGEHSGRY------AHLA---EFLAEQ-GYAVFAYDH 51 (79)
T ss_pred CcEEEEEEecCCCCCCEEEEEeCCcHHHHHHH------HHHH---HHHHhC-CCEEEEECC
Confidence 455666665443 3 78899999999888865 3477 888999 999999888
No 25
>PLN02652 hydrolase; alpha/beta fold family protein
Probab=94.29 E-value=0.012 Score=52.80 Aligned_cols=63 Identities=14% Similarity=-0.016 Sum_probs=46.0
Q ss_pred eeEEEEecCCCcEEEEEeeCC---CCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecC
Q psy17378 46 SEEHKVQTEDGYILTNFRMPN---PGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQ 118 (181)
Q Consensus 46 ~e~h~v~T~DGyiL~l~Ri~~---~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~ 118 (181)
.++-.+...||..|-.....+ ..+++|+++||+..++..|. .++ ..|+++ ||.|+..+..+..
T Consensus 110 ~~~~~~~~~~~~~l~~~~~~p~~~~~~~~Vl~lHG~~~~~~~~~------~~a---~~L~~~-Gy~V~~~D~rGhG 175 (395)
T PLN02652 110 WATSLFYGARRNALFCRSWAPAAGEMRGILIIIHGLNEHSGRYL------HFA---KQLTSC-GFGVYAMDWIGHG 175 (395)
T ss_pred EEEEEEECCCCCEEEEEEecCCCCCCceEEEEECCchHHHHHHH------HHH---HHHHHC-CCEEEEeCCCCCC
Confidence 455667788888777555433 25678999999988877763 355 667889 9999999985443
No 26
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=93.75 E-value=0.076 Score=42.52 Aligned_cols=56 Identities=18% Similarity=0.026 Sum_probs=37.3
Q ss_pred ecCCCcEEEEEeeCCC-CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeecccee
Q psy17378 52 QTEDGYILTNFRMPNP-GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISF 116 (181)
Q Consensus 52 ~T~DGyiL~l~Ri~~~-~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~ 116 (181)
.|-||..+...+...+ .++||+++||...++..|.. .+. ..+.+. ||.|+..+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~vl~~hG~~g~~~~~~~-----~~~---~~l~~~-g~~vi~~d~~G 63 (288)
T TIGR01250 7 ITVDGGYHLFTKTGGEGEKIKLLLLHGGPGMSHEYLE-----NLR---ELLKEE-GREVIMYDQLG 63 (288)
T ss_pred ecCCCCeEEEEeccCCCCCCeEEEEcCCCCccHHHHH-----HHH---HHHHhc-CCEEEEEcCCC
Confidence 3444555555554433 47899999998777765543 234 556777 99999999843
No 27
>PHA02857 monoglyceride lipase; Provisional
Probab=93.18 E-value=0.11 Score=42.87 Aligned_cols=58 Identities=10% Similarity=-0.150 Sum_probs=42.6
Q ss_pred EEecCCCcEEEEEeeCC--CCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 50 KVQTEDGYILTNFRMPN--PGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 50 ~v~T~DGyiL~l~Ri~~--~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
.....||+.|...+..+ .+++.|+|+||+.+++..|.. ++ -.|++. ||-|...+..+.
T Consensus 4 ~~~~~~g~~l~~~~~~~~~~~~~~v~llHG~~~~~~~~~~------~~---~~l~~~-g~~via~D~~G~ 63 (276)
T PHA02857 4 CMFNLDNDYIYCKYWKPITYPKALVFISHGAGEHSGRYEE------LA---ENISSL-GILVFSHDHIGH 63 (276)
T ss_pred eeecCCCCEEEEEeccCCCCCCEEEEEeCCCccccchHHH------HH---HHHHhC-CCEEEEccCCCC
Confidence 34567999888877544 245567777999999888843 45 557888 999998888443
No 28
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=92.59 E-value=0.18 Score=42.84 Aligned_cols=60 Identities=17% Similarity=0.025 Sum_probs=39.7
Q ss_pred eEEEEecCCCcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 47 EEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 47 e~h~v~T~DGyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
++-.+...||..|.......++++||+|+||..+++..|.. .. + +... +|+|...+..+.
T Consensus 5 ~~~~~~~~~~~~l~y~~~g~~~~~~lvllHG~~~~~~~~~~------~~---~-~~~~-~~~vi~~D~~G~ 64 (306)
T TIGR01249 5 VSGYLNVSDNHQLYYEQSGNPDGKPVVFLHGGPGSGTDPGC------RR---F-FDPE-TYRIVLFDQRGC 64 (306)
T ss_pred cCCeEEcCCCcEEEEEECcCCCCCEEEEECCCCCCCCCHHH------Hh---c-cCcc-CCEEEEECCCCC
Confidence 34577888888877666444457899999998776544311 11 2 2346 899999998443
No 29
>KOG1455|consensus
Probab=92.46 E-value=0.093 Score=46.03 Aligned_cols=121 Identities=15% Similarity=0.054 Sum_probs=70.0
Q ss_pred HHHhhcCCceeEEEEecCCC-cEEEEEeeCCC---CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeec
Q psy17378 37 EIISFWGYPSEEHKVQTEDG-YILTNFRMPNP---GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEG 112 (181)
Q Consensus 37 ~~i~~~gy~~e~h~v~T~DG-yiL~l~Ri~~~---~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~ 112 (181)
+.-...+-..+.-.+++.+| ...+-...|-. .+.-|+++||....+.. .. ++++ -.||.. ||-|+-.
T Consensus 18 ~~~~~~~~~~~~~~~~n~rG~~lft~~W~p~~~~~pr~lv~~~HG~g~~~s~-~~----~~~a---~~l~~~-g~~v~a~ 88 (313)
T KOG1455|consen 18 EYYGDGGVTYSESFFTNPRGAKLFTQSWLPLSGTEPRGLVFLCHGYGEHSSW-RY----QSTA---KRLAKS-GFAVYAI 88 (313)
T ss_pred hhcCCCccceeeeeEEcCCCCEeEEEecccCCCCCCceEEEEEcCCcccchh-hH----HHHH---HHHHhC-CCeEEEe
Confidence 33334444456667889999 44455555522 45569999999766533 22 4577 788999 9999988
Q ss_pred cceecCccchhhhcCCccceeeeCCCcceEEEEecCCCCCCcEEEEeeccccccc
Q psy17378 113 FISFFQPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDC 167 (181)
Q Consensus 113 n~~~l~~~~~~~w~ys~de~avyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~~ 167 (181)
+..+.-.++-..---+-.++.+-|.-.+..++...+...+.|.|++ |+|+|.+.
T Consensus 89 D~~GhG~SdGl~~yi~~~d~~v~D~~~~~~~i~~~~e~~~lp~FL~-GeSMGGAV 142 (313)
T KOG1455|consen 89 DYEGHGRSDGLHAYVPSFDLVVDDVISFFDSIKEREENKGLPRFLF-GESMGGAV 142 (313)
T ss_pred eccCCCcCCCCcccCCcHHHHHHHHHHHHHHHhhccccCCCCeeee-ecCcchHH
Confidence 8833332222111222233444444445444333333456777765 77777663
No 30
>PRK03592 haloalkane dehalogenase; Provisional
Probab=91.92 E-value=0.16 Score=42.34 Aligned_cols=75 Identities=16% Similarity=0.098 Sum_probs=45.2
Q ss_pred cCCCcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecCccchhhhcCCccce
Q psy17378 53 TEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGYPSEEH 132 (181)
Q Consensus 53 T~DGyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~~~~~~~w~ys~de~ 132 (181)
|-||..+.-.+. +.++||+|+||+.+++..|-. +. -.|++. + .|+..+..++-.+....-+|+++++
T Consensus 13 ~~~g~~i~y~~~--G~g~~vvllHG~~~~~~~w~~------~~---~~L~~~-~-~via~D~~G~G~S~~~~~~~~~~~~ 79 (295)
T PRK03592 13 EVLGSRMAYIET--GEGDPIVFLHGNPTSSYLWRN------II---PHLAGL-G-RCLAPDLIGMGASDKPDIDYTFADH 79 (295)
T ss_pred EECCEEEEEEEe--CCCCEEEEECCCCCCHHHHHH------HH---HHHhhC-C-EEEEEcCCCCCCCCCCCCCCCHHHH
Confidence 347766554433 357899999999999999943 34 456666 6 9998888443322211124555544
Q ss_pred eeeCCCcce
Q psy17378 133 KVQTEDGYI 141 (181)
Q Consensus 133 avyDld~yI 141 (181)
+ .|+.+.+
T Consensus 80 a-~dl~~ll 87 (295)
T PRK03592 80 A-RYLDAWF 87 (295)
T ss_pred H-HHHHHHH
Confidence 3 3344443
No 31
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=91.45 E-value=0.11 Score=43.66 Aligned_cols=45 Identities=22% Similarity=0.304 Sum_probs=34.1
Q ss_pred EEee-CCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccce
Q psy17378 61 NFRM-PNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFIS 115 (181)
Q Consensus 61 l~Ri-~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~ 115 (181)
+++| |.+++|+|+|+||+..++..|.. +. ..|+++ ||.|...+..
T Consensus 9 ~~~~~~~~~~p~vvliHG~~~~~~~w~~------~~---~~L~~~-g~~vi~~dl~ 54 (273)
T PLN02211 9 VTDMKPNRQPPHFVLIHGISGGSWCWYK------IR---CLMENS-GYKVTCIDLK 54 (273)
T ss_pred cccccccCCCCeEEEECCCCCCcCcHHH------HH---HHHHhC-CCEEEEeccc
Confidence 3444 34578889999999999988833 44 567788 9999988873
No 32
>PRK05077 frsA fermentation/respiration switch protein; Reviewed
Probab=91.05 E-value=0.54 Score=42.40 Aligned_cols=67 Identities=15% Similarity=0.097 Sum_probs=46.0
Q ss_pred HHhhcCCceeEEEEecCCCcEEEEEe-eCCC--CCCcEEEeccccccc-ccccccCCCCCCCcchhhhhcCCCceeeecc
Q psy17378 38 IISFWGYPSEEHKVQTEDGYILTNFR-MPNP--GGYPIIMFHGLSVSS-DCWLLRNPKEDFGKSDFIVKEGSLLDVFEGF 113 (181)
Q Consensus 38 ~i~~~gy~~e~h~v~T~DGyiL~l~R-i~~~--~~~pVll~HGl~~ss-~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n 113 (181)
-++..++++|+..+.++||..|.-+- .|.+ ++|.|+++||+.+.. +.|.. ++ -.|++. ||.|...+
T Consensus 160 a~~~~~~~~e~v~i~~~~g~~l~g~l~~P~~~~~~P~Vli~gG~~~~~~~~~~~------~~---~~La~~-Gy~vl~~D 229 (414)
T PRK05077 160 AAKRLPGELKELEFPIPGGGPITGFLHLPKGDGPFPTVLVCGGLDSLQTDYYRL------FR---DYLAPR-GIAMLTID 229 (414)
T ss_pred HHhhcCCceEEEEEEcCCCcEEEEEEEECCCCCCccEEEEeCCcccchhhhHHH------HH---HHHHhC-CCEEEEEC
Confidence 46678999999999999997676543 4543 445566666665432 34422 33 456788 99999888
Q ss_pred c
Q psy17378 114 I 114 (181)
Q Consensus 114 ~ 114 (181)
.
T Consensus 230 ~ 230 (414)
T PRK05077 230 M 230 (414)
T ss_pred C
Confidence 7
No 33
>PLN02824 hydrolase, alpha/beta fold family protein
Probab=90.36 E-value=0.21 Score=41.61 Aligned_cols=52 Identities=17% Similarity=0.324 Sum_probs=35.8
Q ss_pred CCCcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 54 EDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 54 ~DGyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
-||..+...+. ...++||+|+||+.+++..|... . -.|++. |.|+..+..+.
T Consensus 15 ~~~~~i~y~~~-G~~~~~vlllHG~~~~~~~w~~~------~---~~L~~~--~~vi~~DlpG~ 66 (294)
T PLN02824 15 WKGYNIRYQRA-GTSGPALVLVHGFGGNADHWRKN------T---PVLAKS--HRVYAIDLLGY 66 (294)
T ss_pred EcCeEEEEEEc-CCCCCeEEEECCCCCChhHHHHH------H---HHHHhC--CeEEEEcCCCC
Confidence 36777764443 22468999999999999999642 2 335544 58998888443
No 34
>PF01674 Lipase_2: Lipase (class 2); InterPro: IPR002918 Lipases or triacylglycerol acylhydrolases hydrolyse ester bonds in triacylglycerol giving diacylglycerol, monoacylglycerol, glycerol and free fatty acids []. This group of lipases has been called class 2 as they are not clearly related to other lipase families, and includes LipA and LipB from Bacillus subtilis [] and uncharacterised proteins from Caenorhabditis.; PDB: 2VTV_B 2X76_A 2X5X_A 2QXU_A 3QMM_A 1I6W_A 3D2C_J 2QXT_B 1R50_A 1T2N_A ....
Probab=90.31 E-value=0.014 Score=48.75 Aligned_cols=83 Identities=14% Similarity=0.075 Sum_probs=40.4
Q ss_pred CCcEEEeccccc-ccccccccCCCCCCCcchhhhhcCCCce---eeeccceecCccchhhhcCCccceeeeCCCcceEEE
Q psy17378 69 GYPIIMFHGLSV-SSDCWLLRNPKEDFGKSDFIVKEGSLLD---VFEGFISFFQPEIISFWGYPSEEHKVQTEDGYILTN 144 (181)
Q Consensus 69 ~~pVll~HGl~~-ss~~~~~~~~~~sl~~~~~~Lad~~GyD---VWl~n~~~l~~~~~~~w~ys~de~avyDld~yIl~i 144 (181)
+.||+|+||... ....|-. ++ -.|+++ ||. |+-.|.-.......-.+..+..+.. ..+..||+.+
T Consensus 1 ~~PVVlVHG~~~~~~~~w~~------~~---~~l~~~-GY~~~~vya~tyg~~~~~~~~~~~~~~~~~~-~~l~~fI~~V 69 (219)
T PF01674_consen 1 NRPVVLVHGTGGNAYSNWST------LA---PYLKAA-GYCDSEVYALTYGSGNGSPSVQNAHMSCESA-KQLRAFIDAV 69 (219)
T ss_dssp S--EEEE--TTTTTCGGCCH------HH---HHHHHT-T--CCCEEEE--S-CCHHTHHHHHHB-HHHH-HHHHHHHHHH
T ss_pred CCCEEEECCCCcchhhCHHH------HH---HHHHHc-CCCcceeEeccCCCCCCCCcccccccchhhH-HHHHHHHHHH
Confidence 469999999998 5566733 45 567889 997 7888872222111111111112222 3345577655
Q ss_pred EecCCCCCCcEEEEeecccccc
Q psy17378 145 FRMPNPGGYPIIMFHGLSVSSD 166 (181)
Q Consensus 145 ~rI~~~~~~~vll~HGl~~~s~ 166 (181)
.. .++. ++=..|||+++.
T Consensus 70 l~---~TGa-kVDIVgHS~G~~ 87 (219)
T PF01674_consen 70 LA---YTGA-KVDIVGHSMGGT 87 (219)
T ss_dssp HH---HHT---EEEEEETCHHH
T ss_pred HH---hhCC-EEEEEEcCCcCH
Confidence 43 3566 777778888876
No 35
>COG3243 PhaC Poly(3-hydroxyalkanoate) synthetase [Lipid metabolism]
Probab=89.54 E-value=0.04 Score=50.26 Aligned_cols=72 Identities=17% Similarity=-0.000 Sum_probs=51.7
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecCccchhhhcCCccceeeeCCCcceEEEEec
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGYPSEEHKVQTEDGYILTNFRM 147 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~~~~~~~w~ys~de~avyDld~yIl~i~rI 147 (181)
.++|+|++|-....-..|-. .|++|+. ++|.++ |.|||+..+ .+|+.... ...+++|....+...|..+..+
T Consensus 106 ~~~PlLiVpP~iNk~yi~Dl-~~~~s~V---~~l~~~-g~~vfvIsw--~nPd~~~~-~~~~edYi~e~l~~aid~v~~i 177 (445)
T COG3243 106 LKRPLLIVPPWINKFYILDL-SPEKSLV---RWLLEQ-GLDVFVISW--RNPDASLA-AKNLEDYILEGLSEAIDTVKDI 177 (445)
T ss_pred CCCceEeeccccCceeEEeC-CCCccHH---HHHHHc-CCceEEEec--cCchHhhh-hccHHHHHHHHHHHHHHHHHHH
Confidence 57899999998777767655 5688999 999999 999999886 44543222 4566677665555555555554
No 36
>PRK06489 hypothetical protein; Provisional
Probab=89.22 E-value=0.45 Score=41.44 Aligned_cols=47 Identities=9% Similarity=-0.042 Sum_probs=27.8
Q ss_pred CCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeecccee
Q psy17378 69 GYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISF 116 (181)
Q Consensus 69 ~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~ 116 (181)
+|||+|+||+.+++..|....-...|.+..-.+..+ +|.|...+..+
T Consensus 69 gpplvllHG~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~Via~Dl~G 115 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFLSPTFAGELFGPGQPLDAS-KYFIILPDGIG 115 (360)
T ss_pred CCeEEEeCCCCCchhhhccchhHHHhcCCCCccccc-CCEEEEeCCCC
Confidence 789999999999988885211001110000011235 89999888833
No 37
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=89.18 E-value=0.34 Score=39.12 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=40.7
Q ss_pred EEEEecCCCcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 48 EHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 48 ~h~v~T~DGyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
.++.+|-||+.+........++++|+++||+.+++..|.. +. -.| .+ +|.|...+..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~g~~~~~~vv~~hG~~~~~~~~~~------~~---~~l-~~-~~~vi~~D~~G~ 65 (278)
T TIGR03056 7 CSRRVTVGPFHWHVQDMGPTAGPLLLLLHGTGASTHSWRD------LM---PPL-AR-SFRVVAPDLPGH 65 (278)
T ss_pred ccceeeECCEEEEEEecCCCCCCeEEEEcCCCCCHHHHHH------HH---HHH-hh-CcEEEeecCCCC
Confidence 3445566888887766554467899999999999988843 22 223 34 788888887433
No 38
>PLN02578 hydrolase
Probab=89.12 E-value=0.23 Score=43.23 Aligned_cols=79 Identities=16% Similarity=0.151 Sum_probs=46.6
Q ss_pred hhcCCceeEEEEecCCCcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecCc
Q psy17378 40 SFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQP 119 (181)
Q Consensus 40 ~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~~ 119 (181)
+..+++.+.+...+-+|..+.-.. .++++||+|+||+.+++..|... ++ . |+ + +|.|...+..+...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~i~Y~~--~g~g~~vvliHG~~~~~~~w~~~-----~~---~-l~-~-~~~v~~~D~~G~G~ 125 (354)
T PLN02578 59 ERLPFKKEGYNFWTWRGHKIHYVV--QGEGLPIVLIHGFGASAFHWRYN-----IP---E-LA-K-KYKVYALDLLGFGW 125 (354)
T ss_pred ccccccCCCceEEEECCEEEEEEE--cCCCCeEEEECCCCCCHHHHHHH-----HH---H-Hh-c-CCEEEEECCCCCCC
Confidence 334555544444455565544332 34678999999999999888542 22 2 33 4 79999888844433
Q ss_pred cchhhhcCCccc
Q psy17378 120 EIISFWGYPSEE 131 (181)
Q Consensus 120 ~~~~~w~ys~de 131 (181)
++.....|+.++
T Consensus 126 S~~~~~~~~~~~ 137 (354)
T PLN02578 126 SDKALIEYDAMV 137 (354)
T ss_pred CCCcccccCHHH
Confidence 333333455443
No 39
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=88.43 E-value=0.11 Score=40.38 Aligned_cols=38 Identities=11% Similarity=0.007 Sum_probs=27.7
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeecccee
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISF 116 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~ 116 (181)
++|+++++||..+++..|.. +. -.| .. ||.|+..+..+
T Consensus 12 ~~~~li~~hg~~~~~~~~~~------~~---~~l-~~-~~~v~~~d~~G 49 (251)
T TIGR02427 12 GAPVLVFINSLGTDLRMWDP------VL---PAL-TP-DFRVLRYDKRG 49 (251)
T ss_pred CCCeEEEEcCcccchhhHHH------HH---HHh-hc-ccEEEEecCCC
Confidence 46778999999999888732 22 233 35 99999988843
No 40
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=87.47 E-value=0.25 Score=37.60 Aligned_cols=34 Identities=18% Similarity=0.225 Sum_probs=26.2
Q ss_pred EEEecccccccccccccCCCCCCCcchhhhhcCCCceeeecccee
Q psy17378 72 IIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISF 116 (181)
Q Consensus 72 Vll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~ 116 (181)
|+|+||...++..|.. +. -.|+ + ||+|+..+..+
T Consensus 1 vv~~hG~~~~~~~~~~------~~---~~l~-~-~~~v~~~d~~G 34 (228)
T PF12697_consen 1 VVFLHGFGGSSESWDP------LA---EALA-R-GYRVIAFDLPG 34 (228)
T ss_dssp EEEE-STTTTGGGGHH------HH---HHHH-T-TSEEEEEECTT
T ss_pred eEEECCCCCCHHHHHH------HH---HHHh-C-CCEEEEEecCC
Confidence 7899999999988855 44 4454 7 99999999843
No 41
>KOG4178|consensus
Probab=87.05 E-value=0.65 Score=41.04 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=51.3
Q ss_pred eEEEEecCCCcEEEEEeeCCC--CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecCccc-hh
Q psy17378 47 EEHKVQTEDGYILTNFRMPNP--GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEI-IS 123 (181)
Q Consensus 47 e~h~v~T~DGyiL~l~Ri~~~--~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~~~~-~~ 123 (181)
-+|+..|-+| +.+|=...+ .+|.|+|+||+=.+..+|.-. ... ||+. ||-|-..+.+++..++ ++
T Consensus 22 ~~hk~~~~~g--I~~h~~e~g~~~gP~illlHGfPe~wyswr~q----~~~-----la~~-~~rviA~DlrGyG~Sd~P~ 89 (322)
T KOG4178|consen 22 ISHKFVTYKG--IRLHYVEGGPGDGPIVLLLHGFPESWYSWRHQ----IPG-----LASR-GYRVIAPDLRGYGFSDAPP 89 (322)
T ss_pred cceeeEEEcc--EEEEEEeecCCCCCEEEEEccCCccchhhhhh----hhh-----hhhc-ceEEEecCCCCCCCCCCCC
Confidence 4577778888 665555433 688899999999999999553 233 6788 8998888886665443 22
Q ss_pred h-hcCCcccee
Q psy17378 124 F-WGYPSEEHK 133 (181)
Q Consensus 124 ~-w~ys~de~a 133 (181)
. ..|++++.+
T Consensus 90 ~~~~Yt~~~l~ 100 (322)
T KOG4178|consen 90 HISEYTIDELV 100 (322)
T ss_pred CcceeeHHHHH
Confidence 2 456655543
No 42
>PRK03204 haloalkane dehalogenase; Provisional
Probab=86.53 E-value=0.81 Score=38.50 Aligned_cols=61 Identities=15% Similarity=0.018 Sum_probs=40.0
Q ss_pred cCCceeEEEEecCCCcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeecccee
Q psy17378 42 WGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISF 116 (181)
Q Consensus 42 ~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~ 116 (181)
++||.+...+++. |..+... ..+.++||+|+||+.+++..|-.. +. + | .+ +|.|...+..+
T Consensus 10 ~~~~~~~~~~~~~-~~~i~y~--~~G~~~~iv~lHG~~~~~~~~~~~-----~~---~-l-~~-~~~vi~~D~~G 70 (286)
T PRK03204 10 QLYPFESRWFDSS-RGRIHYI--DEGTGPPILLCHGNPTWSFLYRDI-----IV---A-L-RD-RFRCVAPDYLG 70 (286)
T ss_pred ccccccceEEEcC-CcEEEEE--ECCCCCEEEEECCCCccHHHHHHH-----HH---H-H-hC-CcEEEEECCCC
Confidence 5677788788874 5544322 234578999999998877777431 12 2 2 24 78888888743
No 43
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=85.65 E-value=1.1 Score=40.23 Aligned_cols=63 Identities=8% Similarity=0.023 Sum_probs=41.8
Q ss_pred CCceeEEEEecCCCcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeecccee
Q psy17378 43 GYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISF 116 (181)
Q Consensus 43 gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~ 116 (181)
|.+.-.+.-.+.|||.+....-..+.++||+|+||+.+++..|-. +. -.|+ . +|.|+..+..+
T Consensus 101 ~~~~~~~~~~~~~~~~~~y~~~G~~~~~~ivllHG~~~~~~~w~~------~~---~~L~-~-~~~Via~DlpG 163 (383)
T PLN03084 101 GLKMGAQSQASSDLFRWFCVESGSNNNPPVLLIHGFPSQAYSYRK------VL---PVLS-K-NYHAIAFDWLG 163 (383)
T ss_pred cccccceeEEcCCceEEEEEecCCCCCCeEEEECCCCCCHHHHHH------HH---HHHh-c-CCEEEEECCCC
Confidence 344334445567888775443333357899999999999999853 22 2343 5 89999888843
No 44
>TIGR00976 /NonD putative hydrolase, CocE/NonD family. This model represents a protein subfamily that includes the cocaine esterase CocE, several glutaryl-7-ACA acylases, and the putative diester hydrolase NonD of Streptomyces griseus (all hydrolases). This family shows extensive, low-level similarity to a family of xaa-pro dipeptidyl-peptidases, and local similarity by PSI-BLAST to many other hydrolases.
Probab=85.38 E-value=0.67 Score=43.09 Aligned_cols=105 Identities=13% Similarity=-0.082 Sum_probs=55.8
Q ss_pred EecCCCcEEEEEee-CCC--CCCcEEEeccccccccc-ccccCCCCCCCcchhhhhcCCCceeeeccceecCccchhhhc
Q psy17378 51 VQTEDGYILTNFRM-PNP--GGYPIIMFHGLSVSSDC-WLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWG 126 (181)
Q Consensus 51 v~T~DGyiL~l~Ri-~~~--~~~pVll~HGl~~ss~~-~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~~~~~~~w~ 126 (181)
|++.||..|...-+ |.+ +.|+|++.||...++.. +.. ....+ -.++.+ ||-|...+.++...+.-++..
T Consensus 1 i~~~DG~~L~~~~~~P~~~~~~P~Il~~~gyg~~~~~~~~~---~~~~~---~~l~~~-Gy~vv~~D~RG~g~S~g~~~~ 73 (550)
T TIGR00976 1 VPMRDGTRLAIDVYRPAGGGPVPVILSRTPYGKDAGLRWGL---DKTEP---AWFVAQ-GYAVVIQDTRGRGASEGEFDL 73 (550)
T ss_pred CcCCCCCEEEEEEEecCCCCCCCEEEEecCCCCchhhcccc---ccccH---HHHHhC-CcEEEEEeccccccCCCceEe
Confidence 57899998874332 432 45678889998765531 111 12234 467788 999999998554333322222
Q ss_pred CCccceeeeCCCcceEEEEecCCCCCCcEEEEeecccccc
Q psy17378 127 YPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSD 166 (181)
Q Consensus 127 ys~de~avyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~ 166 (181)
+. .....|.-+.|..+-..+-.++ .+.+.|+|.++.
T Consensus 74 ~~--~~~~~D~~~~i~~l~~q~~~~~--~v~~~G~S~GG~ 109 (550)
T TIGR00976 74 LG--SDEAADGYDLVDWIAKQPWCDG--NVGMLGVSYLAV 109 (550)
T ss_pred cC--cccchHHHHHHHHHHhCCCCCC--cEEEEEeChHHH
Confidence 22 2233344444443322221222 333446666554
No 45
>TIGR03502 lipase_Pla1_cef extracellular lipase, Pla-1/cef family. Members of this protein family are bacterial lipoproteins largely from the Gammaproteobacteria. Characterized members are expressed in extracellularly and have esterase activity. Members include the lipase Pla-1 from Aeromonas hydrophila (AF092033) and CHO cell elongation factor (cef) from Vibrio hollisae
Probab=85.18 E-value=0.59 Score=45.95 Aligned_cols=56 Identities=20% Similarity=0.224 Sum_probs=43.2
Q ss_pred EEEecCCCcEEEEEee---------CCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 49 HKVQTEDGYILTNFRM---------PNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 49 h~v~T~DGyiL~l~Ri---------~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
..+.+.||+.+...|. |..+.|+|+++||+..+...|.. ++ -.|+++ ||.|+..+.
T Consensus 420 ~~~~~p~~~~i~~~~~~~g~~~~~~p~~g~P~VVllHG~~g~~~~~~~------lA---~~La~~-Gy~VIaiDl 484 (792)
T TIGR03502 420 VLLTTPNGPVIAAFRAGTGLETFAAPTDGWPVVIYQHGITGAKENALA------FA---GTLAAA-GVATIAIDH 484 (792)
T ss_pred eEEEecCcchhhhhhcccccccccCCCCCCcEEEEeCCCCCCHHHHHH------HH---HHHHhC-CcEEEEeCC
Confidence 3778899998876663 22245689999999999998843 55 567888 999998887
No 46
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=84.74 E-value=1.5 Score=36.13 Aligned_cols=78 Identities=14% Similarity=0.119 Sum_probs=44.7
Q ss_pred ecCCCcEEEEEeeCCC-CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecCccchhhhcCCcc
Q psy17378 52 QTEDGYILTNFRMPNP-GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGYPSE 130 (181)
Q Consensus 52 ~T~DGyiL~l~Ri~~~-~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~~~~~~~w~ys~d 130 (181)
.+-||..+.......+ +++||+|.||+.+++..|.. +. -.| .. +|.|+..+..+.-.++...-.|+++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~plvllHG~~~~~~~w~~------~~---~~L-~~-~~~vi~~Dl~G~G~S~~~~~~~~~~ 75 (276)
T TIGR02240 7 IDLDGQSIRTAVRPGKEGLTPLLIFNGIGANLELVFP------FI---EAL-DP-DLEVIAFDVPGVGGSSTPRHPYRFP 75 (276)
T ss_pred eccCCcEEEEEEecCCCCCCcEEEEeCCCcchHHHHH------HH---HHh-cc-CceEEEECCCCCCCCCCCCCcCcHH
Confidence 3447777666554333 45899999999999999832 22 223 34 7888888873332221111245555
Q ss_pred ceeeeCCCcce
Q psy17378 131 EHKVQTEDGYI 141 (181)
Q Consensus 131 e~avyDld~yI 141 (181)
+++ .|..+.+
T Consensus 76 ~~~-~~~~~~i 85 (276)
T TIGR02240 76 GLA-KLAARML 85 (276)
T ss_pred HHH-HHHHHHH
Confidence 544 3333444
No 47
>COG1647 Esterase/lipase [General function prediction only]
Probab=83.65 E-value=0.52 Score=39.91 Aligned_cols=37 Identities=16% Similarity=0.291 Sum_probs=31.6
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
++..|||.||...++... +-|+ ..|.++ ||+|...+.
T Consensus 14 G~~AVLllHGFTGt~~Dv------r~Lg---r~L~e~-GyTv~aP~y 50 (243)
T COG1647 14 GNRAVLLLHGFTGTPRDV------RMLG---RYLNEN-GYTVYAPRY 50 (243)
T ss_pred CCEEEEEEeccCCCcHHH------HHHH---HHHHHC-CceEecCCC
Confidence 457899999999999884 3477 888999 999999888
No 48
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=83.32 E-value=1.8 Score=38.65 Aligned_cols=63 Identities=17% Similarity=0.100 Sum_probs=48.3
Q ss_pred eeEEEEecCCCcEEEEEeeCCC---CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeecccee
Q psy17378 46 SEEHKVQTEDGYILTNFRMPNP---GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISF 116 (181)
Q Consensus 46 ~e~h~v~T~DGyiL~l~Ri~~~---~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~ 116 (181)
.....|.|.||-.+++--...+ .+|-|++.|||-.++.+=.. ..|. --+.++ ||+|-+.|+++
T Consensus 49 ~~re~v~~pdg~~~~ldw~~~p~~~~~P~vVl~HGL~G~s~s~y~----r~L~---~~~~~r-g~~~Vv~~~Rg 114 (345)
T COG0429 49 YTRERLETPDGGFIDLDWSEDPRAAKKPLVVLFHGLEGSSNSPYA----RGLM---RALSRR-GWLVVVFHFRG 114 (345)
T ss_pred cceEEEEcCCCCEEEEeeccCccccCCceEEEEeccCCCCcCHHH----HHHH---HHHHhc-CCeEEEEeccc
Confidence 3444799999999988776533 55679999999999887434 3566 667788 99999999944
No 49
>PLN03087 BODYGUARD 1 domain containing hydrolase; Provisional
Probab=82.61 E-value=1.3 Score=41.05 Aligned_cols=60 Identities=18% Similarity=0.150 Sum_probs=35.7
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecCccc-hhhhcCCcccee
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEI-ISFWGYPSEEHK 133 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~~~~-~~~w~ys~de~a 133 (181)
.++||+|+||+..++..|...- -..++ - ++.. +|.|+..+..++..+. .....|+++++.
T Consensus 200 ~k~~VVLlHG~~~s~~~W~~~~-~~~L~---~-~~~~-~yrVia~Dl~G~G~S~~p~~~~ytl~~~a 260 (481)
T PLN03087 200 AKEDVLFIHGFISSSAFWTETL-FPNFS---D-AAKS-TYRLFAVDLLGFGRSPKPADSLYTLREHL 260 (481)
T ss_pred CCCeEEEECCCCccHHHHHHHH-HHHHH---H-HhhC-CCEEEEECCCCCCCCcCCCCCcCCHHHHH
Confidence 3689999999999999985310 00111 1 2346 9999999984443221 112335555543
No 50
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=82.53 E-value=0.35 Score=38.88 Aligned_cols=40 Identities=5% Similarity=0.032 Sum_probs=29.2
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
+.|.|+++||...+...|... ..+. .++.+. ||-|...+.
T Consensus 12 ~~P~vv~lHG~~~~~~~~~~~---~~~~---~~a~~~-g~~Vv~Pd~ 51 (212)
T TIGR01840 12 PRALVLALHGCGQTASAYVID---WGWK---AAADRY-GFVLVAPEQ 51 (212)
T ss_pred CCCEEEEeCCCCCCHHHHhhh---cChH---HHHHhC-CeEEEecCC
Confidence 567899999999888876532 2355 555556 999988776
No 51
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=82.49 E-value=0.46 Score=34.70 Aligned_cols=34 Identities=15% Similarity=0.087 Sum_probs=28.8
Q ss_pred cEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 71 PIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 71 pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
||+++||...++..|. .++ ..|+++ ||-|+..+.
T Consensus 1 ~vv~~HG~~~~~~~~~------~~~---~~l~~~-G~~v~~~~~ 34 (145)
T PF12695_consen 1 VVVLLHGWGGSRRDYQ------PLA---EALAEQ-GYAVVAFDY 34 (145)
T ss_dssp EEEEECTTTTTTHHHH------HHH---HHHHHT-TEEEEEESC
T ss_pred CEEEECCCCCCHHHHH------HHH---HHHHHC-CCEEEEEec
Confidence 6999999999888763 466 778999 999999986
No 52
>PRK10566 esterase; Provisional
Probab=82.49 E-value=1.5 Score=35.40 Aligned_cols=37 Identities=14% Similarity=0.178 Sum_probs=28.6
Q ss_pred CCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccce
Q psy17378 69 GYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFIS 115 (181)
Q Consensus 69 ~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~ 115 (181)
.|.|+++||..+++..|. .++ -.|+++ ||.|...+..
T Consensus 27 ~p~vv~~HG~~~~~~~~~------~~~---~~l~~~-G~~v~~~d~~ 63 (249)
T PRK10566 27 LPTVFFYHGFTSSKLVYS------YFA---VALAQA-GFRVIMPDAP 63 (249)
T ss_pred CCEEEEeCCCCcccchHH------HHH---HHHHhC-CCEEEEecCC
Confidence 578999999877766552 255 667888 9999999883
No 53
>PF07819 PGAP1: PGAP1-like protein; InterPro: IPR012908 The sequences found in this family are similar to PGAP1 (Q765A7 from SWISSPROT). This is an endoplasmic reticulum membrane protein with a catalytic serine-containing motif that is conserved in a number of lipases. PGAP1 functions as a GPI inositol-deacylase; this deacylation is important for the efficient transport of GPI-anchored proteins from the endoplasmic reticulum to the Golgi body [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006505 GPI anchor metabolic process, 0006886 intracellular protein transport, 0031227 intrinsic to endoplasmic reticulum membrane
Probab=81.54 E-value=0.38 Score=39.89 Aligned_cols=19 Identities=26% Similarity=0.412 Sum_probs=15.5
Q ss_pred CCCcEEEeccccccccccc
Q psy17378 68 GGYPIIMFHGLSVSSDCWL 86 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~ 86 (181)
.|.||+++||...|...|.
T Consensus 3 ~g~pVlFIhG~~Gs~~q~r 21 (225)
T PF07819_consen 3 SGIPVLFIHGNAGSYKQVR 21 (225)
T ss_pred CCCEEEEECcCCCCHhHHH
Confidence 4789999999888877653
No 54
>PRK04057 30S ribosomal protein S3Ae; Validated
Probab=81.10 E-value=3 Score=34.58 Aligned_cols=58 Identities=17% Similarity=0.118 Sum_probs=36.2
Q ss_pred ceeEEEEEEeeCcchhhhccCCCcCCC-HHHHHhhcCCceeEEE-EecCCCcEEEEEeeC
Q psy17378 8 TKGKFSFAMVRGEVLEDMLNRRSFTTL-KPEIISFWGYPSEEHK-VQTEDGYILTNFRMP 65 (181)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~gy~~e~h~-v~T~DGyiL~l~Ri~ 65 (181)
.|+.|-..-|+|++--...+--++++. ...+++++-=-+|.+. |+|.|||.|.++=|-
T Consensus 57 ~K~~f~i~~V~G~~a~T~F~G~~lTrD~lrSlVrk~~S~Ie~~vdvkTkDGy~lRv~~i~ 116 (203)
T PRK04057 57 VKLYFKIDNVEGDKAYTRFIGHELTRDYLRSLVRRRTSKIDAIVDVTTKDGYKVRVKPVA 116 (203)
T ss_pred EEEEEEEEeeeCCEEEEEEeeeEecHHHHHhHhccCceeEEEEEEEEcCCCCEEEEEEEE
Confidence 356666666777762222221122211 4557888877777665 789999999998864
No 55
>COG4757 Predicted alpha/beta hydrolase [General function prediction only]
Probab=80.05 E-value=0.84 Score=39.14 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=56.5
Q ss_pred EEEecCCCcEEEEEeeCCCCCCc-EEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceecCccc---hhh
Q psy17378 49 HKVQTEDGYILTNFRMPNPGGYP-IIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEI---ISF 124 (181)
Q Consensus 49 h~v~T~DGyiL~l~Ri~~~~~~p-Vll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l~~~~---~~~ 124 (181)
-.+.-.|||.|..+|.|..++-+ -+++-|...-...|. +-++ -.++.+ ||+|-+.+.++...++ ...
T Consensus 8 ~~l~~~DG~~l~~~~~pA~~~~~g~~~va~a~Gv~~~fY-----RrfA---~~a~~~-Gf~Vlt~dyRG~g~S~p~~~~~ 78 (281)
T COG4757 8 AHLPAPDGYSLPGQRFPADGKASGRLVVAGATGVGQYFY-----RRFA---AAAAKA-GFEVLTFDYRGIGQSRPASLSG 78 (281)
T ss_pred cccccCCCccCccccccCCCCCCCcEEecccCCcchhHh-----HHHH---HHhhcc-CceEEEEecccccCCCcccccc
Confidence 34677899999999999774433 333333332222222 2355 566777 9999999885544332 333
Q ss_pred hcCCccceeeeCCCcceEEE
Q psy17378 125 WGYPSEEHKVQTEDGYILTN 144 (181)
Q Consensus 125 w~ys~de~avyDld~yIl~i 144 (181)
-.|.+.+.+..|.|+.+...
T Consensus 79 ~~~~~~DwA~~D~~aal~~~ 98 (281)
T COG4757 79 SQWRYLDWARLDFPAALAAL 98 (281)
T ss_pred CccchhhhhhcchHHHHHHH
Confidence 45788899999999987543
No 56
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=78.84 E-value=1 Score=35.90 Aligned_cols=38 Identities=18% Similarity=0.064 Sum_probs=28.1
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
.+|||+|+||+.+++..|... . -.| + +|.|+..+..+.
T Consensus 1 ~~p~vvllHG~~~~~~~w~~~------~---~~l--~-~~~vi~~D~~G~ 38 (242)
T PRK11126 1 GLPWLVFLHGLLGSGQDWQPV------G---EAL--P-DYPRLYIDLPGH 38 (242)
T ss_pred CCCEEEEECCCCCChHHHHHH------H---HHc--C-CCCEEEecCCCC
Confidence 367899999999999999542 2 123 4 799998888443
No 57
>PF02273 Acyl_transf_2: Acyl transferase; InterPro: IPR003157 LuxD proteins are bacterial acyl transferases. Together with an acyl-protein synthetase (LuxE) and reductase (LuxC), they form a multienzyme complex. This complex channels activated fatty acids into the aldehyde substrate for the luciferase-catalyzed bacterial bioluminescence reaction [, ]. ; GO: 0016746 transferase activity, transferring acyl groups, 0006631 fatty acid metabolic process; PDB: 1THT_B.
Probab=78.78 E-value=3 Score=36.12 Aligned_cols=58 Identities=14% Similarity=0.168 Sum_probs=40.1
Q ss_pred eEEEEecCCCcEEEEEeeCCC-----CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 47 EEHKVQTEDGYILTNFRMPNP-----GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 47 e~h~v~T~DGyiL~l~Ri~~~-----~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
-+|.+.-+||-.+.++.-+++ +.+.|++..|+....+.|. .|| ++|+.+ ||+|.=-+.
T Consensus 3 idhvi~~~~~~~I~vwet~P~~~~~~~~~tiliA~Gf~rrmdh~a------gLA---~YL~~N-GFhViRyDs 65 (294)
T PF02273_consen 3 IDHVIRLEDGRQIRVWETRPKNNEPKRNNTILIAPGFARRMDHFA------GLA---EYLSAN-GFHVIRYDS 65 (294)
T ss_dssp EEEEEEETTTEEEEEEEE---TTS---S-EEEEE-TT-GGGGGGH------HHH---HHHHTT-T--EEEE--
T ss_pred ccceeEcCCCCEEEEeccCCCCCCcccCCeEEEecchhHHHHHHH------HHH---HHHhhC-CeEEEeccc
Confidence 368899999999999997665 4578999999998888874 488 999999 999875444
No 58
>KOG1454|consensus
Probab=77.90 E-value=3.6 Score=36.07 Aligned_cols=38 Identities=26% Similarity=0.365 Sum_probs=27.3
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
.++||+++||+.+|+..|..+-+ .|+ .+. |+=||-.+.
T Consensus 57 ~~~pvlllHGF~~~~~~w~~~~~--~L~------~~~-~~~v~aiDl 94 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSFSWRRVVP--LLS------KAK-GLRVLAIDL 94 (326)
T ss_pred CCCcEEEeccccCCcccHhhhcc--ccc------ccc-ceEEEEEec
Confidence 68999999999999999976542 233 233 566665555
No 59
>PRK10673 acyl-CoA esterase; Provisional
Probab=77.85 E-value=1.8 Score=34.68 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=28.0
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeecccee
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISF 116 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~ 116 (181)
.++||+++||+.+++..|-. ++ -.| .+ +|.|...+..+
T Consensus 15 ~~~~iv~lhG~~~~~~~~~~------~~---~~l-~~-~~~vi~~D~~G 52 (255)
T PRK10673 15 NNSPIVLVHGLFGSLDNLGV------LA---RDL-VN-DHDIIQVDMRN 52 (255)
T ss_pred CCCCEEEECCCCCchhHHHH------HH---HHH-hh-CCeEEEECCCC
Confidence 67899999999999988732 23 233 34 78998888743
No 60
>KOG1838|consensus
Probab=76.88 E-value=3.5 Score=37.66 Aligned_cols=66 Identities=15% Similarity=0.041 Sum_probs=51.0
Q ss_pred CceeEEEEecCCCcEEEEEeeCCC---------CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 44 YPSEEHKVQTEDGYILTNFRMPNP---------GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 44 y~~e~h~v~T~DGyiL~l~Ri~~~---------~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
.+.+.-.++|+||-.+++--.-++ ..|.|+++||+..+|..=.. .+++ ..+.+. ||-|-..|.
T Consensus 91 ~~y~Reii~~~DGG~~~lDW~~~~~~~~~~~~~~~P~vvilpGltg~S~~~YV----r~lv---~~a~~~-G~r~VVfN~ 162 (409)
T KOG1838|consen 91 VEYTREIIKTSDGGTVTLDWVENPDSRCRTDDGTDPIVVILPGLTGGSHESYV----RHLV---HEAQRK-GYRVVVFNH 162 (409)
T ss_pred CcceeEEEEeCCCCEEEEeeccCcccccCCCCCCCcEEEEecCCCCCChhHHH----HHHH---HHHHhC-CcEEEEECC
Confidence 345666799999999999988432 34789999999988876222 4677 888888 999999999
Q ss_pred eec
Q psy17378 115 SFF 117 (181)
Q Consensus 115 ~~l 117 (181)
+++
T Consensus 163 RG~ 165 (409)
T KOG1838|consen 163 RGL 165 (409)
T ss_pred CCC
Confidence 554
No 61
>PF01015 Ribosomal_S3Ae: Ribosomal S3Ae family; InterPro: IPR001593 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities. One of these families consists of proteins that have from 220 to 250 amino acids and represents Rps1 (eukaryotic) and Rps3Ae (archaeal and eukaryotic).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_4 2XZM_4 3U5C_B 3U5G_B.
Probab=76.88 E-value=3.7 Score=33.74 Aligned_cols=58 Identities=26% Similarity=0.350 Sum_probs=31.2
Q ss_pred ceeEEEEEEeeCcchhhhccCCCcCC-CHHHHHhhcCCceeEEE-EecCCCcEEEEEeeC
Q psy17378 8 TKGKFSFAMVRGEVLEDMLNRRSFTT-LKPEIISFWGYPSEEHK-VQTEDGYILTNFRMP 65 (181)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~gy~~e~h~-v~T~DGyiL~l~Ri~ 65 (181)
.|+.|-..-|+|.+--...+--+.++ ....|+++|-=-+|.+. |.|.|||.|.++=+-
T Consensus 63 ~K~~f~i~~V~g~~a~T~F~G~elt~D~lrSlvrk~~s~Ie~~~dvkT~DGy~lRvf~i~ 122 (194)
T PF01015_consen 63 RKFKFKIEDVQGNNALTNFHGMELTRDKLRSLVRKWQSRIEAIVDVKTKDGYLLRVFCIA 122 (194)
T ss_dssp -EEEEEEEEEETTEEEEEEEEEE--HHHHHHC--TTC-EEEEEEEEEETTTEEEEEEEEE
T ss_pred EEEEEEEEeecCCEEEEEEcceecchhhhhcceeecceEEEEEEEEEcCCCcEEEEEEEE
Confidence 35556566666665211111111111 13557777776777664 889999999888763
No 62
>PRK10349 carboxylesterase BioH; Provisional
Probab=74.28 E-value=1.6 Score=35.35 Aligned_cols=36 Identities=8% Similarity=0.222 Sum_probs=26.0
Q ss_pred CcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeecccee
Q psy17378 70 YPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISF 116 (181)
Q Consensus 70 ~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~ 116 (181)
+||+|+||+.+++..|-. +. -.|+ . .|.|...+..+
T Consensus 14 ~~ivllHG~~~~~~~w~~------~~---~~L~-~-~~~vi~~Dl~G 49 (256)
T PRK10349 14 VHLVLLHGWGLNAEVWRC------ID---EELS-S-HFTLHLVDLPG 49 (256)
T ss_pred CeEEEECCCCCChhHHHH------HH---HHHh-c-CCEEEEecCCC
Confidence 469999999999999943 22 2333 4 69998888733
No 63
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=73.41 E-value=4 Score=34.22 Aligned_cols=40 Identities=10% Similarity=0.083 Sum_probs=29.3
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
+.|+|+|+||..++...|.... .+. .++++. ||-|...+.
T Consensus 41 ~~P~vvllHG~~~~~~~~~~~~---~~~---~la~~~-g~~Vv~Pd~ 80 (275)
T TIGR02821 41 PVPVLWYLSGLTCTHENFMIKA---GAQ---RFAAEH-GLALVAPDT 80 (275)
T ss_pred CCCEEEEccCCCCCccHHHhhh---HHH---HHHhhc-CcEEEEeCC
Confidence 4677899999999999985422 133 444566 999998885
No 64
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=72.70 E-value=2.2 Score=33.50 Aligned_cols=38 Identities=13% Similarity=0.072 Sum_probs=28.2
Q ss_pred CCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccce
Q psy17378 67 PGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFIS 115 (181)
Q Consensus 67 ~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~ 115 (181)
.++++|+|+||+.+++..|.. .. ..| .. ||.|+..+..
T Consensus 11 ~~~~~iv~lhG~~~~~~~~~~------~~---~~l-~~-~~~vi~~D~~ 48 (257)
T TIGR03611 11 ADAPVVVLSSGLGGSGSYWAP------QL---DVL-TQ-RFHVVTYDHR 48 (257)
T ss_pred CCCCEEEEEcCCCcchhHHHH------HH---HHH-Hh-ccEEEEEcCC
Confidence 367889999999999988853 12 223 35 8999988873
No 65
>PRK10115 protease 2; Provisional
Probab=72.61 E-value=7.9 Score=37.37 Aligned_cols=66 Identities=11% Similarity=-0.133 Sum_probs=45.9
Q ss_pred hcCCceeEEEEecCCCcEEEEEee--CC----CCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 41 FWGYPSEEHKVQTEDGYILTNFRM--PN----PGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 41 ~~gy~~e~h~v~T~DGyiL~l~Ri--~~----~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
...|.+|...+++.||..+-++=+ |. ++.|.|++.||-...+.....+. .. -.|+++ ||=|-+.|.
T Consensus 411 ~~~~~~e~v~~~s~DG~~Ip~~l~~~~~~~~~~~~P~ll~~hGg~~~~~~p~f~~----~~---~~l~~r-G~~v~~~n~ 482 (686)
T PRK10115 411 AANYRSEHLWITARDGVEVPVSLVYHRKHFRKGHNPLLVYGYGSYGASIDADFSF----SR---LSLLDR-GFVYAIVHV 482 (686)
T ss_pred ccccEEEEEEEECCCCCEEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCCCccH----HH---HHHHHC-CcEEEEEEc
Confidence 347899999999999998875333 21 24566888999777765533211 11 346678 999999998
No 66
>PLN00021 chlorophyllase
Probab=72.11 E-value=7.1 Score=34.00 Aligned_cols=63 Identities=11% Similarity=0.030 Sum_probs=41.8
Q ss_pred CCceeEEEEecC----CCcEEEEEeeCCC-CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccce
Q psy17378 43 GYPSEEHKVQTE----DGYILTNFRMPNP-GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFIS 115 (181)
Q Consensus 43 gy~~e~h~v~T~----DGyiL~l~Ri~~~-~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~ 115 (181)
-|+++.-.|... -+..+.+++=... +.|+|++.||...+...|. .++ -.|+.. ||-|+..+..
T Consensus 21 ~~~~~~~~~~~~~~~~~~~p~~v~~P~~~g~~PvVv~lHG~~~~~~~y~------~l~---~~Las~-G~~VvapD~~ 88 (313)
T PLN00021 21 KFPVELITVDESSRPSPPKPLLVATPSEAGTYPVLLFLHGYLLYNSFYS------QLL---QHIASH-GFIVVAPQLY 88 (313)
T ss_pred CceeEEEEecCCCcCCCCceEEEEeCCCCCCCCEEEEECCCCCCcccHH------HHH---HHHHhC-CCEEEEecCC
Confidence 366666665542 4555666653222 4577899999988766552 355 567889 9999988863
No 67
>PLN02965 Probable pheophorbidase
Probab=72.07 E-value=1.8 Score=35.31 Aligned_cols=37 Identities=14% Similarity=0.209 Sum_probs=28.1
Q ss_pred cEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 71 PIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 71 pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
+|+|+||+..++..|.. +. -.|+.. ||.|...+..+.
T Consensus 5 ~vvllHG~~~~~~~w~~------~~---~~L~~~-~~~via~Dl~G~ 41 (255)
T PLN02965 5 HFVFVHGASHGAWCWYK------LA---TLLDAA-GFKSTCVDLTGA 41 (255)
T ss_pred EEEEECCCCCCcCcHHH------HH---HHHhhC-CceEEEecCCcC
Confidence 48999999999988843 22 345677 999999998444
No 68
>COG1890 RPS1A Ribosomal protein S3AE [Translation, ribosomal structure and biogenesis]
Probab=69.07 E-value=8 Score=32.31 Aligned_cols=30 Identities=23% Similarity=0.295 Sum_probs=22.3
Q ss_pred HHHHHhhcCCceeE-EEEecCCCcEEEEEee
Q psy17378 35 KPEIISFWGYPSEE-HKVQTEDGYILTNFRM 64 (181)
Q Consensus 35 ~~~~i~~~gy~~e~-h~v~T~DGyiL~l~Ri 64 (181)
...+++++-=.++. ..|.|.|||.+.++=+
T Consensus 93 iRslVRR~~SrIdai~dVkTkDGy~~RV~~~ 123 (214)
T COG1890 93 IRSLVRRRTSRIDAIVDVKTKDGYVLRVKAM 123 (214)
T ss_pred HHHHHhcccceeeeEEEEEecCCcEEEEEEE
Confidence 45567777666654 5699999999988765
No 69
>PF04270 Strep_his_triad: Streptococcal histidine triad protein ; InterPro: IPR006270 This entry represents a repeated sequence region that includes a His-X-X-His-X-His (histidine triad) motif, which is found in family of Streptococcal proteins. Members of the family are suggested to cleave human complement component 3, and family member PhpA has been shown in vaccine studies to be a protective antigen in mice []. ; PDB: 2CS7_C.
Probab=67.82 E-value=1.3 Score=29.11 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=17.9
Q ss_pred ecCCCcEEEEEeeCCCCCCcEEEecccccccccccc
Q psy17378 52 QTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLL 87 (181)
Q Consensus 52 ~T~DGyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~ 87 (181)
+|+|||+..-..|-....--.+.-|| +..-|+.
T Consensus 2 ~t~DGyvFdp~dI~~~~~~gy~vpHg---dH~HyI~ 34 (53)
T PF04270_consen 2 TTSDGYVFDPADIISETGDGYVVPHG---DHFHYIP 34 (53)
T ss_dssp B-TTS-B--GGG--EE-SSEEEEEET---TEEEEEE
T ss_pred cCCCCceeCHHHccccCCCeEEeeCC---CcccCCc
Confidence 69999999888876665666777886 4444443
No 70
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=65.72 E-value=3.3 Score=31.96 Aligned_cols=38 Identities=5% Similarity=0.120 Sum_probs=27.6
Q ss_pred CCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 69 GYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 69 ~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
++||+++||+.+++..|.. +. ..|+ . +|.|+..+..+.
T Consensus 4 ~~~iv~~HG~~~~~~~~~~------~~---~~l~-~-~~~vi~~d~~G~ 41 (245)
T TIGR01738 4 NVHLVLIHGWGMNAEVFRC------LD---EELS-A-HFTLHLVDLPGH 41 (245)
T ss_pred CceEEEEcCCCCchhhHHH------HH---Hhhc-c-CeEEEEecCCcC
Confidence 4789999999999998843 23 3343 4 799988887443
No 71
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=65.24 E-value=6.7 Score=33.45 Aligned_cols=37 Identities=19% Similarity=0.390 Sum_probs=26.3
Q ss_pred CCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 67 PGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 67 ~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
+.++||+|+||..++...|.... -.| .. +|.|-..+.
T Consensus 129 ~~~~~vl~~HG~~~~~~~~~~~~---------~~l-~~-~~~v~~~d~ 165 (371)
T PRK14875 129 GDGTPVVLIHGFGGDLNNWLFNH---------AAL-AA-GRPVIALDL 165 (371)
T ss_pred CCCCeEEEECCCCCccchHHHHH---------HHH-hc-CCEEEEEcC
Confidence 45789999999999999886422 122 23 688777776
No 72
>PRK11071 esterase YqiA; Provisional
Probab=64.91 E-value=3.6 Score=32.82 Aligned_cols=18 Identities=17% Similarity=0.290 Sum_probs=16.0
Q ss_pred CcEEEecccccccccccc
Q psy17378 70 YPIIMFHGLSVSSDCWLL 87 (181)
Q Consensus 70 ~pVll~HGl~~ss~~~~~ 87 (181)
|||+++||+.+|+.+|-.
T Consensus 2 p~illlHGf~ss~~~~~~ 19 (190)
T PRK11071 2 STLLYLHGFNSSPRSAKA 19 (190)
T ss_pred CeEEEECCCCCCcchHHH
Confidence 689999999999999864
No 73
>PRK07581 hypothetical protein; Validated
Probab=64.09 E-value=9.2 Score=32.66 Aligned_cols=41 Identities=7% Similarity=-0.199 Sum_probs=23.5
Q ss_pred CCcEEEeccccccccccccc-CCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 69 GYPIIMFHGLSVSSDCWLLR-NPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 69 ~~pVll~HGl~~ss~~~~~~-~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
.++|+|.||...++..|-.. ++.. .|+.. +|-|-..+..+.
T Consensus 41 ~~~vll~~~~~~~~~~~~~~~~~~~-------~l~~~-~~~vi~~D~~G~ 82 (339)
T PRK07581 41 DNAILYPTWYSGTHQDNEWLIGPGR-------ALDPE-KYFIIIPNMFGN 82 (339)
T ss_pred CCEEEEeCCCCCCcccchhhccCCC-------ccCcC-ceEEEEecCCCC
Confidence 35577878877676665221 1111 23355 788888887443
No 74
>cd00707 Pancreat_lipase_like Pancreatic lipase-like enzymes. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=62.82 E-value=4.5 Score=34.33 Aligned_cols=41 Identities=17% Similarity=0.306 Sum_probs=28.5
Q ss_pred CCCCcEEEeccccccc-ccccccCCCCCCCcchhhhhcCCCceeeeccce
Q psy17378 67 PGGYPIIMFHGLSVSS-DCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFIS 115 (181)
Q Consensus 67 ~~~~pVll~HGl~~ss-~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~ 115 (181)
+.+|+|+++||...+. ..|... ++ +.+|+.. +|.|...++.
T Consensus 34 ~~~p~vilIHG~~~~~~~~~~~~-----l~--~~ll~~~-~~nVi~vD~~ 75 (275)
T cd00707 34 PSRPTRFIIHGWTSSGEESWISD-----LR--KAYLSRG-DYNVIVVDWG 75 (275)
T ss_pred CCCCcEEEEcCCCCCCCCcHHHH-----HH--HHHHhcC-CCEEEEEECc
Confidence 3688999999998887 566431 22 1344556 8999988873
No 75
>PLN02442 S-formylglutathione hydrolase
Probab=61.78 E-value=9.6 Score=32.22 Aligned_cols=40 Identities=5% Similarity=0.017 Sum_probs=30.6
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
+.|.|+++||..++...|.... .+. ..++.. ||-|...+.
T Consensus 46 ~~Pvv~~lHG~~~~~~~~~~~~---~~~---~~~~~~-g~~Vv~pd~ 85 (283)
T PLN02442 46 KVPVLYWLSGLTCTDENFIQKS---GAQ---RAAAAR-GIALVAPDT 85 (283)
T ss_pred CCCEEEEecCCCcChHHHHHhh---hHH---HHHhhc-CeEEEecCC
Confidence 5677889999998888886532 345 667777 999988875
No 76
>TIGR02778 ligD_pol DNA polymerase LigD, polymerase domain. DNA repair of double-stranded breaks by non-homologous end joining (NHEJ) is accomplished by a two-protein system that is present in a minority of prokaryotes. One component is the Ku protein (see TIGR02772), which binds DNA ends. The other is a DNA ligase, a protein that is a multidomain polypeptide in most of those bacteria that have NHEJ, a permuted polypeptide in Mycobacterium tuberculosis and a few other species, and the product of tandem genes in some other bacteria. This model represents the polymerase domain.
Probab=58.06 E-value=8.3 Score=32.90 Aligned_cols=80 Identities=11% Similarity=0.138 Sum_probs=47.8
Q ss_pred CCHHHHHhhcCCceeEEEEecCCCcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCce-eee
Q psy17378 33 TLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLD-VFE 111 (181)
Q Consensus 33 ~~~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyD-VWl 111 (181)
-++.|++++|- .+-.+-..---|..|+|.|.|++-..+-|+|-......-.|+..-+-.+-.+++|++++. -=. ||+
T Consensus 16 ~TK~dl~~YY~-~va~~mLP~l~~RPltl~R~P~Gi~~~~FfqK~~~~~~P~wv~t~~~~~~~~~~y~~v~d-~~~L~~l 93 (245)
T TIGR02778 16 ITKLDLADYYA-AVAPFMLPHLRGRPLSLLRCPDGIGGECFFQKHLPQGAPPFVVSAEVEESDGETYLVIND-AEGLLWL 93 (245)
T ss_pred CcHHHHHHHHH-HHHHHHHHHHcCCceEeEECCCCCCCCceeecCCCCCCCCceEEEeeccCCCceeEEeCC-HHHHHHH
Confidence 34566665542 111122223348899999999996667788988877777887532111111113777655 333 888
Q ss_pred ccc
Q psy17378 112 GFI 114 (181)
Q Consensus 112 ~n~ 114 (181)
.|.
T Consensus 94 an~ 96 (245)
T TIGR02778 94 VQQ 96 (245)
T ss_pred HHh
Confidence 887
No 77
>KOG2382|consensus
Probab=57.81 E-value=5.2 Score=35.36 Aligned_cols=43 Identities=23% Similarity=0.270 Sum_probs=31.4
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc--eecCc
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI--SFFQP 119 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~--~~l~~ 119 (181)
+.||++++||++.|...|-.-+ +.|+ - .. |-||.+.+. ++.+|
T Consensus 51 ~~Pp~i~lHGl~GS~~Nw~sv~--k~Ls---~---~l-~~~v~~vd~RnHG~Sp 95 (315)
T KOG2382|consen 51 RAPPAIILHGLLGSKENWRSVA--KNLS---R---KL-GRDVYAVDVRNHGSSP 95 (315)
T ss_pred CCCceEEecccccCCCCHHHHH--HHhc---c---cc-cCceEEEecccCCCCc
Confidence 7899999999999999997654 3344 2 22 668888877 44444
No 78
>PF12715 Abhydrolase_7: Abhydrolase family; PDB: 3NUZ_C 3G8Y_A.
Probab=56.15 E-value=10 Score=34.46 Aligned_cols=72 Identities=18% Similarity=0.200 Sum_probs=41.8
Q ss_pred HhhcCCceeEEEEecCCCcEEEEEe-eCCC---CCCcEEEecccccccccccc------------cCCCCCCCcchhhhh
Q psy17378 39 ISFWGYPSEEHKVQTEDGYILTNFR-MPNP---GGYPIIMFHGLSVSSDCWLL------------RNPKEDFGKSDFIVK 102 (181)
Q Consensus 39 i~~~gy~~e~h~v~T~DGyiL~l~R-i~~~---~~~pVll~HGl~~ss~~~~~------------~~~~~sl~~~~~~La 102 (181)
.+.-||..|...+.|.+|.-...+= +|.+ +-|.||++||=......-+. ..++...+ ..||
T Consensus 81 eqrdGY~~EKv~f~~~p~~~vpaylLvPd~~~~p~PAVL~lHgHg~~Ke~~~g~~gv~~~~~~~~~~~~~~~g---~~LA 157 (390)
T PF12715_consen 81 EQRDGYTREKVEFNTTPGSRVPAYLLVPDGAKGPFPAVLCLHGHGGGKEKMAGEDGVSPDLKDDYDDPKQDYG---DQLA 157 (390)
T ss_dssp EEETTEEEEEEEE--STTB-EEEEEEEETT--S-EEEEEEE--TT--HHHHCT---SSGCG--STTSTTT-HH---HHHH
T ss_pred EecCCeEEEEEEEEccCCeeEEEEEEecCCCCCCCCEEEEeCCCCCCcccccCCcccccccchhhccccccHH---HHHH
Confidence 4677999999999999998888774 4654 34568999986554322111 11233456 6788
Q ss_pred cCCCceeeeccc
Q psy17378 103 EGSLLDVFEGFI 114 (181)
Q Consensus 103 d~~GyDVWl~n~ 114 (181)
.+ ||=|-..+.
T Consensus 158 k~-GYVvla~D~ 168 (390)
T PF12715_consen 158 KR-GYVVLAPDA 168 (390)
T ss_dssp TT-TSEEEEE--
T ss_pred hC-CCEEEEEcc
Confidence 99 999887776
No 79
>PF00561 Abhydrolase_1: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR000073 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents fold-1 of alpha/beta hydrolase.; PDB: 2VAT_E 2VAX_C 2VAV_H 2PSJ_A 2PSH_B 2PSE_A 2PSF_A 2PSD_A 2EDA_A 1CIJ_A ....
Probab=55.71 E-value=0.73 Score=35.78 Aligned_cols=64 Identities=14% Similarity=0.036 Sum_probs=41.1
Q ss_pred ceeeeccceecCccchhhhcCCccceeeeCCCcceEEEEecCCCCCCcEEEEeecccccc---cceecCCC
Q psy17378 107 LDVFEGFISFFQPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSD---CWLLRYEV 174 (181)
Q Consensus 107 yDVWl~n~~~l~~~~~~~w~ys~de~avyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~---~w~~~g~~ 174 (181)
||||+.|..+..-+... |+..++++...|....+..+.... +...+...|+|.|+. .|....|+
T Consensus 1 f~vi~~d~rG~g~S~~~-~~~~~~~~~~~~~~~~~~~~~~~l---~~~~~~~vG~S~Gg~~~~~~a~~~p~ 67 (230)
T PF00561_consen 1 FDVILFDLRGFGYSSPH-WDPDFPDYTTDDLAADLEALREAL---GIKKINLVGHSMGGMLALEYAAQYPE 67 (230)
T ss_dssp EEEEEEECTTSTTSSSC-CGSGSCTHCHHHHHHHHHHHHHHH---TTSSEEEEEETHHHHHHHHHHHHSGG
T ss_pred CEEEEEeCCCCCCCCCC-ccCCcccccHHHHHHHHHHHHHHh---CCCCeEEEEECCChHHHHHHHHHCch
Confidence 89999998554433322 677788888888877776555432 222266779999887 44444444
No 80
>cd04866 LigD_Pol_like_3 LigD_Pol_like_3: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 3. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated repair DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=55.31 E-value=9.3 Score=32.16 Aligned_cols=55 Identities=16% Similarity=0.094 Sum_probs=39.7
Q ss_pred CcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCce-eeeccc
Q psy17378 56 GYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLD-VFEGFI 114 (181)
Q Consensus 56 GyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyD-VWl~n~ 114 (181)
|..|+|.|.|++-..+-|+|-..-...-.|+..-+-.... |++.+. -=. |||.|.
T Consensus 21 ~RPlsl~R~P~Gi~~~~FfQK~~p~~~P~wv~t~~v~~~~---yl~v~d-~~~L~wlan~ 76 (223)
T cd04866 21 DRALTVIRYPHGIRGESFFQKNKPDYAPEFVETVMLDEIN---YIVCNN-LETLVWLGNQ 76 (223)
T ss_pred CCCeeeEECCCCCCCCceeeCCCCCCCCCceEEEeeCCcC---eEEeCC-HHHHHHHHHh
Confidence 6779999999997777888888877778888643223334 776655 333 888887
No 81
>TIGR01392 homoserO_Ac_trn homoserine O-acetyltransferase. This family describes homoserine-O-acetyltransferase, an enzyme of methionine biosynthesis. This model has been rebuilt to identify sequences more broadly, including a number of sequences suggested to be homoserine O-acetyltransferase based on proximity to other Met biosynthesis genes.
Probab=55.17 E-value=23 Score=30.59 Aligned_cols=42 Identities=10% Similarity=0.028 Sum_probs=26.0
Q ss_pred CCCcEEEeccccccccc-----------ccccCCCCCCCcchhhhhcCCCceeeecccee
Q psy17378 68 GGYPIIMFHGLSVSSDC-----------WLLRNPKEDFGKSDFIVKEGSLLDVFEGFISF 116 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~-----------~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~ 116 (181)
.++||+|+||+..++.. |-..- ..+.+ |..+ +|.|-..+..+
T Consensus 30 ~~~~vll~Hg~~~~~~~~~~~~~~~~~~w~~~~-~~~~~-----l~~~-~~~vi~~D~~G 82 (351)
T TIGR01392 30 RSNAVLVCHALTGDAHVAGYHDDGDPGWWDDLI-GPGRA-----IDTD-RYFVVCSNVLG 82 (351)
T ss_pred CCCEEEEcCCcCcchhhcccCCCCCCCchhhcc-CCCCC-----cCCC-ceEEEEecCCC
Confidence 46789999999998743 32210 01112 3345 89988888754
No 82
>KOG4409|consensus
Probab=55.04 E-value=18 Score=32.62 Aligned_cols=56 Identities=18% Similarity=0.344 Sum_probs=39.7
Q ss_pred HHhhcCCceeEEEEecCCCcEEEEEeeCC--CCCCcEEEecccccccccccccCCCCCCC
Q psy17378 38 IISFWGYPSEEHKVQTEDGYILTNFRMPN--PGGYPIIMFHGLSVSSDCWLLRNPKEDFG 95 (181)
Q Consensus 38 ~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~--~~~~pVll~HGl~~ss~~~~~~~~~~sl~ 95 (181)
+.+..+-+.+.-.|.+.++-..-.....+ ..++|++|+||..++.+.|..|- .+|+
T Consensus 57 il~~~~v~~~~~~v~i~~~~~iw~~~~~~~~~~~~plVliHGyGAg~g~f~~Nf--~~La 114 (365)
T KOG4409|consen 57 ILSSVPVPYSKKYVRIPNGIEIWTITVSNESANKTPLVLIHGYGAGLGLFFRNF--DDLA 114 (365)
T ss_pred hhhhcCCCcceeeeecCCCceeEEEeecccccCCCcEEEEeccchhHHHHHHhh--hhhh
Confidence 45566666677777777554443333332 37899999999999999999987 3466
No 83
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=55.02 E-value=9.9 Score=33.16 Aligned_cols=38 Identities=24% Similarity=0.444 Sum_probs=27.7
Q ss_pred CCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 69 GYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 69 ~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
++||+|+||+.+++..|... ++ . |+ . +|.|...+..++
T Consensus 88 gp~lvllHG~~~~~~~w~~~-----~~---~-L~-~-~~~via~Dl~G~ 125 (360)
T PLN02679 88 GPPVLLVHGFGASIPHWRRN-----IG---V-LA-K-NYTVYAIDLLGF 125 (360)
T ss_pred CCeEEEECCCCCCHHHHHHH-----HH---H-Hh-c-CCEEEEECCCCC
Confidence 48999999999999999542 22 2 33 4 789988887443
No 84
>PRK00175 metX homoserine O-acetyltransferase; Provisional
Probab=54.83 E-value=11 Score=33.19 Aligned_cols=35 Identities=14% Similarity=0.265 Sum_probs=23.4
Q ss_pred EecCCCcEEEEEee----CC---C-CCCcEEEecccccccccc
Q psy17378 51 VQTEDGYILTNFRM----PN---P-GGYPIIMFHGLSVSSDCW 85 (181)
Q Consensus 51 v~T~DGyiL~l~Ri----~~---~-~~~pVll~HGl~~ss~~~ 85 (181)
+++++|-.+.=.|+ -. + .+|||+|+||+.+++..|
T Consensus 22 ~~~~~g~~~~~~~~~y~~~G~~~~~~~p~vvl~HG~~~~~~~~ 64 (379)
T PRK00175 22 LPLESGAVLPPVELAYETYGTLNADRSNAVLICHALTGDHHVA 64 (379)
T ss_pred eeccCCCCcCCceEEEEeccccCCCCCCEEEEeCCcCCchhhc
Confidence 45566666653222 22 1 368899999999999864
No 85
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=52.31 E-value=32 Score=30.75 Aligned_cols=39 Identities=15% Similarity=0.192 Sum_probs=28.5
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
+++||+|+||...++..|... .. . |+ + +|.|+..+..+.
T Consensus 104 ~~p~vvllHG~~~~~~~~~~~-----~~---~-L~-~-~~~vi~~D~rG~ 142 (402)
T PLN02894 104 DAPTLVMVHGYGASQGFFFRN-----FD---A-LA-S-RFRVIAIDQLGW 142 (402)
T ss_pred CCCEEEEECCCCcchhHHHHH-----HH---H-HH-h-CCEEEEECCCCC
Confidence 678999999999888888542 22 3 33 4 799999988443
No 86
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. This CD includes a novel, yet uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=52.28 E-value=25 Score=24.01 Aligned_cols=37 Identities=22% Similarity=0.293 Sum_probs=28.6
Q ss_pred cCCCHHHHHhhcCCceeE-EEEecCCCcEEEEEeeCCC
Q psy17378 31 FTTLKPEIISFWGYPSEE-HKVQTEDGYILTNFRMPNP 67 (181)
Q Consensus 31 ~~~~~~~~i~~~gy~~e~-h~v~T~DGyiL~l~Ri~~~ 67 (181)
....+...+...|..+-. ...+|.|||.|..|.+...
T Consensus 14 LFa~iag~L~~~~LnI~~A~i~tt~dG~~LDtF~V~d~ 51 (68)
T cd04928 14 LLSQLSSLLGDLGLNIAEAHAFSTDDGLALDIFVVTGW 51 (68)
T ss_pred hHHHHHHHHHHCCCceEEEEEEEcCCCeEEEEEEEecC
Confidence 334466778999999866 6667999999999998643
No 87
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=50.44 E-value=26 Score=29.22 Aligned_cols=57 Identities=11% Similarity=-0.031 Sum_probs=31.1
Q ss_pred CCCcEEE-EEeeCCC-CCCcEEEecccccc-cccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 54 EDGYILT-NFRMPNP-GGYPIIMFHGLSVS-SDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 54 ~DGyiL~-l~Ri~~~-~~~pVll~HGl~~s-s~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
.||-.|. ..-.|.. ++++|++.||-... ...|.. -..++ -.|+++ ||.|...+..+.
T Consensus 9 ~~~~~l~g~~~~p~~~~~~~vv~i~gg~~~~~g~~~~---~~~la---~~l~~~-G~~v~~~Dl~G~ 68 (274)
T TIGR03100 9 CEGETLVGVLHIPGASHTTGVLIVVGGPQYRVGSHRQ---FVLLA---RRLAEA-GFPVLRFDYRGM 68 (274)
T ss_pred cCCcEEEEEEEcCCCCCCCeEEEEeCCccccCCchhH---HHHHH---HHHHHC-CCEEEEeCCCCC
Confidence 3343333 3333543 45567766664322 222211 12366 667889 999999998443
No 88
>COG0596 MhpC Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]
Probab=50.31 E-value=11 Score=28.37 Aligned_cols=39 Identities=21% Similarity=0.361 Sum_probs=26.4
Q ss_pred CCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccce
Q psy17378 69 GYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFIS 115 (181)
Q Consensus 69 ~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~ 115 (181)
+++|++.||...++..|.... . .......-|+|++.+..
T Consensus 21 ~~~i~~~hg~~~~~~~~~~~~--~------~~~~~~~~~~~~~~d~~ 59 (282)
T COG0596 21 GPPLVLLHGFPGSSSVWRPVF--K------VLPALAARYRVIAPDLR 59 (282)
T ss_pred CCeEEEeCCCCCchhhhHHHH--H------HhhccccceEEEEeccc
Confidence 558999999999999997611 1 11122202899998873
No 89
>cd04865 LigD_Pol_like_2 LigD_Pol_like_2: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 2. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=49.44 E-value=18 Score=30.54 Aligned_cols=55 Identities=9% Similarity=0.093 Sum_probs=39.0
Q ss_pred CcEEEEEeeCCCCCCcEEEecccccccccccccCC-----CCCCCcchhhhhcCCCce-eeeccc
Q psy17378 56 GYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNP-----KEDFGKSDFIVKEGSLLD-VFEGFI 114 (181)
Q Consensus 56 GyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~-----~~sl~~~~~~Lad~~GyD-VWl~n~ 114 (181)
|..|+|.|.|.+-..+-|+|-......-.|+..-+ +.... |++.+. -=. ||+.|.
T Consensus 21 ~RPltl~R~P~Gi~~~~FfqK~~~~~~P~wv~t~~~~~~~g~~~~---y~~v~d-~~~L~~lan~ 81 (228)
T cd04865 21 DRPLVLKRYPDGIDGKGFYQKDVPAGAPDWLRTVRITSESGRTIN---YLIVQD-PAALLWLANL 81 (228)
T ss_pred CCceEeEECCCCCCCCceeeCCCCCCCCCceEEEeeecCCCCccc---eEEECC-HHHHHHHHHh
Confidence 67899999999977778999888777778875311 12234 766655 333 888887
No 90
>cd04864 LigD_Pol_like_1 LigD_Pol_like_1: Polymerase (Pol) domain of mostly bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD, subgroup 1. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The Pol domains of PaeLigD and Mycobacterium tuberculosis (Mt)LigD are stimulated by manganese, are error-prone, and prefer adding rNTPs to dNTPs in vitro; however PaeLigD and MtLigD belong to other subgroups, proteins in this subgroup await functional characterization.
Probab=49.20 E-value=13 Score=31.35 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=38.8
Q ss_pred CcEEEEEeeCCCCCCcEEEecccccccccccccCCC------CCCCcchhhhhcCCCce-eeeccc
Q psy17378 56 GYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPK------EDFGKSDFIVKEGSLLD-VFEGFI 114 (181)
Q Consensus 56 GyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~------~sl~~~~~~Lad~~GyD-VWl~n~ 114 (181)
|..|+|.|.|++-..+-|+|-..-...-.|+..-+- .... |++.+. -=. ||+.|.
T Consensus 21 ~RPltl~R~P~Gi~~~~FfqK~~p~~~P~wv~t~~i~~~~~~~~~~---y~~v~d-~~~L~wlan~ 82 (228)
T cd04864 21 GRPITLERFPDGIGKPGFYQKEAPEHFPDWIERVEVPKRGDGGSVH---HVLCDD-AATLVYLADQ 82 (228)
T ss_pred CCceEeEECCCCCCCCceeecCCCCCCCCceEEEEeecCCCCCccc---eEEeCC-HHHHHHHHHc
Confidence 678999999999666779998887777788753211 2233 776655 333 888887
No 91
>PF06500 DUF1100: Alpha/beta hydrolase of unknown function (DUF1100); InterPro: IPR010520 Proteins in this entry display esterase activity toward pNP-butyrate []. This entry also includes 2,6-dihydropseudooxynicotine hydrolase which has a role in nicotine catabolism by cleaving a C-C bond in 2,6-dihydroxypseudooxyicotine [, ].; PDB: 3OUR_A 3MVE_B 2JBW_C.
Probab=48.63 E-value=37 Score=31.11 Aligned_cols=69 Identities=14% Similarity=0.097 Sum_probs=41.8
Q ss_pred HHHhhcCCceeEEEEecCCCcEEEEEeeCCCC--CCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 37 EIISFWGYPSEEHKVQTEDGYILTNFRMPNPG--GYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 37 ~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~--~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
+.++..+|++|+..|.-+++-+-...|+|.+. .|.|+++-|+=+-...+.... . -.++.. |+-+-..+.
T Consensus 156 ~Aa~l~~~~i~~v~iP~eg~~I~g~LhlP~~~~p~P~VIv~gGlDs~qeD~~~l~-----~---~~l~~r-GiA~LtvDm 226 (411)
T PF06500_consen 156 KAAKLSDYPIEEVEIPFEGKTIPGYLHLPSGEKPYPTVIVCGGLDSLQEDLYRLF-----R---DYLAPR-GIAMLTVDM 226 (411)
T ss_dssp HHHHHSSSEEEEEEEEETTCEEEEEEEESSSSS-EEEEEEE--TTS-GGGGHHHH-----H---CCCHHC-T-EEEEE--
T ss_pred HHHHhCCCCcEEEEEeeCCcEEEEEEEcCCCCCCCCEEEEeCCcchhHHHHHHHH-----H---HHHHhC-CCEEEEEcc
Confidence 35688999999999999999999999999863 334555555543333321110 0 124566 888776666
No 92
>cd04862 PaeLigD_Pol_like PaeLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The PaeLigD Pol domain in vitro, in a manganese-dependent fashion, catalyzes templated extensions of 5'-overhang duplex DNA, and nontemplated single-nu
Probab=48.02 E-value=20 Score=30.23 Aligned_cols=55 Identities=11% Similarity=-0.060 Sum_probs=39.0
Q ss_pred CcEEEEEeeCCCCCCcEEEecccccccccccccCC----CCCCCcchhhhhcCCCce-eeeccc
Q psy17378 56 GYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNP----KEDFGKSDFIVKEGSLLD-VFEGFI 114 (181)
Q Consensus 56 GyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~----~~sl~~~~~~Lad~~GyD-VWl~n~ 114 (181)
|..|+|.|.|++-..+-|+|-......-.|+..-+ +.... |++.+. -=. |||.|.
T Consensus 21 ~RPltl~R~P~Gi~~~~FfqK~~~~~~P~wv~t~~~~~~~~~~~---y~~v~d-~~~Lvwlan~ 80 (227)
T cd04862 21 GRPLSLVRCPDGIGGECFFQKHAGAGLPPGVEQLEIEESGGTEP---YLYIED-AEGLLALVQM 80 (227)
T ss_pred CCceEeEECCCCCCCCceeecCCCCCCCCceEEEeeccCCCccc---eEEeCC-HHHHHHHHHh
Confidence 67899999999966677899888888888875321 22233 666655 333 888887
No 93
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) have been described, however, the ACR-like sequences in this CD are distinct from those characterized. This CD includes the Oryza sativa ACR-like protein (Os05g0113000) encoded on chromosome 5 and the Arabidopsis thaliana predicted gene product, At2g39570. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=47.91 E-value=32 Score=23.38 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=31.2
Q ss_pred CCcCCCHHHHHhhcCCceeEEEEe-cCCCcEEEEEeeCCC
Q psy17378 29 RSFTTLKPEIISFWGYPSEEHKVQ-TEDGYILTNFRMPNP 67 (181)
Q Consensus 29 ~~~~~~~~~~i~~~gy~~e~h~v~-T~DGyiL~l~Ri~~~ 67 (181)
+.....+...+..+|..+..-++. |.||+.+..|.+..+
T Consensus 11 ~gLfa~i~~~l~~~~l~I~~A~I~Tt~~~~v~D~F~V~d~ 50 (76)
T cd04927 11 KGLLHDVTEVLYELELTIERVKVSTTPDGRVLDLFFITDA 50 (76)
T ss_pred CCHHHHHHHHHHHCCCeEEEEEEEECCCCEEEEEEEEeCC
Confidence 334445677899999999887777 599999999999755
No 94
>PF06441 EHN: Epoxide hydrolase N terminus; InterPro: IPR010497 This entry represents the N-terminal region of the eukaryotic epoxide hydrolase protein. Epoxide hydrolases (3.3.2.3 from EC) comprise a group of functionally related enzymes that catalyse the addition of water to oxirane compounds (epoxides), thereby usually generating vicinal trans-diols. EHs have been found in all types of living organisms, including mammals, invertebrates, plants, fungi and bacteria. In animals, the major interest in EH is directed towards their detoxification capacity for epoxides since they are important safeguards against the cytotoxic and genotoxic potential of oxirane derivatives that are often reactive electrophiles because of the high tension of the three-membered ring system and the strong polarisation of the C--O bonds. This is of significant relevance because epoxides are frequent intermediary metabolites, which arise during the biotransformation of foreign compounds []. This domain is often found in conjunction with IPR000073 from INTERPRO.; GO: 0004301 epoxide hydrolase activity, 0009636 response to toxin, 0016020 membrane; PDB: 3G0I_B 3G02_A 1QO7_A.
Probab=46.48 E-value=22 Score=26.51 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=20.6
Q ss_pred eEEEEecCCCcEEEEEeeCCC--CCCcEEEeccccccc
Q psy17378 47 EEHKVQTEDGYILTNFRMPNP--GGYPIIMFHGLSVSS 82 (181)
Q Consensus 47 e~h~v~T~DGyiL~l~Ri~~~--~~~pVll~HGl~~ss 82 (181)
-.|..++=||--+-.-+...+ +..|+||+||-=+|=
T Consensus 68 ~phf~t~I~g~~iHFih~rs~~~~aiPLll~HGWPgSf 105 (112)
T PF06441_consen 68 FPHFKTEIDGLDIHFIHVRSKRPNAIPLLLLHGWPGSF 105 (112)
T ss_dssp S-EEEEEETTEEEEEEEE--S-TT-EEEEEE--SS--G
T ss_pred CCCeeEEEeeEEEEEEEeeCCCCCCeEEEEECCCCccH
Confidence 346777778888876666543 567999999975553
No 95
>PRK10162 acetyl esterase; Provisional
Probab=42.85 E-value=47 Score=28.52 Aligned_cols=59 Identities=15% Similarity=0.068 Sum_probs=35.9
Q ss_pred ceeEEEEecCCCcEEEEEee-CCC-CCCcEEEecccc---cccccccccCCCCCCCcchhhhhc-CCCceeeeccc
Q psy17378 45 PSEEHKVQTEDGYILTNFRM-PNP-GGYPIIMFHGLS---VSSDCWLLRNPKEDFGKSDFIVKE-GSLLDVFEGFI 114 (181)
Q Consensus 45 ~~e~h~v~T~DGyiL~l~Ri-~~~-~~~pVll~HGl~---~ss~~~~~~~~~~sl~~~~~~Lad-~~GyDVWl~n~ 114 (181)
.+|+..|.+.||- +.+..+ |.+ ..|+|++.||=. .+...|. .++ -.|+. . |+-|...+.
T Consensus 56 ~~~~~~i~~~~g~-i~~~~y~P~~~~~p~vv~~HGGg~~~g~~~~~~------~~~---~~la~~~-g~~Vv~vdY 120 (318)
T PRK10162 56 ATRAYMVPTPYGQ-VETRLYYPQPDSQATLFYLHGGGFILGNLDTHD------RIM---RLLASYS-GCTVIGIDY 120 (318)
T ss_pred eEEEEEEecCCCc-eEEEEECCCCCCCCEEEEEeCCcccCCCchhhh------HHH---HHHHHHc-CCEEEEecC
Confidence 4788889999983 444333 322 456788999943 3333331 233 33444 6 999988776
No 96
>cd01766 Ufm1 Urm1-like ubiquitin domain. Ufm1 (ubiquitin-fold modifier 1) is a post-translational UBL (ubiquitin-like) modifier with a tertiary structure similar to that of ubiquitin. Ufm1 is initially expressed as a precursor which undergoes C-terminal cleavage to expose a conserved glycine residue that is required for the conjugation reactions involving Ufm1.
Probab=41.84 E-value=45 Score=23.50 Aligned_cols=67 Identities=18% Similarity=0.231 Sum_probs=42.0
Q ss_pred ceeEEEEEEeeCcchhhhcc--CC--CcCCCHHHHHhhcCCceeEEEEecCCCcEEEEEeeCCCCCCcEEEeccc
Q psy17378 8 TKGKFSFAMVRGEVLEDMLN--RR--SFTTLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGL 78 (181)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~~~~pVll~HGl 78 (181)
.|++|-+++-+..++....- +| .|..-..-..+...-+.++--+.|.||--++ |.....-|||-||.
T Consensus 1 ~KVtFkitltSdp~lpfkvlsVpE~aPftAvlkfaAEeFkv~~~TsAiiTndGvGIN----P~qtAGnvflkhgs 71 (82)
T cd01766 1 SKVTFKITLTSDPKLPFKVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGIN----PAQTAGNVFLKHGS 71 (82)
T ss_pred CceEEEEEecCCCCCcceEEeccccCchHHHHHHHHHhcCCCccceeEEecCccccC----hhhcccceeeecCC
Confidence 47888888888877665332 22 2332233345667777777788888887443 22244568998984
No 97
>cd04861 LigD_Pol_like LigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Pseudomonas aeruginosa (Pae) LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. PaeLigD is monomeric, containing an N-terminal phosphoesterase module, a central polymerase (Pol) domain, and a C-terminal ATP-dependent ligase domain. Mycobacterium tuberculosis (Mt)LigD, also found in this group, is monomeric and contains the same modules but these are arranged differently: an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase do
Probab=41.70 E-value=21 Score=30.16 Aligned_cols=55 Identities=13% Similarity=0.152 Sum_probs=39.7
Q ss_pred CcEEEEEeeCCCCCCcEEEecccccccccccccCCC----CCCCcchhhhhcCCCce-eeeccc
Q psy17378 56 GYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPK----EDFGKSDFIVKEGSLLD-VFEGFI 114 (181)
Q Consensus 56 GyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~----~sl~~~~~~Lad~~GyD-VWl~n~ 114 (181)
|..|+|.|.|++-..+-|+|-......-.|+...+- .+.. |++.+. -=. ||+.|.
T Consensus 21 ~RPltl~R~P~Gi~~~~FfqK~~~~~~P~wv~t~~~~~~~~~~~---y~~i~d-~~~Lvwlan~ 80 (227)
T cd04861 21 GRPLTLVRYPDGIDGESFFQKHAPAGAPDWVRTVEVESEGGTIN---YLLVND-AAGLVWLANL 80 (227)
T ss_pred CCceEeEECCCCCCCCceeeCCCCCCCCCceEEEeeccCCCccc---eEEeCC-HHHHHHHHHh
Confidence 678999999999767779998888888888764322 2334 776655 333 888887
No 98
>KOG4391|consensus
Probab=40.76 E-value=69 Score=27.57 Aligned_cols=114 Identities=17% Similarity=0.148 Sum_probs=70.9
Q ss_pred HhhcCCceeEEEEecCCCcEEEEEeeCCC-CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccceec
Q psy17378 39 ISFWGYPSEEHKVQTEDGYILTNFRMPNP-GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFF 117 (181)
Q Consensus 39 i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~-~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~~~l 117 (181)
=+.+|-|-|...+.|.|--.|.-|-+... .+|-+|..||=..|..-++.+- +-+.... +-.|.+...+++
T Consensus 47 P~~~n~pye~i~l~T~D~vtL~a~~~~~E~S~pTlLyfh~NAGNmGhr~~i~--------~~fy~~l-~mnv~ivsYRGY 117 (300)
T KOG4391|consen 47 PKEFNMPYERIELRTRDKVTLDAYLMLSESSRPTLLYFHANAGNMGHRLPIA--------RVFYVNL-KMNVLIVSYRGY 117 (300)
T ss_pred ccccCCCceEEEEEcCcceeEeeeeecccCCCceEEEEccCCCcccchhhHH--------HHHHHHc-CceEEEEEeecc
Confidence 35689999999999999999999998755 6777999999888877654422 1222344 566666555444
Q ss_pred CccchhhhcCCccceeeeCCCcceEEEEecCCCCCCcEEEEeecccccc
Q psy17378 118 QPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSD 166 (181)
Q Consensus 118 ~~~~~~~w~ys~de~avyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~ 166 (181)
..+ -+-+.|+=-+.|.++.++.+..-+.-.++.+++ -|-|.|.+
T Consensus 118 G~S----~GspsE~GL~lDs~avldyl~t~~~~dktkivl-fGrSlGGA 161 (300)
T KOG4391|consen 118 GKS----EGSPSEEGLKLDSEAVLDYLMTRPDLDKTKIVL-FGRSLGGA 161 (300)
T ss_pred ccC----CCCccccceeccHHHHHHHHhcCccCCcceEEE-EecccCCe
Confidence 321 133445555667777666554433222333333 35555444
No 99
>COG0412 Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=40.23 E-value=37 Score=28.20 Aligned_cols=57 Identities=16% Similarity=0.154 Sum_probs=39.9
Q ss_pred eEEEEecCCCcEEEEEee-CCC--CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 47 EEHKVQTEDGYILTNFRM-PNP--GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 47 e~h~v~T~DGyiL~l~Ri-~~~--~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
+.+.+.++|+ .+.-+.. |.+ +.|.|++.|+++.-... -+..+ -.||.+ ||.|-..+.
T Consensus 3 ~~v~~~~~~~-~~~~~~a~P~~~~~~P~VIv~hei~Gl~~~------i~~~a---~rlA~~-Gy~v~~Pdl 62 (236)
T COG0412 3 TDVTIPAPDG-ELPAYLARPAGAGGFPGVIVLHEIFGLNPH------IRDVA---RRLAKA-GYVVLAPDL 62 (236)
T ss_pred cceEeeCCCc-eEeEEEecCCcCCCCCEEEEEecccCCchH------HHHHH---HHHHhC-CcEEEechh
Confidence 5667788883 3333333 433 23679999998776653 35678 889999 999999888
No 100
>PRK11460 putative hydrolase; Provisional
Probab=40.12 E-value=20 Score=29.40 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=16.9
Q ss_pred CCCcEEEecccccccccccc
Q psy17378 68 GGYPIIMFHGLSVSSDCWLL 87 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~ 87 (181)
.++.|+++||..++...|..
T Consensus 15 ~~~~vIlLHG~G~~~~~~~~ 34 (232)
T PRK11460 15 AQQLLLLFHGVGDNPVAMGE 34 (232)
T ss_pred CCcEEEEEeCCCCChHHHHH
Confidence 56779999999999998743
No 101
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.81 E-value=88 Score=20.74 Aligned_cols=35 Identities=9% Similarity=0.148 Sum_probs=29.0
Q ss_pred CCHHHHHhhcCCceeEEEEecCCCcEEEEEeeCCC
Q psy17378 33 TLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNP 67 (181)
Q Consensus 33 ~~~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 67 (181)
..+...+...|..+..-.+.|.+|+.+..+|+..+
T Consensus 16 ~~i~~~l~~~~lnI~sa~i~t~~~~~~d~f~v~~~ 50 (72)
T cd04926 16 SDVTRVFRENGLTVTRAEISTQGDMAVNVFYVTDA 50 (72)
T ss_pred HHHHHHHHHCCcEEEEEEEecCCCeEEEEEEEECC
Confidence 34667889999999887888999999999998654
No 102
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=38.55 E-value=30 Score=24.51 Aligned_cols=48 Identities=19% Similarity=0.211 Sum_probs=35.5
Q ss_pred ecceeEEEEEEeeCcchhhhccCCCcCCCHHHHHhhcCCceeEEEEec
Q psy17378 6 NKTKGKFSFAMVRGEVLEDMLNRRSFTTLKPEIISFWGYPSEEHKVQT 53 (181)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gy~~e~h~v~T 53 (181)
|+++-.+-+-+-.|+-++...+..+-...+-..+..+|++.+++.+.|
T Consensus 2 ~~~~t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~g~~~~~f~L~t 49 (82)
T cd01773 2 NGPKARLMLRYPDGKREQIALPEQAKLLALVRHVQSKGYPNERFELLT 49 (82)
T ss_pred CCCeeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCCEEEec
Confidence 456666777778888888888776544445556888999999988877
No 103
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD is the N-terminal ACT domain of a yet characterized Arabidopsis/Oryza predicted tyrosine kinase. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.48 E-value=54 Score=21.75 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=27.9
Q ss_pred CCHHHHHhhcCCceeEEEEe-cCCCcEEEEEeeCCC
Q psy17378 33 TLKPEIISFWGYPSEEHKVQ-TEDGYILTNFRMPNP 67 (181)
Q Consensus 33 ~~~~~~i~~~gy~~e~h~v~-T~DGyiL~l~Ri~~~ 67 (181)
..+...+..+|..+..-++. |.||+.+..|.+..+
T Consensus 16 ~~i~~~l~~~~l~I~~A~i~T~~~~~v~D~F~v~~~ 51 (73)
T cd04900 16 ARIAGALDQLGLNILDARIFTTRDGYALDTFVVLDP 51 (73)
T ss_pred HHHHHHHHHCCCCeEEeEEEEeCCCeEEEEEEEECC
Confidence 34677889999999887765 559999999998654
No 104
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). This CD includes the second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein). ACR proteins, found only in Arabidopsis and Oryza, as yet, are proposed to function as novel regulatory or sensor proteins in plants. Nine ACR gene products have been described (ACR1-8 in Arabidopsis and OsARC1-9 in Oryza) and are represented in this CD. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=38.43 E-value=47 Score=22.27 Aligned_cols=39 Identities=8% Similarity=0.026 Sum_probs=32.1
Q ss_pred CCcCCCHHHHHhhcCCceeEEEEecCCCcEEEEEeeCCC
Q psy17378 29 RSFTTLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNP 67 (181)
Q Consensus 29 ~~~~~~~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 67 (181)
+.....+...+..+|..+..-++.|.||+.+..+.+..+
T Consensus 11 ~gLl~~i~~~l~~~~lnI~~A~i~t~~~~~~d~f~V~d~ 49 (74)
T cd04925 11 PGLLSEVFAVLADLHCNVVEARAWTHNGRLACVIYVRDE 49 (74)
T ss_pred CCHHHHHHHHHHHCCCcEEEEEEEEECCEEEEEEEEEcC
Confidence 344445778899999999998888999999999998654
No 105
>TIGR02776 NHEJ_ligase_prk DNA ligase D. Members of this protein family are DNA ligases involved in the repair of DNA double-stranded breaks by non-homologous end joining (NHEJ). The system of the bacterial Ku protein (TIGR02772) plus this DNA ligase is seen in about 20 % of bacterial genomes to date and at least one archaeon (Archeoglobus fulgidus). This model describes a central and a C-terminal domain. These two domains may be permuted, as in genus Mycobacterium, or divided into tandem ORFs, and therefore not be identified by this model. An additional N-terminal 3'-phosphoesterase (PE) domain present in some but not all examples of this ligase is not included in the seed alignment for this model; This alignment models only the central ATP-dependent ligase domain and the C-terminal polymerase domain. Most examples of genes for this ligase are adjacent to the gene for Ku.
Probab=38.42 E-value=24 Score=33.50 Aligned_cols=55 Identities=11% Similarity=0.071 Sum_probs=38.7
Q ss_pred CcEEEEEeeCCCCCCcEEEecccccccccccccCCC-CCCCcchhhhhcCCCce-eeeccc
Q psy17378 56 GYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPK-EDFGKSDFIVKEGSLLD-VFEGFI 114 (181)
Q Consensus 56 GyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~-~sl~~~~~~Lad~~GyD-VWl~n~ 114 (181)
|..|+|.|.|++-..+-|+|-......-.|+..-+- .... |++++. -=. ||+.|.
T Consensus 317 ~Rpl~l~R~P~Gi~~~~FfqK~~~~~~p~~v~t~~~~~~~~---y~~~~~-~~~L~~~~n~ 373 (552)
T TIGR02776 317 GRPLSLIRCPDGIGGECFFQKHAPDYAPPFVASFKDGDEKE---YLVCND-AEGLLWLAQQ 373 (552)
T ss_pred CCceEeEECCCCCCCCceeecCCCCCCCCceEEEecCCccc---eEEeCC-HHHHHHHHHh
Confidence 678999999998666678888887777788753221 2334 776665 443 888887
No 106
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=38.41 E-value=46 Score=35.64 Aligned_cols=61 Identities=11% Similarity=0.190 Sum_probs=36.6
Q ss_pred CCceeEEEEec-CCCcEEEE--EeeCC-CCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 43 GYPSEEHKVQT-EDGYILTN--FRMPN-PGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 43 gy~~e~h~v~T-~DGyiL~l--~Ri~~-~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
|-....+.+.. .||....+ +.... +.++||+|+||+..++..|... . -.|+ . +|.|...+.
T Consensus 1341 ~~~l~~~~~~v~~~~~~~~i~~~~~G~~~~~~~vVllHG~~~s~~~w~~~------~---~~L~-~-~~rVi~~Dl 1405 (1655)
T PLN02980 1341 EEQVRTYELRVDVDGFSCLIKVHEVGQNAEGSVVLFLHGFLGTGEDWIPI------M---KAIS-G-SARCISIDL 1405 (1655)
T ss_pred cCCCceEEEEEccCceEEEEEEEecCCCCCCCeEEEECCCCCCHHHHHHH------H---HHHh-C-CCEEEEEcC
Confidence 55555655543 45533222 22222 2468999999999999999532 2 2232 3 678877776
No 107
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=37.83 E-value=47 Score=29.75 Aligned_cols=48 Identities=10% Similarity=0.221 Sum_probs=31.6
Q ss_pred hhhhcCCccceeeeCCCcceEEEEecCCCCCCcEEEEeecccccccce
Q psy17378 122 ISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWL 169 (181)
Q Consensus 122 ~~~w~ys~de~avyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~~w~ 169 (181)
...++...-.......+++-..........++++++.||+.+++..|-
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~y~~~G~~~~~~ivllHG~~~~~~~w~ 144 (383)
T PLN03084 97 DPIFGLKMGAQSQASSDLFRWFCVESGSNNNPPVLLIHGFPSQAYSYR 144 (383)
T ss_pred CccccccccceeEEcCCceEEEEEecCCCCCCeEEEECCCCCCHHHHH
Confidence 456777766666666666654333222224578999999999888875
No 108
>KOG4409|consensus
Probab=36.01 E-value=15 Score=33.07 Aligned_cols=26 Identities=12% Similarity=0.393 Sum_probs=22.7
Q ss_pred CCCCcEEEEeecccccccceecCCCC
Q psy17378 150 PGGYPIIMFHGLSVSSDCWLLRYEVN 175 (181)
Q Consensus 150 ~~~~~vll~HGl~~~s~~w~~~g~~~ 175 (181)
.+++|.++.||++.|.+.|+.|.++-
T Consensus 88 ~~~~plVliHGyGAg~g~f~~Nf~~L 113 (365)
T KOG4409|consen 88 ANKTPLVLIHGYGAGLGLFFRNFDDL 113 (365)
T ss_pred cCCCcEEEEeccchhHHHHHHhhhhh
Confidence 46889999999999999999998653
No 109
>PRK08775 homoserine O-acetyltransferase; Provisional
Probab=33.75 E-value=51 Score=28.29 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=14.8
Q ss_pred CCcEEEEEeeCCCCCCcEEEecccccccc
Q psy17378 55 DGYILTNFRMPNPGGYPIIMFHGLSVSSD 83 (181)
Q Consensus 55 DGyiL~l~Ri~~~~~~pVll~HGl~~ss~ 83 (181)
+|..|.-. .....++|++|+||.++++.
T Consensus 44 ~~~~l~y~-~~G~~~~p~vll~g~~~~~~ 71 (343)
T PRK08775 44 EDLRLRYE-LIGPAGAPVVFVAGGISAHR 71 (343)
T ss_pred CCceEEEE-EeccCCCCEEEEecCCCccc
Confidence 67666633 33323446665655555554
No 110
>TIGR01849 PHB_depoly_PhaZ polyhydroxyalkanoate depolymerase, intracellular. This model represents an intracellular depolymerase for polyhydroxyalkanoate (PHA), a carbon and energy storing polyester that accumulates in granules in many bacterial species when carbon sources are abundant but other nutrients are limiting. This family is named for PHAs generally, rather than polyhydroxybutyrate (PHB) specificially as in Ralstonia eutropha H16, to avoid overcalling chemical specificity in other species. Note that this family lacks the classic GXSXG lipase motif and instead shows weak similarity to some
Probab=33.63 E-value=39 Score=30.85 Aligned_cols=107 Identities=12% Similarity=-0.046 Sum_probs=59.9
Q ss_pred HhhcCCceeEEEEecCCCcEEEEEeeCCC--C----CCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeec
Q psy17378 39 ISFWGYPSEEHKVQTEDGYILTNFRMPNP--G----GYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEG 112 (181)
Q Consensus 39 i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~--~----~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~ 112 (181)
+...-.++++..|-..+-- +|.|+.+. + ++|||++--+...-.. . .+|+. |++|+ |+||++.
T Consensus 68 ~~~~~~~v~e~vV~~~~~~--~L~~y~~~~~~~~~~~~pvLiV~Pl~g~~~~--L---~RS~V--~~Ll~---g~dVYl~ 135 (406)
T TIGR01849 68 VDGKDVPIRERVVWDKPFC--RLIHFKRQGFRAELPGPAVLIVAPMSGHYAT--L---LRSTV--EALLP---DHDVYIT 135 (406)
T ss_pred ECCEEeeeEEEEEEECCCe--EEEEECCCCcccccCCCcEEEEcCCchHHHH--H---HHHHH--HHHhC---CCcEEEE
Confidence 3334456666666655544 55555433 1 3799999988633333 3 26777 35543 8999999
Q ss_pred cceecCccchhhhcCCccceeeeCCCcceEEEEecCCCCCCcEEEEeecccccc
Q psy17378 113 FISFFQPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSD 166 (181)
Q Consensus 113 n~~~l~~~~~~~w~ys~de~avyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~ 166 (181)
+|..-.....+--.|.+|+|.- =++.+|. . .|.. +-.+|.+|++.
T Consensus 136 DW~~p~~vp~~~~~f~ldDYi~-~l~~~i~---~----~G~~-v~l~GvCqgG~ 180 (406)
T TIGR01849 136 DWVNARMVPLSAGKFDLEDYID-YLIEFIR---F----LGPD-IHVIAVCQPAV 180 (406)
T ss_pred eCCCCCCCchhcCCCCHHHHHH-HHHHHHH---H----hCCC-CcEEEEchhhH
Confidence 9833221123345667777752 2233331 1 1444 45567777765
No 111
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=33.33 E-value=1.3e+02 Score=28.65 Aligned_cols=69 Identities=12% Similarity=0.047 Sum_probs=47.7
Q ss_pred HHhhcCCceeEEEEecCCCcEEEEEee-CCC----CC-CcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeee
Q psy17378 38 IISFWGYPSEEHKVQTEDGYILTNFRM-PNP----GG-YPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFE 111 (181)
Q Consensus 38 ~i~~~gy~~e~h~v~T~DGyiL~l~Ri-~~~----~~-~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl 111 (181)
+.+...++.|...+.+.||-.+.-+=+ |.+ ++ |.|++.||==.+...|... -.. -.|+.+ ||=|-.
T Consensus 357 ~~~~~~~~~e~~~~~~~dG~~i~~~l~~P~~~~~~k~yP~i~~~hGGP~~~~~~~~~----~~~---q~~~~~-G~~V~~ 428 (620)
T COG1506 357 LKKVKLAEPEPVTYKSNDGETIHGWLYKPPGFDPRKKYPLIVYIHGGPSAQVGYSFN----PEI---QVLASA-GYAVLA 428 (620)
T ss_pred ccccccCCceEEEEEcCCCCEEEEEEecCCCCCCCCCCCEEEEeCCCCccccccccc----hhh---HHHhcC-CeEEEE
Confidence 445678889999999999987765554 433 22 5588999986555554332 223 456788 999999
Q ss_pred ccc
Q psy17378 112 GFI 114 (181)
Q Consensus 112 ~n~ 114 (181)
.|.
T Consensus 429 ~n~ 431 (620)
T COG1506 429 PNY 431 (620)
T ss_pred eCC
Confidence 886
No 112
>KOG1454|consensus
Probab=33.31 E-value=27 Score=30.56 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=21.1
Q ss_pred CCCcEEEEeecccccccceecCCCC
Q psy17378 151 GGYPIIMFHGLSVSSDCWLLRYEVN 175 (181)
Q Consensus 151 ~~~~vll~HGl~~~s~~w~~~g~~~ 175 (181)
.++|+++.||++.++..|--+-+..
T Consensus 57 ~~~pvlllHGF~~~~~~w~~~~~~L 81 (326)
T KOG1454|consen 57 DKPPVLLLHGFGASSFSWRRVVPLL 81 (326)
T ss_pred CCCcEEEeccccCCcccHhhhcccc
Confidence 5789999999999999998776543
No 113
>COG0400 Predicted esterase [General function prediction only]
Probab=32.90 E-value=31 Score=28.47 Aligned_cols=20 Identities=20% Similarity=0.222 Sum_probs=15.7
Q ss_pred CCCcEEEecccccccccccc
Q psy17378 68 GGYPIIMFHGLSVSSDCWLL 87 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~ 87 (181)
..|.|+|+||+..+..+++.
T Consensus 17 ~~~~iilLHG~Ggde~~~~~ 36 (207)
T COG0400 17 AAPLLILLHGLGGDELDLVP 36 (207)
T ss_pred CCcEEEEEecCCCChhhhhh
Confidence 44559999999988877755
No 114
>cd04863 MtLigD_Pol_like MtLigD_Pol_like: Polymerase (Pol) domain of bacterial LigD proteins similar to Mycobacterium tuberculosis (Mt)LigD. The LigD Pol domain belongs to the archaeal/eukaryal primase (AEP) superfamily. In prokaryotes, LigD along with Ku is required for non-homologous end joining (NHEJ)-mediated repair of DNA double-strand breaks (DSB). NHEJ-mediated DNA DSB repair is error-prone. MtLigD is monomeric and contains an N-terminal Pol domain, a central phosphoesterase module, and a C-terminal ligase domain. It has been suggested that LigD Pol contributes to NHEJ-mediated DNA DSB repair in vivo, by filling in short 5'-overhangs with ribonucleotides; the filled in termini would then be sealed by the associated LigD ligase domain, resulting in short stretches of RNA incorporated into the genomic DNA. The MtLigD Pol domain is stimulated by manganese, is error-prone, and prefers adding rNTPs to dNTPs in vitro. The MtLigD Pol domain has been shown to prefer DNA gapped substrates
Probab=32.44 E-value=49 Score=28.02 Aligned_cols=58 Identities=14% Similarity=0.180 Sum_probs=38.4
Q ss_pred CcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCC-C-cchhhhhcCCCce-eeeccc
Q psy17378 56 GYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDF-G-KSDFIVKEGSLLD-VFEGFI 114 (181)
Q Consensus 56 GyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl-~-~~~~~Lad~~GyD-VWl~n~ 114 (181)
|..|+|.|.|++-..+-|+|-......-.|+..-+-.+- + ..+|++++. -=. |||.|.
T Consensus 21 ~RPltl~R~P~Gi~~~~FfQK~~~~~~P~wv~t~~i~~~~~~~~~y~~~~d-~~~Lv~lan~ 81 (231)
T cd04863 21 GRPVTRKRWPDGVDGPFFFEKNCPSGAPDWLPTAEVRSEGSGTLTYPLVND-LATLAWAANL 81 (231)
T ss_pred CCceEeEECCCCCCCCceeecCCCCCCCCceEEEEeecCCCCccceEEeCC-HHHHHHHHHh
Confidence 678999999999666778898887777788753211100 1 113776655 333 888887
No 115
>PF09565 RE_NgoFVII: NgoFVII restriction endonuclease; InterPro: IPR019065 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This domain is found in NgoFVII restriction endonuclease, which recognises GCSGC but cleavage site is unknown. It is also found as the C-terminal domain of the res subunit of some type III restriction endonucleases.
Probab=31.82 E-value=51 Score=28.86 Aligned_cols=31 Identities=26% Similarity=0.276 Sum_probs=25.2
Q ss_pred HHHHHhhcCCc--eeEEEEecCCCcEEEEEeeC
Q psy17378 35 KPEIISFWGYP--SEEHKVQTEDGYILTNFRMP 65 (181)
Q Consensus 35 ~~~~i~~~gy~--~e~h~v~T~DGyiL~l~Ri~ 65 (181)
..++.+.-+|| -+.+.|.|+||+++....=.
T Consensus 224 p~~i~~~~~fP~~~~~f~~itddG~~~~~~~~~ 256 (296)
T PF09565_consen 224 PKEIHRNPFFPQKKKPFTVITDDGWIFEAKVCQ 256 (296)
T ss_pred CHHHhcCCCCCCCCCceEEEcCCCcEEEEEecc
Confidence 45577778999 78899999999999986533
No 116
>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase. This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.
Probab=30.58 E-value=42 Score=22.05 Aligned_cols=41 Identities=20% Similarity=0.127 Sum_probs=25.0
Q ss_pred chhhhccCCCcCCCHHHHHhhcCCceeEEEEecCCCcEEEEE
Q psy17378 21 VLEDMLNRRSFTTLKPEIISFWGYPSEEHKVQTEDGYILTNF 62 (181)
Q Consensus 21 ~~~~~~~~~~~~~~~~~~i~~~gy~~e~h~v~T~DGyiL~l~ 62 (181)
.++=..+.+.....++..++..||.+.++.- .++.|.+.+.
T Consensus 29 ~l~v~~d~~~~~~di~~~~~~~g~~~~~~~~-~~~~~~i~I~ 69 (70)
T PF01206_consen 29 VLEVLVDDPAAVEDIPRWCEENGYEVVEVEE-EGGEYRILIR 69 (70)
T ss_dssp EEEEEESSTTHHHHHHHHHHHHTEEEEEEEE-SSSSEEEEEE
T ss_pred EEEEEECCccHHHHHHHHHHHCCCEEEEEEE-eCCEEEEEEE
Confidence 3333444555545678899999998655443 5555555543
No 117
>PRK09633 ligD ATP-dependent DNA ligase; Reviewed
Probab=30.09 E-value=44 Score=32.13 Aligned_cols=55 Identities=16% Similarity=0.186 Sum_probs=40.4
Q ss_pred CcEEEEEeeCCCCCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCce-eeeccc
Q psy17378 56 GYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLD-VFEGFI 114 (181)
Q Consensus 56 GyiL~l~Ri~~~~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyD-VWl~n~ 114 (181)
|..|+|.|.|++-..+-|+|-..-...-.|+..-+-.... |++.+. -=. ||+.|.
T Consensus 360 ~Rp~~l~R~P~Gi~~~~FfqK~~~~~~p~~v~t~~~~~~~---y~~~~d-~~~L~~~a~~ 415 (610)
T PRK09633 360 DRALTVIRYPHGSGGESFYQKNKPDYAPDFVQSARDDEIE---YIVCND-LSTLLWLGNQ 415 (610)
T ss_pred CCceEeEECCCCCCCCceeeCCCCCCCCCceEEeccCccc---eEEeCC-HHHHHHHHHc
Confidence 6789999999986667788888877777888654333344 777665 333 899887
No 118
>PF05057 DUF676: Putative serine esterase (DUF676); InterPro: IPR007751 This domain, whose function is unknown, is found within a group of putative lipases.
Probab=29.48 E-value=24 Score=28.74 Aligned_cols=18 Identities=17% Similarity=0.150 Sum_probs=15.0
Q ss_pred CcEEEecccccccccccc
Q psy17378 70 YPIIMFHGLSVSSDCWLL 87 (181)
Q Consensus 70 ~pVll~HGl~~ss~~~~~ 87 (181)
--|+++||+.++..+|..
T Consensus 5 hLvV~vHGL~G~~~d~~~ 22 (217)
T PF05057_consen 5 HLVVFVHGLWGNPADMRY 22 (217)
T ss_pred EEEEEeCCCCCCHHHHHH
Confidence 458999999999998843
No 119
>PF01738 DLH: Dienelactone hydrolase family; InterPro: IPR002925 Dienelactone hydrolases play a crucial role in chlorocatechol degradation via the modified ortho cleavage pathway. Enzymes induced in 4-fluorobenzoate-utilizing bacteria have been classified into three groups on the basis of their specificity towards cis- and trans-dienelactone []. Some proteins contain repeated small fragments of this domain (for example rat kan-1 protein).; GO: 0016787 hydrolase activity; PDB: 1GGV_A 1ZIY_A 1ZI6_A 1ZIC_A 1ZJ5_A 1ZI8_A 1ZJ4_A 1ZI9_A 1ZIX_A 3F67_A.
Probab=28.58 E-value=19 Score=28.70 Aligned_cols=37 Identities=11% Similarity=-0.034 Sum_probs=25.2
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeeccc
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFI 114 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~n~ 114 (181)
++|.|++.|+++.-. .+ .+.++ -.||++ ||.|.+.+.
T Consensus 13 ~~~~Vvv~~d~~G~~-~~-----~~~~a---d~lA~~-Gy~v~~pD~ 49 (218)
T PF01738_consen 13 PRPAVVVIHDIFGLN-PN-----IRDLA---DRLAEE-GYVVLAPDL 49 (218)
T ss_dssp SEEEEEEE-BTTBS--HH-----HHHHH---HHHHHT-T-EEEEE-C
T ss_pred CCCEEEEEcCCCCCc-hH-----HHHHH---HHHHhc-CCCEEeccc
Confidence 467899999987655 21 23577 788999 999999998
No 120
>PLN02578 hydrolase
Probab=27.84 E-value=70 Score=27.64 Aligned_cols=21 Identities=33% Similarity=0.751 Sum_probs=17.0
Q ss_pred CCCCcEEEEeeccccccccee
Q psy17378 150 PGGYPIIMFHGLSVSSDCWLL 170 (181)
Q Consensus 150 ~~~~~vll~HGl~~~s~~w~~ 170 (181)
..+.|+++.||+++++..|.-
T Consensus 84 g~g~~vvliHG~~~~~~~w~~ 104 (354)
T PLN02578 84 GEGLPIVLIHGFGASAFHWRY 104 (354)
T ss_pred CCCCeEEEECCCCCCHHHHHH
Confidence 456789999999998888843
No 121
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=27.70 E-value=26 Score=29.84 Aligned_cols=38 Identities=21% Similarity=0.238 Sum_probs=28.1
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCce-eeeccc
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLD-VFEGFI 114 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyD-VWl~n~ 114 (181)
....||++||....|..... .|- .++-+. ||| |++++.
T Consensus 137 ~e~~vlmgHGt~h~s~~~Ya-----cLd---~~~~~~-~f~~v~v~~v 175 (265)
T COG4822 137 DEILVLMGHGTDHHSNAAYA-----CLD---HVLDEY-GFDNVFVAAV 175 (265)
T ss_pred CeEEEEEecCCCccHHHHHH-----HHH---HHHHhc-CCCceEEEEe
Confidence 34579999999877765322 355 888899 996 888887
No 122
>PF02230 Abhydrolase_2: Phospholipase/Carboxylesterase; InterPro: IPR003140 This entry represents the alpha/beta hydrolase domain found in phospholipases [], carboxylesterases [] and thioesterases.; GO: 0016787 hydrolase activity; PDB: 3U0V_A 1AUR_A 1AUO_B 1FJ2_B 3CN9_A 3CN7_A.
Probab=27.28 E-value=23 Score=28.31 Aligned_cols=20 Identities=30% Similarity=0.468 Sum_probs=12.7
Q ss_pred CCCcEEEecccccccccccc
Q psy17378 68 GGYPIIMFHGLSVSSDCWLL 87 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~ 87 (181)
.++.|+++||+.++.+.|..
T Consensus 13 ~~~lvi~LHG~G~~~~~~~~ 32 (216)
T PF02230_consen 13 AKPLVILLHGYGDSEDLFAL 32 (216)
T ss_dssp -SEEEEEE--TTS-HHHHHH
T ss_pred CceEEEEECCCCCCcchhHH
Confidence 56679999999999877654
No 123
>KOG1628|consensus
Probab=27.26 E-value=85 Score=26.83 Aligned_cols=43 Identities=26% Similarity=0.307 Sum_probs=30.2
Q ss_pred HHHHhhcCCceeEEE-EecCCCcEEEEEeeCCC------CCCcEEEeccc
Q psy17378 36 PEIISFWGYPSEEHK-VQTEDGYILTNFRMPNP------GGYPIIMFHGL 78 (181)
Q Consensus 36 ~~~i~~~gy~~e~h~-v~T~DGyiL~l~Ri~~~------~~~pVll~HGl 78 (181)
..++++|--..|.+. |.|-|||.|.|+=|.-. .+..-+-|||-
T Consensus 108 ~smvkKwqt~ieA~v~vkT~dgy~Lrlf~i~ftkk~~nqv~ktsyaq~~q 157 (249)
T KOG1628|consen 108 VSMVKKWQTLIEAVVDVKTTDGYLLRLFCIGFTKKLVNQVKKTSYAQHGQ 157 (249)
T ss_pred hhhhhhhhheeeeeEEeecccCceEEeeehHHHHHhhcccCCceeeecch
Confidence 456777766677654 88999999999987422 45556666654
No 124
>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain. The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=26.59 E-value=55 Score=21.39 Aligned_cols=41 Identities=12% Similarity=0.165 Sum_probs=23.7
Q ss_pred CcchhhhccCCCcCCCHHHHHhhcCCceeEEEEecCCCcEEEE
Q psy17378 19 GEVLEDMLNRRSFTTLKPEIISFWGYPSEEHKVQTEDGYILTN 61 (181)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~i~~~gy~~e~h~v~T~DGyiL~l 61 (181)
|+.+.=..+.+.....++..++..||.++... .++.|.+.+
T Consensus 25 g~~l~v~~d~~~s~~~i~~~~~~~G~~~~~~~--~~~~~~i~I 65 (67)
T cd03421 25 GGEIEVLVDNEVAKENVSRFAESRGYEVSVEE--KGGEFEITI 65 (67)
T ss_pred CCEEEEEEcChhHHHHHHHHHHHcCCEEEEEe--cCCEEEEEE
Confidence 33333334444444467889999999995443 333555543
No 125
>PF07137 VDE: Violaxanthin de-epoxidase (VDE); InterPro: IPR010788 This family represents a conserved region approximately 350 residues long within plant violaxanthin de-epoxidase (VDE). In higher plants, violaxanthin de-epoxidase forms part of a conserved system that dissipates excess energy as heat in the light-harvesting complexes of photosystem II (PSII), thus protecting them from photo-inhibitory damage [].; GO: 0046422 violaxanthin de-epoxidase activity, 0055114 oxidation-reduction process, 0009507 chloroplast; PDB: 3CQN_B 3CQR_A.
Probab=26.49 E-value=1.1e+02 Score=25.45 Aligned_cols=46 Identities=26% Similarity=0.450 Sum_probs=27.3
Q ss_pred CCceeEEEEecCCCcEEE---EEeeCCC-----------------CCCcEEEeccc--ccccccccccC
Q psy17378 43 GYPSEEHKVQTEDGYILT---NFRMPNP-----------------GGYPIIMFHGL--SVSSDCWLLRN 89 (181)
Q Consensus 43 gy~~e~h~v~T~DGyiL~---l~Ri~~~-----------------~~~pVll~HGl--~~ss~~~~~~~ 89 (181)
-|+|+.|...|++|- |. .+||+.+ ..|.+|.-|+= +..-+.|...+
T Consensus 55 ~FdCQ~h~F~~~~~k-l~~~~~wRi~~pdggf~~r~~~q~fvqD~~~Pg~lyn~dneyL~yqddWyIl~ 122 (198)
T PF07137_consen 55 TFDCQLHEFHTEKDK-LVGKINWRIPTPDGGFFTRSAVQRFVQDPSQPGILYNHDNEYLHYQDDWYILG 122 (198)
T ss_dssp TTSEEEEEEEEETTE-EEEEEEEEEE-TTS-EEEEEEEEEEEE-SS-TTEEEE---GGG-EEEEEEEEE
T ss_pred ccccccceeecCCCe-EEEEEEEEeecCCCCceeccceeEeeeCCCCCceEEecCCeeEEeeeeEEEEe
Confidence 478999999998883 43 5788755 35667777642 34445665543
No 126
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=24.80 E-value=86 Score=26.02 Aligned_cols=38 Identities=11% Similarity=0.110 Sum_probs=24.7
Q ss_pred CCCcEEEecccccccccccccCCCCCCCcchhhhhcCCCceeeec
Q psy17378 68 GGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEG 112 (181)
Q Consensus 68 ~~~pVll~HGl~~ss~~~~~~~~~~sl~~~~~~Lad~~GyDVWl~ 112 (181)
+.|-|+++||-..+...+... ..+. -|||+.||=|-..
T Consensus 15 ~~PLVv~LHG~~~~a~~~~~~---s~~~----~lAd~~GfivvyP 52 (220)
T PF10503_consen 15 PVPLVVVLHGCGQSAEDFAAG---SGWN----ALADREGFIVVYP 52 (220)
T ss_pred CCCEEEEeCCCCCCHHHHHhh---cCHH----HHhhcCCeEEEcc
Confidence 446688999999999887542 2232 3566667766433
No 127
>KOG3724|consensus
Probab=24.40 E-value=31 Score=34.45 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=62.8
Q ss_pred EEecCCCcEEEEEeeCCC---------CCCcEEEecccccccccccccCCCCCCC-------------cchhhhhcCCCc
Q psy17378 50 KVQTEDGYILTNFRMPNP---------GGYPIIMFHGLSVSSDCWLLRNPKEDFG-------------KSDFIVKEGSLL 107 (181)
Q Consensus 50 ~v~T~DGyiL~l~Ri~~~---------~~~pVll~HGl~~ss~~~~~~~~~~sl~-------------~~~~~Lad~~Gy 107 (181)
.-++.|-|-|-|||=... .+=|||+..|-.+|-.. -+|+| +++-.... +-|
T Consensus 61 ~t~~a~kY~LYLY~Egs~~~e~~~lelsGIPVLFIPGNAGSyKQ------vRSiAS~a~n~y~~~~~e~t~~~d~~-~~~ 133 (973)
T KOG3724|consen 61 LTPQADKYSLYLYREGSRWWERSTLELSGIPVLFIPGNAGSYKQ------VRSIASVAQNAYQGGPFEKTEDRDNP-FSF 133 (973)
T ss_pred ccCCCCceEEEEecccccccccccccCCCceEEEecCCCCchHH------HHHHHHHHhhhhcCCchhhhhcccCc-ccc
Confidence 456889999999995432 46799999986554322 01222 00111112 245
Q ss_pred eeeeccceecCccchhhhcCCccceeeeCCC--cceEEEEecCCC--CCCc-EEEEeecccccc
Q psy17378 108 DVFEGFISFFQPEIISFWGYPSEEHKVQTED--GYILTNFRMPNP--GGYP-IIMFHGLSVSSD 166 (181)
Q Consensus 108 DVWl~n~~~l~~~~~~~w~ys~de~avyDld--~yIl~i~rI~~~--~~~~-vll~HGl~~~s~ 166 (181)
|-+..| ++.+-..++|-...+++.|=.+ .||+.+||-... ...| .+...|||.|..
T Consensus 134 DFFaVD---FnEe~tAm~G~~l~dQtEYV~dAIk~ILslYr~~~e~~~p~P~sVILVGHSMGGi 194 (973)
T KOG3724|consen 134 DFFAVD---FNEEFTAMHGHILLDQTEYVNDAIKYILSLYRGEREYASPLPHSVILVGHSMGGI 194 (973)
T ss_pred ceEEEc---ccchhhhhccHhHHHHHHHHHHHHHHHHHHhhcccccCCCCCceEEEEeccchhH
Confidence 655555 4555567777777777776444 489999987221 1122 455567777654
No 128
>PRK06489 hypothetical protein; Provisional
Probab=24.09 E-value=97 Score=26.78 Aligned_cols=18 Identities=22% Similarity=0.514 Sum_probs=15.2
Q ss_pred CCcEEEEeecccccccce
Q psy17378 152 GYPIIMFHGLSVSSDCWL 169 (181)
Q Consensus 152 ~~~vll~HGl~~~s~~w~ 169 (181)
++|+++.||+..++..|.
T Consensus 69 gpplvllHG~~~~~~~~~ 86 (360)
T PRK06489 69 DNAVLVLHGTGGSGKSFL 86 (360)
T ss_pred CCeEEEeCCCCCchhhhc
Confidence 578999999998887775
No 129
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains. This ACT domain family, ACT_ACR-UUR-like_2, includes the second of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD; including those enzymes similar to the GlnD found in enteric Escherichia coli and those found in photosynthetic, nitrogen-fixing bacterium Rhodospirillum rubrum. Also included in this CD are the second and fourth ACT domains of a novel protein composed almost entirely of ACT domain repeats, the ACR protein. These ACR proteins, found in Arabidopsis and Oryza, are proposed to function as novel regulatory or sensor proteins in plants. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.20 E-value=1.7e+02 Score=18.56 Aligned_cols=35 Identities=11% Similarity=0.082 Sum_probs=29.1
Q ss_pred CCHHHHHhhcCCceeEEEEecCCCcEEEEEeeCCC
Q psy17378 33 TLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNP 67 (181)
Q Consensus 33 ~~~~~~i~~~gy~~e~h~v~T~DGyiL~l~Ri~~~ 67 (181)
..+...+..+|..+..-.+.|.+++.+.++.+..+
T Consensus 15 ~~i~~~l~~~~~~I~~~~~~~~~~~~~~~f~i~~~ 49 (70)
T cd04899 15 ADVTRVLAELGLNIHSAKIATLGERAEDVFYVTDA 49 (70)
T ss_pred HHHHHHHHHCCCeEEEEEEEecCCEEEEEEEEECC
Confidence 34667889999999888888888899999998654
No 130
>PRK03204 haloalkane dehalogenase; Provisional
Probab=23.17 E-value=1.2e+02 Score=25.24 Aligned_cols=42 Identities=21% Similarity=0.210 Sum_probs=24.2
Q ss_pred hcCCccceeeeCCCcceEEEEecCCCCCCcEEEEeecccccccce
Q psy17378 125 WGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWL 169 (181)
Q Consensus 125 w~ys~de~avyDld~yIl~i~rI~~~~~~~vll~HGl~~~s~~w~ 169 (181)
..|++.+..+.. ++.-.... ....++++++.||..+.+..|-
T Consensus 10 ~~~~~~~~~~~~-~~~~i~y~--~~G~~~~iv~lHG~~~~~~~~~ 51 (286)
T PRK03204 10 QLYPFESRWFDS-SRGRIHYI--DEGTGPPILLCHGNPTWSFLYR 51 (286)
T ss_pred ccccccceEEEc-CCcEEEEE--ECCCCCEEEEECCCCccHHHHH
Confidence 345555544433 44432222 2245678999999987777663
No 131
>PRK00870 haloalkane dehalogenase; Provisional
Probab=23.12 E-value=1.3e+02 Score=25.03 Aligned_cols=19 Identities=26% Similarity=0.485 Sum_probs=15.3
Q ss_pred CCCcEEEEeecccccccce
Q psy17378 151 GGYPIIMFHGLSVSSDCWL 169 (181)
Q Consensus 151 ~~~~vll~HGl~~~s~~w~ 169 (181)
.++++++.||...++..|-
T Consensus 45 ~~~~lvliHG~~~~~~~w~ 63 (302)
T PRK00870 45 DGPPVLLLHGEPSWSYLYR 63 (302)
T ss_pred CCCEEEEECCCCCchhhHH
Confidence 3678999999988887775
No 132
>PRK10749 lysophospholipase L2; Provisional
Probab=22.43 E-value=1.1e+02 Score=25.98 Aligned_cols=46 Identities=17% Similarity=0.234 Sum_probs=27.0
Q ss_pred hhhhcCCccceeeeCCCcceEEEEecCC-CCCCcEEEEeecccccccc
Q psy17378 122 ISFWGYPSEEHKVQTEDGYILTNFRMPN-PGGYPIIMFHGLSVSSDCW 168 (181)
Q Consensus 122 ~~~w~ys~de~avyDld~yIl~i~rI~~-~~~~~vll~HGl~~~s~~w 168 (181)
..+|.+. ++......+|+-+....-.. .++.++++.||+.+.+..|
T Consensus 24 ~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~vll~HG~~~~~~~y 70 (330)
T PRK10749 24 LDFWRQR-EEAEFTGVDDIPIRFVRFRAPHHDRVVVICPGRIESYVKY 70 (330)
T ss_pred HHHHhhc-cceEEEcCCCCEEEEEEccCCCCCcEEEEECCccchHHHH
Confidence 4688544 44444556776443332221 3456788999998776544
No 133
>cd03422 YedF YedF is a bacterial SirA-like protein of unknown function. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=22.17 E-value=81 Score=20.97 Aligned_cols=42 Identities=17% Similarity=0.043 Sum_probs=25.7
Q ss_pred CcchhhhccCCCcCCCHHHHHhhcCCceeEEEEecCCCcEEEE
Q psy17378 19 GEVLEDMLNRRSFTTLKPEIISFWGYPSEEHKVQTEDGYILTN 61 (181)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~i~~~gy~~e~h~v~T~DGyiL~l 61 (181)
|+.++=..+.+.....++..++..||.+....- +.+.|.+.+
T Consensus 26 G~~l~V~~d~~~s~~ni~~~~~~~g~~v~~~~~-~~~~~~~~i 67 (69)
T cd03422 26 GEILEVISDCPQSINNIPIDARNHGYKVLAIEQ-SGPTIRYLI 67 (69)
T ss_pred CCEEEEEecCchHHHHHHHHHHHcCCEEEEEEe-cCCEEEEEE
Confidence 333444455555555678899999999875432 344555544
No 134
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=21.69 E-value=85 Score=21.80 Aligned_cols=46 Identities=20% Similarity=0.261 Sum_probs=28.6
Q ss_pred ceeEEEEEEeeCcchhhhccCCCcCCCHHHHHhhcCCceeEEEEec
Q psy17378 8 TKGKFSFAMVRGEVLEDMLNRRSFTTLKPEIISFWGYPSEEHKVQT 53 (181)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~gy~~e~h~v~T 53 (181)
+++.+-|-+-.|..++......+-....-+.+...||+.+.+.+.|
T Consensus 3 ~~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~~~~~~~f~L~t 48 (80)
T cd01771 3 PISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASKGYPIDEYKLLS 48 (80)
T ss_pred CeEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCCCCCCEEEec
Confidence 3455666666777766666665544445666777788766555443
No 135
>cd03423 SirA SirA (also known as UvrY, and YhhP) belongs to a family of two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is thought to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.
Probab=20.97 E-value=1.2e+02 Score=20.12 Aligned_cols=30 Identities=20% Similarity=0.150 Sum_probs=20.1
Q ss_pred hhhhccCCCcCCCHHHHHhhcCCceeEEEE
Q psy17378 22 LEDMLNRRSFTTLKPEIISFWGYPSEEHKV 51 (181)
Q Consensus 22 ~~~~~~~~~~~~~~~~~i~~~gy~~e~h~v 51 (181)
++=..+.+.....++..++..||.+....-
T Consensus 29 l~V~~dd~~s~~di~~~~~~~g~~~~~~~~ 58 (69)
T cd03423 29 LLVLATDPSTTRDIPKFCTFLGHELLAQET 58 (69)
T ss_pred EEEEeCCCchHHHHHHHHHHcCCEEEEEEE
Confidence 333444444445678899999999876543
No 136
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=20.68 E-value=1.5e+02 Score=25.30 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=24.1
Q ss_pred CCccceeeeCCCcceEEEEec-CC--CCCCcEEEEeecccccccc
Q psy17378 127 YPSEEHKVQTEDGYILTNFRM-PN--PGGYPIIMFHGLSVSSDCW 168 (181)
Q Consensus 127 ys~de~avyDld~yIl~i~rI-~~--~~~~~vll~HGl~~~s~~w 168 (181)
+..++....+.+|.-+..+.. +. ..+.++++.||+..++..|
T Consensus 59 ~~~~~~~~~~~~g~~l~~~~~~p~~~~~~~~iv~lHG~~~~~~~~ 103 (349)
T PLN02385 59 IKTEESYEVNSRGVEIFSKSWLPENSRPKAAVCFCHGYGDTCTFF 103 (349)
T ss_pred cceeeeeEEcCCCCEEEEEEEecCCCCCCeEEEEECCCCCccchH
Confidence 334455556667764443332 22 2345588999998776543
Done!