RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy17378
(181 letters)
>gnl|CDD|217881 pfam04083, Abhydro_lipase, Partial alpha/beta-hydrolase lipase
region. This family corresponds to a N-terminal part
of an alpha/beta hydrolase domain.
Length = 62
Score = 74.9 bits (185), Expect = 1e-18
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 36 PEIISFWGYPSEEHKVQTEDGYILTNFRMPNPG-------GYPIIMFHGLSVSSDCWLL 87
E+I +GYP EEH+V TEDGYILT R+P +++ HGL SS W+L
Sbjct: 2 SELIRKYGYPVEEHEVTTEDGYILTLHRIPPGRNNRGRGKKPVVLLQHGLLASSADWVL 60
Score = 74.9 bits (185), Expect = 1e-18
Identities = 26/59 (44%), Positives = 34/59 (57%), Gaps = 7/59 (11%)
Query: 119 PEIISFWGYPSEEHKVQTEDGYILTNFRMPNPG-------GYPIIMFHGLSVSSDCWLL 170
E+I +GYP EEH+V TEDGYILT R+P +++ HGL SS W+L
Sbjct: 2 SELIRKYGYPVEEHEVTTEDGYILTLHRIPPGRNNRGRGKKPVVLLQHGLLASSADWVL 60
>gnl|CDD|215470 PLN02872, PLN02872, triacylglycerol lipase.
Length = 395
Score = 57.2 bits (138), Expect = 5e-10
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 8/78 (10%)
Query: 26 LNRRS-FTTLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPG-------GYPIIMFHG 77
L RRS +L ++I GY EH +QT+DGY+L R+ + G P+++ HG
Sbjct: 23 LLRRSPVESLCAQLIHPAGYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHG 82
Query: 78 LSVSSDCWLLRNPKEDFG 95
L ++ D W L +P++ G
Sbjct: 83 LFMAGDAWFLNSPEQSLG 100
Score = 47.9 bits (114), Expect = 6e-07
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 7/52 (13%)
Query: 126 GYPSEEHKVQTEDGYILTNFRMPNPG-------GYPIIMFHGLSVSSDCWLL 170
GY EH +QT+DGY+L R+ + G P+++ HGL ++ D W L
Sbjct: 41 GYSCTEHTIQTKDGYLLALQRVSSRNPRLGSQRGPPVLLQHGLFMAGDAWFL 92
Score = 26.4 bits (58), Expect = 8.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Query: 92 EDFGKSDFIVKEGSLLDVFEGFISFFQ 118
E++G DF++ + DV+ I FF+
Sbjct: 361 ENYGHIDFLLSTSAKEDVYNHMIQFFR 387
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 31.9 bits (73), Expect = 0.18
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 3/26 (11%)
Query: 154 PIIMFHGLSVSSDCWLLRYEVNSYAR 179
P+ FHGLSV DC + +++ NS AR
Sbjct: 232 PLYEFHGLSV--DC-IDKHQPNSEAR 254
Score = 28.1 bits (63), Expect = 3.1
Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 2/14 (14%)
Query: 71 PIIMFHGLSVSSDC 84
P+ FHGLSV DC
Sbjct: 232 PLYEFHGLSV--DC 243
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family
of proteins contains FAD dependent oxidoreductases and
related proteins.
Length = 415
Score = 31.0 bits (71), Expect = 0.35
Identities = 15/50 (30%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 23 EDMLNRRSFTTLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPI 72
ED+L+ R F P+ I+ YP + H R P G Y I
Sbjct: 301 EDVLSGRRF----PDSIARGAYPIDLHNPGRIPVANEGGVRWPGTGPYQI 346
>gnl|CDD|237072 PRK12355, PRK12355, conjugal transfer mating pair stabilization
protein TraN; Reviewed.
Length = 558
Score = 29.8 bits (67), Expect = 0.94
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 149 NPGGYPIIMFHGLSVSSDCWLLRYE 173
PGG + +G+ V+ DCW Y+
Sbjct: 284 EPGGTRTRVINGIPVTRDCW--AYQ 306
Score = 29.4 bits (66), Expect = 1.1
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 66 NPGGYPIIMFHGLSVSSDCW 85
PGG + +G+ V+ DCW
Sbjct: 284 EPGGTRTRVINGIPVTRDCW 303
>gnl|CDD|225922 COG3387, SGA1, Glucoamylase and related glycosyl hydrolases
[Carbohydrate transport and metabolism].
Length = 612
Score = 29.3 bits (66), Expect = 1.2
Identities = 26/145 (17%), Positives = 39/145 (26%), Gaps = 21/145 (14%)
Query: 31 FTTLK--PEIISFWGYPSEEHKVQTEDGYILTN-----FRMPNPGGYPIIMFHGLSVSSD 83
FT + F YP + V + L N F N + + +D
Sbjct: 51 FTAILDDDTAGYFSIYPDGAYIVVKDFYDGLYNILIRIFTDENG---KSRLLKVDFMPND 107
Query: 84 CWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGYPSEEHKVQTEDGYILT 143
L + G D I + + G FF W S ED + T
Sbjct: 108 YELGETALYNPGSEDIIRYKSGRYLLASGLKPFFDYASSKPWISKSTGFWKDLEDKGLST 167
Query: 144 NFRMPNPGGYPIIMFHGLSVSSDCW 168
N + G S+ +
Sbjct: 168 NP-----------IADGNVDSAGGY 181
>gnl|CDD|225577 COG3034, COG3034, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 298
Score = 28.9 bits (65), Expect = 1.2
Identities = 24/109 (22%), Positives = 35/109 (32%), Gaps = 34/109 (31%)
Query: 2 KIRINKTKGKFSFAMVRGEVLEDMLNRRSFTTLKPEIISFWGYP----SEEHKVQTEDGY 57
+RI K + K E+ E N L+ I W E ++T +G+
Sbjct: 54 LVRIFKEERKL-------ELYEKDGNIYKL--LRSYKICLWSGKLGPKQREGDLKTPEGF 104
Query: 58 ILTNFRMPNPG---------GYP------------IIMFHGLSVSSDCW 85
+ NP GYP IM HG +S C+
Sbjct: 105 YRLTRKQLNPDSYYYLSINIGYPNAYDKALGRTGGGIMIHGACLSDGCY 153
>gnl|CDD|217457 pfam03255, ACCA, Acetyl co-enzyme A carboxylase carboxyltransferase
alpha subunit. Acetyl co-enzyme A carboxylase
carboxyltransferase is composed of an alpha and beta
subunit.
Length = 145
Score = 27.6 bits (62), Expect = 2.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 58 ILTNFRMPNPGGY 70
+L NF MP P GY
Sbjct: 122 LLRNFGMPAPEGY 134
Score = 27.6 bits (62), Expect = 2.1
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 141 ILTNFRMPNPGGY 153
+L NF MP P GY
Sbjct: 122 LLRNFGMPAPEGY 134
>gnl|CDD|235580 PRK05724, PRK05724, acetyl-CoA carboxylase carboxyltransferase
subunit alpha; Validated.
Length = 319
Score = 28.2 bits (64), Expect = 2.2
Identities = 11/30 (36%), Positives = 11/30 (36%), Gaps = 15/30 (50%)
Query: 61 NFRMPNPGGY---------------PIIMF 75
NF MP P GY PII F
Sbjct: 128 NFGMPRPEGYRKALRLMKMAEKFGLPIITF 157
Score = 28.2 bits (64), Expect = 2.2
Identities = 11/30 (36%), Positives = 11/30 (36%), Gaps = 15/30 (50%)
Query: 144 NFRMPNPGGY---------------PIIMF 158
NF MP P GY PII F
Sbjct: 128 NFGMPRPEGYRKALRLMKMAEKFGLPIITF 157
>gnl|CDD|214006 cd12807, Esterase_713, Novel bacterial esterase 713 that cleaves
esters on halogenated cyclic compounds. This family
contains proteins similar to a novel bacterial esterase
(esterase 713) with the alpha/beta hydrolase fold that
cleaves esters on halogenated cyclic compounds. This
Alcaligenes esterase, however, does not contain the
GXSXXG pentapeptide around the active site serine
residue as seen in other esterase families. This enzyme
is active as a dimer though its natural substrate is
unknown. It has two distinct disulfide bridges; one
formed between adjacent cysteines appears to facilitate
the correct formation of the oxyanion cleft in the
catalytic site. Esterase 713 also resembles human
pancreatic lipase in its location of the acidic residue
of the catalytic triad. It is possibly exported from
the cytosol to the periplasmic space. A large majority
of sequences in this family have yet to be
characterized.
Length = 315
Score = 27.7 bits (62), Expect = 3.8
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 62 FRMP--NPGGYPIIMFHGLSVSSDCW 85
+++P YPI++ HG ++ W
Sbjct: 44 YQIPQKGKKKYPIVLVHGCCLTGKTW 69
Score = 27.7 bits (62), Expect = 3.8
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 145 FRMP--NPGGYPIIMFHGLSVSSDCW 168
+++P YPI++ HG ++ W
Sbjct: 44 YQIPQKGKKKYPIVLVHGCCLTGKTW 69
>gnl|CDD|233004 TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase,
alpha subunit. The enzyme acetyl-CoA carboxylase
contains a biotin carboxyl carrier protein or domain, a
biotin carboxylase, and a carboxyl transferase. This
model represents the alpha chain of the carboxyl
transferase for cases in which the architecture of the
protein is as in E. coli, in which the
carboxyltransferase portion consists of two
non-identical subnits, alpha and beta [Fatty acid and
phospholipid metabolism, Biosynthesis].
Length = 316
Score = 27.1 bits (60), Expect = 5.5
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 15/33 (45%)
Query: 58 ILTNFRMPNPGGY---------------PIIMF 75
+ NF MP P GY PII F
Sbjct: 125 LRRNFGMPAPEGYRKALRLMKMAERFKMPIITF 157
Score = 27.1 bits (60), Expect = 5.5
Identities = 11/33 (33%), Positives = 12/33 (36%), Gaps = 15/33 (45%)
Query: 141 ILTNFRMPNPGGY---------------PIIMF 158
+ NF MP P GY PII F
Sbjct: 125 LRRNFGMPAPEGYRKALRLMKMAERFKMPIITF 157
>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain
acyl-CoA synthetase (MACS). MACS catalyzes the two-step
activation of medium chain fatty acids (containing 4-12
carbons). The carboxylate substrate first reacts with
ATP to form an acyl-adenylate intermediate, which then
reacts with CoA to produce an acyl-CoA ester. MACS
enzymes are localized to mitochondria.
Length = 440
Score = 26.6 bits (59), Expect = 8.4
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Query: 33 TLKPEIISF----WGYPSEEHKVQTEDGYILTNF 62
L PE++ + G +H QTE G + N
Sbjct: 216 PLNPEVVRWFQANLGVTIHDHYGQTETGMPVGNH 249
>gnl|CDD|133201 cd05070, PTKc_Fyn_Yrk, Catalytic domain of the Protein Tyrosine
Kinases, Fyn and Yrk. Protein Tyrosine Kinase (PTK)
family; Fyn and Yrk kinases; catalytic (c) domain. The
PTKc family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
protein serine/threonine kinases, RIO kinases, and
phosphoinositide 3-kinase (PI3K). PTKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
tyrosine (tyr) residues in protein substrates. Fyn and
Yrk are members of the Src subfamily of proteins, which
are cytoplasmic (or non-receptor) tyr kinases. Src
kinases contain an N-terminal SH4 domain with a
myristoylation site, followed by SH3 and SH2 domains, a
tyr kinase domain, and a regulatory C-terminal region
containing a conserved tyr. They are activated by
autophosphorylation at the tyr kinase domain, but are
negatively regulated by phosphorylation at the
C-terminal tyr by Csk (C-terminal Src Kinase). Src
proteins are involved in signaling pathways that
regulate cytokine and growth factor responses,
cytoskeleton dynamics, cell proliferation, survival, and
differentiation. Fyn, together with Lck, plays a
critical role in T-cell signal transduction by
phosphorylating ITAM (immunoreceptor tyr activation
motif) sequences on T-cell receptors, ultimately leading
to the proliferation and differentiation of T-cells. In
addition, Fyn is involved in the myelination of neurons,
and is implicated in Alzheimer's and Parkinson's
diseases. Yrk has been detected only in chickens. It is
primarily found in neuronal and epithelial cells and in
macrophages. It may play a role in inflammation and in
response to injury.
Length = 260
Score = 26.5 bits (58), Expect = 8.4
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 14/68 (20%)
Query: 30 SFTTLKPEIIS-----FWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDC 84
SF L E+++ + G + E Q E GY RMP P PI + H L + C
Sbjct: 188 SFGILLTELVTKGRVPYPGMNNREVLEQVERGY-----RMPCPQDCPISL-HELMLQ--C 239
Query: 85 WLLRNPKE 92
W ++P+E
Sbjct: 240 W-KKDPEE 246
>gnl|CDD|214393 CHL00198, accA, acetyl-CoA carboxylase carboxyltransferase alpha
subunit; Provisional.
Length = 322
Score = 26.3 bits (58), Expect = 9.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 58 ILTNFRMPNPGGY 70
+L NF MP+PGGY
Sbjct: 128 VLRNFGMPSPGGY 140
Score = 26.3 bits (58), Expect = 9.4
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 141 ILTNFRMPNPGGY 153
+L NF MP+PGGY
Sbjct: 128 VLRNFGMPSPGGY 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.142 0.448
Gapped
Lambda K H
0.267 0.0799 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,586,988
Number of extensions: 898003
Number of successful extensions: 799
Number of sequences better than 10.0: 1
Number of HSP's gapped: 795
Number of HSP's successfully gapped: 39
Length of query: 181
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 90
Effective length of database: 6,901,388
Effective search space: 621124920
Effective search space used: 621124920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.2 bits)