RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy17378
(181 letters)
>1k8q_A Triacylglycerol lipase, gastric; APHA beta hydrolase fold,
hydrolase; HET: NAG BOG C11; 2.70A {Canis lupus
familiaris} SCOP: c.69.1.6 PDB: 1hlg_A*
Length = 377
Score = 73.1 bits (179), Expect = 8e-16
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 8/68 (11%)
Query: 36 PEIISFWGYPSEEHKVQTEDGYILTNFRMPNP--------GGYPIIMFHGLSVSSDCWLL 87
++I++WGYP+EE++V TEDGYIL R+P + HGL S+ W+
Sbjct: 17 SQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWIS 76
Query: 88 RNPKEDFG 95
P
Sbjct: 77 NLPNNSLA 84
Score = 72.7 bits (178), Expect = 9e-16
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 119 PEIISFWGYPSEEHKVQTEDGYILTNFRMPNP--------GGYPIIMFHGLSVSSDCWLL 170
++I++WGYP+EE++V TEDGYIL R+P + HGL S+ W+
Sbjct: 17 SQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWIS 76
Query: 171 RYEVNSYARLL 181
NS A +L
Sbjct: 77 NLPNNSLAFIL 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.9 bits (77), Expect = 0.027
Identities = 14/62 (22%), Positives = 22/62 (35%), Gaps = 17/62 (27%)
Query: 71 PIIMFHG-----LSVSSDCWL----LR--------NPKEDFGKSDFIVKEGSLLDVFEGF 113
P+ + HG L V + + L+ P E F D L+ F G+
Sbjct: 8 PLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLGY 67
Query: 114 IS 115
+S
Sbjct: 68 VS 69
>2r11_A Carboxylesterase NP; 2632844, putative hydrolase, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE PGE; 1.96A {Bacillus subtilis}
Length = 306
Score = 31.9 bits (73), Expect = 0.079
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 37 EIISFWGYPSEEHKVQTEDG---YILTNFRMPNPGGYPIIMFHGLSVSSDCW 85
E +S W + + T G I + P+++ HG SS W
Sbjct: 36 ESLSLWPVRCKSFYISTRFGQTHVIASG----PEDAPPLVLLHGALFSSTMW 83
Score = 31.9 bits (73), Expect = 0.079
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 7/52 (13%)
Query: 120 EIISFWGYPSEEHKVQTEDG---YILTNFRMPNPGGYPIIMFHGLSVSSDCW 168
E +S W + + T G I + P+++ HG SS W
Sbjct: 36 ESLSLWPVRCKSFYISTRFGQTHVIASG----PEDAPPLVLLHGALFSSTMW 83
>2x5x_A PHB depolymerase PHAZ7; biopolymers, oxyanion HOLE, hydrolase,
biodegradation, catal; HET: PG4; 1.20A {Paucimonas
lemoignei} PDB: 2vtv_A* 2x76_A
Length = 342
Score = 31.4 bits (70), Expect = 0.13
Identities = 7/63 (11%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 43 GYPSEEHKVQTEDGYILT------NFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGK 96
G+ + + Q G+ P+I HG ++ + +
Sbjct: 8 GFVCKGTQTQYAGGFAPGVGYGGFGGGSCTATKTPVIFIHGNGDNAISFDMPPGNVSGYG 67
Query: 97 SDF 99
+
Sbjct: 68 TPA 70
Score = 30.7 bits (68), Expect = 0.28
Identities = 7/49 (14%), Positives = 15/49 (30%), Gaps = 6/49 (12%)
Query: 126 GYPSEEHKVQTEDGYILT------NFRMPNPGGYPIIMFHGLSVSSDCW 168
G+ + + Q G+ P+I HG ++ +
Sbjct: 8 GFVCKGTQTQYAGGFAPGVGYGGFGGGSCTATKTPVIFIHGNGDNAISF 56
>1tca_A Lipase; hydrolase(carboxylic esterase); HET: NAG; 1.55A {Candida
antarctica} SCOP: c.69.1.17 PDB: 1lbs_A* 1lbt_A* 1tcb_A*
1tcc_A*
Length = 317
Score = 30.9 bits (69), Expect = 0.21
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 65 PNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIV 101
P+ PI++ G + N + +
Sbjct: 27 PSSVSKPILLVPGTGTTGPQSFDSNWIPLSTQLGYTP 63
Score = 30.9 bits (69), Expect = 0.22
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 148 PNPGGYPIIMFHGLSVSSDCWLLRYEVNSYARLL 181
P+ PI++ G + +++ L
Sbjct: 27 PSSVSKPILLVPGTGTTGPQSF----DSNWIPLS 56
>3icv_A Lipase B, CALB; circular permutation, cleavage on PAIR of basic
residues, glycoprotein, hydrolase, lipid degradation,
zymogen, disulf; HET: NAG BTB; 1.49A {Candida
antarctica} PDB: 3icw_A*
Length = 316
Score = 29.4 bits (65), Expect = 0.54
Identities = 5/34 (14%), Positives = 11/34 (32%), Gaps = 4/34 (11%)
Query: 148 PNPGGYPIIMFHGLSVSSDCWLLRYEVNSYARLL 181
P+ PI++ G + ++ L
Sbjct: 61 PSSVSKPILLVPGTGTTGPQSFDS----NWIPLS 90
Score = 29.4 bits (65), Expect = 0.59
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 65 PNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIV 101
P+ PI++ G + N + +
Sbjct: 61 PSSVSKPILLVPGTGTTGPQSFDSNWIPLSAQLGYTP 97
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer,
leukemia, transferase, ATP-binding, proto- oncogene,
phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Length = 312
Score = 29.2 bits (66), Expect = 0.66
Identities = 10/35 (28%), Positives = 13/35 (37%), Gaps = 2/35 (5%)
Query: 93 DFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGY 127
DFG + F+G + PE IS Y
Sbjct: 183 DFGSGALL--HDEPYTDFDGTRVYSPPEWISRHQY 215
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1,
peptide drug, prostate cancer, transferase; HET: ANP;
1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A*
3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A*
2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A*
3cxw_A* 3cy3_A* 2bik_B* ...
Length = 320
Score = 28.5 bits (64), Expect = 1.1
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 2/35 (5%)
Query: 93 DFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGY 127
DFG + + ++ F+G + PE I + Y
Sbjct: 193 DFGSGALL--KDTVYTDFDGTRVYSPPEWIRYHRY 225
>1a88_A Chloroperoxidase L; haloperoxidase, oxidoreductase; 1.90A
{Streptomyces lividans} SCOP: c.69.1.12
Length = 275
Score = 28.4 bits (64), Expect = 1.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 66 NPGGYPIIMFHGLSVSSDCW 85
G P++ HG +S+D W
Sbjct: 18 PRDGLPVVFHHGWPLSADDW 37
Score = 28.4 bits (64), Expect = 1.2
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 149 NPGGYPIIMFHGLSVSSDCW 168
G P++ HG +S+D W
Sbjct: 18 PRDGLPVVFHHGWPLSADDW 37
>1zoi_A Esterase; alpha/beta hydrolase fold; 1.60A {Pseudomonas putida}
PDB: 4dgq_A
Length = 276
Score = 28.0 bits (63), Expect = 1.5
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 51 VQTEDG----YILTNFRMPNPGGYPIIMFHGLSVSSDCW 85
V T+DG Y I HG +S+D W
Sbjct: 4 VTTKDGVQIFYKDWG----PRDAPVIHFHHGWPLSADDW 38
Score = 28.0 bits (63), Expect = 1.5
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 8/39 (20%)
Query: 134 VQTEDG----YILTNFRMPNPGGYPIIMFHGLSVSSDCW 168
V T+DG Y I HG +S+D W
Sbjct: 4 VTTKDGVQIFYKDWG----PRDAPVIHFHHGWPLSADDW 38
>2y6u_A Peroxisomal membrane protein LPX1; hydrolase, putative esterase,
putative lipase; HET: CME CSO; 1.90A {Saccharomyces
cerevisiae} PDB: 2y6v_A*
Length = 398
Score = 28.2 bits (62), Expect = 1.6
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 2/47 (4%)
Query: 65 PNPGGYPIIMFHGLSVSSDCW--LLRNPKEDFGKSDFIVKEGSLLDV 109
++ HG +S W L + ++ + + L+D
Sbjct: 48 RTATRLNLVFLHGSGMSKVVWEYYLPRLVAADAEGNYAIDKVLLIDQ 94
Score = 27.4 bits (60), Expect = 2.7
Identities = 4/21 (19%), Positives = 7/21 (33%)
Query: 148 PNPGGYPIIMFHGLSVSSDCW 168
++ HG +S W
Sbjct: 48 RTATRLNLVFLHGSGMSKVVW 68
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.3 bits (62), Expect = 1.8
Identities = 22/137 (16%), Positives = 40/137 (29%), Gaps = 42/137 (30%)
Query: 43 GYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFH--GLSVSSDCWLLRNPKEDFGKSDFI 100
+ S++ D Y Y I H + L R DF F+
Sbjct: 458 TFDSDDLIPPYLDQYF-----------YSHIGHHLKNIEHPERMTLFRMVFLDF---RFL 503
Query: 101 -VK----------EGSLLDV------FEGFISFFQPE-------IISFWGYPSEEHKVQT 136
K GS+L+ ++ +I P+ I+ F EE+ + +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKI-EENLICS 562
Query: 137 EDGYILTNFRMPNPGGY 153
+ +L +
Sbjct: 563 KYTDLL-RIALMAEDEA 578
>3p2m_A Possible hydrolase; alpha/beta hydrolase superfamily; 2.80A
{Mycobacterium tuberculosis}
Length = 330
Score = 27.4 bits (61), Expect = 2.8
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 2/71 (2%)
Query: 15 AMVRGEVLEDMLNRRSFTTLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIM 74
M R +++ F L E G +V+ ++ R +I
Sbjct: 29 QMGRVLSDDELTGLDEFALL-AENAEQAGVNGPLPEVERVQAGAISALRWGGSAP-RVIF 86
Query: 75 FHGLSVSSDCW 85
HG ++ W
Sbjct: 87 LHGGGQNAHTW 97
Score = 27.4 bits (61), Expect = 2.9
Identities = 8/50 (16%), Positives = 15/50 (30%), Gaps = 1/50 (2%)
Query: 119 PEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCW 168
E G +V+ ++ R +I HG ++ W
Sbjct: 49 AENAEQAGVNGPLPEVERVQAGAISALRWGGSAP-RVIFLHGGGQNAHTW 97
>1a8s_A Chloroperoxidase F; haloperoxidase, oxidoreductase, propionate
complex; 1.80A {Pseudomonas fluorescens} SCOP:
c.69.1.12
Length = 273
Score = 27.3 bits (61), Expect = 2.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G PI+ HG +++D W
Sbjct: 19 GQPIVFSHGWPLNADSW 35
Score = 27.3 bits (61), Expect = 2.9
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G PI+ HG +++D W
Sbjct: 19 GQPIVFSHGWPLNADSW 35
>2zyr_A Lipase, putative; fatty acid, hydrolase; HET: 1PE; 1.77A
{Archaeoglobus fulgidus} PDB: 2zys_A* 2zyi_A* 2zyh_A*
Length = 484
Score = 27.2 bits (59), Expect = 3.3
Identities = 8/37 (21%), Positives = 14/37 (37%), Gaps = 3/37 (8%)
Query: 146 RMPNPGGYPIIMFHGLSVSSDCWLL---RYEVNSYAR 179
P++ HGL+ S+ + R+ N Y
Sbjct: 16 VAAAEDFRPVVFVHGLAGSAGQFESQGMRFAANGYPA 52
Score = 27.2 bits (59), Expect = 4.0
Identities = 5/23 (21%), Positives = 10/23 (43%)
Query: 63 RMPNPGGYPIIMFHGLSVSSDCW 85
P++ HGL+ S+ +
Sbjct: 16 VAAAEDFRPVVFVHGLAGSAGQF 38
>3ia2_A Arylesterase; alpha-beta hydrolase fold, transition state analog,
hydrolas oxidoreductase, peroxidase; 1.65A {Pseudomonas
fluorescens} PDB: 1va4_A 3hi4_A 3hea_A
Length = 271
Score = 26.9 bits (60), Expect = 3.5
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G P++ HG + +D W
Sbjct: 19 GKPVLFSHGWLLDADMW 35
Score = 26.9 bits (60), Expect = 3.5
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G P++ HG + +D W
Sbjct: 19 GKPVLFSHGWLLDADMW 35
>1hkh_A Gamma lactamase; hydrolase, alpha/beta hydrolase, CO-factor free
haloperoxidase,; 1.73A {Microbacterium} SCOP: c.69.1.12
PDB: 1hl7_A*
Length = 279
Score = 27.0 bits (60), Expect = 3.8
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G P+++ HG + W
Sbjct: 23 GQPVVLIHGYPLDGHSW 39
Score = 27.0 bits (60), Expect = 3.8
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G P+++ HG + W
Sbjct: 23 GQPVVLIHGYPLDGHSW 39
>1a8q_A Bromoperoxidase A1; haloperoxidase, oxidoreductase; 1.75A
{Streptomyces aureofaciens} SCOP: c.69.1.12
Length = 274
Score = 26.9 bits (60), Expect = 3.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G P++ HG ++ D W
Sbjct: 19 GRPVVFIHGWPLNGDAW 35
Score = 26.9 bits (60), Expect = 3.9
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G P++ HG ++ D W
Sbjct: 19 GRPVVFIHGWPLNGDAW 35
>3fob_A Bromoperoxidase; structural genomics, IDP00046, bacillus ANT
peroxidase, oxidoreductase; 1.74A {Bacillus anthracis
str}
Length = 281
Score = 27.0 bits (60), Expect = 4.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G P+++ HG +S W
Sbjct: 27 GKPVVLIHGWPLSGRSW 43
Score = 27.0 bits (60), Expect = 4.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G P+++ HG +S W
Sbjct: 27 GKPVVLIHGWPLSGRSW 43
>2qmq_A Protein NDRG2, protein NDR2; alpha/beta-hydrolases fold, NDR
family, developmental protei differentiation,
neurogenesis, phosphorylation; HET: 2PE; 1.70A {Mus
musculus} PDB: 2xmq_A 2xmr_A 2xms_A
Length = 286
Score = 26.6 bits (58), Expect = 4.4
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 47 EEHKVQTEDGYILTNFRMPNPGGYPIIMF-HGLSVSSDCW 85
H V+T G + P I H + ++
Sbjct: 12 HTHSVETPYGSVTFTVYGTPKPKRPAIFTYHDVGLNYKSC 51
Score = 26.6 bits (58), Expect = 4.4
Identities = 7/40 (17%), Positives = 12/40 (30%), Gaps = 1/40 (2%)
Query: 130 EEHKVQTEDGYILTNFRMPNPGGYPIIMF-HGLSVSSDCW 168
H V+T G + P I H + ++
Sbjct: 12 HTHSVETPYGSVTFTVYGTPKPKRPAIFTYHDVGLNYKSC 51
>1imj_A CIB, CCG1-interacting factor B; alpha/beta hydrolase, CCG1
interactor; 2.20A {Homo sapiens} SCOP: c.69.1.23
Length = 210
Score = 26.4 bits (58), Expect = 4.5
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 65 PNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDF 99
+ +++ HG+ SS+ W ++ +
Sbjct: 28 SGQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGY 62
Score = 26.0 bits (57), Expect = 7.0
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 148 PNPGGYPIIMFHGLSVSSDCW 168
+ +++ HG+ SS+ W
Sbjct: 28 SGQARFSVLLLHGIRFSSETW 48
>3vdx_A Designed 16NM tetrahedral protein CAGE containing bromoperoxidase
BPO-A2 and matrix...; protein design,
bionanotechnology; 3.00A {Streptomyces aureofaciens}
PDB: 4d9j_A
Length = 456
Score = 26.3 bits (58), Expect = 6.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G P+++ HG +S W
Sbjct: 24 GVPVVLIHGFPLSGHSW 40
Score = 26.3 bits (58), Expect = 6.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G P+++ HG +S W
Sbjct: 24 GVPVVLIHGFPLSGHSW 40
>1pj3_A NAD-dependent malic enzyme, mitochondrial; oxidative decarboxylase,
oxidoreductase; HET: NAD; 2.10A {Homo sapiens} SCOP:
c.2.1.7 c.58.1.3 PDB: 1pj2_A* 1do8_A* 1pj4_A* 1qr6_A*
1efl_A* 1pjl_A* 1efk_A* 1gz4_A* 1gz3_A*
Length = 564
Score = 26.6 bits (59), Expect = 6.5
Identities = 10/40 (25%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 72 IIMF--HGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDV 109
I MF +GL V + + +E F S + D
Sbjct: 321 IWMFDKYGLLVKGRKAKIDSYQEPFTHSAPESIPDTFEDA 360
>1m33_A BIOH protein; alpha-betta-alpha sandwich, structural genomics,
PSI, protei structure initiative; HET: MSE 3OH; 1.70A
{Escherichia coli} SCOP: c.69.1.26
Length = 258
Score = 26.1 bits (58), Expect = 6.5
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 67 PGGYPIIMFHGLSVSSDCW 85
G +++ HG ++++ W
Sbjct: 11 QGNVHLVLLHGWGLNAEVW 29
Score = 26.1 bits (58), Expect = 6.5
Identities = 4/19 (21%), Positives = 11/19 (57%)
Query: 150 PGGYPIIMFHGLSVSSDCW 168
G +++ HG ++++ W
Sbjct: 11 QGNVHLVLLHGWGLNAEVW 29
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase,
PASK, protein kinase, drug discovery, ATP-bindin kinase,
nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Length = 335
Score = 26.2 bits (58), Expect = 6.6
Identities = 11/35 (31%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 93 DFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGY 127
DFG + ++ + G L F G I + PE++ Y
Sbjct: 173 DFGSAAYL-ERGKLFYTFCGTIEYCAPEVLMGNPY 206
>1u2e_A 2-hydroxy-6-ketonona-2,4-dienedioic acid hydrolase; alpha/beta
hydrolase fold; 2.10A {Escherichia coli}
Length = 289
Score = 26.1 bits (58), Expect = 7.2
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 45 PSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWL 86
S V+ + +F G +++ HG + W
Sbjct: 12 TSRFLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWA 53
Score = 26.1 bits (58), Expect = 7.2
Identities = 7/42 (16%), Positives = 14/42 (33%)
Query: 128 PSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWL 169
S V+ + +F G +++ HG + W
Sbjct: 12 TSRFLNVEEAGKTLRIHFNDCGQGDETVVLLHGSGPGATGWA 53
>1brt_A Bromoperoxidase A2; haloperoxidase, oxidoreductase, alpha/beta
hydrolase fold, mutant M99T; 1.50A {Streptomyces
aureofaciens} SCOP: c.69.1.12 PDB: 1bro_A 1a8u_A 1a7u_A
Length = 277
Score = 25.7 bits (57), Expect = 8.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G P+++ HG +S W
Sbjct: 23 GQPVVLIHGFPLSGHSW 39
Score = 25.7 bits (57), Expect = 8.6
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G P+++ HG +S W
Sbjct: 23 GQPVVLIHGFPLSGHSW 39
>1ex9_A Lactonizing lipase; alpha-beta hydrolase fold, phosphonate
inhibitor; HET: OCP; 2.54A {Pseudomonas aeruginosa}
SCOP: c.69.1.18
Length = 285
Score = 25.8 bits (56), Expect = 8.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 153 YPIIMFHGLSVSSDCWLLRY 172
YPI++ HG+ + + Y
Sbjct: 8 YPIVLAHGMLGFDNILGVDY 27
>3bf7_A Esterase YBFF; thioesterase, helical CAP, hydrolase; 1.10A
{Escherichia coli} PDB: 3bf8_A
Length = 255
Score = 25.8 bits (57), Expect = 9.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 69 GYPIIMFHGLSVSSDCW 85
PI++ HGL S D
Sbjct: 16 NSPIVLVHGLFGSLDNL 32
Score = 25.8 bits (57), Expect = 9.0
Identities = 7/17 (41%), Positives = 9/17 (52%)
Query: 152 GYPIIMFHGLSVSSDCW 168
PI++ HGL S D
Sbjct: 16 NSPIVLVHGLFGSLDNL 32
>1ky9_A Protease DO, DEGP, HTRA; protein quality control, serine protease,
trypsin, chaperone, PDZ, ATP-independent,
temperature-regulated, periplasm; 2.80A {Escherichia
coli} SCOP: b.36.1.4 b.47.1.1 PDB: 3ou0_A 4a8d_A 3otp_A
3mh7_A 3mh4_A 3mh5_A* 3mh6_A* 3cs0_A 2zle_A
Length = 448
Score = 25.7 bits (57), Expect = 9.1
Identities = 9/66 (13%), Positives = 17/66 (25%), Gaps = 9/66 (13%)
Query: 88 RNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGYPSEEHKVQ---------TED 138
P+ F + F S + ++ K +
Sbjct: 38 NTPRMPRNFQQFFGDDSPFCQEGSPFQSSPFCQGGQGGNGGGQQQKFMALGSGVIIDADK 97
Query: 139 GYILTN 144
GY++TN
Sbjct: 98 GYVVTN 103
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.142 0.448
Gapped
Lambda K H
0.267 0.0634 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,891,688
Number of extensions: 168860
Number of successful extensions: 562
Number of sequences better than 10.0: 1
Number of HSP's gapped: 557
Number of HSP's successfully gapped: 74
Length of query: 181
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 93
Effective length of database: 4,244,745
Effective search space: 394761285
Effective search space used: 394761285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (24.8 bits)