RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy17378
(181 letters)
>d1k8qa_ c.69.1.6 (A:) Gastric lipase {Dog (Canis familiaris)
[TaxId: 9615]}
Length = 377
Score = 74.4 bits (181), Expect = 1e-16
Identities = 26/71 (36%), Positives = 38/71 (53%), Gaps = 8/71 (11%)
Query: 119 PEIISFWGYPSEEHKVQTEDGYILTNFRMPNP--------GGYPIIMFHGLSVSSDCWLL 170
++I++WGYP+EE++V TEDGYIL R+P + HGL S+ W+
Sbjct: 17 SQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWIS 76
Query: 171 RYEVNSYARLL 181
NS A +L
Sbjct: 77 NLPNNSLAFIL 87
Score = 72.0 bits (175), Expect = 7e-16
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 36 PEIISFWGYPSEEHKVQTEDGYILTNFRMPNP--------GGYPIIMFHGLSVSSDCWLL 87
++I++WGYP+EE++V TEDGYIL R+P + HGL S+ W+
Sbjct: 17 SQMITYWGYPAEEYEVVTEDGYILGIDRIPYGRKNSENIGRRPVAFLQHGLLASATNWIS 76
Query: 88 RNPKEDFGK 96
P
Sbjct: 77 NLPNNSLAF 85
>d1azwa_ c.69.1.7 (A:) Proline iminopeptidase {Xanthomonas
campestris, pv. citri [TaxId: 339]}
Length = 313
Score = 35.5 bits (80), Expect = 0.002
Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 5/58 (8%)
Query: 33 TLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNP 90
TL PEI P ++ ++ +D + L + NP G P++M HG +R
Sbjct: 3 TLYPEI-----TPYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHGGPGGGCNDKMRRF 55
Score = 33.2 bits (74), Expect = 0.012
Identities = 11/44 (25%), Positives = 21/44 (47%)
Query: 128 PSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLR 171
P ++ ++ +D + L + NP G P++M HG +R
Sbjct: 10 PYQQGSLKVDDRHTLYFEQCGNPHGKPVVMLHGGPGGGCNDKMR 53
>d1wm1a_ c.69.1.7 (A:) Proline aminopeptidase {Serratia marcescens
[TaxId: 615]}
Length = 313
Score = 35.3 bits (79), Expect = 0.002
Identities = 12/58 (20%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 33 TLKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNP 90
L P + + + T DG+ + NP G P + HG R
Sbjct: 3 GLYPPL-----AAYDSGWLDTGDGHRIYWELSGNPNGKPAVFIHGGPGGGISPHHRQL 55
Score = 33.7 bits (75), Expect = 0.008
Identities = 9/41 (21%), Positives = 14/41 (34%)
Query: 128 PSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCW 168
+ + T DG+ + NP G P + HG
Sbjct: 10 AYDSGWLDTGDGHRIYWELSGNPNGKPAVFIHGGPGGGISP 50
>d1bn7a_ c.69.1.8 (A:) Haloalkane dehalogenase {Rhodococcus sp.
[TaxId: 1831]}
Length = 291
Score = 32.1 bits (71), Expect = 0.031
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 43 GYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCW 85
G+P + H V+ G + + G P++ HG SS W
Sbjct: 4 GFPFDPHYVEV-LGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 45
Score = 32.1 bits (71), Expect = 0.031
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 126 GYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCW 168
G+P + H V+ G + + G P++ HG SS W
Sbjct: 4 GFPFDPHYVEV-LGERMHYVDVGPRDGTPVLFLHGNPTSSYLW 45
>d1qlwa_ c.69.1.15 (A:) A novel bacterial esterase {Alcaligenes
sp. [TaxId: 512]}
Length = 318
Score = 30.6 bits (67), Expect = 0.095
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 62 FRMP-NPGGYPIIMFHGLSVSSDCWL 86
+++P YPI + HG ++ W
Sbjct: 50 YQIPQRAKRYPITLIHGCCLTGMTWE 75
Score = 30.6 bits (67), Expect = 0.095
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 1/26 (3%)
Query: 145 FRMP-NPGGYPIIMFHGLSVSSDCWL 169
+++P YPI + HG ++ W
Sbjct: 50 YQIPQRAKRYPITLIHGCCLTGMTWE 75
>d1a88a_ c.69.1.12 (A:) Chloroperoxidase L {Streptomyces lividans
[TaxId: 1916]}
Length = 275
Score = 30.3 bits (66), Expect = 0.10
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 51 VQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCW 85
V T DG + G P++ HG +S+D W
Sbjct: 3 VTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDW 37
Score = 30.3 bits (66), Expect = 0.10
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 134 VQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCW 168
V T DG + G P++ HG +S+D W
Sbjct: 3 VTTSDGTNIFYKDWGPRDGLPVVFHHGWPLSADDW 37
>d1imja_ c.69.1.23 (A:) Ccg1/TafII250-interacting factor B (Cib)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 208
Score = 28.5 bits (62), Expect = 0.40
Identities = 5/37 (13%), Positives = 14/37 (37%)
Query: 65 PNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIV 101
+ +++ HG+ SS+ W ++ +
Sbjct: 27 SGQARFSVLLLHGIRFSSETWQNLGTLHRLAQAGYRA 63
Score = 27.0 bits (58), Expect = 1.3
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 148 PNPGGYPIIMFHGLSVSSDCW 168
+ +++ HG+ SS+ W
Sbjct: 27 SGQARFSVLLLHGIRFSSETW 47
>d1tcaa_ c.69.1.17 (A:) Triacylglycerol lipase {Yeast (Candida
antarctica), form b [TaxId: 34362]}
Length = 317
Score = 28.5 bits (63), Expect = 0.47
Identities = 5/37 (13%), Positives = 11/37 (29%)
Query: 65 PNPGGYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIV 101
P+ PI++ G + N + +
Sbjct: 27 PSSVSKPILLVPGTGTTGPQSFDSNWIPLSTQLGYTP 63
Score = 27.4 bits (60), Expect = 0.96
Identities = 5/34 (14%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 148 PNPGGYPIIMFHGLSVSSDCWLLRYEVNSYARLL 181
P+ PI++ G + +++ L
Sbjct: 27 PSSVSKPILLVPGTGTTGPQSFD----SNWIPLS 56
>d1q0ra_ c.69.1.28 (A:) Aclacinomycin methylesterase RdmC
{Streptomyces purpurascens [TaxId: 1924]}
Length = 297
Score = 27.6 bits (59), Expect = 1.0
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 66 NPGGYPIIMFHGLSVSSDCW 85
+P +++ G ++S+ W
Sbjct: 19 DPADPALLLVMGGNLSALGW 38
Score = 27.6 bits (59), Expect = 1.0
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 149 NPGGYPIIMFHGLSVSSDCW 168
+P +++ G ++S+ W
Sbjct: 19 DPADPALLLVMGGNLSALGW 38
>d1ex9a_ c.69.1.18 (A:) Lipase {Pseudomonas aeruginosa [TaxId: 287]}
Length = 285
Score = 27.4 bits (60), Expect = 1.1
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 153 YPIIMFHGLSVSSDCWLLRY 172
YPI++ HG+ + + Y
Sbjct: 8 YPIVLAHGMLGFDNILGVDY 27
Score = 26.3 bits (57), Expect = 2.3
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 70 YPIIMFHGLSVSSDCWLLRN 89
YPI++ HG+ + +
Sbjct: 8 YPIVLAHGMLGFDNILGVDY 27
>d1r3da_ c.69.1.35 (A:) Hypothetical protein VC1974 {Vibrio
cholerae [TaxId: 666]}
Length = 264
Score = 27.2 bits (58), Expect = 1.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 62 FRMPNPGGYPIIMFHGLSVSSDCW 85
F P +++ HGL S W
Sbjct: 9 FAKPTARTPLVVLVHGLLGSGADW 32
Score = 27.2 bits (58), Expect = 1.2
Identities = 7/24 (29%), Positives = 10/24 (41%)
Query: 145 FRMPNPGGYPIIMFHGLSVSSDCW 168
F P +++ HGL S W
Sbjct: 9 FAKPTARTPLVVLVHGLLGSGADW 32
>d1xkta_ c.69.1.22 (A:) Fatty acid synthase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 286
Score = 26.7 bits (57), Expect = 1.5
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 51 VQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCW 85
+ +G L P+ + H + S+ +
Sbjct: 7 LVNPEGPTLMRLNSVQSSERPLFLVHPIEGSTTVF 41
Score = 26.7 bits (57), Expect = 1.5
Identities = 5/35 (14%), Positives = 12/35 (34%)
Query: 134 VQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCW 168
+ +G L P+ + H + S+ +
Sbjct: 7 LVNPEGPTLMRLNSVQSSERPLFLVHPIEGSTTVF 41
>d1ispa_ c.69.1.18 (A:) Lipase A {Bacillus subtilis [TaxId: 1423]}
Length = 179
Score = 26.0 bits (56), Expect = 2.6
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 69 GYPIIMFHGLSVSSDCW 85
P++M HG+ +S +
Sbjct: 2 HNPVVMVHGIGGASFNF 18
Score = 26.0 bits (56), Expect = 2.6
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 152 GYPIIMFHGLSVSSDCW 168
P++M HG+ +S +
Sbjct: 2 HNPVVMVHGIGGASFNF 18
>d1trba1 c.3.1.5 (A:1-118,A:245-316) Thioredoxin reductase
{Escherichia coli [TaxId: 562]}
Length = 190
Score = 25.5 bits (55), Expect = 3.4
Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 1/112 (0%)
Query: 34 LKPEIISFWGYPSEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLLRNPKED 93
L+P +I+ + + + + P + H ++ K D
Sbjct: 29 LQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVD 88
Query: 94 FGKSDFIVK-EGSLLDVFEGFISFFQPEIISFWGYPSEEHKVQTEDGYILTN 144
F + + I+ E +++ E+GYI
Sbjct: 89 LQNRPFRLNGDNGEYTCDALIIATGASARYHSPNTAIFEGQLELENGYIKVQ 140
>d1cvla_ c.69.1.18 (A:) Lipase {Chromobacterium viscosum [TaxId:
42739]}
Length = 319
Score = 25.6 bits (55), Expect = 4.1
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 153 YPIIMFHGLSVSSDCWLLRYEVNSYARLL 181
YP+I+ HGL+ + + L
Sbjct: 9 YPVILVHGLAGTDKFANVVDYWYGIQSDL 37
Score = 25.2 bits (54), Expect = 6.1
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 70 YPIIMFHGLSVSSDCWLLRN 89
YP+I+ HGL+ + + +
Sbjct: 9 YPVILVHGLAGTDKFANVVD 28
>d1m33a_ c.69.1.26 (A:) Biotin biosynthesis protein BioH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 25.6 bits (54), Expect = 4.2
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 68 GGYPIIMFHGLSVSSDCW 85
G +++ HG ++++ W
Sbjct: 10 GNVHLVLLHGWGLNAEVW 27
Score = 25.6 bits (54), Expect = 4.2
Identities = 4/18 (22%), Positives = 11/18 (61%)
Query: 151 GGYPIIMFHGLSVSSDCW 168
G +++ HG ++++ W
Sbjct: 10 GNVHLVLLHGWGLNAEVW 27
>d1a8sa_ c.69.1.12 (A:) Chloroperoxidase F {Pseudomonas fluorescens
[TaxId: 294]}
Length = 273
Score = 25.3 bits (53), Expect = 4.3
Identities = 14/102 (13%), Positives = 28/102 (27%), Gaps = 5/102 (4%)
Query: 69 GYPIIMFHGLSVSSDCWLLRNPKEDFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGYP 128
G PI+ HG +++D W + + V D S Y
Sbjct: 19 GQPIVFSHGWPLNADSW--ESQMIFLAAQGYRV---IAHDRRGHGRSSQPWSGNDMDTYA 73
Query: 129 SEEHKVQTEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWLL 170
+ ++ + GG + + G ++
Sbjct: 74 DDLAQLIEHLDLRDAVLFGFSTGGGEVARYIGRHGTARVAKA 115
>d1pjaa_ c.69.1.13 (A:) Palmitoyl protein thioesterase 2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 268
Score = 25.4 bits (54), Expect = 4.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 71 PIIMFHGLSVSSDCW 85
P+I+ HGL SS +
Sbjct: 4 PVIVVHGLFDSSYSF 18
Score = 25.4 bits (54), Expect = 4.4
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 154 PIIMFHGLSVSSDCW 168
P+I+ HGL SS +
Sbjct: 4 PVIVVHGLFDSSYSF 18
>d1thta_ c.69.1.13 (A:) Myristoyl-ACP-specific thioesterase
{Vibrio harveyi [TaxId: 669]}
Length = 302
Score = 25.3 bits (54), Expect = 4.5
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 46 SEEHKVQTEDGYILTNFRMPNPGGYP-----IIMFHGLSVSSDCWL 86
+ H ++ +G L + P P I++ G + D +
Sbjct: 4 TIAHVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARRMDHFA 49
Score = 25.3 bits (54), Expect = 4.5
Identities = 8/46 (17%), Positives = 17/46 (36%), Gaps = 5/46 (10%)
Query: 129 SEEHKVQTEDGYILTNFRMPNPGGYP-----IIMFHGLSVSSDCWL 169
+ H ++ +G L + P P I++ G + D +
Sbjct: 4 TIAHVLRVNNGQELHVWETPPKENVPFKNNTILIASGFARRMDHFA 49
>d1a8qa_ c.69.1.12 (A:) Bromoperoxidase A1 {Streptomyces
aureofaciens [TaxId: 1894]}
Length = 274
Score = 25.2 bits (53), Expect = 4.8
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G P++ HG ++ D W
Sbjct: 19 GRPVVFIHGWPLNGDAW 35
Score = 25.2 bits (53), Expect = 4.8
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G P++ HG ++ D W
Sbjct: 19 GRPVVFIHGWPLNGDAW 35
>d2r8ba1 c.69.1.14 (A:44-246) Uncharacterized protein Atu2452
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 203
Score = 25.1 bits (53), Expect = 5.5
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 53 TEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWL 86
T+D Y R G ++ HG + +
Sbjct: 2 TKDSYFHK-SRAGVAGAPLFVLLHGTGGDENQFF 34
Score = 25.1 bits (53), Expect = 5.5
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
Query: 136 TEDGYILTNFRMPNPGGYPIIMFHGLSVSSDCWL 169
T+D Y R G ++ HG + +
Sbjct: 2 TKDSYFHK-SRAGVAGAPLFVLLHGTGGDENQFF 34
>d1brta_ c.69.1.12 (A:) Bromoperoxidase A2 {Streptomyces
aureofaciens [TaxId: 1894]}
Length = 277
Score = 25.2 bits (53), Expect = 5.7
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G P+++ HG +S W
Sbjct: 23 GQPVVLIHGFPLSGHSW 39
Score = 25.2 bits (53), Expect = 5.7
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G P+++ HG +S W
Sbjct: 23 GQPVVLIHGFPLSGHSW 39
>d1xkla_ c.69.1.20 (A:) Salicylic acid-binding protein 2 (SABP2)
{Common tobacco (Nicotiana tabacum) [TaxId: 4097]}
Length = 258
Score = 24.9 bits (52), Expect = 5.9
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G ++ HG W
Sbjct: 2 GKHFVLVHGACHGGWSW 18
Score = 24.9 bits (52), Expect = 5.9
Identities = 4/17 (23%), Positives = 6/17 (35%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G ++ HG W
Sbjct: 2 GKHFVLVHGACHGGWSW 18
>d2rhwa1 c.69.1.10 (A:4-286)
2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase
(BPHD) {Burkholderia xenovorans [TaxId: 36873]}
Length = 283
Score = 24.8 bits (52), Expect = 6.3
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G +IM HG + W
Sbjct: 30 GETVIMLHGGGPGAGGW 46
Score = 24.8 bits (52), Expect = 6.3
Identities = 6/17 (35%), Positives = 8/17 (47%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G +IM HG + W
Sbjct: 30 GETVIMLHGGGPGAGGW 46
>d1hkha_ c.69.1.12 (A:) Gamma-lactamase {Aureobacterium sp.
[TaxId: 51671]}
Length = 279
Score = 24.9 bits (52), Expect = 6.4
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G P+++ HG + W
Sbjct: 23 GQPVVLIHGYPLDGHSW 39
Score = 24.9 bits (52), Expect = 6.4
Identities = 5/17 (29%), Positives = 9/17 (52%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G P+++ HG + W
Sbjct: 23 GQPVVLIHGYPLDGHSW 39
>d1va4a_ c.69.1.12 (A:) Arylesterase {Pseudomonas fluorescens
[TaxId: 294]}
Length = 271
Score = 24.9 bits (52), Expect = 7.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G P++ HG + +D W
Sbjct: 19 GKPVLFSHGWLLDADMW 35
Score = 24.9 bits (52), Expect = 7.0
Identities = 6/17 (35%), Positives = 10/17 (58%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G P++ HG + +D W
Sbjct: 19 GKPVLFSHGWLLDADMW 35
>d1zd3a2 c.69.1.11 (A:225-547) Mammalian epoxide hydrolase,
C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 322
Score = 24.8 bits (52), Expect = 7.0
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G + + HG S W
Sbjct: 32 GPAVCLCHGFPESWYSW 48
Score = 24.8 bits (52), Expect = 7.0
Identities = 5/17 (29%), Positives = 7/17 (41%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G + + HG S W
Sbjct: 32 GPAVCLCHGFPESWYSW 48
>d2java1 d.144.1.7 (A:3-271) Serine/threonine-protein kinase Nek2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 269
Score = 24.6 bits (53), Expect = 8.2
Identities = 9/35 (25%), Positives = 15/35 (42%)
Query: 93 DFGKSDFIVKEGSLLDVFEGFISFFQPEIISFWGY 127
DFG + + + S F G + PE ++ Y
Sbjct: 157 DFGLARILNHDTSFAKAFVGTPYYMSPEQMNRMSY 191
>d1c4xa_ c.69.1.10 (A:) 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate
hydrolase (BPHD) {Rhodococcus sp., strain rha1 [TaxId:
1831]}
Length = 281
Score = 24.5 bits (51), Expect = 9.3
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 66 NPGGYPIIMFHGLSVSSDCW 85
+P +++ HG +
Sbjct: 23 DPQSPAVVLLHGAGPGAHAA 42
Score = 24.5 bits (51), Expect = 9.3
Identities = 3/20 (15%), Positives = 8/20 (40%)
Query: 149 NPGGYPIIMFHGLSVSSDCW 168
+P +++ HG +
Sbjct: 23 DPQSPAVVLLHGAGPGAHAA 42
>d1mj5a_ c.69.1.8 (A:) Haloalkane dehalogenase {Sphingomonas
paucimobilis, UT26, LinB [TaxId: 13689]}
Length = 298
Score = 24.4 bits (51), Expect = 9.9
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 69 GYPIIMFHGLSVSSDCW 85
G PI+ HG SS W
Sbjct: 28 GDPILFQHGNPTSSYLW 44
Score = 24.4 bits (51), Expect = 9.9
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 152 GYPIIMFHGLSVSSDCW 168
G PI+ HG SS W
Sbjct: 28 GDPILFQHGNPTSSYLW 44
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.142 0.448
Gapped
Lambda K H
0.267 0.0370 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 736,125
Number of extensions: 35207
Number of successful extensions: 170
Number of sequences better than 10.0: 1
Number of HSP's gapped: 167
Number of HSP's successfully gapped: 70
Length of query: 181
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 101
Effective length of database: 1,309,196
Effective search space: 132228796
Effective search space used: 132228796
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (24.0 bits)