BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy17380
         (107 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1R4V|A Chain A, 1.9a Crystal Structure Of Protein Aq328 From Aquifex
           Aeolicus
          Length = 171

 Score = 27.7 bits (60), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 3/49 (6%)

Query: 41  NRKEELEFEQRNIASLLAKFRIDYADLIIITTITRRPHEETVEFYNHLV 89
           N  E+L+ E RNI   L    + +AD+I   T  R+P  E  EF   +V
Sbjct: 122 NVGEDLKSEYRNIXGGLL---LXHADVIKKATGERKPSREAXEFVAQIV 167


>pdb|2OZE|A Chain A, The Crystal Structure Of Delta Protein Of Psm19035 From
           Streptoccocus Pyogenes
          Length = 298

 Score = 26.9 bits (58), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 30  ASCKLRVFALANRKEELEFEQRNIASLLAKFRIDYADLIIITTI 73
            +  L +     R    E E R +A+LLA  + DY DLIII T+
Sbjct: 121 GTFDLMLLPKLTRSWTFENESRLLATLLAPLKSDY-DLIIIDTV 163


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.324    0.137    0.405 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,554,037
Number of Sequences: 62578
Number of extensions: 74395
Number of successful extensions: 187
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 185
Number of HSP's gapped (non-prelim): 6
length of query: 107
length of database: 14,973,337
effective HSP length: 72
effective length of query: 35
effective length of database: 10,467,721
effective search space: 366370235
effective search space used: 366370235
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)